Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4U3U_0011/1/38:45No text annotation
Not in a motif group
geometric
HL_5TBW_001
HL_06192.2
HL_4U3U_0021/1/69:74No text annotation
Not in a motif group
homologous
HL_5TBW_002
HL_02862.2
HL_4U3U_0031/1/90:96No text annotation
Not in a motif group
homologous
HL_5TBW_003
HL_67216.7
HL_4U3U_0041/1/132:136No text annotation
Not in a motif group
homologous
HL_5TBW_004
HL_98426.1
HL_4U3U_0051/1/194:201T-loop with 1 bulged base
Not in a motif group
homologous
HL_5TBW_005
HL_89380.2
HL_4U3U_0061/1/208:212No text annotation
Not in a motif group
homologous
HL_8C3A_006
HL_98984.2
HL_4U3U_0071/1/216:224No text annotation
Not in a motif group
homologous
HL_5TBW_007
HL_08002.9
HL_4U3U_0081/1/278:287No text annotation
Not in a motif group
homologous
HL_5TBW_008
HL_71554.2
HL_4U3U_0101/1/357:362Other HL
Not in a motif group
homologous
HL_5TBW_010
HL_42097.2
HL_4U3U_0111/1/382:387GNRA
Not in a motif group
homologous
HL_5TBW_011
HL_42097.2
HL_4U3U_0121/1/543:548No text annotation
Not in a motif group
homologous
HL_5TBW_012
HL_86373.2
HL_4U3U_0131/1/599:604GNRA
Not in a motif group
homologous
HL_5TBW_013
HL_42097.2
HL_4U3U_0141/1/640:649T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5TBW_014
HL_89380.2
HL_4U3U_0151/1/686:694No text annotation
Not in a motif group
homologous
HL_5TBW_015
HL_03345.1
HL_4U3U_0161/1/707:712GNRA
Not in a motif group
homologous
HL_5TBW_016
HL_42097.2
HL_4U3U_0171/1/732:737GNRA
Not in a motif group
homologous
HL_5TBW_017
HL_42097.2
HL_4U3U_0221/1/958:963No text annotation
Not in a motif group
homologous
HL_5TBW_022
HL_94803.2
HL_4U3U_0251/1/1126:1132GNRA
Not in a motif group
homologous
HL_5TBW_025
HL_42097.2
HL_4U3U_0261/1/1148:1155No text annotation
Not in a motif group
homologous
HL_5TBW_026
HL_64430.2
HL_4U3U_0301/1/1403:1408GNRA
Not in a motif group
homologous
HL_5TBW_030
HL_42097.2
HL_4U3U_0621/1/2840:2848No text annotation
Not in a motif group
homologous
HL_5TBW_061
HL_06192.2
HL_4U3U_0631/1/2897:2904No text annotation
Not in a motif group
homologous
HL_5TBW_062
HL_91104.1
HL_4U3U_0641/1/2920:2926No text annotation
Not in a motif group
homologous
HL_5TBW_063
HL_43656.2
HL_4U3U_0661/1/3025:3030GNRA
Not in a motif group
homologous
HL_5TBW_065
HL_42097.2
HL_4U3U_0671/1/3068:3073Ribsomal LSU H95
Not in a motif group
homologous
HL_5TBW_066
HL_46680.1
HL_4U3U_0681/1/3110:3124No text annotation
Not in a motif group
homologous
HL_5TBW_067
HL_56677.7
HL_4U3U_0691/1/3194:3197No text annotation
Not in a motif group
geometric
HL_5TBW_068
HL_98426.1
HL_4U3U_0701/1/3240:3247No text annotation
Not in a motif group
homologous
HL_5TBW_069
HL_14449.2
HL_4U3U_0711/1/3303:3311No text annotation
Not in a motif group
homologous
HL_5TBW_070
HL_27930.1
HL_4U3U_0721/1/3350:3353No text annotation
Not in a motif group
geometric
HL_5TBW_071
HL_53837.1
HL_4U3U_0741/2/70:81No text annotation
Not in a motif group
homologous
HL_4V88_187
HL_40069.1
HL_4U3U_0751/2/154:160Other HL
Not in a motif group
homologous
HL_4V88_188
HL_76539.2
HL_4U3U_0761/2/190:195No text annotation
Not in a motif group
homologous
HL_4V88_189
HL_77805.2
HL_4U3U_0781/2/243:250T-loop with 1 bulged base
Not in a motif group
homologous
HL_4V88_191
HL_27930.1
HL_4U3U_0791/2/276:279No text annotation
Not in a motif group
geometric
HL_4WF9_037
HL_94803.2
HL_4U3U_0801/2/330:338No text annotation
Not in a motif group
homologous
HL_4V88_193
HL_69023.2
HL_4U3U_0811/2/368:373No text annotation
Not in a motif group
homologous
HL_4V88_194
HL_50142.2
HL_4U3U_0821/2/393:404No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_4U3U_0831/2/414:419UNCG
Not in a motif group
homologous
HL_4V88_196
HL_03562.2
HL_4U3U_0841/2/450:456No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_09136.1
HL_4U3U_0861/2/520:532No text annotation
Not in a motif group
geometric
HL_4V88_199
HL_06285.2
HL_4U3U_0931/2/937:942Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_4U3U_0951/2/1055:1064No text annotation
Not in a motif group
HL_4U3U_0961/2/1084:1089Other HL
Not in a motif group
homologous
HL_4V88_210
HL_42097.2
HL_4U3U_1061/2/1594:1602No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_60812.1
HL_4U3U_1091/3/36:41No text annotation
Not in a motif group
geometric
HL_5TBW_185
HL_87939.1
HL_4U3U_1101/3/88:93GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_42097.2
HL_4U3U_1111/4/73:78Other HL
Not in a motif group
homologous
HL_5TBW_074
HL_50142.2
HL_4U3U_1121/4/108:114No text annotation
Not in a motif group
homologous
HL_5TBW_075
HL_87939.1
HL_4U3U_1131/4/124:129No text annotation
Not in a motif group
homologous
HL_5TBW_076
HL_96851.2
HL_4U3U_1141/5/38:45No text annotation
Not in a motif group
homologous
HL_5TBW_001
HL_06192.2
HL_4U3U_1151/5/69:74No text annotation
Not in a motif group
homologous
HL_5TBW_002
HL_02862.2
HL_4U3U_1161/5/90:96No text annotation
Not in a motif group
homologous
HL_5TBW_003
HL_67216.7
HL_4U3U_1171/5/132:136No text annotation
Not in a motif group
homologous
HL_5TBW_004
HL_98426.1
HL_4U3U_1181/5/194:201T-loop with 1 bulged base
Not in a motif group
homologous
HL_5TBW_005
HL_89380.2
HL_4U3U_1191/5/208:212No text annotation
Not in a motif group
homologous
HL_8C3A_006
HL_98984.2
HL_4U3U_1201/5/216:224No text annotation
Not in a motif group
homologous
HL_5TBW_007
HL_08002.9
HL_4U3U_1211/5/278:287No text annotation
Not in a motif group
homologous
HL_5TBW_008
HL_71554.2
HL_4U3U_1221/5/303:312No text annotation
Not in a motif group
homologous
HL_5TBW_009
HL_12078.2
HL_4U3U_1231/5/357:362Other HL
Not in a motif group
homologous
HL_5TBW_010
HL_42097.2
HL_4U3U_1241/5/382:387GNRA
Not in a motif group
homologous
HL_5TBW_011
HL_42097.2
HL_4U3U_1251/5/543:548No text annotation
Not in a motif group
HL_4U3U_1261/5/599:604GNRA
Not in a motif group
homologous
HL_5TBW_013
HL_42097.2
HL_4U3U_1271/5/640:649T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5TBW_014
HL_89380.2
HL_4U3U_1281/5/686:694No text annotation
Not in a motif group
homologous
HL_5TBW_015
HL_03345.1
HL_4U3U_1291/5/707:712No text annotation
Not in a motif group
homologous
HL_8C3A_016
HL_42097.2
HL_4U3U_1301/5/732:737GNRA
Not in a motif group
homologous
HL_5TBW_017
HL_42097.2
HL_4U3U_1311/5/763:768No text annotation
Not in a motif group
geometric
HL_5TBW_018
HL_34168.2
HL_4U3U_1321/5/844:849GNRA
Not in a motif group
homologous
HL_5TBW_019
HL_42097.2
HL_4U3U_1331/5/876:885No text annotation
Not in a motif group
homologous
HL_5TBW_020
HL_39334.6
HL_4U3U_1341/5/910:918No text annotation
Not in a motif group
homologous
HL_5TBW_021
HL_33817.1
HL_4U3U_1351/5/958:963No text annotation
Not in a motif group
homologous
HL_5TBW_022
HL_94803.2
HL_4U3U_1371/5/1076:1083No text annotation
Not in a motif group
homologous
HL_5TBW_024
HL_71554.2
HL_4U3U_1381/5/1126:1132GNRA
Not in a motif group
homologous
HL_5TBW_025
HL_42097.2
HL_4U3U_1391/5/1148:1155No text annotation
Not in a motif group
homologous
HL_5TBW_026
HL_64430.2
HL_4U3U_1431/5/1403:1408GNRA
Not in a motif group
homologous
HL_5TBW_030
HL_42097.2
HL_4U3U_1441/5/1462:1470T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5TBW_031
HL_89380.2
HL_4U3U_1451/5/1506:1512No text annotation
Not in a motif group
homologous
HL_5TBW_032
HL_46680.1
HL_4U3U_1461/5/1544:1549Other HL
Not in a motif group
homologous
HL_5TBW_033
HL_76539.2
HL_4U3U_1481/5/1599:1608No text annotation
Not in a motif group
homologous
HL_5TBW_035
HL_69023.2
HL_4U3U_1491/5/1634:1639GNRA
Not in a motif group
homologous
HL_5TBW_036
HL_42097.2
HL_4U3U_1501/5/1680:1688No text annotation
Not in a motif group
homologous
HL_5TBW_037
HL_60812.1
HL_4U3U_1511/5/1719:1725No text annotation
Not in a motif group
homologous
HL_5TBW_038
HL_86373.2
HL_4U3U_1531/5/1792:1796No text annotation
Not in a motif group
homologous
HL_5TBW_040
HL_38927.2
HL_4U3U_1541/5/1844:1851No text annotation
Not in a motif group
homologous
HL_5TBW_041
HL_64430.2
HL_4U3U_1551/5/1862:1868GNRA with one bulged base
Not in a motif group
homologous
HL_5TBW_042
HL_42097.2
HL_4U3U_1561/5/1923:1928UNCG
Not in a motif group
geometric
HL_5TBW_043
HL_03562.2
HL_4U3U_1581/5/2110:2114No text annotation
Not in a motif group
homologous
HL_5TBW_045
HL_28980.1
HL_4U3U_1591/5/2135:2145No text annotation
Not in a motif group
homologous
HL_5TBW_046
HL_43613.5
HL_4U3U_1601/5/2164:2170GNRA
Not in a motif group
homologous
HL_5TBW_047
HL_42097.2
HL_4U3U_1611/5/2220:2225Other HL
Not in a motif group
homologous
HL_5TBW_048
HL_42097.2
HL_4U3U_1621/5/2253:2263No text annotation
Not in a motif group
homologous
HL_5TBW_049
HL_71924.2
HL_4U3U_1631/5/2292:2300No text annotation
Not in a motif group
homologous
HL_5TBW_050
HL_51824.1
HL_4U3U_1641/5/2369:2378No text annotation
Not in a motif group
homologous
HL_5TBW_051
HL_90642.6
HL_4U3U_1661/5/2533:2546No text annotation
Not in a motif group
HL_4U3U_1671/5/2568:2573No text annotation
Not in a motif group
HL_4U3U_1681/5/2616:2624No text annotation
Not in a motif group
homologous
HL_5TBW_054
HL_53171.2
HL_4U3U_1691/5/2633:2645No text annotation
Not in a motif group
homologous
HL_5TBW_055
HL_19870.6
HL_4U3U_1701/5/2673:2681No text annotation
Not in a motif group
homologous
HL_5TBW_056
HL_76406.4
HL_4U3U_1711/5/2693:2700No text annotation
Not in a motif group
homologous
HL_5TBW_057
HL_12078.2
HL_4U3U_1721/5/2724:2732No text annotation
Not in a motif group
homologous
HL_5TBW_058
HL_92229.2
HL_4U3U_1731/5/2744:2749GNRA
Not in a motif group
homologous
HL_5TBW_059
HL_42097.2
HL_4U3U_1741/5/2776:2784No text annotation
Not in a motif group
homologous
HL_5TBW_060
HL_96598.1
HL_4U3U_1751/5/2840:2848No text annotation
Not in a motif group
homologous
HL_5TBW_061
HL_06192.2
HL_4U3U_1761/5/2897:2904No text annotation
Not in a motif group
homologous
HL_5TBW_062
HL_91104.1
HL_4U3U_1771/5/2920:2926No text annotation
Not in a motif group
homologous
HL_5TBW_063
HL_43656.2
HL_4U3U_1781/5/2963:2968GNRA
Not in a motif group
homologous
HL_5TBW_064
HL_42097.2
HL_4U3U_1791/5/3025:3030GNRA
Not in a motif group
geometric
HL_5TBW_065
HL_42097.2
HL_4U3U_1801/5/3068:3073Ribsomal LSU H95
Not in a motif group
homologous
HL_5TBW_066
HL_46680.1
HL_4U3U_1811/5/3110:3124No text annotation
Not in a motif group
homologous
HL_5TBW_067
HL_56677.7
HL_4U3U_1821/5/3194:3197No text annotation
Not in a motif group
homologous
HL_5TBW_068
HL_98426.1
HL_4U3U_1831/5/3240:3247No text annotation
Not in a motif group
homologous
HL_5TBW_069
HL_14449.2
HL_4U3U_1841/5/3303:3311No text annotation
Not in a motif group
geometric
HL_5TBW_070
HL_27930.1
HL_4U3U_1851/5/3350:3353No text annotation
Not in a motif group
geometric
HL_4V88_192
HL_53837.1
HL_4U3U_1861/6/7:17No text annotation
Not in a motif group
homologous
HL_4V88_186
HL_89881.2
HL_4U3U_1881/6/154:160Other HL
Not in a motif group
homologous
HL_4V88_188
HL_76539.2
HL_4U3U_1891/6/190:195No text annotation
Not in a motif group
homologous
HL_4V88_189
HL_77805.2
HL_4U3U_1901/6/230:235No text annotation
Not in a motif group
HL_4U3U_1911/6/243:250T-loop with 1 bulged base
Not in a motif group
homologous
HL_4V88_191
HL_27930.1
HL_4U3U_1921/6/276:279No text annotation
Not in a motif group
homologous
HL_4V88_192
HL_53837.1
HL_4U3U_1931/6/330:338No text annotation
Not in a motif group
homologous
HL_4V88_193
HL_69023.2
HL_4U3U_1941/6/368:373No text annotation
Not in a motif group
homologous
HL_4V88_194
HL_50142.2
HL_4U3U_1951/6/393:404No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_4U3U_1961/6/414:419UNCG
Not in a motif group
homologous
HL_4V88_196
HL_03562.2
HL_4U3U_1971/6/450:456No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_09136.1
HL_4U3U_1991/6/520:532No text annotation
Not in a motif group
homologous
HL_4V88_199
HL_06285.2
HL_4U3U_2001/6/569:574Other HL
Not in a motif group
homologous
HL_4V88_200
HL_53845.1
HL_4U3U_2031/6/764:772No text annotation
Not in a motif group
homologous
HL_4V88_203
HL_46766.2
HL_4U3U_2041/6/777:783No text annotation
Not in a motif group
homologous
HL_4V88_204
HL_97896.2
HL_4U3U_2051/6/829:843No text annotation
Not in a motif group
homologous
HL_4V88_205
HL_96598.1
HL_4U3U_2061/6/900:909No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_12326.1
HL_4U3U_2071/6/937:942Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_4U3U_2081/6/997:1007No text annotation
Not in a motif group
homologous
HL_4V88_208
HL_12326.1
HL_4U3U_2091/6/1055:1064No text annotation
Not in a motif group
homologous
HL_4V88_209
HL_32255.1
HL_4U3U_2101/6/1084:1089Other HL
Not in a motif group
homologous
HL_4V88_210
HL_42097.2
HL_4U3U_2111/6/1121:1126GNRA
Not in a motif group
homologous
HL_4V88_211
HL_42097.2
HL_4U3U_2121/6/1188:1197No text annotation
Not in a motif group
homologous
HL_4V88_212
HL_73530.2
HL_4U3U_2131/6/1238:1247No text annotation
Not in a motif group
homologous
HL_4V88_213
HL_53597.2
HL_4U3U_2141/6/1296:1301GNRA
Not in a motif group
homologous
HL_4V88_214
HL_42097.2
HL_4U3U_2151/6/1309:1316No text annotation
Not in a motif group
homologous
HL_4V88_215
HL_71554.2
HL_4U3U_2161/6/1359:1364No text annotation
Not in a motif group
homologous
HL_4V88_216
HL_10278.1
HL_4U3U_2171/6/1396:1402No text annotation
Not in a motif group
homologous
HL_4V88_217
HL_42097.2
HL_4U3U_2181/6/1501:1506GNRA
Not in a motif group
homologous
HL_4V88_218
HL_42097.2
HL_4U3U_2191/6/1550:1561No text annotation
Not in a motif group
homologous
HL_4V88_219
HL_22554.1
HL_4U3U_2201/6/1594:1602No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_60812.1
HL_4U3U_2221/6/1778:1783Other HL
Not in a motif group
homologous
HL_4V88_222
HL_16173.1
HL_4U3U_2231/7/36:41No text annotation
Not in a motif group
homologous
HL_5TBW_185
HL_87939.1
HL_4U3U_2241/7/88:93GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_42097.2
HL_4U3U_2251/8/69:89No text annotation
Not in a motif group
HL_4U3U_2261/8/108:114No text annotation
Not in a motif group
homologous
HL_5TBW_075
HL_87939.1
HL_4U3U_2271/8/124:129No text annotation
Not in a motif group
homologous
HL_5TBW_076
HL_96851.2

Problematic loops

#loop idProblemSequence
HL_4U3U_009No text annotation
HL_4U3U_018No text annotation
HL_4U3U_019GNRA
HL_4U3U_020No text annotation
HL_4U3U_021No text annotation
HL_4U3U_023GNRA
HL_4U3U_024No text annotation
HL_4U3U_027No text annotation
HL_4U3U_028No text annotation
HL_4U3U_029No text annotation
HL_4U3U_031T-loop with 2 stacked bulged bases
HL_4U3U_032No text annotation
HL_4U3U_033Other HL
HL_4U3U_034No text annotation
HL_4U3U_035No text annotation
HL_4U3U_036GNRA
HL_4U3U_037No text annotation
HL_4U3U_038No text annotation
HL_4U3U_039No text annotation
HL_4U3U_040No text annotation
HL_4U3U_041No text annotation
HL_4U3U_042GNRA with one bulged base
HL_4U3U_043UNCG
HL_4U3U_044No text annotation
HL_4U3U_045No text annotation
HL_4U3U_046No text annotation
HL_4U3U_047GNRA
HL_4U3U_048Other HL
HL_4U3U_049No text annotation
HL_4U3U_050No text annotation
HL_4U3U_051No text annotation
HL_4U3U_052No text annotation
HL_4U3U_053No text annotation
HL_4U3U_054No text annotation
HL_4U3U_055No text annotation
HL_4U3U_056No text annotation
HL_4U3U_057No text annotation
HL_4U3U_058No text annotation
HL_4U3U_059No text annotation
HL_4U3U_060GNRA
HL_4U3U_061No text annotation
HL_4U3U_065GNRA
HL_4U3U_073No text annotation
HL_4U3U_077No text annotation
HL_4U3U_085No text annotation
HL_4U3U_087Other HL
HL_4U3U_088No text annotation
HL_4U3U_089No text annotation
HL_4U3U_090No text annotation
HL_4U3U_091No text annotation
HL_4U3U_092No text annotation
HL_4U3U_094No text annotation
HL_4U3U_097GNRA
HL_4U3U_098No text annotation
HL_4U3U_099No text annotation
HL_4U3U_100GNRA
HL_4U3U_101No text annotation
HL_4U3U_102No text annotation
HL_4U3U_103No text annotation
HL_4U3U_104GNRA
HL_4U3U_105No text annotation
HL_4U3U_107No text annotation
HL_4U3U_108Other HL
HL_4U3U_136No text annotation
HL_4U3U_140No text annotation
HL_4U3U_141No text annotation
HL_4U3U_142No text annotation
HL_4U3U_147No text annotation
HL_4U3U_152Other HL
HL_4U3U_157No text annotation
HL_4U3U_165No text annotation
HL_4U3U_187No text annotation
HL_4U3U_198No text annotation
HL_4U3U_201No text annotation
HL_4U3U_202No text annotation
HL_4U3U_221No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4U3U_0011/1/3:4,
1/4/155:156
No text annotation
Not in a motif group
IL_4U3U_0021/1/7:8,
1/4/150:152
Single bulged C
Not in a motif group
homologous
IL_5TBW_002
IL_61258.12
IL_4U3U_0031/1/13:15,
1/4/144:145
Single bulged U
Not in a motif group
homologous
IL_5TBW_003
IL_83039.14
IL_4U3U_0041/1/27:28,
1/1/56:58
Single stack bend
Not in a motif group
homologous
IL_5TBW_004
IL_76488.2
IL_4U3U_0051/1/31:38,
1/1/45:53
tSH-tHW-tHH-tHS
Not in a motif group
homologous
IL_5TBW_005
IL_35728.2
IL_4U3U_0061/1/82:89,
1/1/97:103
No text annotation
Not in a motif group
homologous
IL_5TBW_006
IL_88613.1
IL_4U3U_0071/1/123:124,
1/1/144:149
No text annotation
Not in a motif group
geometric
IL_5TBW_007
IL_19724.2
IL_4U3U_0081/1/125:127,
1/1/141:143
No text annotation
Not in a motif group
homologous
IL_5TBW_008
IL_95997.1
IL_4U3U_0091/1/163:165,
1/1/257:258
Single stack bend
Not in a motif group
homologous
IL_5TBW_009
IL_76488.2
IL_4U3U_0101/1/169:170,
1/1/248:253
No text annotation
Not in a motif group
homologous
IL_5TBW_010
IL_74684.1
IL_4U3U_0111/1/177:179,
1/1/237:241
Major groove platform with extra pair
Not in a motif group
homologous
IL_5TBW_011
IL_63450.2
IL_4U3U_0121/1/189:191,
1/1/204:205
Single bulged U
Not in a motif group
homologous
IL_5TBW_012
IL_83039.14
IL_4U3U_0131/1/337:339,
1/4/25:26
Single bulged A
Not in a motif group
homologous
IL_5TBW_013
IL_37497.3
IL_4U3U_0141/1/376:379,
1/1/390:403
No text annotation
Not in a motif group
homologous
IL_5TBW_014
IL_60992.6
IL_4U3U_0151/1/404:410,
1/4/13:19
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5TBW_015
IL_66414.6
IL_4U3U_0161/1/429:431,
1/1/628:630
No text annotation
Not in a motif group
homologous
IL_5TBW_016
IL_51629.2
IL_4U3U_0181/1/512:513,
1/1/577:579
Single bulged A
Not in a motif group
homologous
IL_5TBW_018
IL_37497.3
IL_4U3U_0191/1/517:525,
1/1/567:573
No text annotation
Not in a motif group
homologous
IL_5TBW_019
IL_23992.1
IL_4U3U_0201/1/531:538,
1/1/553:561
No text annotation
Not in a motif group
homologous
IL_5TBW_020
IL_07703.1
IL_4U3U_0211/1/668:670,
1/1/792:794
No text annotation
Not in a motif group
homologous
IL_5TBW_021
IL_95997.1
IL_4U3U_0221/1/680:684,
1/1/696:700
No text annotation
Not in a motif group
homologous
IL_5TBW_022
IL_74284.1
IL_4U3U_0231/1/725:728,
1/1/741:745
UAA/GAN
Not in a motif group
homologous
IL_5TBW_023
IL_07235.1
IL_4U3U_0241/1/752:753,
1/1/779:781
Single bulged A
Not in a motif group
homologous
IL_5TBW_024
IL_37497.3
IL_4U3U_0251/1/755:756,
1/1/775:777
Single bulged U
Not in a motif group
homologous
IL_5TBW_025
IL_83039.14
IL_4U3U_0271/1/803:805,
1/1/938:940
No text annotation
Not in a motif group
geometric
IL_5TBW_027
IL_95997.1
IL_4U3U_0281/1/805:809,
1/1/931:938
No text annotation
Not in a motif group
homologous
IL_5TBW_028
IL_17470.6
IL_4U3U_0341/1/954:956,
1/1/965:967
No text annotation
Not in a motif group
homologous
IL_5TBW_034
IL_95997.1
IL_4U3U_0351/1/969:970,
1/1/1111:1113
Single stack bend
Not in a motif group
homologous
IL_5TBW_035
IL_76488.2
IL_4U3U_0361/1/977:981,
1/1/1102:1104
No text annotation
Not in a motif group
homologous
IL_5TBW_036
IL_67474.4
IL_4U3U_0371/1/983:985,
1/1/1099:1100
Single bulged G
Not in a motif group
homologous
IL_5TBW_037
IL_00225.3
IL_4U3U_0461/1/1120:1122,
1/1/1136:1138
No text annotation
Not in a motif group
homologous
IL_5TBW_046
IL_95997.1
IL_4U3U_0471/1/1123:1125,
1/1/1133:1135
Isolated cWS basepair
Not in a motif group
homologous
IL_5TBW_047
IL_52767.2
IL_4U3U_0481/1/1167:1171,
1/1/1328:1332
UAA/GAN
Not in a motif group
homologous
IL_5TBW_048
IL_89002.2
IL_4U3U_0491/1/1173:1180,
1/1/1325:1326
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5TBW_049
IL_15861.7
IL_4U3U_0501/1/1180:1182,
1/1/1324:1325
Single bulged U
Not in a motif group
geometric
IL_5TBW_050
IL_83039.14
IL_4U3U_0511/1/1187:1194,
1/1/1314:1319
No text annotation
Not in a motif group
homologous
IL_5TBW_051
IL_27086.1
IL_4U3U_0521/1/1194:1205,
1/1/1299:1314
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_53762.1
IL_4U3U_0531/1/1207:1209,
1/1/1296:1297
Single bulged U
Not in a motif group
homologous
IL_5TBW_053
IL_83039.14
IL_4U3U_0541/1/1218:1226,
1/1/1283:1287
Kink-turn
Not in a motif group
homologous
IL_5TBW_054
IL_90538.4
IL_4U3U_0571/1/1376:1378,
1/1/1428:1431
Isolated cWS basepair
Not in a motif group
homologous
IL_5TBW_057
IL_52767.2
IL_4U3U_0581/1/1385:1387,
1/1/1420:1421
Single bulged A
Not in a motif group
homologous
IL_5TBW_058
IL_37497.3
IL_4U3U_0591/1/1388:1395,
1/1/1415:1419
Kink-turn
Not in a motif group
homologous
IL_5TBW_059
IL_70923.2
IL_4U3U_0601/1/1398:1400,
1/1/1411:1412
Single bulged A
Not in a motif group
homologous
IL_5TBW_060
IL_37497.3
IL_4U3U_0611/1/1444:1450,
1/1/2354:2359
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_061
IL_76042.2
IL_4U3U_0921/1/2391:2394,
1/1/2986:2988
Major groove platform with extra pair
Not in a motif group
homologous
IL_5TBW_091
IL_63450.2
IL_4U3U_1031/1/2824:2826,
1/1/2863:2865
No text annotation
Not in a motif group
geometric
IL_5TBW_103
IL_95997.1
IL_4U3U_1041/1/2826:2828,
1/1/2862:2863
Major groove platform
Not in a motif group
geometric
IL_5TBW_104
IL_76223.2
IL_4U3U_1051/1/2828:2830,
1/1/2858:2862
No text annotation
Not in a motif group
homologous
IL_5TBW_105
IL_92788.2
IL_4U3U_1061/1/2835:2839,
1/1/2849:2853
Triple sheared
Not in a motif group
homologous
IL_5TBW_106
IL_56467.8
IL_4U3U_1071/1/2876:2877,
1/1/2949:2951
Major groove platform
Not in a motif group
homologous
IL_5TBW_107
IL_76223.2
IL_4U3U_1081/1/2879:2881,
1/1/2943:2947
No text annotation
Not in a motif group
homologous
IL_8C3A_116
IL_90933.2
IL_4U3U_1091/1/2881:2882,
1/1/2940:2943
Multiple bulged bases
Not in a motif group
homologous
IL_5TBW_109
IL_71530.2
IL_4U3U_1101/1/2889:2891,
1/1/2912:2914
No text annotation
Not in a motif group
geometric
IL_5TBW_110
IL_51629.2
IL_4U3U_1111/1/2891:2892,
1/1/2909:2912
Minor groove platform with intercalation
Not in a motif group
geometric
IL_5TBW_111
IL_95601.3
IL_4U3U_1121/1/2918:2920,
1/1/2926:2928
No text annotation
Not in a motif group
geometric
IL_5TBW_112
IL_95997.1
IL_4U3U_1141/1/3004:3007,
1/1/3139:3144
Double sheared
Not in a motif group
homologous
IL_5TBW_114
IL_09705.9
IL_4U3U_1151/1/3012:3014,
1/1/3040:3042
No text annotation
Not in a motif group
homologous
IL_5TBW_115
IL_95997.1
IL_4U3U_1161/1/3018:3025,
1/1/3030:3036
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5TBW_116
IL_04346.7
IL_4U3U_1171/1/3047:3051,
1/1/3091:3094
Major groove minor groove platform with tHH
Not in a motif group
homologous
IL_5TBW_117
IL_37712.2
IL_4U3U_1181/1/3054:3059,
1/1/3084:3088
UAA/GAN related
Not in a motif group
homologous
IL_5TBW_118
IL_17136.1
IL_4U3U_1191/1/3063:3064,
1/1/3077:3080
Multiple bulged bases
Not in a motif group
homologous
IL_5TBW_119
IL_71530.2
IL_4U3U_1201/1/3103:3107,
1/1/3127:3131
UAA/GAN
Not in a motif group
homologous
IL_5TBW_120
IL_89002.2
IL_4U3U_1211/1/3163:3166,
1/1/3284:3287
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6CZR_168
IL_67743.1
IL_4U3U_1231/1/3177:3179,
1/1/3210:3211
Single bulged A
Not in a motif group
geometric
IL_5TBW_123
IL_37497.3
IL_4U3U_1241/1/3179:3188,
1/1/3204:3210
No text annotation
Not in a motif group
homologous
IL_5TBW_124
IL_15174.1
IL_4U3U_1251/1/3193:3194,
1/1/3197:3199
Single bulged U
Not in a motif group
homologous
IL_5TBW_125
IL_83039.14
IL_4U3U_1261/1/3225:3229,
1/1/3258:3260
No text annotation
Not in a motif group
homologous
IL_5TBW_126
IL_19389.6
IL_4U3U_1271/1/3233:3235,
1/1/3252:3254
No text annotation
Not in a motif group
geometric
IL_5TBW_127
IL_95997.1
IL_4U3U_1281/1/3235:3238,
1/1/3249:3252
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5TBW_128
IL_30621.3
IL_4U3U_1291/1/3300:3303,
1/1/3311:3314
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_129
IL_30621.3
IL_4U3U_1301/1/3318:3320,
1/1/3387:3388
Single bulged U
Not in a motif group
geometric
IL_5TBW_130
IL_83039.14
IL_4U3U_1311/1/3324:3325,
1/1/3381:3383
Single bulged U
Not in a motif group
homologous
IL_5TBW_131
IL_83039.14
IL_4U3U_1321/1/3328:3330,
1/1/3373:3378
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5TBW_132
IL_90933.2
IL_4U3U_1331/1/3332:3337,
1/1/3367:3371
No text annotation
Not in a motif group
homologous
IL_5TBW_133
IL_83162.5
IL_4U3U_1341/1/3340:3342,
1/1/3363:3364
Single bulged U
Not in a motif group
homologous
IL_5TBW_134
IL_83039.14
IL_4U3U_1351/1/3342:3345,
1/1/3360:3363
tWS-tSW
Not in a motif group
geometric
IL_5TBW_135
IL_09705.9
IL_4U3U_1361/1/3349:3350,
1/1/3353:3356
Multiple bulged bases
Not in a motif group
homologous
IL_5TBW_136
IL_59677.2
IL_4U3U_1371/2/24:26,
1/2/600:601
Single bulged C
Not in a motif group
homologous
IL_4V88_384
IL_61258.12
IL_4U3U_1381/2/35:37,
1/2/471:473
UC cWW
Not in a motif group
geometric
IL_4V88_385
IL_51629.2
IL_4U3U_1391/2/37:41,
1/2/466:471
No text annotation
Not in a motif group
homologous
IL_4V88_386
IL_41507.1
IL_4U3U_1401/2/42:48,
1/2/431:433
No text annotation
Not in a motif group
geometric
IL_4V88_387
IL_33912.1
IL_4U3U_1411/2/50:52,
1/2/428:429
Minor groove platform
Not in a motif group
homologous
IL_4V88_388
IL_93353.1
IL_4U3U_1421/2/58:63,
1/2/87:89
No text annotation