RNA 3D Hub //

4V8N Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V8N_0011/AA/12:22No text annotation
homologous
HL_4LFB_001
HL_89881.5
HL_4V8N_0031/AA/158:163GNRA
homologous
HL_4LFB_003
HL_37824.7
HL_4V8N_0041/AA/189C:189HNo text annotation
homologous
HL_6CZR_075
NA
HL_4V8N_0051/AA/200:217No text annotation
homologous
HL_6CZR_076
NA
HL_4V8N_0061/AA/259:267GNRA related
homologous
HL_4LFB_006
HL_84299.4
HL_4V8N_0071/AA/296:301GNRA
homologous
HL_4LFB_007
HL_37824.7
HL_4V8N_0081/AA/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_4V8N_2351/AA/342:347UNCG
homologous
HL_5J7L_009
HL_34617.5
HL_4V8N_0101/AA/377:386No text annotation
geometric
HL_8KAL_008
NA
HL_4V8N_0111/AA/419:424UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_4V8N_2361/AA/458:473GNRA
homologous
HL_4LFB_012
HL_37824.7
HL_4V8N_0131/AA/522:527No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_4V8N_0141/AA/617:623No text annotation
homologous
HL_4LFB_014
HL_10453.3
HL_4V8N_0151/AA/689:698No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_4V8N_0161/AA/726:731GNRA
homologous
HL_4LFB_016
HL_37824.7
HL_4V8N_0171/AA/786:796No text annotation
homologous
HL_4LFB_017
HL_75293.5
HL_4V8N_0181/AA/838:848Mini UNCG
homologous
HL_4LFB_018
HL_48778.2
HL_4V8N_0191/AA/862:867GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_4V8N_0201/AA/897:902GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_4V8N_0211/AA/963:972No text annotation
homologous
HL_4LFB_021
HL_50779.4
HL_4V8N_0221/AA/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.7
HL_4V8N_0231/AA/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.7
HL_4V8N_0241/AA/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_4V8N_0251/AA/1128:1143No text annotation
HL_4V8N_0261/AA/1164:1172GNRA with extra cWW
geometric
HL_7A0S_056
HL_04259.3
HL_4V8N_0271/AA/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.7
HL_4V8N_0281/AA/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_4V8N_0291/AA/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_4V8N_0301/AA/1445:1457UNCG
homologous
HL_5J7L_030
HL_34617.5
HL_4V8N_0311/AA/1515:1520GNRA
homologous
HL_4LFB_032
HL_37824.7
HL_4V8N_0321/AV/13:24No text annotation
homologous
HL_4V8N_143
NA
HL_4V8N_0341/AV/55:63T-loop with 2 stacked bulged bases
homologous
HL_4V8N_145
HL_28252.6
HL_4V8N_0371/AY/13:24tRNA D-loop
homologous
HL_5B63_003
HL_20811.4
HL_4V8N_0391/AY/55:63T-loop with 2 stacked bulged bases
homologous
HL_1QTQ_003
HL_28252.6
HL_4V8N_0401/BA/59:68No text annotation
homologous
HL_7RQB_001
NA
HL_4V8N_0411/BA/87:95No text annotation
homologous
HL_7RQB_002
NA
HL_4V8N_0421/BA/123:128No text annotation
homologous
HL_7RQB_003
NA
HL_4V8N_0431/BA/139:142ANo text annotation
homologous
HL_7RQB_004
NA
HL_4V8N_0441/BA/154A:171No text annotation
HL_4V8N_0451/BA/194:201No text annotation
geometric
HL_5J7L_139
HL_30068.2
HL_4V8N_0461/BA/225:230No text annotation
homologous
HL_7RQB_007
NA
HL_4V8N_0471/BA/246:252No text annotation
homologous
HL_7RQB_008
NA
HL_4V8N_0481/BA/271J:271MNo text annotation
geometric
HL_6U8D_003
HL_32346.3
HL_4V8N_0491/BA/305:312No text annotation
homologous
HL_7RQB_010
NA
HL_4V8N_0501/BA/319:323No text annotation
homologous
HL_5J7L_143
HL_75660.5
HL_4V8N_0511/BA/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_4V8N_2261/BA/383:391No text annotation
HL_4V8N_0531/BA/410:417No text annotation
homologous
HL_7RQB_014
NA
HL_4V8N_0541/BA/462:467GNRA
homologous
HL_5J7L_147
HL_37824.7
HL_4V8N_0551/BA/487:493GNRA
homologous
HL_7RQB_016
NA
HL_4V8N_0561/BA/543:549No text annotation
homologous
HL_7RQB_017
NA
HL_4V8N_0571/BA/566:575No text annotation
homologous
HL_7RQB_018
NA
HL_4V8N_0581/BA/612:615No text annotation
homologous
HL_7RQB_019
NA
HL_4V8N_0591/BA/629:634GNRA
homologous
HL_7RQB_020
NA
HL_4V8N_0601/BA/641:647No text annotation
homologous
HL_7RQB_021
NA
HL_4V8N_0621/BA/712:719No text annotation
homologous
HL_7RQB_022
NA
HL_4V8N_0631/BA/744:753No text annotation
homologous
HL_7RQB_023
NA
HL_4V8N_0641/BA/779:785No text annotation
homologous
HL_7A0S_023
HL_53890.2
HL_4V8N_0651/BA/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_4V8N_0661/BA/884:892No text annotation
homologous
HL_7RQB_026
NA
HL_4V8N_0671/BA/955:962GNRA
homologous
HL_7RQB_027
NA
HL_4V8N_0681/BA/978:985No text annotation
homologous
HL_7RQB_028
NA
HL_4V8N_0711/BA/1222:1227GNRA
homologous
HL_7RQB_032
NA
HL_4V8N_0721/BA/1281:1289No text annotation
homologous
HL_7RQB_033
NA
HL_4V8N_0731/BA/1324:1330No text annotation
homologous
HL_7RQB_034
NA
HL_4V8N_0741/BA/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_4V8N_0751/BA/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_4V8N_0761/BA/1450A:1461Pseudoknot
homologous
HL_7A0S_036
HL_93135.1
HL_4V8N_0771/BA/1492:1498No text annotation
HL_4V8N_0781/BA/1531:1538GNRA with extra cWW
geometric
HL_4WF9_053
HL_04259.3
HL_4V8N_0791/BA/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_48778.2
HL_4V8N_0801/BA/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_4V8N_0811/BA/1631:1635No text annotation
homologous
HL_7RQB_041
NA
HL_4V8N_0821/BA/1691:1696No text annotation
homologous
HL_7RQB_042
NA
HL_4V8N_2381/BA/1719:1743No text annotation
geometric
HL_8G9Z_001
HL_75660.5
HL_4V8N_0841/BA/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_4V8N_0851/BA/1777:1787No text annotation
homologous
HL_5J7L_178
HL_01962.2
HL_4V8N_0861/BA/1806:1811GNRA
homologous
HL_7RQB_046
NA
HL_4V8N_0871/BA/1864:1878GNRA
homologous
HL_7RQB_047
NA
HL_4V8N_0881/BA/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_4V8N_0891/BA/1949:1957No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_4V8N_0901/BA/2027:2036No text annotation
homologous
HL_7RQB_050
NA
HL_4V8N_0911/BA/2143:2148No text annotation
homologous
HL_7RQB_051
NA
HL_4V8N_0921/BA/2205:2219No text annotation
geometric
HL_6U8D_003
HL_32346.3
HL_4V8N_0931/BA/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_4V8N_0941/BA/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_4V8N_0951/BA/2303:2313No text annotation
geometric
HL_8KAL_003
HL_75660.5
HL_4V8N_0961/BA/2324:2331Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_4V8N_0971/BA/2355:2362No text annotation
homologous
HL_7RQB_057
NA
HL_4V8N_0981/BA/2374:2379GNRA
homologous
HL_7RQB_058
NA
HL_4V8N_0991/BA/2404:2413No text annotation
homologous
HL_7RQB_059
NA
HL_4V8N_1001/BA/2471:2479No text annotation
homologous
HL_7RQB_060
NA
HL_4V8N_1011/BA/2528:2535No text annotation
homologous
HL_7RQB_061
NA
HL_4V8N_1021/BA/2551:2557No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_4V8N_1031/BA/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_4V8N_1041/BA/2658:2663GNRA
geometric
HL_5J7L_197
HL_37824.7
HL_4V8N_1051/BA/2701:2706No text annotation
homologous
HL_7RQB_065
NA
HL_4V8N_1061/BA/2745:2759No text annotation
homologous
HL_7RQB_066
NA
HL_4V8N_1081/BA/2819:2827No text annotation
homologous
HL_7RQB_068
NA
HL_4V8N_1091/BA/2856:2861GNRA
homologous
HL_7RQB_069
NA
HL_4V8N_1101/BB/38:44No text annotation
geometric
HL_7RQB_070
NA
HL_4V8N_1111/BB/86:91GNRA
homologous
HL_7A0S_070
HL_37824.7
HL_4V8N_1121/CA/12:22No text annotation
homologous
HL_4LFB_001
HL_89881.5
HL_4V8N_1141/CA/158:163GNRA
homologous
HL_4LFB_003
HL_37824.7
HL_4V8N_1151/CA/189C:189HNo text annotation
homologous
HL_6CZR_075
NA
HL_4V8N_1161/CA/200:217No text annotation
homologous
HL_6CZR_076
NA
HL_4V8N_1171/CA/259:267GNRA related
homologous
HL_4LFB_006
HL_84299.4
HL_4V8N_1181/CA/296:301GNRA
homologous
HL_4LFB_007
HL_37824.7
HL_4V8N_1191/CA/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_4V8N_2391/CA/342:347UNCG
homologous
HL_5J7L_009
HL_34617.5
HL_4V8N_1211/CA/377:386No text annotation
geometric
HL_8KAL_008
NA
HL_4V8N_1221/CA/419:424UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_4V8N_2401/CA/458:473GNRA
homologous
HL_4LFB_012
HL_37824.7
HL_4V8N_1241/CA/522:527No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_4V8N_1251/CA/617:623No text annotation
homologous
HL_4LFB_014
HL_10453.3
HL_4V8N_1261/CA/689:698No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_4V8N_1271/CA/726:731GNRA
homologous
HL_4LFB_016
HL_37824.7
HL_4V8N_1281/CA/786:796No text annotation
homologous
HL_4LFB_017
HL_75293.5
HL_4V8N_1291/CA/838:848Mini UNCG
homologous
HL_4LFB_018
HL_48778.2
HL_4V8N_1301/CA/862:867GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_4V8N_1311/CA/897:902GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_4V8N_1321/CA/963:972No text annotation
homologous
HL_4LFB_021
HL_50779.4
HL_4V8N_1331/CA/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.7
HL_4V8N_1341/CA/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.7
HL_4V8N_1351/CA/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_4V8N_1361/CA/1128:1143No text annotation
HL_4V8N_1371/CA/1164:1172GNRA with extra cWW
geometric
HL_7A0S_056
HL_04259.3
HL_4V8N_1381/CA/1265:1270GNRA
homologous
HL_4LFB_028
HL_37824.7
HL_4V8N_1391/CA/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_4V8N_1401/CA/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_4V8N_1411/CA/1445:1457UNCG
homologous
HL_5J7L_030
HL_34617.5
HL_4V8N_1421/CA/1515:1520GNRA
homologous
HL_4LFB_032
HL_37824.7
HL_4V8N_1451/CV/55:63T-loop with 2 stacked bulged bases
HL_28252.6
HL_4V8N_2411/CW/33:41No text annotation
HL_4V8N_1481/CY/13:24tRNA D-loop
homologous
HL_5B63_003
HL_20811.4
HL_4V8N_1501/CY/55:63T-loop with 2 stacked bulged bases
homologous
HL_1QTQ_003
HL_28252.6
HL_4V8N_1511/DA/59:68No text annotation
homologous
HL_7RQB_001
NA
HL_4V8N_1521/DA/87:95No text annotation
homologous
HL_7RQB_002
NA
HL_4V8N_1531/DA/123:128No text annotation
homologous
HL_7RQB_003
NA
HL_4V8N_1541/DA/139:142ANo text annotation
homologous
HL_7RQB_004
NA
HL_4V8N_1551/DA/154A:171No text annotation
HL_4V8N_1561/DA/194:201No text annotation
geometric
HL_5J7L_139
HL_30068.2
HL_4V8N_1571/DA/225:230No text annotation
homologous
HL_7RQB_007
NA
HL_4V8N_1581/DA/246:252No text annotation
homologous
HL_7RQB_008
NA
HL_4V8N_1591/DA/271J:271MNo text annotation
geometric
HL_6U8D_003
HL_32346.3
HL_4V8N_1601/DA/305:312No text annotation
homologous
HL_7RQB_010
NA
HL_4V8N_1611/DA/319:323No text annotation
homologous
HL_5J7L_143
HL_75660.5
HL_4V8N_1621/DA/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_4V8N_2321/DA/383:391No text annotation
HL_4V8N_1641/DA/410:417No text annotation
homologous
HL_7RQB_014
NA
HL_4V8N_1651/DA/462:467GNRA
homologous
HL_5J7L_147
HL_37824.7
HL_4V8N_1661/DA/487:493GNRA
homologous
HL_7RQB_016
NA
HL_4V8N_1671/DA/543:549No text annotation
homologous
HL_7RQB_017
NA
HL_4V8N_1681/DA/566:575No text annotation
geometric
HL_7RQB_018
NA
HL_4V8N_1691/DA/612:615No text annotation
homologous
HL_7RQB_019
NA
HL_4V8N_1701/DA/629:634GNRA
homologous
HL_4WF9_020
HL_37824.7
HL_4V8N_1711/DA/641:647No text annotation
homologous
HL_7RQB_021
NA
HL_4V8N_1731/DA/712:719No text annotation
homologous
HL_7RQB_022
NA
HL_4V8N_1741/DA/744:753No text annotation
homologous
HL_7RQB_023
NA
HL_4V8N_1751/DA/779:785No text annotation
homologous
HL_7A0S_023
HL_53890.2
HL_4V8N_1761/DA/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_4V8N_1781/DA/955:962GNRA
homologous
HL_7RQB_027
NA
HL_4V8N_1791/DA/978:985No text annotation
homologous
HL_7RQB_028
NA
HL_4V8N_1811/DA/1171:1178No text annotation
HL_4V8N_1821/DA/1222:1227GNRA
homologous
HL_7RQB_032
NA
HL_4V8N_1831/DA/1281:1289No text annotation
homologous
HL_7RQB_033
NA
HL_4V8N_1841/DA/1324:1330No text annotation
homologous
HL_7RQB_034
NA
HL_4V8N_1851/DA/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_4V8N_1861/DA/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_4V8N_1871/DA/1450A:1461Pseudoknot
homologous
HL_7A0S_036
HL_93135.1
HL_4V8N_1881/DA/1492:1498No text annotation
HL_4V8N_1891/DA/1531:1538GNRA with extra cWW
geometric
HL_4WF9_053
HL_04259.3
HL_4V8N_1901/DA/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_48778.2
HL_4V8N_1911/DA/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_4V8N_1921/DA/1631:1635No text annotation
homologous
HL_7RQB_041
NA
HL_4V8N_1931/DA/1691:1696No text annotation
homologous
HL_7RQB_042
NA
HL_4V8N_2421/DA/1719:1743No text annotation
geometric
HL_8G9Z_001
HL_75660.5
HL_4V8N_1951/DA/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_4V8N_1961/DA/1777:1787No text annotation
homologous
HL_5J7L_178
HL_01962.2
HL_4V8N_1971/DA/1806:1811GNRA
homologous
HL_7RQB_046
NA
HL_4V8N_1981/DA/1864:1878GNRA
homologous
HL_7RQB_047
NA
HL_4V8N_1991/DA/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_4V8N_2001/DA/1949:1957No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_4V8N_2011/DA/2027:2036No text annotation
homologous
HL_7RQB_050
NA
HL_4V8N_2031/DA/2205:2219No text annotation
geometric
HL_6U8D_003
HL_32346.3
HL_4V8N_2041/DA/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_4V8N_2051/DA/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_4V8N_2061/DA/2303:2313No text annotation
geometric
HL_8KAL_003
HL_75660.5
HL_4V8N_2071/DA/2324:2331Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_4V8N_2081/DA/2355:2362No text annotation
homologous
HL_7RQB_057
NA
HL_4V8N_2091/DA/2374:2379GNRA
homologous
HL_7RQB_058
NA
HL_4V8N_2101/DA/2404:2413No text annotation
homologous
HL_7RQB_059
NA
HL_4V8N_2111/DA/2471:2479No text annotation
homologous
HL_7RQB_060
NA
HL_4V8N_2121/DA/2528:2535No text annotation
homologous
HL_7RQB_061
NA
HL_4V8N_2131/DA/2551:2557No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_4V8N_2141/DA/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_4V8N_2151/DA/2658:2663GNRA
homologous
HL_5J7L_197
HL_37824.7
HL_4V8N_2161/DA/2701:2706No text annotation
homologous
HL_7RQB_065
NA
HL_4V8N_2171/DA/2745:2759No text annotation
homologous
HL_7RQB_066
NA
HL_4V8N_2191/DA/2819:2827No text annotation
homologous
HL_7RQB_068
NA
HL_4V8N_2201/DA/2856:2861GNRA
homologous
HL_7RQB_069
NA
HL_4V8N_2211/DB/38:44No text annotation
geometric
HL_7RQB_070
NA
HL_4V8N_2221/DB/86:91GNRA
homologous
HL_7A0S_070
HL_37824.7

Problematic loops

#loop idProblemSequence
HL_4V8N_002No text annotation
HL_4V8N_223No text annotation
HL_4V8N_009No text annotation
HL_4V8N_224No text annotation
HL_4V8N_012No text annotation
HL_4V8N_225tRNA anticodon loop
HL_4V8N_033No text annotation
HL_4V8N_035No text annotation
HL_4V8N_237No text annotation
HL_4V8N_036T-loop with 2 stacked bulged bases
HL_4V8N_038No text annotation
HL_4V8N_052No text annotation
HL_4V8N_061No text annotation
HL_4V8N_227No text annotation
HL_4V8N_069No text annotation
HL_4V8N_070No text annotation
HL_4V8N_083tRNA D-loop
HL_4V8N_228No text annotation
HL_4V8N_107tRNA D-loop
HL_4V8N_113No text annotation
HL_4V8N_229No text annotation
HL_4V8N_120No text annotation
HL_4V8N_230No text annotation
HL_4V8N_123No text annotation
HL_4V8N_231tRNA anticodon loop
HL_4V8N_143No text annotation
HL_4V8N_144No text annotation
HL_4V8N_146No text annotation
HL_4V8N_147T-loop with 2 stacked bulged bases
HL_4V8N_149No text annotation
HL_4V8N_163No text annotation
HL_4V8N_172No text annotation
HL_4V8N_233No text annotation
HL_4V8N_177No text annotation
HL_4V8N_180No text annotation
HL_4V8N_194tRNA D-loop
HL_4V8N_202No text annotation
HL_4V8N_234No text annotation
HL_4V8N_218tRNA D-loop

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V8N_0011/AA/30:32,
1/AA/552:553		Single bulged G
homologous
IL_4LFB_001
IL_00225.13
IL_4V8N_0021/AA/44:45,
1/AA/396:398		Single bulged A
homologous
IL_4LFB_002
IL_31462.5
IL_4V8N_0031/AA/47:52,
1/AA/359:361		No text annotation
homologous
IL_4LFB_003
IL_14177.2
IL_4V8N_0041/AA/54:56,
1/AA/356:357		Minor groove platform
homologous
IL_6CZR_116
NA
IL_4V8N_0051/AA/63:66,
1/AA/103:104		Multiple bulged bases
homologous
IL_4LFB_005
IL_82107.4
IL_4V8N_0081/AA/129:131,
1/AA/231:232		Multiple bulged bases
homologous
IL_4LFB_007
IL_33761.2
IL_4V8N_0091/AA/132:136,
1/AA/227:230		No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_4V8N_4151/AA/148:153,
1/AA/168:174		tWH-tWH-tHW-tHW
homologous
IL_4LFB_009
IL_12745.1
IL_4V8N_0121/AA/186:188,
1/AA/189L:191		Isolated non-canonical cWW pair
homologous
IL_4LFB_010
IL_87907.2
IL_4V8N_0131/AA/242:247,
1/AA/277:284		Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.3
IL_4V8N_0141/AA/249:252,
1/AA/274:275		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_4V8N_0151/AA/292:293,
1/AA/304:308		C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_4V8N_0161/AA/367:369,
1/AA/392:393		Single bulged U
homologous
IL_4LFB_014
IL_89505.4
IL_4V8N_4161/AA/371:375,
1/AA/389:390		C-loop
homologous
IL_5J7L_018
IL_03109.3
IL_4V8N_0181/AA/375:376,
1/AA/387:389		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_4V8N_0191/AA/409:416,
1/AA/427:433		No text annotation
homologous
IL_4LFB_017
IL_28026.3
IL_4V8N_0201/AA/446:450,
1/AA/483:488		6x5 Sarcin-Ricin; G-bulge
homologous
IL_4LFB_018
IL_88269.4
IL_4V8N_3771/AA/450:456,
1/AA/475:483		No text annotation
homologous
IL_6CZR_131
NA
IL_4V8N_0211/AA/504:511,
1/AA/540:541		SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_4V8N_0221/AA/515:521,
1/AA/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_4V8N_0231/AA/569:575,
1/AA/880:881		No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_4V8N_0241/AA/580:584,
1/AA/757:761		tSH-tHW-tHS
homologous
IL_4LFB_023
IL_17136.7
IL_4V8N_0251/AA/594:596,
1/AA/644:645		Major groove platform
homologous
IL_4LFB_024
IL_48076.6
IL_4V8N_0261/AA/597:598,
1/AA/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.4
IL_4V8N_0281/AA/605:612,
1/AA/628:633		No text annotation
homologous
IL_4LFB_026
IL_78349.3
IL_4V8N_0291/AA/654:655,
1/AA/751:754		Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_50694.7
IL_4V8N_0301/AA/657:658,
1/AA/747:749		Major groove platform
homologous
IL_4LFB_028
IL_48076.6
IL_4V8N_0311/AA/662:666,
1/AA/740:743		Tandem non-canonical cWW pairs
homologous
IL_4LFB_029
IL_85033.2
IL_4V8N_0321/AA/683:688,
1/AA/699:707		Kink-turn
homologous
IL_4LFB_031
IL_95727.1
IL_4V8N_0331/AA/774:778,
1/AA/804:805		Left turn
homologous
IL_5J7L_036
IL_29346.2
IL_4V8N_0341/AA/779:783,
1/AA/799:803		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_4V8N_0361/AA/887:894,
1/AA/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.4
IL_4V8N_0371/AA/922:923,
1/AA/1393:1395		Single bulged A
homologous
IL_5J7L_039
IL_31462.5
IL_4V8N_0381/AA/925:927,
1/AA/1390:1391		Single bulged G
homologous
IL_4LFB_036
IL_00225.13
IL_4V8N_0391/AA/933:935,
1/AA/1380:1384		Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_4V8N_0401/AA/941:943,
1/AA/1340:1342		Isolated cWS basepair
geometric
IL_4TS2_003
NA
IL_4V8N_4171/AA/953:954,
1/AA/1226:1228		Minor groove platform
homologous
IL_5J7L_042
IL_51454.2
IL_4V8N_0421/AA/993:1000,
1/AA/1041:1045		No text annotation
IL_4V8N_4181/AA/1001:1007,
1/AA/1022:1040		No text annotation
IL_4V8N_0451/AA/1048:1050,
1/AA/1208:1209		Single bulged U
homologous
IL_4LFB_042
IL_89505.4
IL_4V8N_0461/AA/1052:1056,
1/AA/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_4V8N_3821/AA/1052:1058,
1/AA/1199:1206		No text annotation
geometric
IL_4V88_510
NA
IL_4V8N_0471/AA/1057:1058,
1/AA/1199:1203		Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_4V8N_0481/AA/1060:1061,
1/AA/1195:1197		Single bulged U
geometric
IL_6CZR_156
NA
IL_4V8N_0491/AA/1061:1063,
1/AA/1193:1195		Isolated non-canonical cWW pair
homologous
IL_4LFB_047
IL_28037.2
IL_4V8N_0511/AA/1124:1127,
1/AA/1145:1149		No text annotation
IL_4V8N_4191/AA/1124:1128,
1/AA/1143:1149		No text annotation
homologous
IL_4LFB_048
IL_85222.1
IL_4V8N_0521/AA/1127:1128,
1/AA/1143:1145		No text annotation
IL_4V8N_0531/AA/1247:1253,
1/AA/1284:1290		No text annotation
homologous
IL_4LFB_051
IL_09129.2
IL_4V8N_0541/AA/1255:1262,
1/AA/1273:1282		No text annotation
IL_4V8N_3851/AA/1303:1308,
1/AA/1329:1334		No text annotation
homologous
IL_4LFB_055
IL_85536.2
IL_4V8N_0561/AA/1399:1401,
1/AA/1501:1504		No text annotation
homologous
IL_4LFB_056
IL_61438.4
IL_4V8N_0571/AA/1401:1404,
1/AA/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_4V8N_0581/AA/1405:1407,
1/AA/1494:1496		Isolated non-canonical cWW pair
geometric
IL_1ZZ5_002
IL_87907.2
IL_4V8N_0591/AA/1407:1409,
1/AA/1491:1494		Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_4V8N_0601/AA/1412:1414,
1/AA/1486:1488		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_4V8N_0611/AA/1416:1419,
1/AA/1481:1484		Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_4V8N_0621/AA/1431:1435,
1/AA/1466:1469		UAA/GAN variation
geometric
IL_4LFB_062
IL_77691.5
IL_4V8N_4201/AA/1435:1437,
1/AA/1464:1466		Isolated non-canonical cWW pair
homologous
IL_4LFB_063
IL_87907.2
IL_4V8N_0641/AA/1440:1443,
1/AA/1459:1461		Isolated basepair with bulged bases
homologous
IL_6CZR_172
NA
IL_4V8N_0691/BA/24:30,
1/BA/510:516		Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA
IL_4V8N_0701/BA/36:37,
1/BA/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_4V8N_0711/BA/42:43,
1/BA/434:436		Minor groove platform
homologous
IL_7RQB_003
NA
IL_4V8N_0721/BA/81:85,
1/BA/97:105		Kink-turn
homologous
IL_7RQB_004
NA
IL_4V8N_0731/BA/183:184,
1/BA/212:214		Single stack bend
homologous
IL_7RQB_005
NA
IL_4V8N_0741/BA/188:194,
1/BA/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
NA
IL_4V8N_0751/BA/239:245,
1/BA/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA
IL_4V8N_0761/BA/271I:271J,
1/BA/271M:271O		Single bulged U
homologous
IL_7RQB_008
NA
IL_4V8N_0771/BA/272D:272E,
1/BA/363E:364		Major groove platform
homologous
IL_7RQB_009
NA
IL_4V8N_4211/BA/272J:278,
1/BA/362:363		No text annotation
IL_4V8N_0791/BA/280:284,
1/BA/357:360		tSH-tHW
geometric
IL_7RQB_011
NA
IL_4V8N_0801/BA/288:290,
1/BA/350:353		Isolated tHS basepair with bulges
homologous
IL_7RQB_012
NA
IL_4V8N_0811/BA/293:295,
1/BA/343:347		No text annotation
homologous
IL_7RQB_013
NA
IL_4V8N_0821/BA/481:484,
1/BA/496:509		No text annotation
homologous
IL_7RQB_014
NA
IL_4V8N_0831/BA/564:566,
1/BA/575:577		Isolated non-canonical cWW pair
geometric
IL_5J7L_257
IL_07785.1
IL_4V8N_0841/BA/606:610,
1/BA/618:622		AAA cross-strand stack
homologous
IL_4WF9_019
IL_66798.2
IL_4V8N_0851/BA/672:674,
1/BA/806:808		No text annotation
geometric
IL_7RQB_017
NA
IL_4V8N_0861/BA/674:678,
1/BA/799:806		tHW-tHW cross-strand stack
homologous
IL_4WF9_021
IL_54041.2
IL_4V8N_0871/BA/697:698,
1/BA/763:765		Single bulged A
geometric
IL_7RQB_019
NA
IL_4V8N_0881/BA/702:703,
1/BA/728:730		Single bulged G
geometric
IL_7RQB_020
NA
IL_4V8N_0891/BA/703:707,
1/BA/724:728		Triple sheared
homologous
IL_7RQB_021
NA
IL_4V8N_0901/BA/738:741,
1/BA/756:758		Major groove platform with extra cWW
homologous
IL_7A0S_019
IL_51387.2
IL_4V8N_0911/BA/775:777,
1/BA/787:791		Multiple bulged bases
homologous
IL_7RQB_023
NA
IL_4V8N_0921/BA/837:838,
1/BA/940:942		Single stack bend
homologous
IL_7RQB_024
NA
IL_4V8N_0931/BA/844:846,
1/BA/931:934		Intercalated cWW
geometric
IL_7RQB_025
NA
IL_4V8N_0941/BA/846:850,
1/BA/927:931		No text annotation
homologous
IL_7RQB_026
NA
IL_4V8N_0951/BA/858:862,
1/BA/915:919		5x5 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_7RQB_027
NA
IL_4V8N_0961/BA/862:863,
1/BA/913:915		Minor groove platform
geometric
IL_7RQB_028
NA
IL_4V8N_0971/BA/864:868,
1/BA/909:912		C-loop
homologous
IL_7RQB_029
NA
IL_4V8N_0991/BA/875:879,
1/BA/898:902		Triple sheared
homologous
IL_5J7L_274
IL_17948.2
IL_4V8N_1001/BA/880:881,
1/BA/895:897		Single bulged A
homologous
IL_7RQB_033
NA
IL_4V8N_4221/BA/880:883,
1/BA/893:897		Tandem non-canonical cWW pairs
geometric
IL_3WBM_003
IL_85033.2
IL_4V8N_1021/BA/952:954,
1/BA/963:965		No text annotation
homologous
IL_7RQB_034
NA
IL_4V8N_1031/BA/994:996,
1/BA/1159:1160		Single bulged C
homologous
IL_7RQB_035
NA
IL_4V8N_1041/BA/998:1002,
1/BA/1153:1157		UAA/GAN
homologous
IL_7RQB_036
NA
IL_4V8N_1051/BA/1004:1011,
1/BA/1150:1151		SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_4V8N_1061/BA/1011:1013,
1/BA/1149:1150		Single bulged U
homologous
IL_7RQB_038
NA
IL_4V8N_1071/BA/1018:1024,
1/BA/1140:1144		Kink-turn related
geometric
IL_4WF9_039
IL_57188.5
IL_4V8N_1081/BA/1024:1030,
1/BA/1124:1140		No text annotation
geometric
IL_7RQB_040
NA
IL_4V8N_1091/BA/1031:1034,
1/BA/1121:1123		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
IL_57744.1
IL_4V8N_1111/BA/1196:1198,
1/BA/1247:1250		Isolated cWS basepair
homologous
IL_7RQB_045
NA
IL_4V8N_1121/BA/1202:1206,
1/BA/1240:1243		No text annotation
homologous
IL_7RQB_046
NA
IL_4V8N_1131/BA/1208:1215,
1/BA/1234:1238		Kink-turn
homologous
IL_7RQB_047
NA
IL_4V8N_1141/BA/1219:1221,
1/BA/1229:1230		Single bulged A
homologous
IL_7RQB_048
NA
IL_4V8N_1151/BA/1262:1269,
1/BA/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA
IL_4V8N_1161/BA/1310:1313,
1/BA/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_4V8N_1171/BA/1319:1323,
1/BA/1331:1333		C-loop
homologous
IL_7RQB_051
NA
IL_4V8N_1181/BA/1351:1355,
1/BA/1376:1380		UAA/GAN
homologous
IL_7RQB_052
NA
IL_4V8N_1191/BA/1357:1361,
1/BA/1370:1374		tSH-tHW-tHS
homologous
IL_4WF9_052
IL_17136.7
IL_4V8N_1201/BA/1415:1416,
1/BA/1582:1587		No text annotation
homologous
IL_7RQB_054
NA
IL_4V8N_1211/BA/1417:1421,
1/BA/1577:1581		UAA/GAN
homologous
IL_7RQB_055
NA
IL_4V8N_1221/BA/1433:1435,
1/BA/1557:1560		Isolated tWW turn
homologous
IL_7RQB_056
NA
IL_4V8N_1231/BA/1437:1440,
1/BA/1551:1555		tSH-tHW
homologous
IL_7RQB_057
NA
IL_4V8N_1241/BA/1448:1450,
1/BA/1462:1463		Single stack bend
homologous
IL_7RQB_058
NA
IL_4V8N_1251/BA/1469:1473,
1/BA/1518:1523		UAA/GAN
homologous
IL_7RQB_060
NA
IL_4V8N_1261/BA/1481:1482,
1/BA/1506:1510		No text annotation
homologous
IL_7RQB_061
NA
IL_4V8N_1271/BA/1482:1486,
1/BA/1503:1506		Tandem non-canonical cWW pairs
geometric
IL_5EW4_002
IL_85033.2
IL_4V8N_1281/BA/1489:1491,
1/BA/1499:1500		Single bulged A
homologous
IL_7RQB_062
NA
IL_4V8N_1291/BA/1526:1529,
1/BA/1540:1546		No text annotation
IL_4V8N_3901/BA/1526:1531,
1/BA/1538:1546		No text annotation
IL_4V8N_1301/BA/1651:1656,
1/BA/2004:2006		No text annotation
homologous
IL_7RQB_064
NA
IL_4V8N_1311/BA/1663:1665,
1/BA/1995:1997		Isolated tWW turn
homologous
IL_5J7L_305
IL_67095.2
IL_4V8N_1321/BA/1666:1669,
1/BA/1993:1994		Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_4V8N_3911/BA/1666:1674,
1/BA/1990:1994		No text annotation
homologous
IL_9DFE_066
IL_22854.4
IL_4V8N_1331/BA/1669:1674,
1/BA/1990:1993		Intercalated tWH
homologous
IL_7RQB_067
NA
IL_4V8N_1341/BA/1686:1691,
1/BA/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_5J7L_308
IL_47346.2
IL_4V8N_1351/BA/1770:1771,
1/BA/1980:1982		Single bulged A
homologous
IL_7RQB_069
NA
IL_4V8N_1361/BA/1798:1804,
1/BA/1813:1821		Kink-turn related
homologous
IL_7RQB_070
NA
IL_4V8N_1371/BA/1837:1840,
1/BA/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_4V8N_1381/BA/1841:1842,
1/BA/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.4
IL_4V8N_1391/BA/1846:1849,
1/BA/1893:1894		Minor groove platform
homologous
IL_7RQB_073
NA
IL_4V8N_1401/BA/1851:1855,
1/BA/1887:1891		UAA/GAN with extra pair
homologous
IL_7RQB_074
NA
IL_4V8N_1411/BA/1856:1860,
1/BA/1882:1886		Triple sheared
homologous
IL_7RQB_075
NA
IL_4V8N_1421/BA/1933:1934,
1/BA/1964:1967		Bulged stacked bases
homologous
IL_7RQB_076
NA
IL_4V8N_1431/BA/1934:1945,
1/BA/1961:1964		No text annotation
geometric
IL_4WF9_077
IL_42218.2
IL_4V8N_1441/BA/2050:2052,
1/BA/2617:2618		Major groove platform
homologous
IL_7RQB_078
NA
IL_4V8N_1451/BA/2054:2057,
1/BA/2611:2615		No text annotation
homologous
IL_7RQB_079
NA
IL_4V8N_1461/BA/2067:2069,
1/BA/2442:2443		Single bulged U
homologous
IL_7RQB_080
NA
IL_4V8N_1471/BA/2070:2071,
1/BA/2438:2441		Minor groove platform
homologous
IL_7RQB_081
NA
IL_4V8N_1481/BA/2081:2083,
1/BA/2236:2239		Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_4V8N_1491/BA/2085:2087,
1/BA/2232:2234		No text annotation
homologous
IL_7RQB_083
NA
IL_4V8N_1531/BA/2108:2122,
1/BA/2176:2181		No text annotation
IL_4V8N_3921/BA/2108:2127,
1/BA/2161:2181		No text annotation
IL_4V8N_1541/BA/2124:2127,
1/BA/2161:2174		No text annotation
geometric
IL_3U4M_003
IL_75283.2
IL_4V8N_1581/BA/2297:2299,
1/BA/2317:2321		Isolated tHS basepair with bulges
geometric
IL_7RQB_088
NA
IL_4V8N_1591/BA/2350:2353,
1/BA/2364:2367		Double sheared
homologous
IL_7RQB_089
NA
IL_4V8N_1601/BA/2401:2403,
1/BA/2414:2415		Single bulged U
homologous
IL_5J7L_334
IL_89505.4
IL_4V8N_1611/BA/2453:2454,
1/BA/2498:2500		Single stack bend
homologous
IL_7RQB_091
NA
IL_4V8N_1621/BA/2454:2455,
1/BA/2496:2498		Major groove platform
geometric
IL_7RQB_092
NA
IL_4V8N_1631/BA/2457:2459,
1/BA/2493:2494		Major groove platform
homologous
IL_4WF9_091
IL_48076.6
IL_4V8N_1641/BA/2459:2461,
1/BA/2489:2493		Major groove minor groove platform with extra cWW
geometric
IL_7RQB_094
NA
IL_4V8N_1651/BA/2466:2470,
1/BA/2480:2484		Triple sheared
homologous
IL_5J7L_338
IL_17948.2
IL_4V8N_1661/BA/2507:2508,
1/BA/2580:2582		Major groove platform
homologous
IL_7RQB_096
NA
IL_4V8N_1671/BA/2510:2512,
1/BA/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA
IL_4V8N_1681/BA/2512:2513,
1/BA/2571:2574		Multiple bulged bases
geometric
IL_7RQB_098
NA
IL_4V8N_1691/BA/2522:2523,
1/BA/2540:2543		Major groove platform with intercalation
homologous
IL_7RQB_099
NA
IL_4V8N_1711/BA/2591:2592,
1/BA/2601:2603		Single bulged A
homologous
IL_7RQB_101
NA
IL_4V8N_1721/BA/2636:2640,
1/BA/2774:2782		tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_4V8N_1731/BA/2652:2658,
1/BA/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7RQB_103
NA
IL_4V8N_1741/BA/2680:2684,
1/BA/2725:2727		C-loop
homologous
IL_5J7L_347
IL_63596.11
IL_4V8N_1751/BA/2687:2691,
1/BA/2718:2722		No text annotation
homologous
IL_7RQB_105
NA
IL_4V8N_1761/BA/2695:2696,
1/BA/2711:2714		Multiple bulged bases
homologous
IL_7RQB_106
NA
IL_4V8N_1771/BA/2737:2742,
1/BA/2762:2767		UAA/GAN with extra cWW
homologous
IL_7RQB_107
NA
IL_4V8N_1781/BA/2838:2839,
1/BA/2878:2880		Single bulged C
homologous
IL_7RQB_108
NA
IL_4V8N_1791/BA/2843:2846,
1/BA/2870:2874		No text annotation
homologous
IL_7RQB_109
NA
IL_4V8N_1801/BA/2847:2852,
1/BA/2865:2869		tHS double platform
homologous
IL_7RQB_110
NA
IL_4V8N_1811/BB/17:18,
1/BB/65:67		Major groove intercalation
homologous
IL_4V9F_101
IL_31462.5
IL_4V8N_1831/BB/23:28,
1/BB/56:60		No text annotation
geometric
IL_5J7L_356
IL_18472.4
IL_4V8N_1841/BB/30:31,
1/BB/51:54		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_4V8N_1851/BB/34:38,
1/BB/44:48		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_4V8N_1861/BB/71:79,
1/BB/98:106		Bacterial 5S Loop E
homologous
IL_7RQB_115
NA
IL_4V8N_1881/CA/30:32,
1/CA/552:553		Single bulged G
homologous
IL_4LFB_001
IL_00225.13
IL_4V8N_1891/CA/44:45,
1/CA/396:398		Single bulged A
homologous
IL_4LFB_002
IL_31462.5
IL_4V8N_1901/CA/47:52,
1/CA/359:361		No text annotation
homologous
IL_4LFB_003
IL_14177.2
IL_4V8N_1911/CA/54:56,
1/CA/356:357		Minor groove platform
homologous
IL_6CZR_116
NA
IL_4V8N_1921/CA/63:66,
1/CA/103:104		Multiple bulged bases
homologous
IL_4LFB_005
IL_82107.4
IL_4V8N_1931/CA/67:69,
1/CA/100:102		Isolated non-canonical cWW pair
homologous
IL_4LFB_006
IL_87907.2
IL_4V8N_1951/CA/129:131,
1/CA/231:232		Multiple bulged bases
homologous
IL_4LFB_007
IL_33761.2
IL_4V8N_1961/CA/132:136,
1/CA/227:230		No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_4V8N_4251/CA/148:153,
1/CA/168:174		tWH-tWH-tHW-tHW
homologous
IL_4LFB_009
IL_12745.1
IL_4V8N_1991/CA/186:188,
1/CA/189L:191		Isolated non-canonical cWW pair
homologous
IL_4LFB_010
IL_87907.2
IL_4V8N_2001/CA/242:247,
1/CA/277:284		Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.3
IL_4V8N_2011/CA/249:252,
1/CA/274:275		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_4V8N_2021/CA/292:293,
1/CA/304:308		C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_4V8N_2031/CA/367:369,
1/CA/392:393		Single bulged U
homologous
IL_4LFB_014
IL_89505.4
IL_4V8N_4261/CA/371:375,
1/CA/389:390		C-loop
homologous
IL_5J7L_018
IL_03109.3
IL_4V8N_2051/CA/375:376,
1/CA/387:389		Single bulged G
homologous
IL_5J7L_019
IL_00225.13
IL_4V8N_2061/CA/409:416,
1/CA/427:433		No text annotation
homologous
IL_4LFB_017
IL_28026.3
IL_4V8N_2071/CA/446:450,
1/CA/483:488		6x5 Sarcin-Ricin; G-bulge
homologous
IL_4LFB_018
IL_88269.4
IL_4V8N_3971/CA/450:456,
1/CA/475:483		No text annotation
homologous
IL_6CZR_131
NA
IL_4V8N_2081/CA/504:511,
1/CA/540:541		SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_4V8N_2091/CA/515:521,
1/CA/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_4V8N_2101/CA/569:575,
1/CA/880:881		No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_4V8N_2111/CA/580:584,
1/CA/757:761		tSH-tHW-tHS
homologous
IL_4LFB_023
IL_17136.7
IL_4V8N_2121/CA/594:596,
1/CA/644:645		Major groove platform
homologous
IL_4LFB_024
IL_48076.6
IL_4V8N_2131/CA/597:598,
1/CA/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.4
IL_4V8N_2151/CA/605:612,
1/CA/628:633		No text annotation
geometric
IL_4LFB_026
IL_78349.3
IL_4V8N_2161/CA/654:655,
1/CA/751:754		Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_50694.7
IL_4V8N_2171/CA/657:658,
1/CA/747:749		Major groove platform
homologous
IL_4LFB_028
IL_48076.6
IL_4V8N_2181/CA/662:666,
1/CA/740:743		Tandem non-canonical cWW pairs
homologous
IL_4LFB_029
IL_85033.2
IL_4V8N_2191/CA/683:688,
1/CA/699:707		Kink-turn
homologous
IL_4LFB_031
IL_95727.1
IL_4V8N_2201/CA/774:778,
1/CA/804:805		Left turn
homologous
IL_5J7L_036
IL_29346.2
IL_4V8N_2211/CA/779:783,
1/CA/799:803		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_4V8N_2231/CA/887:894,
1/CA/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.4
IL_4V8N_2241/CA/922:923,
1/CA/1393:1395		Single bulged A
homologous
IL_5J7L_039
IL_31462.5
IL_4V8N_2251/CA/925:927,
1/CA/1390:1391		Single bulged G
homologous
IL_4LFB_036
IL_00225.13
IL_4V8N_2261/CA/933:935,
1/CA/1380:1384		Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_4V8N_2271/CA/941:943,
1/CA/1340:1342		Isolated cWS basepair
geometric
IL_4TS2_003
NA
IL_4V8N_4271/CA/953:954,
1/CA/1226:1228		Minor groove platform
homologous
IL_5J7L_042
IL_51454.2
IL_4V8N_2291/CA/993:1000,
1/CA/1041:1045		No text annotation
IL_4V8N_4281/CA/1001:1007,
1/CA/1022:1040		No text annotation
IL_4V8N_2321/CA/1048:1050,
1/CA/1208:1209		Single bulged U
homologous
IL_4LFB_042
IL_89505.4
IL_4V8N_2331/CA/1052:1056,
1/CA/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_4V8N_4021/CA/1052:1058,
1/CA/1199:1206		No text annotation
geometric
IL_4V88_510
NA
IL_4V8N_2341/CA/1057:1058,
1/CA/1199:1203		Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_4V8N_4031/CA/1058:1063,
1/CA/1193:1199		No text annotation
geometric
IL_5TBW_476
NA
IL_4V8N_2351/CA/1060:1061,
1/CA/1195:1197		Single bulged U
homologous
IL_6CZR_156
NA
IL_4V8N_2361/CA/1061:1063,
1/CA/1193:1195		Isolated non-canonical cWW pair
geometric
IL_4P43_001
NA
IL_4V8N_2381/CA/1124:1127,
1/CA/1145:1149		No text annotation
IL_4V8N_4291/CA/1124:1128,
1/CA/1143:1149		No text annotation
homologous
IL_4LFB_048
IL_85222.1
IL_4V8N_2391/CA/1127:1128,
1/CA/1143:1145		No text annotation
IL_4V8N_2401/CA/1247:1253,
1/CA/1284:1290		No text annotation
homologous
IL_4LFB_051
IL_09129.2
IL_4V8N_2411/CA/1255:1262,
1/CA/1273:1282		No text annotation
IL_4V8N_4061/CA/1303:1308,
1/CA/1329:1334		No text annotation
homologous
IL_4LFB_055
IL_85536.2
IL_4V8N_2431/CA/1399:1401,
1/CA/1501:1504		No text annotation
geometric
IL_4V88_463
NA
IL_4V8N_2441/CA/1401:1404,
1/CA/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_4V8N_2451/CA/1405:1409,
1/CA/1491:1496		Partly complementary
homologous
IL_6CZR_167
NA
IL_4V8N_2461/CA/1412:1414,
1/CA/1486:1488		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_4V8N_2471/CA/1416:1419,
1/CA/1481:1484		Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_4V8N_2481/CA/1431:1435,
1/CA/1466:1469		UAA/GAN variation
geometric
IL_4LFB_062
IL_77691.5
IL_4V8N_2491/CA/1435:1437,
1/CA/1464:1466		Isolated non-canonical cWW pair
homologous
IL_4LFB_063
IL_87907.2
IL_4V8N_2501/CA/1440:1443,
1/CA/1459:1461		No text annotation
homologous
IL_4LFB_064
IL_49061.1
IL_4V8N_2541/DA/24:30,
1/DA/510:516		Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA
IL_4V8N_2551/DA/36:37,
1/DA/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_4V8N_2561/DA/42:43,
1/DA/434:436		Minor groove platform
homologous
IL_7RQB_003
NA
IL_4V8N_2571/DA/81:85,
1/DA/97:105		Kink-turn
homologous
IL_7RQB_004
NA
IL_4V8N_2581/DA/183:184,
1/DA/212:214		Single stack bend
homologous
IL_7RQB_005
NA
IL_4V8N_2591/DA/188:194,
1/DA/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
NA
IL_4V8N_2601/DA/239:245,
1/DA/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA
IL_4V8N_2611/DA/271I:271J,
1/DA/271M:271O		Single bulged U
homologous
IL_7RQB_008
NA
IL_4V8N_2621/DA/272D:272E,
1/DA/363E:364		Major groove platform
homologous
IL_7RQB_009
NA
IL_4V8N_4301/DA/272J:278,
1/DA/362:363		No text annotation
IL_4V8N_2641/DA/280:284,
1/DA/357:360		tSH-tHW
homologous
IL_7RQB_011
NA
IL_4V8N_2651/DA/288:290,
1/DA/350:353		Isolated tHS basepair with bulges
homologous
IL_7RQB_012
NA
IL_4V8N_2661/DA/293:295,
1/DA/343:347		No text annotation
homologous
IL_7RQB_013
NA
IL_4V8N_2671/DA/481:484,
1/DA/496:509		No text annotation
homologous
IL_7RQB_014
NA
IL_4V8N_2681/DA/564:566,
1/DA/575:577		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
IL_07785.1
IL_4V8N_2691/DA/606:610,
1/DA/618:622		AAA cross-strand stack
homologous
IL_4WF9_019
IL_66798.2
IL_4V8N_2701/DA/672:674,
1/DA/806:808		No text annotation
homologous
IL_7RQB_017
NA
IL_4V8N_2711/DA/674:678,
1/DA/799:806		tHW-tHW cross-strand stack
geometric
IL_4WF9_021
IL_54041.2
IL_4V8N_2721/DA/697:698,
1/DA/763:765		Single bulged A
homologous
IL_7RQB_019
NA
IL_4V8N_2731/DA/702:703,
1/DA/728:730		Single bulged G
geometric
IL_7RQB_020
NA
IL_4V8N_2741/DA/703:707,
1/DA/724:728		Triple sheared
homologous
IL_7RQB_021
NA
IL_4V8N_2751/DA/738:741,
1/DA/756:758		Major groove platform with extra cWW
homologous
IL_7A0S_019
IL_51387.2
IL_4V8N_2761/DA/775:777,
1/DA/787:791		Multiple bulged bases
homologous
IL_7RQB_023
NA
IL_4V8N_2771/DA/837:838,
1/DA/940:942		Single stack bend
homologous
IL_7RQB_024
NA
IL_4V8N_2781/DA/844:846,
1/DA/931:934		Intercalated cWW
homologous
IL_7RQB_025
NA
IL_4V8N_2791/DA/846:850,
1/DA/927:931		No text annotation
geometric
IL_7RQB_026
NA
IL_4V8N_2801/DA/858:862,
1/DA/915:919		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7RQB_027
NA
IL_4V8N_2811/DA/862:863,
1/DA/913:915		Minor groove platform
homologous
IL_7RQB_028
NA
IL_4V8N_2821/DA/864:868,
1/DA/909:912		C-loop
homologous
IL_7RQB_029
NA
IL_4V8N_2841/DA/875:879,
1/DA/898:902		Triple sheared
homologous
IL_5J7L_274
IL_17948.2
IL_4V8N_2871/DA/952:954,
1/DA/963:965		No text annotation
homologous
IL_7RQB_034
NA
IL_4V8N_2881/DA/994:996,
1/DA/1159:1160		Single bulged C
homologous
IL_7RQB_035
NA
IL_4V8N_2891/DA/998:1002,
1/DA/1153:1157		UAA/GAN
homologous
IL_7RQB_036
NA
IL_4V8N_2901/DA/1004:1011,
1/DA/1150:1151		SSU/LSU pseudoknot
homologous
IL_7RQB_037
NA
IL_4V8N_2911/DA/1011:1013,
1/DA/1149:1150		Single bulged U
geometric
IL_7RQB_038
NA
IL_4V8N_2921/DA/1018:1024,
1/DA/1140:1144		Kink-turn related
homologous
IL_4WF9_039
IL_57188.5
IL_4V8N_2931/DA/1024:1030,
1/DA/1124:1140		No text annotation
geometric
IL_7RQB_040
NA
IL_4V8N_2941/DA/1031:1034,
1/DA/1121:1123		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
IL_57744.1
IL_4V8N_2961/DA/1196:1198,
1/DA/1247:1250		Isolated cWS basepair
homologous
IL_7RQB_045
NA
IL_4V8N_2971/DA/1202:1206,
1/DA/1240:1243		No text annotation
homologous
IL_7RQB_046
NA
IL_4V8N_2981/DA/1208:1215,
1/DA/1234:1238		Kink-turn
homologous
IL_7RQB_047
NA
IL_4V8N_2991/DA/1219:1221,
1/DA/1229:1230		Single bulged A
homologous
IL_7RQB_048
NA
IL_4V8N_3001/DA/1262:1269,
1/DA/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA
IL_4V8N_3011/DA/1310:1313,
1/DA/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_4V8N_3021/DA/1319:1323,
1/DA/1331:1333		C-loop
homologous
IL_7RQB_051
NA
IL_4V8N_3031/DA/1351:1355,
1/DA/1376:1380		UAA/GAN
homologous
IL_7RQB_052
NA
IL_4V8N_3041/DA/1357:1361,
1/DA/1370:1374		tSH-tHW-tHS
homologous
IL_4WF9_052
IL_17136.7
IL_4V8N_3061/DA/1415:1416,
1/DA/1582:1587		No text annotation
geometric
IL_7RQB_054
NA
IL_4V8N_3071/DA/1417:1421,
1/DA/1577:1581		UAA/GAN
homologous
IL_7RQB_055
NA
IL_4V8N_3081/DA/1433:1435,
1/DA/1557:1560		Isolated tWW turn
homologous
IL_7RQB_056
NA
IL_4V8N_3091/DA/1437:1440,
1/DA/1551:1555		tSH-tHW
homologous
IL_7RQB_057
NA
IL_4V8N_3101/DA/1448:1450,
1/DA/1462:1463		Single stack bend
homologous
IL_7RQB_058
NA
IL_4V8N_3111/DA/1469:1473,
1/DA/1518:1523		UAA/GAN
homologous
IL_7RQB_060
NA
IL_4V8N_3121/DA/1481:1482,
1/DA/1506:1510		No text annotation
geometric
IL_7RQB_061
NA
IL_4V8N_3131/DA/1482:1486,
1/DA/1503:1506		Tandem non-canonical cWW pairs
geometric
IL_5EW4_002
IL_85033.2
IL_4V8N_3141/DA/1489:1491,
1/DA/1499:1500		Single bulged A
homologous
IL_7RQB_062
NA
IL_4V8N_3151/DA/1526:1529,
1/DA/1540:1546		No text annotation
IL_4V8N_4111/DA/1526:1531,
1/DA/1538:1546		No text annotation
IL_4V8N_3161/DA/1651:1656,
1/DA/2004:2006		No text annotation
homologous
IL_7RQB_064
NA
IL_4V8N_3171/DA/1663:1665,
1/DA/1995:1997		Isolated tWW turn
homologous
IL_5J7L_305
IL_67095.2
IL_4V8N_3181/DA/1666:1669,
1/DA/1993:1994		Major groove platform; stack outside cWW
homologous
IL_7RQB_066
NA
IL_4V8N_4121/DA/1666:1674,
1/DA/1990:1994		No text annotation
homologous
IL_9DFE_066
IL_22854.4
IL_4V8N_3191/DA/1669:1674,
1/DA/1990:1993		Intercalated tWH
geometric
IL_7RQB_067
NA
IL_4V8N_3201/DA/1686:1691,
1/DA/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_5J7L_308
IL_47346.2
IL_4V8N_3211/DA/1770:1771,
1/DA/1980:1982		Single bulged A
homologous
IL_7RQB_069
NA
IL_4V8N_3221/DA/1798:1804,
1/DA/1813:1821		Kink-turn related
homologous
IL_7RQB_070
NA
IL_4V8N_3231/DA/1837:1840,
1/DA/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_4V8N_3241/DA/1841:1842,
1/DA/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.4
IL_4V8N_3251/DA/1846:1849,
1/DA/1893:1894		Minor groove platform
homologous
IL_7RQB_073
NA
IL_4V8N_3261/DA/1851:1855,
1/DA/1887:1891		UAA/GAN with extra pair
homologous
IL_7RQB_074
NA
IL_4V8N_3271/DA/1856:1860,
1/DA/1882:1886		Triple sheared
homologous
IL_7RQB_075
NA
IL_4V8N_3281/DA/1933:1934,
1/DA/1964:1967		Bulged stacked bases
homologous
IL_7RQB_076
NA
IL_4V8N_3291/DA/1934:1945,
1/DA/1961:1964		No text annotation
geometric
IL_4WF9_077
IL_42218.2
IL_4V8N_3301/DA/2050:2052,
1/DA/2617:2618		Major groove platform
homologous
IL_7RQB_078
NA
IL_4V8N_3311/DA/2054:2057,
1/DA/2611:2615		No text annotation
homologous
IL_7RQB_079
NA
IL_4V8N_3321/DA/2067:2069,
1/DA/2442:2443		Single bulged U
homologous
IL_7RQB_080
NA
IL_4V8N_3331/DA/2070:2071,
1/DA/2438:2441		Minor groove platform
homologous
IL_7RQB_081
NA
IL_4V8N_3341/DA/2081:2083,
1/DA/2236:2239		Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_4V8N_3351/DA/2085:2087,
1/DA/2232:2234		No text annotation
homologous
IL_7RQB_083
NA
IL_4V8N_3391/DA/2108:2122,
1/DA/2176:2181		No text annotation
IL_4V8N_4131/DA/2108:2127,
1/DA/2161:2181		No text annotation
IL_4V8N_3401/DA/2124:2127,
1/DA/2161:2174		No text annotation
homologous
IL_3U4M_003
IL_75283.2
IL_4V8N_3441/DA/2297:2299,
1/DA/2317:2321		Isolated tHS basepair with bulges
geometric
IL_7RQB_088
NA
IL_4V8N_3451/DA/2350:2353,
1/DA/2364:2367		Double sheared
homologous
IL_7RQB_089
NA
IL_4V8N_3461/DA/2401:2403,
1/DA/2414:2415		Single bulged U
homologous
IL_5J7L_334
IL_89505.4
IL_4V8N_3471/DA/2453:2454,
1/DA/2498:2500		Single stack bend
homologous
IL_7RQB_091
NA
IL_4V8N_3481/DA/2454:2455,
1/DA/2496:2498		Major groove platform
geometric
IL_7RQB_092
NA
IL_4V8N_3491/DA/2457:2459,
1/DA/2493:2494		Major groove platform
geometric
IL_4WF9_091
IL_48076.6
IL_4V8N_3501/DA/2459:2461,
1/DA/2489:2493		Major groove minor groove platform with extra cWW
homologous
IL_7RQB_094
NA
IL_4V8N_3511/DA/2466:2470,
1/DA/2480:2484		Triple sheared
homologous
IL_5J7L_338
IL_17948.2
IL_4V8N_3521/DA/2507:2508,
1/DA/2580:2582		Major groove platform
homologous
IL_7RQB_096
NA
IL_4V8N_3531/DA/2510:2512,
1/DA/2574:2578		Isolated non-canonical cWW with bulges
geometric
IL_7RQB_097
NA
IL_4V8N_3541/DA/2512:2513,
1/DA/2571:2574		Multiple bulged bases
homologous
IL_7RQB_098
NA
IL_4V8N_3551/DA/2522:2523,
1/DA/2540:2543		Major groove platform with intercalation
homologous
IL_7RQB_099
NA
IL_4V8N_3571/DA/2591:2592,
1/DA/2601:2603		Single bulged A
homologous
IL_7RQB_101
NA
IL_4V8N_3581/DA/2636:2640,
1/DA/2774:2782		tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_4V8N_3591/DA/2652:2658,
1/DA/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7RQB_103
NA
IL_4V8N_3601/DA/2680:2684,
1/DA/2725:2727		C-loop
homologous
IL_7RQB_104
NA
IL_4V8N_3611/DA/2687:2691,
1/DA/2718:2722		No text annotation
homologous
IL_7RQB_105
NA
IL_4V8N_3621/DA/2695:2696,
1/DA/2711:2714		Multiple bulged bases
homologous
IL_7RQB_106
NA
IL_4V8N_3631/DA/2737:2742,
1/DA/2762:2767		UAA/GAN with extra cWW
homologous
IL_7RQB_107
NA
IL_4V8N_3641/DA/2838:2839,
1/DA/2878:2880		Single bulged C
homologous
IL_7RQB_108
NA
IL_4V8N_3651/DA/2843:2846,
1/DA/2870:2874		No text annotation
homologous
IL_7RQB_109
NA
IL_4V8N_3661/DA/2847:2852,
1/DA/2865:2869		tHS double platform
homologous
IL_7RQB_110
NA
IL_4V8N_3671/DB/17:18,
1/DB/65:67		Major groove intercalation
homologous
IL_4V9F_101
IL_31462.5
IL_4V8N_3691/DB/23:28,
1/DB/56:60		No text annotation
geometric
IL_5J7L_356
IL_18472.4
IL_4V8N_3701/DB/30:31,
1/DB/51:54		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_4V8N_3711/DB/34:38,
1/DB/44:48		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_4V8N_3721/DB/71:79,
1/DB/98:106		Bacterial 5S Loop E
homologous
IL_7RQB_115
NA

Problematic loops

#loop idProblemSequence
IL_4V8N_374No text annotation
IL_4V8N_006Isolated non-canonical cWW pair
IL_4V8N_375Partly complementary
IL_4V8N_007Isolated non-canonical cWW pair
IL_4V8N_010tWH-tWH-tHW-tHW
IL_4V8N_011Isolated non-canonical cWW pair
IL_4V8N_017No text annotation
IL_4V8N_376Single bulged G, near cWW
IL_4V8N_378No text annotation
IL_4V8N_027Isolated non-canonical cWW pair
IL_4V8N_379No text annotation
IL_4V8N_035Isolated non-canonical cWW pair
IL_4V8N_380Isolated non-canonical cWW pair
IL_4V8N_041Isolated non-canonical cWW pair
IL_4V8N_043No text annotation
IL_4V8N_381No text annotation
IL_4V8N_044Isolated cWS basepair
IL_4V8N_050No text annotation
IL_4V8N_383No text annotation
IL_4V8N_384No text annotation
IL_4V8N_055No text annotation
IL_4V8N_386No text annotation
IL_4V8N_063Tandem non-canonical cWW pairs
IL_4V8N_065No text annotation
IL_4V8N_066No text annotation
IL_4V8N_067Self complementary
IL_4V8N_068Isolated non-canonical cWW pair
IL_4V8N_387Isolated non-canonical cWW pair
IL_4V8N_078No text annotation
IL_4V8N_098Isolated cWS basepair
IL_4V8N_388Double sheared; A in syn; two near cWW pairs
IL_4V8N_389Partly complementary
IL_4V8N_101No text annotation
IL_4V8N_110No text annotation
IL_4V8N_150Isolated cWH basepair
IL_4V8N_151Isolated non-canonical cWW pair
IL_4V8N_152No text annotation
IL_4V8N_155No text annotation
IL_4V8N_423No text annotation
IL_4V8N_393No text annotation
IL_4V8N_156No text annotation
IL_4V8N_157Isolated non-canonical cWW pair
IL_4V8N_170Isolated non-canonical cWW pair
IL_4V8N_424Isolated cWH basepair
IL_4V8N_182Tandem non-canonical cWW pairs
IL_4V8N_187Isolated non-canonical cWW pair
IL_4V8N_394No text annotation
IL_4V8N_395Partly complementary
IL_4V8N_194Isolated non-canonical cWW pair
IL_4V8N_197tWH-tWH-tHW-tHW
IL_4V8N_198Isolated non-canonical cWW pair
IL_4V8N_204No text annotation
IL_4V8N_396Single bulged G, near cWW
IL_4V8N_398No text annotation
IL_4V8N_214Isolated non-canonical cWW pair
IL_4V8N_399No text annotation
IL_4V8N_222Isolated non-canonical cWW pair
IL_4V8N_400Isolated non-canonical cWW pair
IL_4V8N_228Isolated non-canonical cWW pair
IL_4V8N_230No text annotation
IL_4V8N_401No text annotation
IL_4V8N_231Isolated cWS basepair
IL_4V8N_237Isolated non-canonical cWW pair
IL_4V8N_404No text annotation
IL_4V8N_405No text annotation
IL_4V8N_242No text annotation
IL_4V8N_407No text annotation
IL_4V8N_251No text annotation
IL_4V8N_252Self complementary
IL_4V8N_253Isolated non-canonical cWW pair
IL_4V8N_408Isolated non-canonical cWW pair
IL_4V8N_263No text annotation
IL_4V8N_283Isolated cWS basepair
IL_4V8N_409Double sheared; A in syn; two near cWW pairs
IL_4V8N_410Partly complementary
IL_4V8N_285Single bulged A
IL_4V8N_431Tandem non-canonical cWW pairs
IL_4V8N_286No text annotation
IL_4V8N_295No text annotation
IL_4V8N_305Isolated non-canonical cWW pair
IL_4V8N_336Isolated cWH basepair
IL_4V8N_337Isolated non-canonical cWW pair
IL_4V8N_338No text annotation
IL_4V8N_341No text annotation
IL_4V8N_414Kink-turn
IL_4V8N_342Kink-turn
IL_4V8N_343Isolated non-canonical cWW pair
IL_4V8N_356Isolated non-canonical cWW pair
IL_4V8N_432Isolated cWH basepair
IL_4V8N_368Tandem non-canonical cWW pairs
IL_4V8N_373Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V8N_0331/AA/46:47,
1/AA/361:367,
1/AA/393:395		No text annotation
geometric
J3_4LFB_010
J3_67856.4
J3_4V8N_0341/AA/46:52,
1/AA/359:367,
1/AA/393:395		No text annotation
homologous
J3_4LFB_014
J3_46317.4
J3_4V8N_0791/AA/142:144,
1/AA/178:183,
1/AA/194:221		No text annotation
J3_4V8N_0361/AA/586:588,
1/AA/651:654,
1/AA/754:755		No text annotation
geometric
J3_4LFB_011
J3_56052.5
J3_4V8N_0371/AA/586:588,
1/AA/651:655,
1/AA/751:755		No text annotation
homologous
J3_4LFB_015
J3_17385.4
J3_4V8N_0381/AA/672:677,
1/AA/713:725,
1/AA/732:734		No text annotation
J3_4V8N_0011/AA/826:829,
1/AA/857:861,
1/AA/868:874		No text annotation
homologous
J3_4LFB_001
J3_85054.4
J3_4V8N_0021/AA/936:939,
1/AA/1344:1350,
1/AA/1372:1379		No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_4V8N_0401/AA/941:946,
1/AA/1235:1237,
1/AA/1337:1342		No text annotation
J3_4V8N_0031/AA/943:946,
1/AA/1235:1237,
1/AA/1337:1340		No text annotation
geometric
J3_4LFB_003
J3_52655.4
J3_4V8N_0041/AA/955:962,
1/AA/973:984,
1/AA/1221:1225		No text annotation
homologous
J3_4LFB_004
J3_83516.4
J3_4V8N_0051/AA/990:993,
1/AA/1045:1047,
1/AA/1210:1215		No text annotation
homologous
J3_4LFB_005
J3_82572.1
J3_4V8N_0411/AA/990:1000,
1/AA/1041:1047,
1/AA/1210:1215		No text annotation
J3_4V8N_0801/AA/1060:1068,
1/AA/1107:1113,
1/AA/1187:1197		No text annotation
J3_4V8N_0061/AA/1063:1068,
1/AA/1107:1113,
1/AA/1187:1193		No text annotation
geometric
J3_4LFB_007
J3_08394.3
J3_4V8N_0811/AA/1073:1074,
1/AA/1083:1086,
1/AA/1099:1102		No text annotation
homologous
J3_6CZR_079
NA
J3_4V8N_0821/AA/1116:1118,
1/AA/1155:1161,
1/AA/1175:1184		No text annotation
homologous
J3_4LFB_018
J3_17791.2
J3_4V8N_0081/AA/1237:1241,
1/AA/1296:1303,
1/AA/1334:1337		No text annotation
homologous
J3_4LFB_009
J3_37047.6
J3_4V8N_0831/AW/3:29,
1/AW/45:51,
1/AW/67:73		No text annotation
J3_4V8N_0451/AY/7:28,
1/AY/46:52,
1/AY/66:68		No text annotation
J3_4V8N_0461/BA/30:31,
1/BA/474:481,
1/BA/509:510		No text annotation
geometric
J3_8VTW_036
NA
J3_4V8N_0471/BA/30:31,
1/BA/474:484,
1/BA/496:510		No text annotation
homologous
J3_4WF9_011
J3_92134.2
J3_4V8N_0481/BA/32:35,
1/BA/445:461,
1/BA/468:473		No text annotation
homologous
J3_9DFE_003
J3_30040.2
J3_4V8N_0491/BA/56:57,
1/BA/70:76,
1/BA/110:114		No text annotation
homologous
J3_9DFE_004
J3_35667.2
J3_4V8N_0501/BA/297:301,
1/BA/316:325,
1/BA/337:341		No text annotation
homologous
J3_9DFE_006
J3_46299.2
J3_4V8N_0091/BA/683:689,
1/BA/773:775,
1/BA/791:794		No text annotation
homologous
J3_7A0S_004
J3_64189.2
J3_4V8N_0101/BA/698:700,
1/BA/732:736,
1/BA/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_4V8N_0111/BA/1298:1303,
1/BA/1625:1627,
1/BA/1639:1642		No text annotation
homologous
J3_7RQB_007
NA
J3_4V8N_0121/BA/1306:1309,
1/BA/1605:1611,
1/BA/1620:1622		No text annotation
homologous
J3_7RQB_008
NA
J3_4V8N_0511/BA/1344:1350,
1/BA/1381:1385,
1/BA/1402:1403		No text annotation
homologous
J3_9DFE_012
J3_31965.2
J3_4V8N_0521/BA/1424:1429,
1/BA/1564:1565,
1/BA/1568:1574		No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_4V8N_0131/BA/2091:2093,
1/BA/2196:2200,
1/BA/2223:2228		No text annotation
homologous
J3_7RQB_010
NA
J3_4V8N_0531/BA/2282:2284,
1/BA/2384:2395,
1/BA/2421:2427		No text annotation
homologous
J3_7A0S_020
J3_20992.1
J3_4V8N_0141/BA/2295:2297,
1/BA/2321:2323,
1/BA/2332:2337		No text annotation
homologous
J3_7RQB_011
NA
J3_4V8N_0151/BA/2517:2520,
1/BA/2545:2547,
1/BA/2561:2567		No text annotation
homologous
J3_7A0S_011
J3_32601.5
J3_4V8N_0541/BA/2814:2815,
1/BA/2831:2836,
1/BA/2882:2886		No text annotation
homologous
J3_9DFE_019
J3_76911.2
J3_4V8N_0161/BB/11:17,
1/BB/67:69,
1/BB/108:110		No text annotation
J3_4V8N_0551/BB/11:18,
1/BB/65:69,
1/BB/108:110		No text annotation
J3_4V8N_0561/CA/46:47,
1/CA/361:367,
1/CA/393:395		No text annotation
geometric
J3_4LFB_010
J3_67856.4
J3_4V8N_0571/CA/46:52,
1/CA/359:367,
1/CA/393:395		No text annotation
homologous
J3_4LFB_014
J3_46317.4
J3_4V8N_0841/CA/142:144,
1/CA/178:183,
1/CA/194:221		No text annotation
J3_4V8N_0591/CA/586:588,
1/CA/651:654,
1/CA/754:755		No text annotation
geometric
J3_4LFB_011
J3_56052.5
J3_4V8N_0601/CA/586:588,
1/CA/651:655,
1/CA/751:755		No text annotation
homologous
J3_4LFB_015
J3_17385.4
J3_4V8N_0611/CA/672:677,
1/CA/713:725,
1/CA/732:734		No text annotation
J3_4V8N_0171/CA/826:829,
1/CA/857:861,
1/CA/868:874		No text annotation
homologous
J3_4LFB_001
J3_85054.4
J3_4V8N_0181/CA/936:939,
1/CA/1344:1350,
1/CA/1372:1379		No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_4V8N_0191/CA/943:946,
1/CA/1235:1237,
1/CA/1337:1340		No text annotation
homologous
J3_4LFB_003
J3_52655.4
J3_4V8N_0201/CA/955:962,
1/CA/973:984,
1/CA/1221:1225		No text annotation
geometric
J3_4LFB_004
J3_83516.4
J3_4V8N_0211/CA/990:993,
1/CA/1045:1047,
1/CA/1210:1215		No text annotation
homologous
J3_4LFB_005
J3_82572.1
J3_4V8N_0651/CA/990:1000,
1/CA/1041:1047,
1/CA/1210:1215		No text annotation
J3_4V8N_0221/CA/1063:1068,
1/CA/1107:1113,
1/CA/1187:1193		No text annotation
homologous
J3_4LFB_007
J3_08394.3
J3_4V8N_0851/CA/1073:1074,
1/CA/1083:1086,
1/CA/1099:1102		No text annotation
homologous
J3_6CZR_079
NA
J3_4V8N_0861/CA/1116:1118,
1/CA/1155:1161,
1/CA/1175:1184		No text annotation
homologous
J3_4LFB_018
J3_17791.2
J3_4V8N_0241/CA/1237:1241,
1/CA/1296:1303,
1/CA/1334:1337		No text annotation
homologous
J3_4LFB_009
J3_37047.6
J3_4V8N_0681/CY/7:28,
1/CY/46:52,
1/CY/66:68		No text annotation
J3_4V8N_0691/DA/30:31,
1/DA/474:481,
1/DA/509:510		No text annotation
geometric
J3_8VTW_036
NA
J3_4V8N_0701/DA/30:31,
1/DA/474:484,
1/DA/496:510		No text annotation
homologous
J3_4WF9_011
J3_92134.2
J3_4V8N_0711/DA/32:35,
1/DA/445:461,
1/DA/468:473		No text annotation
homologous
J3_9DFE_003
J3_30040.2
J3_4V8N_0721/DA/56:57,
1/DA/70:76,
1/DA/110:114		No text annotation
homologous
J3_9DFE_004
J3_35667.2
J3_4V8N_0731/DA/297:301,
1/DA/316:325,
1/DA/337:341		No text annotation
homologous
J3_9DFE_006
J3_46299.2
J3_4V8N_0251/DA/683:689,
1/DA/773:775,
1/DA/791:794		No text annotation
homologous
J3_7A0S_004
J3_64189.2
J3_4V8N_0261/DA/698:700,
1/DA/732:736,
1/DA/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_4V8N_0271/DA/1298:1303,
1/DA/1625:1627,
1/DA/1639:1642		No text annotation
homologous
J3_7RQB_007
NA
J3_4V8N_0281/DA/1306:1309,
1/DA/1605:1611,
1/DA/1620:1622		No text annotation
homologous
J3_7RQB_008
NA
J3_4V8N_0741/DA/1344:1350,
1/DA/1381:1385,
1/DA/1402:1403		No text annotation
homologous
J3_9DFE_012
J3_31965.2
J3_4V8N_0751/DA/1424:1429,
1/DA/1564:1565,
1/DA/1568:1574		No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_4V8N_0291/DA/2091:2093,
1/DA/2196:2200,
1/DA/2223:2228		No text annotation
homologous
J3_7RQB_010
NA
J3_4V8N_0761/DA/2282:2284,
1/DA/2384:2395,
1/DA/2421:2427		No text annotation
homologous
J3_7A0S_020
J3_20992.1
J3_4V8N_0301/DA/2295:2297,
1/DA/2321:2323,
1/DA/2332:2337		No text annotation
homologous
J3_7RQB_011
NA
J3_4V8N_0311/DA/2517:2520,
1/DA/2545:2547,
1/DA/2561:2567		No text annotation
homologous
J3_7A0S_011
J3_32601.5
J3_4V8N_0771/DA/2814:2815,
1/DA/2831:2836,
1/DA/2882:2886		No text annotation
homologous
J3_9DFE_019
J3_76911.2
J3_4V8N_0321/DB/11:17,
1/DB/67:69,
1/DB/108:110		No text annotation
J3_4V8N_0781/DB/11:18,
1/DB/65:69,
1/DB/108:110		No text annotation
J4_4V8N_0011/AA/115:122,
1/AA/239:240,
1/AA/286:289,
1/AA/311:312		No text annotation
homologous
J4_4LFB_001
J4_35578.3
J4_4V8N_0021/AA/575:577,
1/AA/764:769,
1/AA/810:821,
1/AA/879:880		No text annotation
homologous
J4_4LFB_003
J4_61885.6
J4_4V8N_0311/AV/7:12,
1/AV/25:28,
1/AV/46:51,
1/AV/67:68		No text annotation
homologous
J4_4V8N_033
J4_59634.1
J4_4V8N_0321/AY/7:12,
1/AY/25:28,
1/AY/46:52,
1/AY/66:68		No text annotation
J4_4V8N_0051/BA/268:269,
1/BA/370:375,
1/BA/399:406,
1/BA/421:424		No text annotation
homologous
J4_9DFE_001
J4_45801.6
J4_4V8N_0061/BA/297:301,
1/BA/316:319,
1/BA/323:325,
1/BA/337:341		No text annotation
homologous
J4_9DFE_002
J4_71729.5
J4_4V8N_0071/BA/601:604,
1/BA/624:628,
1/BA/635:638,
1/BA/650:656		No text annotation
J4_4V8N_0081/BA/1270:1276,
1/BA/1294:1295,
1/BA/1645:1648,
1/BA/2009:2010		No text annotation
homologous
J4_9DFE_003
J4_64571.5
J4_4V8N_0091/BA/1310:1314,
1/BA/1338:1343,
1/BA/1404:1405,
1/BA/1597:1604		No text annotation
homologous
J4_9DFE_004
J4_69051.6
J4_4V8N_0101/BA/1313:1314,
1/BA/1338:1343,
1/BA/1404:1405,
1/BA/1597:1603		No text annotation
homologous
J4_9DFE_005
J4_10313.5
J4_4V8N_0111/BA/1444:1445,
1/BA/1466:1467,
1/BA/1525:1526,
1/BA/1546:1547		No text annotation
homologous
J4_9DFE_006
J4_24280.2
J4_4V8N_0121/BA/1772:1776,
1/BA/1788:1792,
1/BA/1827:1830,
1/BA/1975:1979		No text annotation
homologous
J4_9DFE_007
J4_61477.5
J4_4V8N_0131/BA/1833:1835,
1/BA/1905:1906,
1/BA/1924:1933,
1/BA/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_4V8N_0141/BA/2285:2289,
1/BA/2343:2347,
1/BA/2370:2372,
1/BA/2381:2383		No text annotation
homologous
J4_4WF9_008
J4_04930.6
J4_4V8N_0151/BA/2643:2646,
1/BA/2674:2676,
1/BA/2731:2735,
1/BA/2769:2771		No text annotation
homologous
J4_9DFE_010
J4_77044.4
J4_4V8N_0161/CA/115:122,
1/CA/239:240,
1/CA/286:289,
1/CA/311:312		No text annotation
homologous
J4_4LFB_001
J4_35578.3
J4_4V8N_0171/CA/575:577,
1/CA/764:769,
1/CA/810:821,
1/CA/879:880		No text annotation
homologous
J4_4LFB_003
J4_61885.6
J4_4V8N_0331/CV/7:12,
1/CV/25:28,
1/CV/46:51,
1/CV/67:68		No text annotation
J4_59634.1
J4_4V8N_0341/CY/7:12,
1/CY/25:28,
1/CY/46:52,
1/CY/66:68		No text annotation
J4_4V8N_0201/DA/268:269,
1/DA/370:375,
1/DA/399:406,
1/DA/421:424		No text annotation
homologous
J4_9DFE_001
J4_45801.6
J4_4V8N_0211/DA/297:301,
1/DA/316:319,
1/DA/323:325,
1/DA/337:341		No text annotation
homologous
J4_9DFE_002
J4_71729.5
J4_4V8N_0221/DA/601:604,
1/DA/624:628,
1/DA/635:638,
1/DA/650:656		No text annotation
J4_4V8N_0231/DA/1270:1276,
1/DA/1294:1295,
1/DA/1645:1648,
1/DA/2009:2010		No text annotation
homologous
J4_9DFE_003
J4_64571.5
J4_4V8N_0241/DA/1310:1314,
1/DA/1338:1343,
1/DA/1404:1405,
1/DA/1597:1604		No text annotation
homologous
J4_9DFE_004
J4_69051.6
J4_4V8N_0251/DA/1313:1314,
1/DA/1338:1343,
1/DA/1404:1405,
1/DA/1597:1603		No text annotation
homologous
J4_9DFE_005
J4_10313.5
J4_4V8N_0261/DA/1444:1445,
1/DA/1466:1467,
1/DA/1525:1526,
1/DA/1546:1547		No text annotation
homologous
J4_9DFE_006
J4_24280.2
J4_4V8N_0271/DA/1772:1776,
1/DA/1788:1792,
1/DA/1827:1830,
1/DA/1975:1979		No text annotation
homologous
J4_9DFE_007
J4_61477.5
J4_4V8N_0281/DA/1833:1835,
1/DA/1905:1906,
1/DA/1924:1933,
1/DA/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_4V8N_0291/DA/2285:2289,
1/DA/2343:2347,
1/DA/2370:2372,
1/DA/2381:2383		No text annotation
homologous
J4_4WF9_008
J4_04930.6
J4_4V8N_0301/DA/2643:2646,
1/DA/2674:2676,
1/DA/2731:2735,
1/DA/2769:2771		No text annotation
homologous
J4_9DFE_010
J4_77044.4
J5_4V8N_0171/AA/36:39,
1/AA/403:406,
1/AA/436:442,
1/AA/492:500,
1/AA/545:548		No text annotation
homologous
J5_4LFB_001
J5_70703.1
J5_4V8N_0021/AA/58:61,
1/AA/106:113,
1/AA/314:316,
1/AA/337:339,
1/AA/350:354		No text annotation
homologous
J5_4LFB_002
J5_59910.6
J5_4V8N_0031/BA/47:54,
1/BA/116:121,
1/BA/130:131,
1/BA/148:150,
1/BA/176:178		No text annotation
homologous
J5_9DFE_001
J5_01737.2
J5_4V8N_0041/BA/531:533,
1/BA/560:564,
1/BA/577:579,
1/BA/1261:1262,
1/BA/2017:2018		No text annotation
homologous
J5_9DFE_003
J5_43153.5
J5_4V8N_0051/BA/584:589,
1/BA/668:671,
1/BA/809:812,
1/BA/1195:1196,
1/BA/1250:1256		No text annotation
homologous
J5_9DFE_004
J5_74302.5
J5_4V8N_0061/BA/1674:1682,
1/BA/1706:1707,
1/BA/1751:1752,
1/BA/1756:1764,
1/BA/1988:1990		No text annotation
homologous
J5_9DFE_005
J5_62523.6
J5_4V8N_0071/BA/2057:2064,
1/BA/2446:2453,
1/BA/2500:2507,
1/BA/2582:2588,
1/BA/2606:2611		No text annotation
J5_4V8N_0081/BA/2074:2077,
1/BA/2243:2246,
1/BA/2258:2259,
1/BA/2281:2282,
1/BA/2427:2435		No text annotation
homologous
J5_9DFE_007
J5_39529.1
J5_4V8N_0181/CA/36:39,
1/CA/403:406,
1/CA/436:442,
1/CA/492:500,
1/CA/545:548		No text annotation
homologous
J5_4LFB_001
J5_70703.1
J5_4V8N_0101/CA/58:61,
1/CA/106:113,
1/CA/314:316,
1/CA/337:339,
1/CA/350:354		No text annotation
homologous
J5_4LFB_002
J5_59910.6
J5_4V8N_0111/DA/47:54,
1/DA/116:121,
1/DA/130:131,
1/DA/148:150,
1/DA/176:178		No text annotation
homologous
J5_9DFE_001
J5_01737.2
J5_4V8N_0121/DA/531:533,
1/DA/560:564,
1/DA/577:579,
1/DA/1261:1262,
1/DA/2017:2018		No text annotation
homologous
J5_9DFE_003
J5_43153.5
J5_4V8N_0131/DA/584:589,
1/DA/668:671,
1/DA/809:812,
1/DA/1195:1196,
1/DA/1250:1256		No text annotation
homologous
J5_9DFE_004
J5_74302.5
J5_4V8N_0141/DA/1674:1682,
1/DA/1706:1707,
1/DA/1751:1752,
1/DA/1756:1764,
1/DA/1988:1990		No text annotation
homologous
J5_9DFE_005
J5_62523.6
J5_4V8N_0151/DA/2057:2064,
1/DA/2446:2453,
1/DA/2500:2507,
1/DA/2582:2588,
1/DA/2606:2611		No text annotation
J5_4V8N_0161/DA/2074:2077,
1/DA/2243:2246,
1/DA/2258:2259,
1/DA/2281:2282,
1/DA/2427:2435		No text annotation
homologous
J5_9DFE_007
J5_39529.1
J6_4V8N_0011/BA/44:45,
1/BA/179:183,
1/BA/214:224,
1/BA/231:235,
1/BA/262:266,
1/BA/426:433		No text annotation
J6_4V8N_0021/BA/2074:2077,
1/BA/2243:2246,
1/BA/2258:2259,
1/BA/2281:2284,
1/BA/2384:2395,
1/BA/2421:2435		No text annotation
J6_4V8N_0031/DA/44:45,
1/DA/179:183,
1/DA/214:224,
1/DA/231:235,
1/DA/262:266,
1/DA/426:433		No text annotation
J6_4V8N_0041/DA/2074:2077,
1/DA/2243:2246,
1/DA/2258:2259,
1/DA/2281:2284,
1/DA/2384:2395,
1/DA/2421:2435		No text annotation
J7_4V8N_0011/BA/817:822,
1/BA/835:836,
1/BA/943:946,
1/BA/971:976,
1/BA/987:991,
1/BA/1163:1164,
1/BA/1185:1190		No text annotation
J7_4V8N_0021/DA/817:822,
1/DA/835:836,
1/DA/943:946,
1/DA/971:976,
1/DA/987:991,
1/DA/1163:1164,
1/DA/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_4V8N_035No text annotation
J3_4V8N_039No text annotation
J3_4V8N_042No text annotation
J3_4V8N_043No text annotation
J3_4V8N_007No text annotation
J3_4V8N_044No text annotation
J3_4V8N_058No text annotation
J3_4V8N_062No text annotation
J3_4V8N_063No text annotation
J3_4V8N_064No text annotation
J3_4V8N_066No text annotation
J3_4V8N_023No text annotation
J3_4V8N_087No text annotation
J3_4V8N_067No text annotation
J4_4V8N_003No text annotation
J4_4V8N_004No text annotation
J4_4V8N_018No text annotation
J4_4V8N_019No text annotation
J5_4V8N_001No text annotation
J5_4V8N_009No text annotation

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