7Q08 | Motifs

113 Hairpin loops
234 Internal loops
32 Junction loops

Valid loops

#	loop id	location	annotation	motif
1	HL_7Q08_001 ➜	1/1/37:44	NA	NA
2	HL_7Q08_002 ➜	1/1/68:73	NA	NA
3	HL_7Q08_003 ➜	1/1/89:95	NA	NA
4	HL_7Q08_004 ➜	1/1/131:135	NA	NA
5	HL_7Q08_005 ➜	1/1/193:200	NA	NA
6	HL_7Q08_006 ➜	1/1/207:211	NA	NA
7	HL_7Q08_007 ➜	1/1/215:223	NA	NA
8	HL_7Q08_008 ➜	1/1/278:287	NA	NA
9	HL_7Q08_009 ➜	1/1/303:312	NA	NA
10	HL_7Q08_010 ➜	1/1/357:362	NA	NA
11	HL_7Q08_011 ➜	1/1/382:387	NA	NA
12	HL_7Q08_013 ➜	1/1/539:546	NA	NA
13	HL_7Q08_014 ➜	1/1/597:602	NA	NA
14	HL_7Q08_015 ➜	1/1/638:647	NA	NA
15	HL_7Q08_016 ➜	1/1/684:692	NA	NA
16	HL_7Q08_017 ➜	1/1/705:710	NA	NA
17	HL_7Q08_018 ➜	1/1/729:734	NA	NA
18	HL_7Q08_019 ➜	1/1/759:764	NA	NA
19	HL_7Q08_020 ➜	1/1/840:845	NA	NA
20	HL_7Q08_021 ➜	1/1/872:881	NA	NA
21	HL_7Q08_022 ➜	1/1/906:914	NA	NA
22	HL_7Q08_023 ➜	1/1/954:959	NA	NA
23	HL_7Q08_024 ➜	1/1/1019:1025	NA	NA
24	HL_7Q08_025 ➜	1/1/1072:1079	NA	NA
25	HL_7Q08_026 ➜	1/1/1122:1128	NA	NA
26	HL_7Q08_027 ➜	1/1/1144:1151	NA	NA
27	HL_7Q08_028 ➜	1/1/1235:1245	NA	NA
28	HL_7Q08_029 ➜	1/1/1262:1271	NA	NA
29	HL_7Q08_030 ➜	1/1/1343:1353	NA	NA
30	HL_7Q08_031 ➜	1/1/1399:1404	NA	NA
31	HL_7Q08_032 ➜	1/1/1458:1466	NA	NA
32	HL_7Q08_033 ➜	1/1/1502:1508	NA	NA
33	HL_7Q08_034 ➜	1/1/1540:1545	NA	NA
34	HL_7Q08_035 ➜	1/1/1562:1569	NA	NA
35	HL_7Q08_036 ➜	1/1/1595:1604	NA	NA
36	HL_7Q08_037 ➜	1/1/1630:1635	NA	NA
37	HL_7Q08_038 ➜	1/1/1676:1684	NA	NA
38	HL_7Q08_039 ➜	1/1/1715:1721	NA	NA
39	HL_7Q08_040 ➜	1/1/1756:1761	NA	NA
40	HL_7Q08_041 ➜	1/1/1788:1792	NA	NA
41	HL_7Q08_042 ➜	1/1/1840:1847	NA	NA
42	HL_7Q08_043 ➜	1/1/1858:1864	NA	NA
43	HL_7Q08_044 ➜	1/1/1919:1924	NA	NA
44	HL_7Q08_046 ➜	1/1/2088:2092	NA	NA
45	HL_7Q08_047 ➜	1/1/2113:2123	NA	NA
46	HL_7Q08_048 ➜	1/1/2142:2148	NA	NA
47	HL_7Q08_049 ➜	1/1/2198:2203	NA	NA
48	HL_7Q08_050 ➜	1/1/2231:2241	NA	NA
49	HL_7Q08_051 ➜	1/1/2270:2278	NA	NA
50	HL_7Q08_052 ➜	1/1/2347:2356	NA	NA
51	HL_7Q08_054 ➜	1/1/2514:2521	NA	NA
52	HL_7Q08_055 ➜	1/1/2543:2547	NA	NA
53	HL_7Q08_056 ➜	1/1/2588:2596	NA	NA
54	HL_7Q08_057 ➜	1/1/2605:2617	NA	NA
55	HL_7Q08_058 ➜	1/1/2645:2653	NA	NA
56	HL_7Q08_059 ➜	1/1/2665:2672	NA	NA
57	HL_7Q08_060 ➜	1/1/2696:2704	NA	NA
58	HL_7Q08_061 ➜	1/1/2716:2721	NA	NA
59	HL_7Q08_062 ➜	1/1/2748:2756	NA	NA
60	HL_7Q08_063 ➜	1/1/2812:2820	NA	NA
61	HL_7Q08_064 ➜	1/1/2869:2876	NA	NA
62	HL_7Q08_065 ➜	1/1/2892:2898	NA	NA
63	HL_7Q08_066 ➜	1/1/2935:2940	NA	NA
64	HL_7Q08_067 ➜	1/1/2997:3002	NA	NA
65	HL_7Q08_068 ➜	1/1/3040:3045	NA	NA
66	HL_7Q08_069 ➜	1/1/3082:3096	NA	NA
67	HL_7Q08_070 ➜	1/1/3161:3166	NA	NA
68	HL_7Q08_071 ➜	1/1/3205:3212	NA	NA
69	HL_7Q08_072 ➜	1/1/3268:3276	NA	NA
70	HL_7Q08_073 ➜	1/1/3315:3318	NA	NA
71	HL_7Q08_074 ➜	1/3/36:41	NA	NA
72	HL_7Q08_075 ➜	1/3/88:93	NA	NA
73	HL_7Q08_076 ➜	1/4/69:89	NA	NA
74	HL_7Q08_077 ➜	1/4/108:114	NA	NA
75	HL_7Q08_078 ➜	1/4/124:129	NA	NA
76	HL_7Q08_079 ➜	1/A/7:17	NA	NA
77	HL_7Q08_080 ➜	1/A/70:81	NA	NA
78	HL_7Q08_081 ➜	1/A/152:158	NA	NA
79	HL_7Q08_082 ➜	1/A/188:193	NA	NA
80	HL_7Q08_083 ➜	1/A/241:248	NA	NA
81	HL_7Q08_084 ➜	1/A/274:277	NA	NA
82	HL_7Q08_085 ➜	1/A/328:336	NA	NA
83	HL_7Q08_086 ➜	1/A/366:371	NA	NA
84	HL_7Q08_087 ➜	1/A/391:402	NA	NA
85	HL_7Q08_088 ➜	1/A/412:417	NA	NA
86	HL_7Q08_089 ➜	1/A/448:454	NA	NA
87	HL_7Q08_090 ➜	1/A/518:530	NA	NA
88	HL_7Q08_091 ➜	1/A/567:572	NA	NA
89	HL_7Q08_094 ➜	1/A/749:757	NA	NA
90	HL_7Q08_095 ➜	1/A/762:767	NA	NA
91	HL_7Q08_096 ➜	1/A/814:828	NA	NA
92	HL_7Q08_097 ➜	1/A/885:894	NA	NA
93	HL_7Q08_098 ➜	1/A/922:927	NA	NA
94	HL_7Q08_099 ➜	1/A/982:992	NA	NA
95	HL_7Q08_100 ➜	1/A/1040:1049	NA	NA
96	HL_7Q08_101 ➜	1/A/1069:1074	NA	NA
97	HL_7Q08_102 ➜	1/A/1106:1111	NA	NA
98	HL_7Q08_103 ➜	1/A/1173:1182	NA	NA
99	HL_7Q08_104 ➜	1/A/1223:1232	NA	NA
100	HL_7Q08_105 ➜	1/A/1281:1286	NA	NA
101	HL_7Q08_106 ➜	1/A/1294:1301	NA	NA
102	HL_7Q08_107 ➜	1/A/1344:1349	NA	NA
103	HL_7Q08_108 ➜	1/A/1382:1388	NA	NA
104	HL_7Q08_109 ➜	1/A/1488:1493	NA	NA
105	HL_7Q08_110 ➜	1/A/1537:1548	NA	NA
106	HL_7Q08_111 ➜	1/A/1581:1589	NA	NA
107	HL_7Q08_113 ➜	1/A/1765:1770	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_7Q08_012 ➜	missing nts	NA
2	HL_7Q08_045 ➜	missing nts	NA
3	HL_7Q08_053 ➜	missing nts	NA
4	HL_7Q08_092 ➜	missing nts	NA
5	HL_7Q08_093 ➜	missing nts	NA
6	HL_7Q08_112 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_7Q08_001 ➜	1/1/6:7,1/4/150:152	NA	NA
2	IL_7Q08_002 ➜	1/1/12:14,1/4/144:145	NA	NA
3	IL_7Q08_003 ➜	1/1/26:27,1/1/55:57	NA	NA
4	IL_7Q08_004 ➜	1/1/30:37,1/1/44:52	NA	NA
5	IL_7Q08_005 ➜	1/1/81:88,1/1/96:102	NA	NA
6	IL_7Q08_006 ➜	1/1/122:123,1/1/143:148	NA	NA
7	IL_7Q08_007 ➜	1/1/124:126,1/1/140:142	NA	NA
8	IL_7Q08_008 ➜	1/1/161:165,1/1/256:259	NA	NA
9	IL_7Q08_009 ➜	1/1/168:169,1/1/248:253	NA	NA
10	IL_7Q08_010 ➜	1/1/176:177,1/1/238:241	NA	NA
11	IL_7Q08_011 ➜	1/1/177:178,1/1/236:238	NA	NA
12	IL_7Q08_012 ➜	1/1/188:190,1/1/203:204	NA	NA
13	IL_7Q08_013 ➜	1/1/337:339,1/4/25:26	NA	NA
14	IL_7Q08_014 ➜	1/1/376:379,1/1/390:403	NA	NA
15	IL_7Q08_015 ➜	1/1/404:410,1/4/13:19	NA	NA
16	IL_7Q08_016 ➜	1/1/439:442,1/1/487:488	NA	NA
17	IL_7Q08_017 ➜	1/1/505:507,1/1/578:579	NA	NA
18	IL_7Q08_018 ➜	1/1/508:509,1/1/575:577	NA	NA
19	IL_7Q08_019 ➜	1/1/513:522,1/1/564:571	NA	NA
20	IL_7Q08_020 ➜	1/1/527:534,1/1/551:559	NA	NA
21	IL_7Q08_021 ➜	1/1/666:668,1/1/788:790	NA	NA
22	IL_7Q08_022 ➜	1/1/678:682,1/1/694:698	NA	NA
23	IL_7Q08_023 ➜	1/1/723:726,1/1/737:741	NA	NA
24	IL_7Q08_024 ➜	1/1/748:749,1/1/775:777	NA	NA
25	IL_7Q08_025 ➜	1/1/751:752,1/1/771:773	NA	NA
26	IL_7Q08_026 ➜	1/1/754:759,1/1/764:769	NA	NA
27	IL_7Q08_027 ➜	1/1/799:801,1/1/934:936	NA	NA
28	IL_7Q08_028 ➜	1/1/801:805,1/1/927:934	NA	NA
29	IL_7Q08_029 ➜	1/1/824:825,1/1/891:893	NA	NA
30	IL_7Q08_030 ➜	1/1/829:830,1/1/855:857	NA	NA
31	IL_7Q08_031 ➜	1/1/830:834,1/1/851:855	NA	NA
32	IL_7Q08_032 ➜	1/1/865:868,1/1/884:886	NA	NA
33	IL_7Q08_033 ➜	1/1/869:871,1/1/882:883	NA	NA
34	IL_7Q08_034 ➜	1/1/903:905,1/1/915:919	NA	NA
35	IL_7Q08_035 ➜	1/1/950:952,1/1/961:963	NA	NA
36	IL_7Q08_036 ➜	1/1/965:966,1/1/1107:1109	NA	NA
37	IL_7Q08_037 ➜	1/1/973:978,1/1/1097:1100	NA	NA
38	IL_7Q08_038 ➜	1/1/979:981,1/1/1095:1096	NA	NA
39	IL_7Q08_039 ➜	1/1/987:993,1/1/1048:1054	NA	NA
40	IL_7Q08_040 ➜	1/1/993:994,1/1/1046:1048	NA	NA
41	IL_7Q08_041 ➜	1/1/995:1000,1/1/1042:1045	NA	NA
42	IL_7Q08_042 ➜	1/1/1002:1005,1/1/1037:1040	NA	NA
43	IL_7Q08_043 ➜	1/1/1005:1007,1/1/1035:1037	NA	NA
44	IL_7Q08_044 ➜	1/1/1010:1014,1/1/1030:1032	NA	NA
45	IL_7Q08_045 ➜	1/1/1017:1019,1/1/1025:1027	NA	NA
46	IL_7Q08_046 ➜	1/1/1065:1067,1/1/1083:1085	NA	NA
47	IL_7Q08_047 ➜	1/1/1070:1072,1/1/1079:1080	NA	NA
48	IL_7Q08_048 ➜	1/1/1116:1118,1/1/1132:1134	NA	NA
49	IL_7Q08_049 ➜	1/1/1119:1121,1/1/1129:1131	NA	NA
50	IL_7Q08_050 ➜	1/1/1163:1167,1/1/1324:1328	NA	NA
51	IL_7Q08_051 ➜	1/1/1169:1176,1/1/1321:1322	NA	NA
52	IL_7Q08_052 ➜	1/1/1176:1178,1/1/1320:1321	NA	NA
53	IL_7Q08_053 ➜	1/1/1183:1190,1/1/1310:1315	NA	NA
54	IL_7Q08_054 ➜	1/1/1190:1201,1/1/1295:1310	NA	NA
55	IL_7Q08_055 ➜	1/1/1203:1205,1/1/1292:1293	NA	NA
56	IL_7Q08_056 ➜	1/1/1214:1222,1/1/1279:1283	NA	NA
57	IL_7Q08_057 ➜	1/1/1229:1234,1/1/1246:1251	NA	NA
58	IL_7Q08_058 ➜	1/1/1258:1262,1/1/1271:1273	NA	NA
59	IL_7Q08_059 ➜	1/1/1339:1342,1/1/1354:1357	NA	NA
60	IL_7Q08_060 ➜	1/1/1372:1374,1/1/1424:1427	NA	NA
61	IL_7Q08_061 ➜	1/1/1381:1383,1/1/1416:1417	NA	NA
62	IL_7Q08_062 ➜	1/1/1384:1391,1/1/1411:1415	NA	NA
63	IL_7Q08_063 ➜	1/1/1394:1397,1/1/1406:1408	NA	NA
64	IL_7Q08_064 ➜	1/1/1440:1446,1/1/2332:2337	NA	NA
65	IL_7Q08_065 ➜	1/1/1496:1501,1/1/1509:1512	NA	NA
66	IL_7Q08_066 ➜	1/1/1528:1532,1/1/1581:1586	NA	NA
67	IL_7Q08_067 ➜	1/1/1556:1558,1/1/1573:1574	NA	NA
68	IL_7Q08_068 ➜	1/1/1614:1617,1/1/1820:1822	NA	NA
69	IL_7Q08_069 ➜	1/1/1619:1621,1/1/1814:1818	NA	NA
70	IL_7Q08_070 ➜	1/1/1623:1627,1/1/1807:1812	NA	NA
71	IL_7Q08_071 ➜	1/1/1641:1645,1/1/1802:1806	NA	NA
72	IL_7Q08_072 ➜	1/1/1657:1659,1/1/1782:1784	NA	NA
73	IL_7Q08_073 ➜	1/1/1665:1666,1/1/1774:1776	NA	NA
74	IL_7Q08_074 ➜	1/1/1666:1667,1/1/1772:1774	NA	NA
75	IL_7Q08_075 ➜	1/1/1690:1694,1/1/1743:1748	NA	NA
76	IL_7Q08_076 ➜	1/1/1698:1703,1/1/1733:1739	NA	NA
77	IL_7Q08_077 ➜	1/1/1707:1713,1/1/1723:1729	NA	NA
78	IL_7Q08_078 ➜	1/1/1879:1885,1/1/2324:2327	NA	NA
79	IL_7Q08_079 ➜	1/1/1891:1893,1/1/2316:2318	NA	NA
80	IL_7Q08_080 ➜	1/1/1894:1897,1/1/2314:2315	NA	NA
81	IL_7Q08_081 ➜	1/1/1897:1902,1/1/2311:2314	NA	NA
82	IL_7Q08_082 ➜	1/1/1914:1919,1/1/1924:1930	NA	NA
83	IL_7Q08_083 ➜	1/1/1936:1938,1/1/2084:2086	NA	NA
84	IL_7Q08_084 ➜	1/1/1943:1944,1/1/2076:2079	NA	NA
85	IL_7Q08_085 ➜	1/1/1948:1953,1/1/2062:2072	NA	NA
86	IL_7Q08_086 ➜	1/1/1953:1954,1/1/2060:2062	NA	NA
87	IL_7Q08_087 ➜	1/1/1954:1960,1/1/2055:2060	NA	NA
88	IL_7Q08_088 ➜	1/1/1960:1968,1/1/2046:2055	NA	NA
89	IL_7Q08_089 ➜	1/1/1969:1973,1/1/2042:2045	NA	NA
90	IL_7Q08_090 ➜	1/1/2106:2107,1/1/2301:2303	NA	NA
91	IL_7Q08_091 ➜	1/1/2134:2139,1/1/2151:2158	NA	NA
92	IL_7Q08_092 ➜	1/1/2174:2177,1/1/2223:2224	NA	NA
93	IL_7Q08_093 ➜	1/1/2178:2179,1/1/2219:2222	NA	NA
94	IL_7Q08_094 ➜	1/1/2182:2184,1/1/2215:2216	NA	NA
95	IL_7Q08_095 ➜	1/1/2184:2188,1/1/2213:2215	NA	NA
96	IL_7Q08_096 ➜	1/1/2189:2195,1/1/2206:2212	NA	NA
97	IL_7Q08_097 ➜	1/1/2254:2255,1/1/2285:2288	NA	NA
98	IL_7Q08_098 ➜	1/1/2255:2266,1/1/2282:2285	NA	NA
99	IL_7Q08_099 ➜	1/1/2369:2372,1/1/2958:2960	NA	NA
100	IL_7Q08_100 ➜	1/1/2374:2376,1/1/2953:2956	NA	NA
101	IL_7Q08_101 ➜	1/1/2387:2389,1/1/2783:2784	NA	NA
102	IL_7Q08_102 ➜	1/1/2390:2391,1/1/2779:2782	NA	NA
103	IL_7Q08_103 ➜	1/1/2401:2403,1/1/2576:2579	NA	NA
104	IL_7Q08_104 ➜	1/1/2498:2504,1/1/2556:2559	NA	NA
105	IL_7Q08_105 ➜	1/1/2586:2587,1/1/2597:2599	NA	NA
106	IL_7Q08_106 ➜	1/1/2638:2640,1/1/2658:2662	NA	NA
107	IL_7Q08_107 ➜	1/1/2690:2693,1/1/2707:2710	NA	NA
108	IL_7Q08_108 ➜	1/1/2742:2745,1/1/2759:2760	NA	NA
109	IL_7Q08_109 ➜	1/1/2795:2796,1/1/2837:2839	NA	NA
110	IL_7Q08_110 ➜	1/1/2796:2798,1/1/2835:2837	NA	NA
111	IL_7Q08_111 ➜	1/1/2798:2800,1/1/2834:2835	NA	NA
112	IL_7Q08_112 ➜	1/1/2800:2802,1/1/2830:2834	NA	NA
113	IL_7Q08_113 ➜	1/1/2807:2811,1/1/2821:2825	NA	NA
114	IL_7Q08_114 ➜	1/1/2848:2849,1/1/2921:2923	NA	NA
115	IL_7Q08_115 ➜	1/1/2851:2853,1/1/2915:2919	NA	NA
116	IL_7Q08_116 ➜	1/1/2853:2854,1/1/2912:2915	NA	NA
117	IL_7Q08_117 ➜	1/1/2861:2863,1/1/2884:2886	NA	NA
118	IL_7Q08_118 ➜	1/1/2863:2864,1/1/2881:2884	NA	NA
119	IL_7Q08_119 ➜	1/1/2890:2892,1/1/2898:2900	NA	NA
120	IL_7Q08_120 ➜	1/1/2932:2933,1/1/2942:2944	NA	NA
121	IL_7Q08_121 ➜	1/1/2976:2979,1/1/3111:3116	NA	NA
122	IL_7Q08_122 ➜	1/1/2984:2986,1/1/3012:3014	NA	NA
123	IL_7Q08_123 ➜	1/1/2990:2997,1/1/3002:3008	NA	NA
124	IL_7Q08_124 ➜	1/1/3019:3023,1/1/3063:3066	NA	NA
125	IL_7Q08_125 ➜	1/1/3026:3031,1/1/3056:3060	NA	NA
126	IL_7Q08_126 ➜	1/1/3035:3036,1/1/3049:3052	NA	NA
127	IL_7Q08_127 ➜	1/1/3075:3079,1/1/3099:3103	NA	NA
128	IL_7Q08_128 ➜	1/1/3134:3136,1/1/3249:3251	NA	NA
129	IL_7Q08_129 ➜	1/1/3147:3149,1/1/3175:3176	NA	NA
130	IL_7Q08_130 ➜	1/1/3149:3158,1/1/3169:3175	NA	NA
131	IL_7Q08_131 ➜	1/1/3190:3194,1/1/3223:3225	NA	NA
132	IL_7Q08_132 ➜	1/1/3200:3203,1/1/3214:3217	NA	NA
133	IL_7Q08_133 ➜	1/1/3265:3268,1/1/3276:3279	NA	NA
134	IL_7Q08_134 ➜	1/1/3283:3285,1/1/3352:3353	NA	NA
135	IL_7Q08_135 ➜	1/1/3289:3290,1/1/3346:3348	NA	NA
136	IL_7Q08_136 ➜	1/1/3293:3295,1/1/3338:3343	NA	NA
137	IL_7Q08_137 ➜	1/1/3297:3302,1/1/3332:3336	NA	NA
138	IL_7Q08_138 ➜	1/1/3305:3307,1/1/3328:3329	NA	NA
139	IL_7Q08_139 ➜	1/1/3307:3310,1/1/3325:3328	NA	NA
140	IL_7Q08_140 ➜	1/1/3314:3315,1/1/3318:3321	NA	NA
141	IL_7Q08_141 ➜	1/3/15:16,1/3/63:65	NA	NA
142	IL_7Q08_142 ➜	1/3/21:27,1/3/53:58	NA	NA
143	IL_7Q08_143 ➜	1/3/28:29,1/3/49:52	NA	NA
144	IL_7Q08_144 ➜	1/3/29:30,1/3/47:49	NA	NA
145	IL_7Q08_145 ➜	1/3/32:36,1/3/41:45	NA	NA
146	IL_7Q08_146 ➜	1/3/72:80,1/3/100:106	NA	NA
147	IL_7Q08_147 ➜	1/3/84:87,1/3/94:96	NA	NA
148	IL_7Q08_148 ➜	1/4/44:64,1/4/96:100	NA	NA
149	IL_7Q08_149 ➜	1/4/64:66,1/4/93:96	NA	NA
150	IL_7Q08_150 ➜	1/4/67:68,1/4/90:92	NA	NA
151	IL_7Q08_151 ➜	1/A/24:26,1/A/598:599	NA	NA
152	IL_7Q08_152 ➜	1/A/35:37,1/A/469:471	NA	NA
153	IL_7Q08_153 ➜	1/A/37:41,1/A/464:469	NA	NA
154	IL_7Q08_154 ➜	1/A/42:48,1/A/429:431	NA	NA
155	IL_7Q08_155 ➜	1/A/50:52,1/A/426:427	NA	NA
156	IL_7Q08_156 ➜	1/A/58:63,1/A/87:89	NA	NA
157	IL_7Q08_157 ➜	1/A/64:69,1/A/82:86	NA	NA
158	IL_7Q08_158 ➜	1/A/109:112,1/A/300:303	NA	NA
159	IL_7Q08_159 ➜	1/A/113:116,1/A/298:299	NA	NA
160	IL_7Q08_160 ➜	1/A/117:122,1/A/293:297	NA	NA
161	IL_7Q08_161 ➜	1/A/141:147,1/A/163:170	NA	NA
162	IL_7Q08_162 ➜	1/A/147:150,1/A/160:163	NA	NA
163	IL_7Q08_163 ➜	1/A/184:187,1/A/194:197	NA	NA
164	IL_7Q08_164 ➜	1/A/202:204,1/A/257:261	NA	NA
165	IL_7Q08_165 ➜	1/A/204:206,1/A/255:257	NA	NA
166	IL_7Q08_167 ➜	1/A/263:266,1/A/285:287	NA	NA
167	IL_7Q08_168 ➜	1/A/268:271,1/A/281:283	NA	NA
168	IL_7Q08_169 ➜	1/A/273:274,1/A/277:279	NA	NA
169	IL_7Q08_170 ➜	1/A/309:314,1/A/346:353	NA	NA
170	IL_7Q08_171 ➜	1/A/316:321,1/A/343:344	NA	NA
171	IL_7Q08_172 ➜	1/A/361:363,1/A/374:379	NA	NA
172	IL_7Q08_173 ➜	1/A/387:389,1/A/404:406	NA	NA
173	IL_7Q08_174 ➜	1/A/409:411,1/A/418:420	NA	NA
174	IL_7Q08_175 ➜	1/A/437:439,1/A/461:462	NA	NA
175	IL_7Q08_176 ➜	1/A/441:445,1/A/458:459	NA	NA
176	IL_7Q08_177 ➜	1/A/445:446,1/A/456:458	NA	NA
177	IL_7Q08_178 ➜	1/A/480:485,1/A/499:504	NA	NA
178	IL_7Q08_179 ➜	1/A/514:516,1/A/531:534	NA	NA
179	IL_7Q08_180 ➜	1/A/516:518,1/A/530:531	NA	NA
180	IL_7Q08_181 ➜	1/A/548:555,1/A/585:586	NA	NA
181	IL_7Q08_182 ➜	1/A/555:557,1/A/584:585	NA	NA
182	IL_7Q08_183 ➜	1/A/560:566,1/A/573:581	NA	NA
183	IL_7Q08_184 ➜	1/A/614:620,1/A/1089:1090	NA	NA
184	IL_7Q08_185 ➜	1/A/622:624,1/A/958:960	NA	NA
185	IL_7Q08_186 ➜	1/A/625:629,1/A/953:957	NA	NA
186	IL_7Q08_187 ➜	1/A/730:732,1/A/786:790	NA	NA
187	IL_7Q08_188 ➜	1/A/733:735,1/A/783:785	NA	NA
188	IL_7Q08_189 ➜	1/A/736:738,1/A/778:782	NA	NA
189	IL_7Q08_190 ➜	1/A/738:744,1/A/775:778	NA	NA
190	IL_7Q08_191 ➜	1/A/803:806,1/A/836:837	NA	NA
191	IL_7Q08_192 ➜	1/A/853:855,1/A/942:945	NA	NA
192	IL_7Q08_193 ➜	1/A/856:859,1/A/938:941	NA	NA
193	IL_7Q08_194 ➜	1/A/859:863,1/A/935:938	NA	NA
194	IL_7Q08_195 ➜	1/A/870:873,1/A/909:912	NA	NA
195	IL_7Q08_196 ➜	1/A/878:880,1/A/902:904	NA	NA
196	IL_7Q08_197 ➜	1/A/880:884,1/A/895:902	NA	NA
197	IL_7Q08_198 ➜	1/A/970:975,1/A/999:1001	NA	NA
198	IL_7Q08_199 ➜	1/A/975:979,1/A/995:999	NA	NA
199	IL_7Q08_200 ➜	1/A/1019:1021,1/A/1080:1086	NA	NA
200	IL_7Q08_201 ➜	1/A/1026:1029,1/A/1059:1062	NA	NA
201	IL_7Q08_202 ➜	1/A/1036:1040,1/A/1049:1052	NA	NA
202	IL_7Q08_203 ➜	1/A/1096:1103,1/A/1114:1119	NA	NA
203	IL_7Q08_204 ➜	1/A/1131:1132,1/A/1617:1619	NA	NA
204	IL_7Q08_205 ➜	1/A/1134:1136,1/A/1614:1615	NA	NA
205	IL_7Q08_206 ➜	1/A/1142:1145,1/A/1604:1608	NA	NA
206	IL_7Q08_207 ➜	1/A/1158:1160,1/A/1450:1452	NA	NA
207	IL_7Q08_208 ➜	1/A/1163:1164,1/A/1445:1447	NA	NA
208	IL_7Q08_209 ➜	1/A/1197:1200,1/A/1434:1437	NA	NA
209	IL_7Q08_210 ➜	1/A/1253:1255,1/A/1426:1427	NA	NA
210	IL_7Q08_211 ➜	1/A/1257:1261,1/A/1422:1424	NA	NA
211	IL_7Q08_212 ➜	1/A/1261:1264,1/A/1415:1422	NA	NA
212	IL_7Q08_213 ➜	1/A/1265:1266,1/A/1412:1414	NA	NA
213	IL_7Q08_214 ➜	1/A/1275:1277,1/A/1308:1310	NA	NA
214	IL_7Q08_215 ➜	1/A/1291:1293,1/A/1302:1303	NA	NA
215	IL_7Q08_216 ➜	1/A/1324:1329,1/A/1367:1371	NA	NA
216	IL_7Q08_217 ➜	1/A/1330:1333,1/A/1363:1366	NA	NA
217	IL_7Q08_218 ➜	1/A/1336:1338,1/A/1355:1360	NA	NA
218	IL_7Q08_219 ➜	1/A/1375:1377,1/A/1393:1398	NA	NA
219	IL_7Q08_220 ➜	1/A/1466:1473,1/A/1506:1514	NA	NA
220	IL_7Q08_221 ➜	1/A/1474:1481,1/A/1500:1505	NA	NA
221	IL_7Q08_222 ➜	1/A/1483:1485,1/A/1496:1498	NA	NA
222	IL_7Q08_223 ➜	1/A/1527:1533,1/A/1552:1558	NA	NA
223	IL_7Q08_224 ➜	1/A/1623:1625,1/A/1751:1754	NA	NA
224	IL_7Q08_225 ➜	1/A/1625:1628,1/A/1747:1751	NA	NA
225	IL_7Q08_226 ➜	1/A/1629:1631,1/A/1744:1746	NA	NA
226	IL_7Q08_227 ➜	1/A/1631:1634,1/A/1740:1744	NA	NA
227	IL_7Q08_228 ➜	1/A/1637:1639,1/A/1735:1737	NA	NA
228	IL_7Q08_229 ➜	1/A/1640:1643,1/A/1731:1734	NA	NA
229	IL_7Q08_230 ➜	1/A/1643:1645,1/A/1730:1731	NA	NA
230	IL_7Q08_231 ➜	1/A/1652:1654,1/A/1721:1723	NA	NA
231	IL_7Q08_232 ➜	1/A/1656:1659,1/A/1716:1719	NA	NA
232	IL_7Q08_233 ➜	1/A/1662:1665,1/A/1710:1713	NA	NA
233	IL_7Q08_234 ➜	1/A/1665:1669,1/A/1706:1710	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_7Q08_166 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_7Q08_001 ➜	1/1/112:122,1/1/148:157,1/1/263:267	NA	NA
2	J3_7Q08_002 ➜	1/1/369:376,1/1/403:404,1/4/19:20	NA	NA
3	J3_7Q08_003 ➜	1/1/436:439,1/1/488:490,1/1/616:621	NA	NA
4	J3_7Q08_004 ➜	1/1/497:498,1/1/586:595,1/1/604:609	NA	NA
5	J3_7Q08_005 ➜	1/1/810:816,1/1/901:903,1/1/919:922	NA	NA
6	J3_7Q08_006 ➜	1/1/825:827,1/1/859:863,1/1/888:891	NA	NA
7	J3_7Q08_007 ➜	1/1/982:983,1/1/1058:1062,1/1/1088:1094	NA	NA
8	J3_7Q08_008 ➜	1/1/1225:1228,1/1/1252:1258,1/1/1273:1276	NA	NA
9	J3_7Q08_009 ➜	1/1/1475:1481,1/1/1853:1855,1/1/1867:1870	NA	NA
10	J3_7Q08_010 ➜	1/1/1484:1487,1/1/1833:1839,1/1/1848:1850	NA	NA
11	J3_7Q08_011 ➜	1/1/1522:1527,1/1/1587:1591,1/1/1608:1609	NA	NA
12	J3_7Q08_012 ➜	1/1/1627:1628,1/1/1637:1641,1/1/1806:1807	NA	NA
13	J3_7Q08_013 ➜	1/1/2410:2413,1/1/2490:2495,1/1/2562:2569	NA	NA
14	J3_7Q08_014 ➜	1/1/2507:2510,1/1/2525:2540,1/1/2550:2553	NA	NA
15	J3_7Q08_015 ➜	1/1/2623:2625,1/1/2726:2738,1/1/2764:2770	NA	NA
16	J3_7Q08_016 ➜	1/1/2636:2638,1/1/2662:2664,1/1/2673:2678	NA	NA
17	J3_7Q08_017 ➜	1/1/2858:2861,1/1/2886:2888,1/1/2902:2908	NA	NA
18	J3_7Q08_018 ➜	1/1/3263:3264,1/1/3280:3283,1/1/3353:3355	NA	NA
19	J3_7Q08_019 ➜	1/3/9:14,1/3/66:67,1/3/111:112	NA	NA
20	J3_7Q08_020 ➜	1/A/41:42,1/A/431:437,1/A/462:464	NA	NA
21	J3_7Q08_021 ➜	1/A/631:633,1/A/846:851,1/A/947:951	NA	NA
22	J3_7Q08_022 ➜	1/A/745:748,1/A/758:760,1/A/769:774	NA	NA
23	J3_7Q08_023 ➜	1/A/866:870,1/A/912:921,1/A/928:932	NA	NA
24	J3_7Q08_024 ➜	1/A/1022:1024,1/A/1064:1068,1/A/1075:1079	NA	NA
25	J3_7Q08_025 ➜	1/A/1146:1149,1/A/1568:1574,1/A/1596:1603	NA	NA
26	J3_7Q08_026 ➜	1/A/1153:1156,1/A/1454:1456,1/A/1561:1564	NA	NA
27	J3_7Q08_027 ➜	1/A/1165:1172,1/A/1183:1194,1/A/1440:1444	NA	NA
28	J3_7Q08_028 ➜	1/A/1200:1205,1/A/1248:1252,1/A/1428:1434	NA	NA
29	J3_7Q08_029 ➜	1/A/1267:1273,1/A/1312:1317,1/A/1405:1411	NA	NA
30	J3_7Q08_030 ➜	1/A/1278:1279,1/A/1288:1291,1/A/1303:1307	NA	NA
31	J3_7Q08_031 ➜	1/A/1321:1323,1/A/1372:1375,1/A/1398:1401	NA	NA
32	J3_7Q08_032 ➜	1/A/1456:1460,1/A/1520:1527,1/A/1558:1561	NA	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers

7Q08 Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops