Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/A25S/38:45
geometric
HL_4WF9_006
NA

HL_23481.5*
1/A25S/69:74
geometric
HL_5TBW_002
NA

HL_96776.3*
1/A25S/90:96
geometric
HL_5TBW_003
NA

HL_67216.5*
1/A25S/132:136
geometric
HL_5TBW_004
NA

HL_36982.3*
1/A25S/194:201T-loop with 1 bulged base
geometric
HL_4V9F_010
NA

HL_68493.6*
1/A25S/208:212
geometric
HL_5J7L_143
NA

HL_98557.5*
1/A25S/216:224
geometric
HL_5TBW_007
NA

HL_08002.6*
1/A25S/278:287
geometric
HL_5TBW_008
NA

HL_54035.7*
1/A25S/303:312
geometric
HL_5TBW_009
NA

HL_46142.8*
1/A25S/357:362Other HL
geometric
HL_4LFB_028
NA

HL_43074.18*
1/A25S/382:387GNRA
geometric
HL_5J7L_010
NA

HL_43074.18*
1/A25S/543:548
geometric
HL_5TBW_012
NA

HL_94386.1*
1/A25S/599:604
geometric
HL_3OXE_002
NA

HL_32527.3*
1/A25S/640:649T-loop with 2 stacked bulged bases
geometric
HL_5TBW_014
NA

HL_33239.17*
1/A25S/686:694
geometric
HL_5TBW_015
NA

HL_80105.3*
1/A25S/707:712GNRA
geometric
HL_5TBW_016
NA

HL_43074.18*
1/A25S/732:737GNRA
geometric
HL_5TBW_017
NA

HL_43074.18*
1/A25S/763:768
geometric
HL_5TBW_018
NA

HL_00996.1*
1/A25S/844:849Other HL
geometric
HL_2CZJ_007
NA

HL_79299.11*
1/A25S/876:885
geometric
HL_5TBW_020
NA

HL_39334.5*
1/A25S/910:918
geometric
HL_5TBW_021
NA

HL_05832.1*
1/A25S/958:963
geometric
HL_2Y8W_001
NA

HL_69459.1*
1/A25S/1076:1083
geometric
HL_5TBW_024
NA

HL_54035.7*
1/A25S/1126:1132GNRA
geometric
HL_5TBW_025
NA

HL_43074.18*
1/A25S/1148:1155
geometric
HL_5TBW_026
NA

HL_72451.5*
1/A25S/1239:1249
geometric
HL_2ZNI_001
NA

HL_40469.1*
1/A25S/1266:1275
geometric
HL_5TBW_028
NA

HL_87219.4*
1/A25S/1347:1357
geometric
HL_5TBW_029
NA

HL_36095.1*
1/A25S/1403:1408GNRA
geometric
HL_5TBW_030
NA

HL_43074.18*
1/A25S/1462:1470T-loop with 2 stacked bulged bases
geometric
HL_5TBW_031
NA

HL_33239.17*
1/A25S/1506:1512
geometric
HL_5TBW_032
NA

HL_86880.5*
1/A25S/1544:1549Other HL
geometric
HL_5TBW_033
NA

HL_43074.18*
1/A25S/1561:1578NANA
1/A25S/1599:1608
geometric
HL_5TBW_035
NA

HL_78457.4*
1/A25S/1634:1639GNRA
geometric
HL_5TBW_036
NA

HL_43074.18*
1/A25S/1680:1688
geometric
HL_5TBW_037
NA

HL_73793.2*
1/A25S/1719:1725
geometric
HL_5TBW_038
NA

HL_00923.1*
1/A25S/1760:1765
geometric
HL_4WF9_003
NA

HL_62869.3*
1/A25S/1792:1796
geometric
HL_4V88_192
NA

HL_69353.7*
1/A25S/1844:1851
geometric
HL_5TBW_006
NA

HL_98557.5*
1/A25S/1862:1868GNRA with one bulged base
geometric
HL_5TBW_042
NA

HL_02361.6*
1/A25S/1923:1928
geometric
HL_7RQB_042
NA

HL_79299.11*
1/A25S/2110:2114
geometric
HL_5TBW_045
NA

HL_99223.1*
1/A25S/2135:2145
geometric
HL_5TBW_046
NA

HL_43613.4*
1/A25S/2164:2170GNRA
geometric
HL_5TBW_047
NA

HL_43074.18*
1/A25S/2220:2225Other HL
geometric
HL_5TBW_048
NA

HL_43074.18*
1/A25S/2253:2263
geometric
HL_5TBW_049
NA

HL_98248.1*
1/A25S/2292:2300
geometric
HL_5TBW_050
NA

HL_53760.4*
1/A25S/2369:2378
geometric
HL_5TBW_051
NA

HL_90642.5*
1/A25S/2465:2490NANA
1/A25S/2534:2545NANA
1/A25S/2568:2573NANA
1/A25S/2616:2624
geometric
HL_4WF9_049
NA

HL_46891.3*
1/A25S/2633:2645
geometric
HL_5TBW_055
NA

HL_19870.5*
1/A25S/2673:2681
geometric
HL_5TBW_056
NA

HL_76406.3*
1/A25S/2693:2700
geometric
HL_5TBW_057
NA

HL_46142.8*
1/A25S/2724:2732
geometric
HL_5TBW_058
NA

HL_14725.1*
1/A25S/2744:2749GNRA
geometric
HL_5TBW_059
NA

HL_43074.18*
1/A25S/2776:2784
geometric
HL_5TBW_060
NA

HL_46142.8*
1/A25S/2840:2848
geometric
HL_5TBW_061
NA

HL_36421.5*
1/A25S/2896:2905NANA
1/A25S/2920:2926
geometric
HL_4WF9_058
NA

HL_26055.6*
1/A25S/2963:2968GNRA
geometric
HL_4WF9_015
NA

HL_43074.18*
1/A25S/3025:3030
geometric
HL_7RQB_064
NA

HL_43074.18*
1/A25S/3068:3073Ribsomal LSU H95
geometric
HL_4V9F_067
NA

HL_67719.1*
1/A25S/3110:3124
geometric
HL_5TBW_067
NA

HL_56677.5*
1/A25S/3194:3197
geometric
HL_5TBW_068
NA

HL_46546.1*
1/A25S/3240:3247
geometric
HL_2Y9H_003
NA

HL_98557.5*
1/A25S/3303:3311
geometric
HL_5TBW_070
NA

HL_05018.6*
1/A25S/3350:3353
geometric
HL_6U8D_003
NA

HL_18722.3*
1/A58S/69:89NANA
1/A58S/108:114
geometric
HL_5TBW_075
NA

HL_06569.2*
1/A58S/124:129
geometric
HL_5TBW_076
NA

HL_60357.1*
1/A5S/36:41NANA
1/A5S/88:93NANA
1/APTN/13:22NANA
1/APTN/31:39NANA
1/APTN/53:61NANA

Problematic loops

#loop idProblemSequence
HL_7TOP_023NA
HL_7TOP_044NA

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/A25S/3:4,
1/A58S/155:156
NANA
1/A25S/7:8,
1/A58S/150:152
Single bulged C
geometric
IL_5TBW_002
NA

IL_61258.10*
1/A25S/13:15,
1/A58S/144:145
Single bulged U
geometric
IL_5TBW_003
NA

IL_83039.11*
1/A25S/27:28,
1/A25S/56:58
Single stack bend
geometric
IL_5TBW_004
NA

IL_04038.4*
1/A25S/31:38,
1/A25S/45:53
tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA

IL_22863.1*
1/A25S/82:89,
1/A25S/97:103

geometric
IL_5TBW_006
NA

IL_29509.1*
1/A25S/123:124,
1/A25S/144:149

geometric
IL_5TBW_007
NA

IL_19724.1*
1/A25S/125:127,
1/A25S/141:143

geometric
IL_5TBW_008
NA

IL_01312.13*
1/A25S/163:165,
1/A25S/257:258
Single stack bend
geometric
IL_5TBW_009
NA

IL_04038.4*
1/A25S/169:170,
1/A25S/248:253

geometric
IL_5TBW_010
NA

IL_76195.1*
1/A25S/177:178,
1/A25S/238:241
Major groove platform
geometric
IL_7A0S_073
NA

IL_80663.10*
1/A25S/189:191,
1/A25S/204:205
Single bulged U
geometric
IL_4V9F_013
NA

IL_83039.11*
1/A25S/337:339,
1/A58S/25:26
Single bulged A
geometric
IL_5TBW_013
NA

IL_80007.16*
1/A25S/376:379,
1/A25S/390:403

geometric
IL_5TBW_014
NA

IL_60992.5*
1/A25S/404:410,
1/A58S/13:19
Triple sheared with non-canonical cWW
geometric
IL_5TBW_015
NA

IL_66414.5*
1/A25S/429:431,
1/A25S/628:630

geometric
IL_5TBW_016
NA

IL_01312.13*
1/A25S/512:513,
1/A25S/577:579
Single bulged A
geometric
IL_5TBW_018
NA

IL_40508.4*
1/A25S/517:525,
1/A25S/567:573

geometric
IL_5TBW_019
NA

IL_41593.1*
1/A25S/531:538,
1/A25S/553:561

geometric
IL_5TBW_020
NA

IL_94501.1*
1/A25S/668:670,
1/A25S/792:794

geometric
IL_5TBW_021
NA

IL_01312.13*
1/A25S/680:684,
1/A25S/696:700

geometric
IL_5TBW_022
NA

IL_92343.1*
1/A25S/725:728,
1/A25S/741:745
UAA/GAN
geometric
IL_5TBW_023
NA

IL_53523.5*
1/A25S/752:753,
1/A25S/779:781
Single bulged A
geometric
IL_5TBW_024
NA

IL_80007.16*
1/A25S/755:756,
1/A25S/775:777
Single bulged U
geometric
IL_5TBW_025
NA

IL_83039.11*
1/A25S/758:763,
1/A25S/768:773

geometric
IL_5TBW_026
NA

IL_19954.1*
1/A25S/803:805,
1/A25S/938:940

geometric
IL_5TBW_027
NA

IL_01312.13*
1/A25S/805:809,
1/A25S/931:938

geometric
IL_5TBW_028
NA

IL_17470.5*
1/A25S/833:834,
1/A25S/859:861
Single bulged G
geometric
IL_7RQB_020
NA

IL_59137.10*
1/A25S/834:838,
1/A25S/855:859
Triple sheared
geometric
IL_4WF9_024
NA

IL_56467.6*
1/A25S/869:872,
1/A25S/888:890
Major groove platform with extra cWW
geometric
IL_5TBW_031
NA

IL_95485.6*
1/A25S/873:875,
1/A25S/886:887
Single bulged U
geometric
IL_5TBW_032
NA

IL_83039.11*
1/A25S/907:909,
1/A25S/919:923
Multiple bulged bases
geometric
IL_5TBW_033
NA

IL_90991.5*
1/A25S/954:956,
1/A25S/965:967

geometric
IL_5TBW_034
NA

IL_01312.13*
1/A25S/969:970,
1/A25S/1111:1113
Single stack bend
geometric
IL_5TBW_035
NA

IL_04038.4*
1/A25S/977:981,
1/A25S/1102:1104

geometric
IL_5TBW_036
NA

IL_67474.3*
1/A25S/983:985,
1/A25S/1099:1100
Single bulged G
geometric
IL_5TBW_037
NA

IL_59137.10*
1/A25S/991:997,
1/A25S/1052:1058
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
NA

IL_93830.2*
1/A25S/997:998,
1/A25S/1050:1052
Minor groove platform
geometric
IL_5TBW_039
NA

IL_06437.11*
1/A25S/999:1004,
1/A25S/1046:1049
C-loop
geometric
IL_5TBW_040
NA

IL_63596.4*
1/A25S/1005:1009,
1/A25S/1041:1045

geometric
IL_4V88_422
NA

IL_79670.1*
1/A25S/1009:1011,
1/A25S/1039:1041

geometric
IL_5TBW_042
NA

IL_01312.13*
1/A25S/1013:1018,
1/A25S/1034:1037
Other IL
geometric
IL_5TBW_043
NA

IL_08757.3*
1/A25S/1018:1020,
1/A25S/1033:1034
Single stack bend
geometric
IL_5J7L_032
NA

IL_04038.4*
1/A25S/1069:1071,
1/A25S/1087:1089
CC cWW
geometric
IL_4KNQ_002
NA

IL_01312.13*
1/A25S/1074:1076,
1/A25S/1083:1084
Single bulged A
geometric
IL_5TBW_045
NA

IL_80007.16*
1/A25S/1120:1122,
1/A25S/1136:1138

geometric
IL_4LFB_010
NA

IL_01312.13*
1/A25S/1167:1171,
1/A25S/1328:1332
UAA/GAN
geometric
IL_5TBW_048
NA

IL_53523.5*
1/A25S/1173:1180,
1/A25S/1325:1326
SSU/LSU pseudoknot
geometric
IL_5TBW_049
NA

IL_15861.6*
1/A25S/1180:1182,
1/A25S/1324:1325
Single bulged U
geometric
IL_5TBW_050
NA

IL_83039.11*
1/A25S/1187:1194,
1/A25S/1314:1319

geometric
IL_5TBW_051
NA

IL_17971.1*
1/A25S/1194:1205,
1/A25S/1299:1314

geometric
IL_5TBW_052
NA

IL_94878.1*
1/A25S/1207:1209,
1/A25S/1296:1297
Single bulged U
geometric
IL_5TBW_053
NA

IL_83039.11*
1/A25S/1218:1226,
1/A25S/1283:1287
NANA
1/A25S/1234:1239,
1/A25S/1249:1254
NANA
1/A25S/1262:1266,
1/A25S/1275:1277
Major groove platform with extra cWW
geometric
IL_1MMS_002
NA

IL_95485.6*
1/A25S/1376:1378,
1/A25S/1428:1431
Isolated cWS basepair
geometric
IL_5TBW_057
NA

IL_01312.13*
1/A25S/1385:1387,
1/A25S/1420:1421
Single bulged A
geometric
IL_5TBW_058
NA

IL_80007.16*
1/A25S/1388:1395,
1/A25S/1415:1419
Kink-turn
geometric
IL_5TBW_059
NA

IL_29549.9*
1/A25S/1398:1400,
1/A25S/1411:1412
Single bulged A
geometric
IL_5TBW_060
NA

IL_80007.16*
1/A25S/1444:1450,
1/A25S/2354:2359
7x6 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_061
NA

IL_35110.5*
1/A25S/1501:1505,
1/A25S/1513:1515
C-loop
geometric
IL_7RQB_051
NA

IL_63596.4*
1/A25S/1532:1536,
1/A25S/1585:1590
UAA/GAN
geometric
IL_5TBW_063
NA

IL_53523.5*
1/A25S/1618:1621,
1/A25S/1824:1826
Other IL
geometric
IL_5TBW_064
NA

IL_87630.5*
1/A25S/1623:1627,
1/A25S/1816:1822
NANA
1/A25S/1627:1631,
1/A25S/1811:1816

geometric
IL_5TBW_066
NA

IL_74736.1*
1/A25S/1645:1649,
1/A25S/1806:1810
Triple sheared
geometric
IL_5TBW_067
NA

IL_56467.6*
1/A25S/1661:1663,
1/A25S/1786:1788

geometric
IL_5TBW_068
NA

IL_01312.13*
1/A25S/1669:1670,
1/A25S/1778:1780
Single bulged C
geometric
IL_5TBW_069
NA

IL_61258.10*
1/A25S/1670:1671,
1/A25S/1776:1778
Single stack bend
geometric
IL_5TBW_070
NA

IL_72766.2*
1/A25S/1694:1698,
1/A25S/1747:1752

geometric
IL_5TBW_071
NA

IL_14397.1*
1/A25S/1702:1707,
1/A25S/1737:1743

geometric
IL_5TBW_072
NA

IL_98876.1*
1/A25S/1711:1717,
1/A25S/1727:1733
Kink-turn
geometric
IL_5TBW_073
NA

IL_76900.1*
1/A25S/1883:1889,
1/A25S/2346:2349

geometric
IL_5TBW_074
NA

IL_79393.8*
1/A25S/1895:1897,
1/A25S/2338:2340
Isolated tWW turn
geometric
IL_4WF9_063
NA

IL_54997.5*
1/A25S/1898:1901,
1/A25S/2336:2337
Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA

IL_80663.10*
1/A25S/1901:1906,
1/A25S/2333:2336
Intercalated tWH
geometric
IL_4V9F_062
NA

IL_01312.13*
1/A25S/1918:1923,
1/A25S/1928:1934
tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
NA

IL_66584.5*
1/A25S/1940:1942,
1/A25S/2106:2108

geometric
IL_5TBW_079
NA

IL_01312.13*
1/A25S/1947:1948,
1/A25S/2098:2101

geometric
IL_5TBW_080
NA

IL_76195.1*
1/A25S/2128:2129,
1/A25S/2323:2325
Single bulged A
geometric
IL_5TBW_082
NA

IL_80007.16*
1/A25S/2156:2161,
1/A25S/2173:2180
Kink-turn related
geometric
IL_5TBW_083
NA

IL_95993.1*
1/A25S/2196:2199,
1/A25S/2245:2246
Major groove outside cWW, minor groove, intercalation pocket
geometric
IL_5TBW_084
NA

IL_72766.2*
1/A25S/2200:2201,
1/A25S/2241:2244
Major groove outside cWW, minor groove, intercalation pocket
geometric
IL_4V9F_067
NA

IL_13730.12*
1/A25S/2204:2206,
1/A25S/2237:2238
Single bulged U
geometric
IL_5TBW_086
NA

IL_21340.1*
1/A25S/2206:2210,
1/A25S/2235:2237
Major groove platform with extra pair
geometric
IL_5TBW_087
NA

IL_87630.5*
1/A25S/2211:2217,
1/A25S/2228:2234

geometric
IL_5TBW_088
NA

IL_36973.5*
1/A25S/2276:2277,
1/A25S/2307:2310
Multiple bulged bases
geometric
IL_5TBW_089
NA

IL_69632.1*
1/A25S/2277:2288,
1/A25S/2304:2307

geometric
IL_5TBW_090
NA

IL_45481.1*
1/A25S/2391:2394,
1/A25S/2986:2988
Major groove platform with extra pair
geometric
IL_5TBW_091
NA

IL_87630.5*
1/A25S/2396:2398,
1/A25S/2981:2984
Minor groove platform with intercalation
geometric
IL_5TBW_092
NA

IL_86964.1*
1/A25S/2409:2411,
1/A25S/2811:2812
Single bulged U
geometric
IL_5TBW_093
NA

IL_83039.11*
1/A25S/2412:2413,
1/A25S/2807:2810
Minor groove platform
geometric
IL_7RQB_081
NA

IL_06437.11*
1/A25S/2423:2425,
1/A25S/2604:2607
Isolated tHS basepair with bulges
geometric
IL_5TBW_095
NA

IL_38958.6*
1/A25S/2520:2526,
1/A25S/2584:2587

geometric
IL_5TBW_096
NA

IL_98353.1*
1/A25S/2614:2615,
1/A25S/2625:2627
Single bulged A
geometric
IL_5TBW_098
NA

IL_80007.16*
1/A25S/2666:2668,
1/A25S/2686:2690
Isolated tHS basepair with bulges
geometric
IL_5TBW_099
NA

IL_38958.6*
1/A25S/2718:2721,
1/A25S/2735:2738
Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA

IL_85877.10*
1/A25S/2770:2773,
1/A25S/2787:2788
Single stack bend
geometric
IL_5TBW_070
NA

IL_72766.2*
1/A25S/2823:2824,
1/A25S/2865:2867
Major groove platform
geometric
IL_5TBW_102
NA

IL_80663.10*
1/A25S/2824:2826,
1/A25S/2863:2865

geometric
IL_5TBW_103
NA

IL_05265.1*
1/A25S/2826:2828,
1/A25S/2862:2863
Major groove platform
geometric
IL_5TBW_104
NA

IL_80663.10*
1/A25S/2828:2830,
1/A25S/2858:2862

geometric
IL_5TBW_105
NA

IL_07931.5*
1/A25S/2835:2839,
1/A25S/2849:2853
Triple sheared
geometric
IL_5TBW_106
NA

IL_56467.6*
1/A25S/2876:2877,
1/A25S/2949:2951
Major groove platform
geometric
IL_5TBW_107
NA

IL_80663.10*
1/A25S/2879:2881,
1/A25S/2943:2947
Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA

IL_01312.13*
1/A25S/2881:2882,
1/A25S/2940:2943
Multiple bulged bases
geometric
IL_5TBW_109
NA

IL_13730.12*
1/A25S/2889:2891,
1/A25S/2912:2914

geometric
IL_5TBW_110
NA

IL_01312.13*
1/A25S/2891:2892,
1/A25S/2909:2912
Minor groove platform with intercalation
geometric
IL_5TBW_111
NA

IL_95601.1*
1/A25S/2918:2920,
1/A25S/2926:2928

geometric
IL_5TBW_112
NA

IL_01312.13*
1/A25S/2960:2961,
1/A25S/2970:2972
Single bulged A
geometric
IL_1CSL_002
NA

IL_80007.16*
1/A25S/3004:3007,
1/A25S/3139:3144
Double sheared
geometric
IL_5TBW_114
NA

IL_09705.7*
1/A25S/3012:3014,
1/A25S/3040:3042

geometric
IL_2OE8_001
NA

IL_01312.13*
1/A25S/3018:3025,
1/A25S/3030:3036
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA

IL_04346.5*
1/A25S/3047:3051,
1/A25S/3091:3094
Major groove minor groove platform with tHH
geometric
IL_5TBW_117
NA

IL_28060.3*
1/A25S/3054:3059,
1/A25S/3084:3088
UAA/GAN related
geometric
IL_5TBW_118
NA

IL_53523.5*
1/A25S/3063:3064,
1/A25S/3077:3080
Multiple bulged bases
geometric
IL_5TBW_119
NA

IL_13730.12*
1/A25S/3103:3107,
1/A25S/3127:3131
UAA/GAN
geometric
IL_5TBW_120
NA

IL_53523.5*
1/A25S/3164:3166,
1/A25S/3284:3286

geometric
IL_3LA5_001
NA

IL_01312.13*
1/A25S/3168:3170,
1/A25S/3280:3282

geometric
IL_5B2P_001
NA

IL_01312.13*
1/A25S/3177:3179,
1/A25S/3210:3211
Single bulged A
geometric
IL_5TBW_123
NA

IL_80007.16*
1/A25S/3179:3188,
1/A25S/3204:3210

geometric
IL_5TBW_124
NA

IL_56867.1*
1/A25S/3193:3194,
1/A25S/3197:3199
Single bulged U
geometric
IL_5TBW_125
NA

IL_83039.11*
1/A25S/3225:3229,
1/A25S/3258:3260

geometric
IL_5TBW_126
NA

IL_50789.1*
1/A25S/3233:3235,
1/A25S/3252:3254

geometric
IL_4M4O_002
NA

IL_01312.13*
1/A25S/3235:3238,
1/A25S/3249:3252
Tandem non-canonical cWW pairs
geometric
IL_4UYK_003
NA

IL_85877.10*
1/A25S/3300:3303,
1/A25S/3311:3314
Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA

IL_85877.10*
1/A25S/3318:3320,
1/A25S/3387:3388
Single bulged U
geometric
IL_5TBW_130
NA

IL_83039.11*
1/A25S/3324:3325,
1/A25S/3381:3383
Single bulged U
geometric
IL_2A64_002
NA

IL_83039.11*
1/A25S/3328:3330,
1/A25S/3373:3378
Isolated non-canonical cWW with bulges
geometric
IL_5TBW_132
NA

IL_55456.1*
1/A25S/3332:3337,
1/A25S/3367:3371

geometric
IL_5TBW_133
NA

IL_47002.1*
1/A25S/3340:3342,
1/A25S/3363:3364
Single bulged U
geometric
IL_5TBW_134
NA

IL_83039.11*
1/A25S/3342:3345,
1/A25S/3360:3363
tWS-tSW
geometric
IL_5TBW_135
NA

IL_09705.7*
1/A25S/3349:3350,
1/A25S/3353:3356
Multiple bulged bases
geometric
IL_5TBW_136
NA

IL_13730.12*
1/A58S/44:64,
1/A58S/96:100

geometric
IL_5TBW_144
NA

IL_23735.1*
1/A58S/64:66,
1/A58S/93:96
Isolated non-canonical cWW with bulges
geometric
IL_5TBW_145
NA

IL_55456.1*
1/A58S/68:69,
1/A58S/89:91
Single bulged U
geometric
IL_5TBW_146
NA

IL_83039.11*
1/A5S/15:16,
1/A5S/63:65
NANA
1/A5S/21:27,
1/A5S/53:58
NANA
1/A5S/28:29,
1/A5S/49:52
NANA
1/A5S/29:30,
1/A5S/47:49
NANA
1/A5S/32:36,
1/A5S/41:45
NANA
1/A5S/72:80,
1/A5S/100:106
NANA
1/A5S/84:87,
1/A5S/94:96
NANA

Problematic loops

#loop idProblemSequence
IL_7TOP_017NA

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/A25S/113:123,
1/A25S/149:158,
1/A25S/263:267
NANA
1/A25S/369:376,
1/A25S/403:404,
1/A58S/19:20
NANA
1/A25S/502:503,
1/A25S/588:597,
1/A25S/606:611
NANA
1/A25S/814:820,
1/A25S/905:907,
1/A25S/923:926
NANA
1/A25S/828:831,
1/A25S/863:867,
1/A25S/892:897
NANA
1/A25S/986:987,
1/A25S/1062:1066,
1/A25S/1092:1098
NANA
1/A25S/1230:1233,
1/A25S/1255:1262,
1/A25S/1277:1279
NANA
1/A25S/1479:1485,
1/A25S/1857:1859,
1/A25S/1871:1874
NANA
1/A25S/1488:1491,
1/A25S/1837:1843,
1/A25S/1852:1854
NANA
1/A25S/1526:1531,
1/A25S/1591:1595,
1/A25S/1612:1613
NANA
1/A25S/1631:1632,
1/A25S/1641:1645,
1/A25S/1810:1811
NANA
1/A25S/2432:2435,
1/A25S/2512:2517,
1/A25S/2590:2597
NANA
1/A25S/2664:2666,
1/A25S/2690:2692,
1/A25S/2701:2706
NANA
1/A25S/2886:2889,
1/A25S/2914:2916,
1/A25S/2930:2936
NANA
1/A25S/3298:3300,
1/A25S/3314:3318,
1/A25S/3388:3390
NANA
1/A5S/9:14,
1/A5S/66:67,
1/A5S/111:112
NANA

Problematic loops

No problematic loops


Coloring options:
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