Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7TOP_0011/A25S/38:45No text annotation
Not in a motif group
homologous
HL_8C3A_001
HL_06192.2
HL_7TOP_0021/A25S/69:74No text annotation
Not in a motif group
homologous
HL_8C3A_002
HL_02862.2
HL_7TOP_0031/A25S/90:96No text annotation
Not in a motif group
homologous
HL_8C3A_003
HL_67216.7
HL_7TOP_0041/A25S/132:136No text annotation
Not in a motif group
homologous
HL_8C3A_004
HL_98426.1
HL_7TOP_0051/A25S/194:201No text annotation
Not in a motif group
homologous
HL_8C3A_005
HL_89380.2
HL_7TOP_0061/A25S/208:212No text annotation
Not in a motif group
homologous
HL_8C3A_006
HL_98984.2
HL_7TOP_0071/A25S/216:224No text annotation
Not in a motif group
homologous
HL_8C3A_007
HL_08002.9
HL_7TOP_0081/A25S/278:287No text annotation
Not in a motif group
homologous
HL_8C3A_008
HL_71554.2
HL_7TOP_0091/A25S/303:312No text annotation
Not in a motif group
homologous
HL_8C3A_009
HL_12078.2
HL_7TOP_0101/A25S/357:362No text annotation
Not in a motif group
homologous
HL_8C3A_010
HL_42097.2
HL_7TOP_0111/A25S/382:387No text annotation
Not in a motif group
homologous
HL_8C3A_011
HL_42097.2
HL_7TOP_0121/A25S/543:548No text annotation
Not in a motif group
geometric
HL_5TBW_012
HL_86373.2
HL_7TOP_0131/A25S/599:604No text annotation
Not in a motif group
geometric
HL_3OXE_002
HL_42097.2
HL_7TOP_0141/A25S/640:649No text annotation
Not in a motif group
homologous
HL_8C3A_014
HL_89380.2
HL_7TOP_0151/A25S/686:694No text annotation
Not in a motif group
homologous
HL_8C3A_015
HL_03345.1
HL_7TOP_0161/A25S/707:712No text annotation
Not in a motif group
homologous
HL_8C3A_016
HL_42097.2
HL_7TOP_0171/A25S/732:737GNRA
Not in a motif group
geometric
HL_5TBW_017
HL_42097.2
HL_7TOP_0181/A25S/763:768No text annotation
Not in a motif group
geometric
HL_5TBW_018
HL_34168.2
HL_7TOP_0191/A25S/844:849No text annotation
Not in a motif group
homologous
HL_8C3A_019
HL_42097.2
HL_7TOP_0201/A25S/876:885No text annotation
Not in a motif group
homologous
HL_8C3A_020
HL_39334.6
HL_7TOP_0211/A25S/910:918No text annotation
Not in a motif group
homologous
HL_8C3A_021
HL_33817.1
HL_7TOP_0221/A25S/958:963No text annotation
Not in a motif group
homologous
HL_8C3A_022
HL_96598.1
HL_7TOP_0241/A25S/1076:1083No text annotation
Not in a motif group
geometric
HL_5TBW_024
HL_71554.2
HL_7TOP_0251/A25S/1126:1132No text annotation
Not in a motif group
homologous
HL_8C3A_025
HL_42097.2
HL_7TOP_0261/A25S/1148:1155No text annotation
Not in a motif group
homologous
HL_8C3A_026
HL_64430.2
HL_7TOP_0271/A25S/1239:1249No text annotation
Not in a motif group
homologous
HL_8C3A_027
HL_07145.1
HL_7TOP_0281/A25S/1266:1275No text annotation
Not in a motif group
geometric
HL_5TBW_028
HL_09136.1
HL_7TOP_0291/A25S/1347:1357No text annotation
Not in a motif group
geometric
HL_5TBW_029
HL_89098.1
HL_7TOP_0301/A25S/1403:1408No text annotation
Not in a motif group
homologous
HL_8C3A_030
HL_42097.2
HL_7TOP_0311/A25S/1462:1470No text annotation
Not in a motif group
homologous
HL_8C3A_031
HL_89380.2
HL_7TOP_0321/A25S/1506:1512No text annotation
Not in a motif group
homologous
HL_8C3A_032
HL_46680.1
HL_7TOP_0331/A25S/1544:1549No text annotation
Not in a motif group
homologous
HL_8C3A_033
HL_76539.2
HL_7TOP_0341/A25S/1561:1578No text annotation
Not in a motif group
HL_7TOP_0351/A25S/1599:1608No text annotation
Not in a motif group
homologous
HL_8C3A_035
HL_69023.2
HL_7TOP_0361/A25S/1634:1639No text annotation
Not in a motif group
homologous
HL_8C3A_036
HL_42097.2
HL_7TOP_0371/A25S/1680:1688No text annotation
Not in a motif group
homologous
HL_8C3A_037
HL_60812.1
HL_7TOP_0381/A25S/1719:1725No text annotation
Not in a motif group
homologous
HL_8C3A_038
HL_86373.2
HL_7TOP_0391/A25S/1760:1765No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_7TOP_0401/A25S/1792:1796No text annotation
Not in a motif group
homologous
HL_8C3A_040
HL_49678.1
HL_7TOP_0411/A25S/1844:1851No text annotation
Not in a motif group
homologous
HL_8C3A_041
HL_64430.2
HL_7TOP_0421/A25S/1862:1868No text annotation
Not in a motif group
homologous
HL_8C3A_042
HL_42097.2
HL_7TOP_0431/A25S/1923:1928No text annotation
Not in a motif group
geometric
HL_7RQB_042
HL_03562.2
HL_7TOP_0451/A25S/2110:2114No text annotation
Not in a motif group
homologous
HL_8C3A_045
HL_28980.1
HL_7TOP_0461/A25S/2135:2145No text annotation
Not in a motif group
homologous
HL_8C3A_046
HL_43613.5
HL_7TOP_0471/A25S/2164:2170No text annotation
Not in a motif group
homologous
HL_8C3A_047
HL_42097.2
HL_7TOP_0481/A25S/2220:2225No text annotation
Not in a motif group
homologous
HL_8C3A_048
HL_42097.2
HL_7TOP_0491/A25S/2253:2263No text annotation
Not in a motif group
homologous
HL_8C3A_049
HL_71924.2
HL_7TOP_0501/A25S/2292:2300No text annotation
Not in a motif group
homologous
HL_8C3A_050
HL_51824.1
HL_7TOP_0511/A25S/2369:2378No text annotation
Not in a motif group
homologous
HL_8C3A_051
HL_90642.6
HL_7TOP_0521/A25S/2465:2490No text annotation
Not in a motif group
HL_7TOP_0531/A25S/2534:2545No text annotation
Not in a motif group
HL_7TOP_0541/A25S/2568:2573No text annotation
Not in a motif group
HL_7TOP_0551/A25S/2616:2624No text annotation
Not in a motif group
homologous
HL_8C3A_055
HL_53171.2
HL_7TOP_0561/A25S/2633:2645No text annotation
Not in a motif group
homologous
HL_8C3A_056
HL_19870.6
HL_7TOP_0571/A25S/2673:2681No text annotation
Not in a motif group
homologous
HL_8C3A_057
HL_76406.4
HL_7TOP_0581/A25S/2693:2700No text annotation
Not in a motif group
homologous
HL_8C3A_058
HL_12078.2
HL_7TOP_0591/A25S/2724:2732No text annotation
Not in a motif group
homologous
HL_8C3A_059
HL_92229.2
HL_7TOP_0601/A25S/2744:2749No text annotation
Not in a motif group
homologous
HL_8C3A_060
HL_42097.2
HL_7TOP_0611/A25S/2776:2784No text annotation
Not in a motif group
homologous
HL_8C3A_061
HL_96598.1
HL_7TOP_0621/A25S/2840:2848No text annotation
Not in a motif group
homologous
HL_8C3A_062
HL_06192.2
HL_7TOP_0631/A25S/2896:2905No text annotation
Not in a motif group
HL_7TOP_0641/A25S/2920:2926No text annotation
Not in a motif group
geometric
HL_4WF9_058
HL_43656.2
HL_7TOP_0651/A25S/2963:2968No text annotation
Not in a motif group
homologous
HL_8C3A_065
HL_42097.2
HL_7TOP_0661/A25S/3025:3030No text annotation
Not in a motif group
geometric
HL_7RQB_064
HL_42097.2
HL_7TOP_0671/A25S/3068:3073No text annotation
Not in a motif group
homologous
HL_8C3A_067
HL_46680.1
HL_7TOP_0681/A25S/3110:3124No text annotation
Not in a motif group
homologous
HL_8C3A_068
HL_56677.7
HL_7TOP_0691/A25S/3194:3197No text annotation
Not in a motif group
geometric
HL_5TBW_068
HL_98426.1
HL_7TOP_0701/A25S/3240:3247No text annotation
Not in a motif group
geometric
HL_2Y9H_003
HL_16173.1
HL_7TOP_0711/A25S/3303:3311No text annotation
Not in a motif group
homologous
HL_8C3A_071
HL_27930.1
HL_7TOP_0721/A25S/3350:3353No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_7TOP_0731/A58S/69:89No text annotation
Not in a motif group
HL_7TOP_0741/A58S/108:114No text annotation
Not in a motif group
geometric
HL_5TBW_075
HL_87939.1
HL_7TOP_0751/A58S/124:129No text annotation
Not in a motif group
geometric
HL_5TBW_076
HL_96851.2
HL_7TOP_0761/A5S/36:41No text annotation
Not in a motif group
geometric
HL_5TBW_185
HL_87939.1
HL_7TOP_0771/A5S/88:93GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_42097.2
HL_7TOP_0781/APTN/13:22No text annotation
Not in a motif group
geometric
HL_6JXM_001
HL_25462.2
HL_7TOP_0791/APTN/31:39tRNA anticodon loop
Not in a motif group
geometric
HL_4V9Q_214
HL_53597.2
HL_7TOP_0801/APTN/53:61T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_6PMO_005
HL_22280.1

Problematic loops

#loop idProblemSequence
HL_7TOP_023No text annotation
HL_7TOP_044No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7TOP_0011/A25S/3:4,
1/A58S/155:156
No text annotation
Not in a motif group
IL_7TOP_0021/A25S/7:8,
1/A58S/150:152
No text annotation
Not in a motif group
homologous
IL_8C3A_002
IL_61258.12
IL_7TOP_0031/A25S/13:15,
1/A58S/144:145
No text annotation
Not in a motif group
homologous
IL_8C3A_003
IL_83039.14
IL_7TOP_0041/A25S/27:28,
1/A25S/56:58
No text annotation
Not in a motif group
homologous
IL_8C3A_004
IL_76488.2
IL_7TOP_0051/A25S/31:38,
1/A25S/45:53
tSH-tHW-tHH-tHS
Not in a motif group
geometric
IL_5TBW_005
IL_35728.2
IL_7TOP_0061/A25S/82:89,
1/A25S/97:103
No text annotation
Not in a motif group
homologous
IL_8C3A_006
IL_88613.1
IL_7TOP_0071/A25S/123:124,
1/A25S/144:149
No text annotation
Not in a motif group
homologous
IL_8C3A_007
IL_19724.2
IL_7TOP_0081/A25S/125:127,
1/A25S/141:143
No text annotation
Not in a motif group
homologous
IL_8C3A_008
IL_95997.1
IL_7TOP_0091/A25S/163:165,
1/A25S/257:258
Single stack bend
Not in a motif group
geometric
IL_5TBW_009
IL_76488.2
IL_7TOP_0101/A25S/169:170,
1/A25S/248:253
No text annotation
Not in a motif group
homologous
IL_8C3A_010
IL_74684.1
IL_7TOP_0111/A25S/177:178,
1/A25S/238:241
No text annotation
Not in a motif group
homologous
IL_8C3A_012
IL_76488.2
IL_7TOP_0121/A25S/189:191,
1/A25S/204:205
No text annotation
Not in a motif group
homologous
IL_8C3A_013
IL_83039.14
IL_7TOP_0131/A25S/337:339,
1/A58S/25:26
No text annotation
Not in a motif group
homologous
IL_8C3A_014
IL_37497.3
IL_7TOP_0141/A25S/376:379,
1/A25S/390:403
No text annotation
Not in a motif group
homologous
IL_8C3A_015
IL_60992.6
IL_7TOP_0151/A25S/404:410,
1/A58S/13:19
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_5TBW_015
IL_66414.6
IL_7TOP_0161/A25S/429:431,
1/A25S/628:630
No text annotation
Not in a motif group
geometric
IL_5TBW_016
IL_51629.2
IL_7TOP_0181/A25S/512:513,
1/A25S/577:579
No text annotation
Not in a motif group
homologous
IL_8C3A_020
IL_37497.3
IL_7TOP_0191/A25S/517:525,
1/A25S/567:573
No text annotation
Not in a motif group
geometric
IL_5TBW_019
IL_23992.1
IL_7TOP_0201/A25S/531:538,
1/A25S/553:561
No text annotation
Not in a motif group
geometric
IL_5TBW_020
IL_07703.1
IL_7TOP_0211/A25S/668:670,
1/A25S/792:794
No text annotation
Not in a motif group
homologous
IL_8C3A_023
IL_95997.1
IL_7TOP_0221/A25S/680:684,
1/A25S/696:700
No text annotation
Not in a motif group
homologous
IL_8C3A_024
IL_74284.1
IL_7TOP_0231/A25S/725:728,
1/A25S/741:745
No text annotation
Not in a motif group
homologous
IL_8C3A_025
IL_07235.1
IL_7TOP_0241/A25S/752:753,
1/A25S/779:781
No text annotation
Not in a motif group
homologous
IL_8C3A_026
IL_37497.3
IL_7TOP_0251/A25S/755:756,
1/A25S/775:777
No text annotation
Not in a motif group
homologous
IL_8C3A_027
IL_83039.14
IL_7TOP_0261/A25S/758:763,
1/A25S/768:773
No text annotation
Not in a motif group
homologous
IL_8C3A_028
IL_19954.2
IL_7TOP_0271/A25S/803:805,
1/A25S/938:940
No text annotation
Not in a motif group
homologous
IL_8C3A_029
IL_95997.1
IL_7TOP_0281/A25S/805:809,
1/A25S/931:938
No text annotation
Not in a motif group
geometric
IL_5TBW_028
IL_17470.6
IL_7TOP_0291/A25S/833:834,
1/A25S/859:861
No text annotation
Not in a motif group
homologous
IL_8C3A_032
IL_00225.3
IL_7TOP_0301/A25S/834:838,
1/A25S/855:859
Triple sheared
Not in a motif group
geometric
IL_4WF9_024
IL_56467.8
IL_7TOP_0311/A25S/869:872,
1/A25S/888:890
No text annotation
Not in a motif group
homologous
IL_8C3A_034
IL_05564.2
IL_7TOP_0321/A25S/873:875,
1/A25S/886:887
No text annotation
Not in a motif group
homologous
IL_8C3A_035
IL_83039.14
IL_7TOP_0331/A25S/907:909,
1/A25S/919:923
No text annotation
Not in a motif group
homologous
IL_8C3A_036
IL_90991.6
IL_7TOP_0341/A25S/954:956,
1/A25S/965:967
No text annotation
Not in a motif group
homologous
IL_8C3A_037
IL_95997.1
IL_7TOP_0351/A25S/969:970,
1/A25S/1111:1113
No text annotation
Not in a motif group
homologous
IL_8C3A_038
IL_76488.2
IL_7TOP_0361/A25S/977:981,
1/A25S/1102:1104
No text annotation
Not in a motif group
geometric
IL_5TBW_036
IL_67474.4
IL_7TOP_0371/A25S/983:985,
1/A25S/1099:1100
No text annotation
Not in a motif group
homologous
IL_8C3A_040
IL_00225.3
IL_7TOP_0381/A25S/991:997,
1/A25S/1052:1058
No text annotation
Not in a motif group
homologous
IL_8C3A_041
IL_93830.3
IL_7TOP_0391/A25S/997:998,
1/A25S/1050:1052
Minor groove platform
Not in a motif group
geometric
IL_5TBW_039
IL_42622.2
IL_7TOP_0401/A25S/999:1004,
1/A25S/1046:1049
No text annotation
Not in a motif group
homologous
IL_8C3A_043
IL_02509.1
IL_7TOP_0411/A25S/1005:1009,
1/A25S/1041:1045
No text annotation
Not in a motif group
geometric
IL_4V88_422
IL_05145.2
IL_7TOP_0421/A25S/1009:1011,
1/A25S/1039:1041
No text annotation
Not in a motif group
homologous
IL_8C3A_045
IL_95997.1
IL_7TOP_0431/A25S/1013:1018,
1/A25S/1034:1037
Other IL
Not in a motif group
geometric
IL_5TBW_043
IL_71110.1
IL_7TOP_0441/A25S/1018:1020,
1/A25S/1033:1034
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_7TOP_0451/A25S/1069:1071,
1/A25S/1087:1089
No text annotation
Not in a motif group
homologous
IL_8C3A_047
IL_95997.1
IL_7TOP_0461/A25S/1074:1076,
1/A25S/1083:1084
No text annotation
Not in a motif group
homologous
IL_8C3A_048
IL_00225.3
IL_7TOP_0471/A25S/1120:1122,
1/A25S/1136:1138
No text annotation
Not in a motif group
homologous
IL_8C3A_049
IL_95997.1
IL_7TOP_0481/A25S/1167:1171,
1/A25S/1328:1332
No text annotation
Not in a motif group
homologous
IL_8C3A_051
IL_89002.2
IL_7TOP_0491/A25S/1173:1180,
1/A25S/1325:1326
No text annotation
Not in a motif group
homologous
IL_8C3A_052
IL_15861.7
IL_7TOP_0501/A25S/1180:1182,
1/A25S/1324:1325
Single bulged U
Not in a motif group
geometric
IL_5TBW_050
IL_83039.14
IL_7TOP_0511/A25S/1187:1194,
1/A25S/1314:1319
No text annotation
Not in a motif group
homologous
IL_8C3A_054
IL_27086.1
IL_7TOP_0521/A25S/1194:1205,
1/A25S/1299:1314
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_53762.1
IL_7TOP_0531/A25S/1207:1209,
1/A25S/1296:1297
No text annotation
Not in a motif group
homologous
IL_8C3A_056
IL_83039.14
IL_7TOP_0541/A25S/1218:1226,
1/A25S/1283:1287
No text annotation
Not in a motif group
homologous
IL_8C3A_057
IL_90538.4
IL_7TOP_0551/A25S/1234:1239,
1/A25S/1249:1254
No text annotation
Not in a motif group
IL_7TOP_0561/A25S/1262:1266,
1/A25S/1275:1277
No text annotation
Not in a motif group
homologous
IL_8C3A_059
IL_05564.2
IL_7TOP_0571/A25S/1376:1378,
1/A25S/1428:1431
No text annotation
Not in a motif group
homologous
IL_8C3A_061
IL_52767.2
IL_7TOP_0581/A25S/1385:1387,
1/A25S/1420:1421
No text annotation
Not in a motif group
homologous
IL_8C3A_062
IL_37497.3
IL_7TOP_0591/A25S/1388:1395,
1/A25S/1415:1419
No text annotation
Not in a motif group
homologous
IL_8C3A_063
IL_70923.2
IL_7TOP_0601/A25S/1398:1400,
1/A25S/1411:1412
Single bulged A
Not in a motif group
geometric
IL_5TBW_060
IL_37497.3
IL_7TOP_0611/A25S/1444:1450,
1/A25S/2354:2359
No text annotation
Not in a motif group
homologous
IL_8C3A_065
IL_76042.2
IL_7TOP_0621/A25S/1501:1505,
1/A25S/1513:1515
C-loop
Not in a motif group
geometric
IL_7RQB_051
IL_63596.6
IL_7TOP_0631/A25S/1532:1536,
1/A25S/1585:1590
No text annotation
Not in a motif group
homologous
IL_8C3A_067
IL_89002.2
IL_7TOP_0641/A25S/1618:1621,
1/A25S/1824:1826
No text annotation
Not in a motif group
homologous
IL_8C3A_070
IL_84698.1
IL_7TOP_0651/A25S/1623:1627,
1/A25S/1816:1822
No text annotation
Not in a motif group
IL_7TOP_0661/A25S/1627:1631,
1/A25S/1811:1816
No text annotation
Not in a motif group
geometric
IL_5TBW_066
IL_48431.1
IL_7TOP_0671/A25S/1645:1649,
1/A25S/1806:1810
No text annotation
Not in a motif group
homologous
IL_8C3A_073
IL_56467.8
IL_7TOP_0681/A25S/1661:1663,
1/A25S/1786:1788
No text annotation
Not in a motif group
homologous
IL_8C3A_074
IL_95997.1
IL_7TOP_0691/A25S/1669:1670,
1/A25S/1778:1780
No text annotation
Not in a motif group
homologous
IL_8C3A_075
IL_61258.12
IL_7TOP_0701/A25S/1670:1671,
1/A25S/1776:1778
Single stack bend
Not in a motif group
geometric
IL_5TBW_070
IL_76488.2
IL_7TOP_0711/A25S/1694:1698,
1/A25S/1747:1752
No text annotation
Not in a motif group
homologous
IL_8C3A_077
IL_69313.1
IL_7TOP_0721/A25S/1702:1707,
1/A25S/1737:1743
No text annotation
Not in a motif group
homologous
IL_8C3A_078
IL_39753.1
IL_7TOP_0731/A25S/1711:1717,
1/A25S/1727:1733
No text annotation
Not in a motif group
homologous
IL_8C3A_079
IL_60192.2
IL_7TOP_0741/A25S/1883:1889,
1/A25S/2346:2349
No text annotation
Not in a motif group
homologous
IL_8C3A_080
IL_49460.2
IL_7TOP_0751/A25S/1895:1897,
1/A25S/2338:2340
No text annotation
Not in a motif group
homologous
IL_8C3A_081
IL_54997.7
IL_7TOP_0761/A25S/1898:1901,
1/A25S/2336:2337
No text annotation
Not in a motif group
homologous
IL_8C3A_082
IL_50694.2
IL_7TOP_0771/A25S/1901:1906,
1/A25S/2333:2336
Intercalated tWH
Not in a motif group
geometric
IL_4V9F_062
IL_82842.2
IL_7TOP_0781/A25S/1918:1923,
1/A25S/1928:1934
No text annotation
Not in a motif group
homologous
IL_8C3A_084
IL_65969.2
IL_7TOP_0791/A25S/1940:1942,
1/A25S/2106:2108
No text annotation
Not in a motif group
homologous
IL_8C3A_085
IL_95997.1
IL_7TOP_0801/A25S/1947:1948,
1/A25S/2098:2101
No text annotation
Not in a motif group
homologous
IL_8C3A_086
IL_74125.1
IL_7TOP_0811/A25S/2128:2129,
1/A25S/2323:2325
No text annotation
Not in a motif group
homologous
IL_8C3A_087
IL_37497.3
IL_7TOP_0821/A25S/2156:2161,
1/A25S/2173:2180
No text annotation
Not in a motif group
homologous
IL_8C3A_088
IL_64509.1
IL_7TOP_0831/A25S/2196:2199,
1/A25S/2245:2246
No text annotation
Not in a motif group
homologous
IL_8C3A_089
IL_88739.1
IL_7TOP_0841/A25S/2200:2201,
1/A25S/2241:2244
No text annotation
Not in a motif group
homologous
IL_8C3A_090
IL_16396.2
IL_7TOP_0851/A25S/2204:2206,
1/A25S/2237:2238
Single bulged U
Not in a motif group
geometric
IL_5TBW_086
IL_83039.14
IL_7TOP_0861/A25S/2206:2210,
1/A25S/2235:2237
Major groove platform with extra pair
Not in a motif group
geometric
IL_5TBW_087
IL_63450.2
IL_7TOP_0871/A25S/2211:2217,
1/A25S/2228:2234
No text annotation
Not in a motif group
homologous
IL_8C3A_093
IL_36973.6
IL_7TOP_0881/A25S/2276:2277,
1/A25S/2307:2310
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_089
IL_59677.2
IL_7TOP_0891/A25S/2277:2288,
1/A25S/2304:2307
No text annotation
Not in a motif group
homologous
IL_8C3A_095
IL_81589.2
IL_7TOP_0901/A25S/2391:2394,
1/A25S/2986:2988
No text annotation
Not in a motif group
homologous
IL_8C3A_096
IL_63450.2
IL_7TOP_0911/A25S/2396:2398,
1/A25S/2981:2984
No text annotation
Not in a motif group
homologous
IL_8C3A_097
IL_54678.5
IL_7TOP_0921/A25S/2409:2411,
1/A25S/2811:2812
No text annotation
Not in a motif group
homologous
IL_8C3A_098
IL_83039.14
IL_7TOP_0931/A25S/2412:2413,
1/A25S/2807:2810
No text annotation
Not in a motif group
homologous
IL_8C3A_099
IL_42622.2
IL_7TOP_0941/A25S/2423:2425,
1/A25S/2604:2607
No text annotation
Not in a motif group
homologous
IL_8C3A_100
IL_38958.7
IL_7TOP_0951/A25S/2520:2526,
1/A25S/2584:2587
No text annotation
Not in a motif group
homologous
IL_8C3A_106
IL_74114.1
IL_7TOP_0961/A25S/2614:2615,
1/A25S/2625:2627
No text annotation
Not in a motif group
homologous
IL_8C3A_107
IL_69996.1
IL_7TOP_0971/A25S/2666:2668,
1/A25S/2686:2690
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_5TBW_099
IL_38958.7
IL_7TOP_0981/A25S/2718:2721,
1/A25S/2735:2738
No text annotation
Not in a motif group
homologous
IL_8C3A_109
IL_30621.3
IL_7TOP_0991/A25S/2770:2773,
1/A25S/2787:2788
No text annotation
Not in a motif group
homologous
IL_8C3A_110
IL_76488.2
IL_7TOP_1001/A25S/2823:2824,
1/A25S/2865:2867
Major groove platform
Not in a motif group
geometric
IL_5TBW_102
IL_27635.2
IL_7TOP_1011/A25S/2824:2826,
1/A25S/2863:2865
No text annotation
Not in a motif group
geometric
IL_5TBW_103
IL_95997.1
IL_7TOP_1021/A25S/2826:2828,
1/A25S/2862:2863
No text annotation
Not in a motif group
homologous
IL_8C3A_112
IL_76223.2
IL_7TOP_1031/A25S/2828:2830,
1/A25S/2858:2862
No text annotation
Not in a motif group
geometric
IL_5TBW_105
IL_92788.2
IL_7TOP_1041/A25S/2835:2839,
1/A25S/2849:2853
No text annotation
Not in a motif group
homologous
IL_8C3A_114
NA
IL_7TOP_1051/A25S/2876:2877,
1/A25S/2949:2951
No text annotation
Not in a motif group
homologous
IL_8C3A_115
IL_76223.2
IL_7TOP_1061/A25S/2879:2881,
1/A25S/2943:2947
No text annotation
Not in a motif group
homologous
IL_8C3A_116
IL_90933.2
IL_7TOP_1071/A25S/2881:2882,
1/A25S/2940:2943
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_109
IL_71530.2
IL_7TOP_1081/A25S/2889:2891,
1/A25S/2912:2914
No text annotation
Not in a motif group
geometric
IL_5TBW_110
IL_51629.2
IL_7TOP_1091/A25S/2891:2892,
1/A25S/2909:2912
Minor groove platform with intercalation
Not in a motif group
geometric
IL_5TBW_111
IL_95601.3
IL_7TOP_1101/A25S/2918:2920,
1/A25S/2926:2928
No text annotation
Not in a motif group
homologous
IL_8C3A_120
IL_95997.1
IL_7TOP_1111/A25S/2960:2961,
1/A25S/2970:2972
No text annotation
Not in a motif group
homologous
IL_8C3A_122
IL_37497.3
IL_7TOP_1121/A25S/3004:3007,
1/A25S/3139:3144
No text annotation
Not in a motif group
homologous
IL_8C3A_123
IL_09705.9
IL_7TOP_1131/A25S/3012:3014,
1/A25S/3040:3042
No text annotation
Not in a motif group
homologous
IL_8C3A_124
IL_95997.1
IL_7TOP_1141/A25S/3018:3025,
1/A25S/3030:3036
No text annotation
Not in a motif group
homologous
IL_8C3A_125
IL_04346.7
IL_7TOP_1151/A25S/3047:3051,
1/A25S/3091:3094
No text annotation
Not in a motif group
homologous
IL_8C3A_126
IL_37712.2
IL_7TOP_1161/A25S/3054:3059,
1/A25S/3084:3088
No text annotation
Not in a motif group
homologous
IL_8C3A_127
IL_17136.1
IL_7TOP_1171/A25S/3063:3064,
1/A25S/3077:3080
No text annotation
Not in a motif group
homologous
IL_8C3A_128
IL_71530.2
IL_7TOP_1181/A25S/3103:3107,
1/A25S/3127:3131
No text annotation
Not in a motif group
homologous
IL_8C3A_129
IL_89002.2
IL_7TOP_1191/A25S/3164:3166,
1/A25S/3284:3286
No text annotation
Not in a motif group
homologous
IL_8C3A_130
IL_95997.1
IL_7TOP_1201/A25S/3168:3170,
1/A25S/3280:3282
No text annotation
Not in a motif group
geometric
IL_5B2P_001
IL_95997.1
IL_7TOP_1211/A25S/3177:3179,
1/A25S/3210:3211
Single bulged A
Not in a motif group
geometric
IL_5TBW_123
IL_37497.3
IL_7TOP_1221/A25S/3179:3188,
1/A25S/3204:3210
No text annotation
Not in a motif group
geometric
IL_5TBW_124
IL_15174.1
IL_7TOP_1231/A25S/3193:3194,
1/A25S/3197:3199
Single bulged U
Not in a motif group
geometric
IL_5TBW_125
IL_83039.14
IL_7TOP_1241/A25S/3225:3229,
1/A25S/3258:3260
No text annotation
Not in a motif group
homologous
IL_8C3A_133
IL_19389.6
IL_7TOP_1251/A25S/3233:3235,
1/A25S/3252:3254
No text annotation
Not in a motif group
geometric
IL_4M4O_002
IL_95997.1
IL_7TOP_1261/A25S/3235:3238,
1/A25S/3249:3252
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4UYK_003
IL_30621.3
IL_7TOP_1271/A25S/3300:3303,
1/A25S/3311:3314
No text annotation
Not in a motif group
homologous
IL_8C3A_135
IL_30621.3
IL_7TOP_1281/A25S/3318:3320,
1/A25S/3387:3388
Single bulged U
Not in a motif group
geometric
IL_5TBW_130
IL_83039.14
IL_7TOP_1291/A25S/3324:3325,
1/A25S/3381:3383
No text annotation
Not in a motif group
homologous
IL_8C3A_137
IL_83039.14
IL_7TOP_1301/A25S/3328:3330,
1/A25S/3373:3378
No text annotation
Not in a motif group
homologous
IL_8C3A_138
IL_90933.2
IL_7TOP_1311/A25S/3332:3337,
1/A25S/3367:3371
No text annotation
Not in a motif group
homologous
IL_8C3A_139
IL_83162.5
IL_7TOP_1321/A25S/3340:3342,
1/A25S/3363:3364
Single bulged U
Not in a motif group
geometric
IL_5TBW_134
IL_83039.14
IL_7TOP_1331/A25S/3342:3345,
1/A25S/3360:3363
No text annotation
Not in a motif group
homologous
IL_8C3A_141
IL_09705.9
IL_7TOP_1341/A25S/3349:3350,
1/A25S/3353:3356
No text annotation
Not in a motif group
homologous
IL_8C3A_142
IL_59677.2
IL_7TOP_1351/A58S/44:64,
1/A58S/96:100
No text annotation
Not in a motif group
geometric
IL_5TBW_144
IL_44998.1
IL_7TOP_1361/A58S/64:66,
1/A58S/93:96
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5TBW_145
IL_82068.2
IL_7TOP_1371/A58S/68:69,
1/A58S/89:91
Single bulged U
Not in a motif group
geometric
IL_5TBW_146
IL_83039.14
IL_7TOP_1381/A5S/15:16,
1/A5S/63:65
Single bulged A
Not in a motif group
homologous
IL_5TBW_372
IL_37497.3
IL_7TOP_1391/A5S/21:27,
1/A5S/53:58
No text annotation
Not in a motif group
homologous
IL_5TBW_373
IL_10207.2
IL_7TOP_1401/A5S/28:29,
1/A5S/49:52
Minor groove platform
Not in a motif group
homologous
IL_5TBW_374
IL_63797.2
IL_7TOP_1411/A5S/29:30,
1/A5S/47:49
Single stack bend
Not in a motif group
geometric
IL_5TBW_375
IL_76488.2
IL_7TOP_1421/A5S/32:36,
1/A5S/41:45
Symmetric double minor groove platform
Not in a motif group
homologous
IL_5TBW_376
IL_58103.6
IL_7TOP_1431/A5S/72:80,
1/A5S/100:106
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_377
IL_04346.7
IL_7TOP_1441/A5S/84:87,
1/A5S/94:96
No text annotation
Not in a motif group
homologous
IL_5TBW_378
IL_95997.1

Problematic loops

#loop idProblemSequence
IL_7TOP_017No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7TOP_0011/A25S/113:123,
1/A25S/149:158,
1/A25S/263:267
No text annotation
Not in a motif group
J3_7TOP_0021/A25S/369:376,
1/A25S/403:404,
1/A58S/19:20
No text annotation
Not in a motif group
J3_7TOP_0031/A25S/502:503,
1/A25S/588:597,
1/A25S/606:611
No text annotation
Not in a motif group
J3_7TOP_0041/A25S/814:820,
1/A25S/905:907,
1/A25S/923:926
No text annotation
Not in a motif group
homologous
J3_8C3A_003
NA
J3_7TOP_0051/A25S/828:831,
1/A25S/863:867,
1/A25S/892:897
No text annotation
Not in a motif group
J3_7TOP_0061/A25S/986:987,
1/A25S/1062:1066,
1/A25S/1092:1098
No text annotation
Not in a motif group
J3_7TOP_0071/A25S/1230:1233,
1/A25S/1255:1262,
1/A25S/1277:1279
No text annotation
Not in a motif group
J3_7TOP_0081/A25S/1479:1485,
1/A25S/1857:1859,
1/A25S/1871:1874
No text annotation
Not in a motif group
homologous
J3_8C3A_006
NA
J3_7TOP_0091/A25S/1488:1491,
1/A25S/1837:1843,
1/A25S/1852:1854
No text annotation
Not in a motif group
homologous
J3_8C3A_007
NA
J3_7TOP_0101/A25S/1526:1531,
1/A25S/1591:1595,
1/A25S/1612:1613
No text annotation
Not in a motif group
J3_7TOP_0111/A25S/1631:1632,
1/A25S/1641:1645,
1/A25S/1810:1811
No text annotation
Not in a motif group
J3_7TOP_0121/A25S/2432:2435,
1/A25S/2512:2517,
1/A25S/2590:2597
No text annotation
Not in a motif group
homologous
J3_8C3A_008
NA
J3_7TOP_0131/A25S/2664:2666,
1/A25S/2690:2692,
1/A25S/2701:2706
No text annotation
Not in a motif group
homologous
J3_8C3A_010
NA
J3_7TOP_0141/A25S/2886:2889,
1/A25S/2914:2916,
1/A25S/2930:2936
No text annotation
Not in a motif group
homologous
J3_8C3A_011
NA
J3_7TOP_0151/A25S/3298:3300,
1/A25S/3314:3318,
1/A25S/3388:3390
No text annotation
Not in a motif group
J3_7TOP_0161/A5S/9:14,
1/A5S/66:67,
1/A5S/111:112
No text annotation
Not in a motif group
homologous
J3_5TBW_045
NA

Problematic loops

No problematic loops


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