6GZ4 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6GZ4_001 | 1/A2/37:44 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.2 | |
| HL_6GZ4_002 | 1/A2/68:73 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_6GZ4_003 | 1/A2/89:95 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_6GZ4_004 | 1/A2/131:137 | No text annotation Not in a motif group | ||
| HL_6GZ4_005 | 1/A2/199:208 | No text annotation Not in a motif group | ||
| HL_6GZ4_006 | 1/A2/218:222 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_6GZ4_007 | 1/A2/283:292 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_6GZ4_008 | 1/A2/308:317 | No text annotation Not in a motif group | homologous HL_8C3A_009 HL_12078.2 | |
| HL_6GZ4_009 | 1/A2/362:367 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_6GZ4_010 | 1/A2/387:392 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.1 | |
| HL_6GZ4_011 | 1/A2/517:630 | No text annotation Not in a motif group | ||
| HL_6GZ4_012 | 1/A2/750:891 | No text annotation Not in a motif group | ||
| HL_6GZ4_013 | 1/A2/1088:1147 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_75407.1 | |
| HL_6GZ4_014 | 1/A2/1161:1166 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6GZ4_015 | 1/A2/1300:1309 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_89380.2 | |
| HL_6GZ4_016 | 1/A2/1346:1357 | No text annotation Not in a motif group | ||
| HL_6GZ4_017 | 1/A2/1372:1377 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_6GZ4_018 | 1/A2/1388:1395 | No text annotation Not in a motif group | ||
| HL_6GZ4_019 | 1/A2/1417:1432 | No text annotation Not in a motif group | ||
| HL_6GZ4_020 | 1/A2/1461:1468 | No text annotation Not in a motif group | geometric HL_6VMY_004 HL_91058.1 | |
| HL_6GZ4_021 | 1/A2/1543:1548 | No text annotation Not in a motif group | homologous HL_8C3A_019 HL_42097.1 | |
| HL_6GZ4_022 | 1/A2/1575:1584 | No text annotation Not in a motif group | homologous HL_8C3A_020 HL_39334.6 | |
| HL_6GZ4_023 | 1/A2/1609:1617 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_6GZ4_024 | 1/A2/1657:1662 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_6GZ4_025 | 1/A2/1745:1751 | GNRA Not in a motif group | homologous HL_5TBW_023 HL_42097.1 | |
| HL_6GZ4_026 | 1/A2/1798:1805 | No text annotation Not in a motif group | homologous HL_5TBW_024 HL_71554.2 | |
| HL_6GZ4_027 | 1/A2/1845:1851 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_42097.1 | |
| HL_6GZ4_028 | 1/A2/1867:1874 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_6GZ4_029 | 1/A2/1959:1969 | No text annotation Not in a motif group | homologous HL_5TBW_027 HL_07145.1 | |
| HL_6GZ4_030 | 1/A2/1986:1995 | No text annotation Not in a motif group | geometric HL_5TBW_028 HL_09136.1 | |
| HL_6GZ4_031 | 1/A2/2066:2250 | No text annotation Not in a motif group | ||
| HL_6GZ4_032 | 1/A2/2296:2301 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_6GZ4_033 | 1/A2/2355:2363 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_89380.2 | |
| HL_6GZ4_034 | 1/A2/2399:2405 | No text annotation Not in a motif group | geometric HL_4TUW_002 HL_65572.2 | |
| HL_6GZ4_035 | 1/A2/2437:2442 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_6GZ4_036 | 1/A2/2466:2470 | No text annotation Not in a motif group | ||
| HL_6GZ4_037 | 1/A2/2502:2511 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_6GZ4_038 | 1/A2/2540:2545 | GNRA Not in a motif group | geometric HL_5UZ6_001 HL_42097.1 | |
| HL_6GZ4_039 | 1/A2/2557:2562 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_42097.1 | |
| HL_6GZ4_040 | 1/A2/2603:2611 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_60812.1 | |
| HL_6GZ4_041 | 1/A2/2643:2649 | No text annotation Not in a motif group | homologous HL_8C3A_038 HL_86373.2 | |
| HL_6GZ4_042 | 1/A2/2683:2691 | No text annotation Not in a motif group | ||
| HL_6GZ4_043 | 1/A2/2717:2721 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.1 | |
| HL_6GZ4_044 | 1/A2/2771:2778 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.2 | |
| HL_6GZ4_045 | 1/A2/2789:2795 | No text annotation Not in a motif group | homologous HL_8C3A_042 HL_42097.1 | |
| HL_6GZ4_046 | 1/A2/2851:2856 | UNCG Not in a motif group | geometric HL_4PMI_004 HL_03562.2 | |
| HL_6GZ4_047 | 1/A2/3585:3589 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_6GZ4_048 | 1/A2/3610:3620 | No text annotation Not in a motif group | homologous HL_8C3A_046 HL_43613.5 | |
| HL_6GZ4_049 | 1/A2/3639:3645 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_6GZ4_050 | 1/A2/3695:3700 | No text annotation Not in a motif group | homologous HL_8C3A_048 HL_42097.1 | |
| HL_6GZ4_051 | 1/A2/3728:3738 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_6GZ4_052 | 1/A2/3767:3775 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.1 | |
| HL_6GZ4_053 | 1/A2/3844:3853 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_6GZ4_054 | 1/A2/4072:4076 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_6GZ4_055 | 1/A2/4104:4111 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_6GZ4_056 | 1/A2/4155:4163 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_53171.2 | |
| HL_6GZ4_057 | 1/A2/4172:4184 | No text annotation Not in a motif group | homologous HL_8C3A_056 HL_19870.6 | |
| HL_6GZ4_058 | 1/A2/4212:4220 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_6GZ4_059 | 1/A2/4232:4239 | No text annotation Not in a motif group | homologous HL_8C3A_058 HL_12078.2 | |
| HL_6GZ4_060 | 1/A2/4263:4271 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_6GZ4_061 | 1/A2/4283:4288 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.1 | |
| HL_6GZ4_062 | 1/A2/4314:4324 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_6GZ4_063 | 1/A2/4379:4387 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_6GZ4_064 | 1/A2/4436:4443 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_6GZ4_065 | 1/A2/4459:4465 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_6GZ4_066 | 1/A2/4502:4507 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.1 | |
| HL_6GZ4_067 | 1/A2/4565:4570 | GNRA Not in a motif group | homologous HL_5TBW_065 HL_42097.1 | |
| HL_6GZ4_068 | 1/A2/4608:4613 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_6GZ4_069 | 1/A2/4650:4664 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_6GZ4_070 | 1/A2/4865:4872 | No text annotation Not in a motif group | ||
| HL_6GZ4_071 | 1/A2/4933:4941 | No text annotation Not in a motif group | geometric HL_5TBW_070 HL_27930.1 | |
| HL_6GZ4_072 | 1/A2/4979:4986 | No text annotation Not in a motif group | geometric HL_2Y8Y_001 HL_20062.1 | |
| HL_6GZ4_073 | 1/A3/47:56 | No text annotation Not in a motif group | geometric HL_7RQB_001 HL_99167.1 | |
| HL_6GZ4_074 | 1/A3/68:90 | No text annotation Not in a motif group | ||
| HL_6GZ4_075 | 1/A3/107:112 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_6GZ4_076 | 1/A3/120:130 | No text annotation Not in a motif group | ||
| HL_6GZ4_077 | 1/A4/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_87939.1 | |
| HL_6GZ4_078 | 1/A4/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_6GZ4_079 | 1/B1/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6GZ4_080 | 1/B1/69:80 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_6GZ4_081 | 1/B1/156:162 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_6GZ4_082 | 1/B1/197:202 | GNRA Not in a motif group | geometric HL_4V9F_009 HL_42097.1 | |
| HL_6GZ4_083 | 1/B1/239:282 | No text annotation Not in a motif group | ||
| HL_6GZ4_084 | 1/B1/288:295 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_6GZ4_085 | 1/B1/322:329 | No text annotation Not in a motif group | ||
| HL_6GZ4_086 | 1/B1/377:387 | No text annotation Not in a motif group | ||
| HL_6GZ4_087 | 1/B1/416:421 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6GZ4_088 | 1/B1/441:452 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6GZ4_089 | 1/B1/462:467 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_6GZ4_090 | 1/B1/498:504 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6GZ4_091 | 1/B1/539:544 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6GZ4_092 | 1/B1/569:581 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 | |
| HL_6GZ4_093 | 1/B1/618:623 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_6GZ4_094 | 1/B1/692:738 | No text annotation Not in a motif group | ||
| HL_6GZ4_095 | 1/B1/751:792 | No text annotation Not in a motif group | ||
| HL_6GZ4_096 | 1/B1/820:828 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_6GZ4_097 | 1/B1/833:841 | No text annotation Not in a motif group | ||
| HL_6GZ4_098 | 1/B1/885:901 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_6GZ4_099 | 1/B1/957:966 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_6GZ4_100 | 1/B1/994:999 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6GZ4_101 | 1/B1/1054:1064 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_6GZ4_102 | 1/B1/1112:1121 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6GZ4_103 | 1/B1/1141:1146 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_6GZ4_104 | 1/B1/1178:1183 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_6GZ4_105 | 1/B1/1245:1254 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_6GZ4_106 | 1/B1/1295:1304 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_6GZ4_107 | 1/B1/1353:1358 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_6GZ4_108 | 1/B1/1366:1373 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_6GZ4_109 | 1/B1/1415:1422 | No text annotation Not in a motif group | ||
| HL_6GZ4_110 | 1/B1/1460:1466 | GNRA Not in a motif group | geometric HL_3NVI_002 HL_42097.1 | |
| HL_6GZ4_111 | 1/B1/1565:1570 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_6GZ4_112 | 1/B1/1614:1625 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_6GZ4_113 | 1/B1/1658:1666 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_6GZ4_114 | 1/B1/1756:1776 | No text annotation Not in a motif group | ||
| HL_6GZ4_115 | 1/B1/1847:1852 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 | |
| HL_6GZ4_116 | 1/Bv/12:23 | No text annotation Not in a motif group | ||
| HL_6GZ4_117 | 1/Bv/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
| HL_6GZ4_118 | 1/Bv/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4YYE_003 HL_22280.1 | |
| HL_6GZ4_119 | 1/Bw/13:22 | No text annotation Not in a motif group | homologous HL_6PMO_003 NA | |
| HL_6GZ4_120 | 1/Bw/31:39 | No text annotation Not in a motif group | homologous HL_6CFJ_107 NA | |
| HL_6GZ4_121 | 1/Bw/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_3WFS_003 HL_71309.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6GZ4_001 | 1/A2/6:7, 1/A3/149:151 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_6GZ4_002 | 1/A2/11:14, 1/A3/143:145 | No text annotation Not in a motif group | geometric IL_5TBW_378 IL_95997.1 | |
| IL_6GZ4_003 | 1/A2/16:18, 1/A3/139:141 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_51629.2 | |
| IL_6GZ4_004 | 1/A2/26:27, 1/A2/55:57 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_6GZ4_005 | 1/A2/30:37, 1/A2/44:52 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
| IL_6GZ4_006 | 1/A2/81:88, 1/A2/96:102 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_6GZ4_007 | 1/A2/118:124, 1/A2/143:151 | No text annotation Not in a motif group | ||
| IL_6GZ4_008 | 1/A2/127:129, 1/A2/139:140 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6GZ4_009 | 1/A2/129:131, 1/A2/137:139 | No text annotation Not in a motif group | ||
| IL_6GZ4_010 | 1/A2/158:160, 1/A2/267:269 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_6GZ4_011 | 1/A2/161:164, 1/A2/263:266 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_30621.2 | |
| IL_6GZ4_012 | 1/A2/165:167, 1/A2/261:262 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6GZ4_013 | 1/A2/167:171, 1/A2/257:261 | No text annotation Not in a motif group | ||
| IL_6GZ4_014 | 1/A2/171:173, 1/A2/256:257 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_6GZ4_015 | 1/A2/173:175, 1/A2/253:256 | No text annotation Not in a motif group | ||
| IL_6GZ4_016 | 1/A2/175:180, 1/A2/251:253 | No text annotation Not in a motif group | ||
| IL_6GZ4_017 | 1/A2/180:185, 1/A2/248:251 | No text annotation Not in a motif group | ||
| IL_6GZ4_018 | 1/A2/186:188, 1/A2/246:247 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6GZ4_019 | 1/A2/189:191, 1/A2/243:245 | No text annotation Not in a motif group | ||
| IL_6GZ4_020 | 1/A2/198:199, 1/A2/208:210 | Single stack bend Not in a motif group | geometric IL_4V9F_081 IL_76488.2 | |
| IL_6GZ4_021 | 1/A2/342:344, 1/A3/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.2 | |
| IL_6GZ4_022 | 1/A2/409:415, 1/A3/13:19 | No text annotation Not in a motif group | homologous IL_8C3A_016 IL_66414.6 | |
| IL_6GZ4_023 | 1/A2/437:440, 1/A2/1283:1287 | No text annotation Not in a motif group | geometric IL_6AZ4_001 IL_69145.1 | |
| IL_6GZ4_024 | 1/A2/450:453, 1/A2/689:692 | No text annotation Not in a motif group | ||
| IL_6GZ4_025 | 1/A2/454:456, 1/A2/686:688 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_95997.1 | |
| IL_6GZ4_026 | 1/A2/456:460, 1/A2/682:686 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_6GZ4_027 | 1/A2/461:466, 1/A2/676:681 | No text annotation Not in a motif group | ||
| IL_6GZ4_028 | 1/A2/466:468, 1/A2/675:676 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_76488.2 | |
| IL_6GZ4_029 | 1/A2/468:469, 1/A2/673:675 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_6GZ4_030 | 1/A2/469:470, 1/A2/671:673 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6GZ4_031 | 1/A2/470:472, 1/A2/670:671 | Not an internal loop Not in a motif group | geometric IL_4UYK_002 IL_76488.2 | |
| IL_6GZ4_032 | 1/A2/472:475, 1/A2/667:670 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_67743.1 | |
| IL_6GZ4_033 | 1/A2/475:481, 1/A2/663:667 | No text annotation Not in a motif group | ||
| IL_6GZ4_034 | 1/A2/481:484, 1/A2/658:663 | No text annotation Not in a motif group | ||
| IL_6GZ4_035 | 1/A2/484:485, 1/A2/656:658 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_6GZ4_036 | 1/A2/486:489, 1/A2/653:655 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.1 | |
| IL_6GZ4_037 | 1/A2/489:490, 1/A2/651:653 | Single stack bend Not in a motif group | geometric IL_4V9F_081 IL_76488.2 | |
| IL_6GZ4_038 | 1/A2/491:493, 1/A2/649:650 | No text annotation Not in a motif group | ||
| IL_6GZ4_039 | 1/A2/493:498, 1/A2/648:649 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_6GZ4_040 | 1/A2/502:504, 1/A2/643:644 | Single bulged A Not in a motif group | geometric IL_6WPI_001 IL_37497.2 | |
| IL_6GZ4_041 | 1/A2/506:509, 1/A2/640:641 | Multiple bulged bases Not in a motif group | geometric IL_4LFB_007 IL_16396.2 | |
| IL_6GZ4_042 | 1/A2/514:515, 1/A2/632:635 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6GZ4_043 | 1/A2/699:700, 1/A2/1270:1272 | Single bulged G Not in a motif group | geometric IL_4LFB_036 IL_00225.2 | |
| IL_6GZ4_044 | 1/A2/713:715, 1/A2/929:933 | No text annotation Not in a motif group | ||
| IL_6GZ4_045 | 1/A2/717:726, 1/A2/915:927 | No text annotation Not in a motif group | ||
| IL_6GZ4_046 | 1/A2/727:729, 1/A2/913:914 | No text annotation Not in a motif group | ||
| IL_6GZ4_047 | 1/A2/731:733, 1/A2/909:911 | No text annotation Not in a motif group | geometric IL_4YHW_001 IL_95997.1 | |
| IL_6GZ4_048 | 1/A2/734:736, 1/A2/907:908 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_6GZ4_049 | 1/A2/736:744, 1/A2/897:907 | No text annotation Not in a motif group | ||
| IL_6GZ4_050 | 1/A2/1059:1063, 1/A2/1202:1218 | No text annotation Not in a motif group | ||
| IL_6GZ4_051 | 1/A2/1065:1067, 1/A2/1195:1200 | No text annotation Not in a motif group | ||
| IL_6GZ4_052 | 1/A2/1068:1072, 1/A2/1189:1194 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_6GZ4_053 | 1/A2/1072:1074, 1/A2/1188:1189 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6GZ4_054 | 1/A2/1075:1079, 1/A2/1182:1187 | No text annotation Not in a motif group | ||
| IL_6GZ4_055 | 1/A2/1156:1158, 1/A2/1169:1171 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_6GZ4_056 | 1/A2/1340:1343, 1/A2/1362:1365 | No text annotation Not in a motif group | ||
| IL_6GZ4_057 | 1/A2/1343:1344, 1/A2/1359:1362 | Multiple bulged bases Not in a motif group | geometric IL_6JXM_001 IL_69996.1 | |
| IL_6GZ4_058 | 1/A2/1408:1412, 1/A2/1437:1442 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_6GZ4_059 | 1/A2/1413:1417, 1/A2/1432:1436 | Triple sheared Not in a motif group | geometric IL_4WFL_001 IL_56467.8 | |
| IL_6GZ4_060 | 1/A2/1449:1450, 1/A2/1478:1480 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.2 | |
| IL_6GZ4_061 | 1/A2/1456:1458, 1/A2/1471:1472 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_76488.2 | |
| IL_6GZ4_062 | 1/A2/1502:1504, 1/A2/1637:1639 | No text annotation Not in a motif group | homologous IL_8C3A_029 IL_95997.1 | |
| IL_6GZ4_063 | 1/A2/1504:1508, 1/A2/1630:1637 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.6 | |
| IL_6GZ4_064 | 1/A2/1532:1533, 1/A2/1558:1560 | No text annotation Not in a motif group | homologous IL_8C3A_032 IL_00225.2 | |
| IL_6GZ4_065 | 1/A2/1533:1537, 1/A2/1554:1558 | Triple sheared Not in a motif group | geometric IL_4WF9_024 IL_56467.8 | |
| IL_6GZ4_066 | 1/A2/1568:1571, 1/A2/1587:1589 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_6GZ4_067 | 1/A2/1572:1574, 1/A2/1585:1586 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_6GZ4_068 | 1/A2/1606:1608, 1/A2/1618:1622 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_6GZ4_069 | 1/A2/1653:1655, 1/A2/1664:1666 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_6GZ4_070 | 1/A2/1668:1670, 1/A2/1829:1832 | No text annotation Not in a motif group | ||
| IL_6GZ4_071 | 1/A2/1676:1703, 1/A2/1822:1823 | No text annotation Not in a motif group | ||
| IL_6GZ4_072 | 1/A2/1705:1707, 1/A2/1819:1820 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_6GZ4_073 | 1/A2/1714:1719, 1/A2/1774:1779 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_6GZ4_074 | 1/A2/1719:1720, 1/A2/1772:1774 | No text annotation Not in a motif group | homologous IL_8C3A_042 IL_42622.2 | |
| IL_6GZ4_075 | 1/A2/1721:1726, 1/A2/1768:1771 | No text annotation Not in a motif group | homologous IL_8C3A_043 IL_02509.1 | |
| IL_6GZ4_076 | 1/A2/1728:1731, 1/A2/1763:1766 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
| IL_6GZ4_077 | 1/A2/1731:1733, 1/A2/1761:1763 | No text annotation Not in a motif group | homologous IL_8C3A_045 IL_95997.1 | |
| IL_6GZ4_078 | 1/A2/1735:1738, 1/A2/1757:1759 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_6GZ4_079 | 1/A2/1738:1740, 1/A2/1756:1757 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6GZ4_080 | 1/A2/1742:1745, 1/A2/1751:1754 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_100 IL_30621.2 | |
| IL_6GZ4_081 | 1/A2/1796:1798, 1/A2/1805:1806 | Single bulged G Not in a motif group | geometric IL_4V88_442 IL_00225.2 | |
| IL_6GZ4_082 | 1/A2/1839:1841, 1/A2/1855:1857 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_6GZ4_083 | 1/A2/1886:1890, 1/A2/2048:2052 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_6GZ4_084 | 1/A2/1892:1899, 1/A2/2045:2046 | No text annotation Not in a motif group | homologous IL_8C3A_052 IL_15861.7 | |
| IL_6GZ4_085 | 1/A2/1899:1901, 1/A2/2044:2045 | No text annotation Not in a motif group | ||
| IL_6GZ4_086 | 1/A2/1901:1903, 1/A2/2043:2044 | No text annotation Not in a motif group | ||
| IL_6GZ4_087 | 1/A2/1907:1914, 1/A2/2034:2039 | No text annotation Not in a motif group | homologous IL_8C3A_054 IL_27086.1 | |
| IL_6GZ4_088 | 1/A2/1914:1925, 1/A2/2019:2034 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_6GZ4_089 | 1/A2/1927:1929, 1/A2/2016:2017 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.13 | |
| IL_6GZ4_090 | 1/A2/1938:1946, 1/A2/2003:2007 | No text annotation Not in a motif group | ||
| IL_6GZ4_091 | 1/A2/1954:1959, 1/A2/1969:1974 | No text annotation Not in a motif group | ||
| IL_6GZ4_092 | 1/A2/1982:1986, 1/A2/1995:1997 | No text annotation Not in a motif group | homologous IL_8C3A_059 IL_05564.2 | |
| IL_6GZ4_093 | 1/A2/2064:2066, 1/A2/2250:2252 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_51629.2 | |
| IL_6GZ4_094 | 1/A2/2269:2271, 1/A2/2321:2324 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_6GZ4_095 | 1/A2/2278:2280, 1/A2/2313:2314 | Single bulged A Not in a motif group | geometric IL_3OXE_001 IL_37497.2 | |
| IL_6GZ4_096 | 1/A2/2280:2282, 1/A2/2312:2313 | Single stack bend Not in a motif group | geometric IL_7RQB_005 IL_76488.2 | |
| IL_6GZ4_097 | 1/A2/2282:2288, 1/A2/2308:2312 | No text annotation Not in a motif group | ||
| IL_6GZ4_098 | 1/A2/2291:2293, 1/A2/2304:2305 | Single bulged A Not in a motif group | geometric IL_5WWT_001 IL_37497.2 | |
| IL_6GZ4_099 | 1/A2/2337:2343, 1/A2/3829:3834 | No text annotation Not in a motif group | homologous IL_8C3A_065 IL_76042.2 | |
| IL_6GZ4_100 | 1/A2/2385:2388, 1/A2/2762:2763 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7A0S_046 IL_50694.2 | |
| IL_6GZ4_101 | 1/A2/2394:2399, 1/A2/2405:2408 | No text annotation Not in a motif group | ||
| IL_6GZ4_102 | 1/A2/2425:2429, 1/A2/2488:2493 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_6GZ4_103 | 1/A2/2456:2458, 1/A2/2478:2479 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_6GZ4_104 | 1/A2/2521:2526, 1/A2/2751:2753 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_6GZ4_105 | 1/A2/2528:2529, 1/A2/2747:2749 | Single bulged U Not in a motif group | geometric IL_2R8S_004 IL_83039.13 | |
| IL_6GZ4_106 | 1/A2/2568:2572, 1/A2/2731:2735 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.8 | |
| IL_6GZ4_107 | 1/A2/2592:2593, 1/A2/2703:2705 | Single bulged A Not in a motif group | geometric IL_7A0S_012 IL_37497.2 | |
| IL_6GZ4_108 | 1/A2/2593:2594, 1/A2/2701:2703 | No text annotation Not in a motif group | homologous IL_8C3A_076 IL_76488.2 | |
| IL_6GZ4_109 | 1/A2/2625:2627, 1/A2/2664:2667 | Decoding loop related Not in a motif group | geometric IL_2O3X_003 IL_82842.2 | |
| IL_6GZ4_110 | 1/A2/2630:2632, 1/A2/2660:2661 | Single bulged G Not in a motif group | geometric IL_2IZN_001 IL_00225.2 | |
| IL_6GZ4_111 | 1/A2/2635:2641, 1/A2/2651:2657 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_6GZ4_112 | 1/A2/2811:2817, 1/A2/3821:3824 | No text annotation Not in a motif group | homologous IL_8C3A_080 IL_49460.2 | |
| IL_6GZ4_113 | 1/A2/2823:2825, 1/A2/3813:3815 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_6GZ4_114 | 1/A2/2826:2829, 1/A2/3811:3812 | No text annotation Not in a motif group | homologous IL_8C3A_082 IL_50694.2 | |
| IL_6GZ4_115 | 1/A2/2829:2834, 1/A2/3808:3811 | Intercalated tWH Not in a motif group | geometric IL_5TBW_077 IL_82842.2 | |
| IL_6GZ4_116 | 1/A2/2846:2851, 1/A2/2856:2862 | No text annotation Not in a motif group | homologous IL_8C3A_084 IL_65969.2 | |
| IL_6GZ4_117 | 1/A2/2868:2870, 1/A2/3581:3583 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_6GZ4_118 | 1/A2/2875:2876, 1/A2/3573:3576 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_6GZ4_119 | 1/A2/2879:2881, 1/A2/3569:3570 | No text annotation Not in a motif group | ||
| IL_6GZ4_120 | 1/A2/3603:3604, 1/A2/3798:3800 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_6GZ4_121 | 1/A2/3631:3636, 1/A2/3648:3655 | No text annotation Not in a motif group | homologous IL_8C3A_088 IL_64509.1 | |
| IL_6GZ4_122 | 1/A2/3671:3674, 1/A2/3720:3721 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_6GZ4_123 | 1/A2/3675:3676, 1/A2/3716:3719 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_6GZ4_124 | 1/A2/3679:3685, 1/A2/3710:3713 | No text annotation Not in a motif group | ||
| IL_6GZ4_125 | 1/A2/3686:3692, 1/A2/3703:3709 | No text annotation Not in a motif group | homologous IL_8C3A_093 IL_36973.6 | |
| IL_6GZ4_126 | 1/A2/3725:3726, 1/A2/3740:3742 | Single stack bend Not in a motif group | geometric IL_4WF9_007 IL_76488.2 | |
| IL_6GZ4_127 | 1/A2/3751:3752, 1/A2/3782:3785 | No text annotation Not in a motif group | homologous IL_8C3A_094 IL_59677.2 | |
| IL_6GZ4_128 | 1/A2/3752:3763, 1/A2/3779:3782 | No text annotation Not in a motif group | geometric IL_5TBW_090 IL_81589.2 | |
| IL_6GZ4_129 | 1/A2/3866:3869, 1/A2/4525:4527 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.2 | |
| IL_6GZ4_130 | 1/A2/3871:3873, 1/A2/4520:4523 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_6GZ4_131 | 1/A2/3884:3886, 1/A2/4350:4351 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.13 | |
| IL_6GZ4_132 | 1/A2/3887:3888, 1/A2/4346:4349 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_6GZ4_133 | 1/A2/3898:3900, 1/A2/4143:4146 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_6GZ4_134 | 1/A2/3919:3920, 1/A2/4033:4035 | No text annotation Not in a motif group | ||
| IL_6GZ4_135 | 1/A2/3921:3923, 1/A2/4030:4032 | No text annotation Not in a motif group | geometric IL_7A0S_026 IL_51629.2 | |
| IL_6GZ4_136 | 1/A2/3925:3937, 1/A2/4025:4028 | No text annotation Not in a motif group | ||
| IL_6GZ4_137 | 1/A2/3941:3944, 1/A2/4008:4021 | No text annotation Not in a motif group | geometric IL_3U4M_003 IL_75283.2 | |
| IL_6GZ4_138 | 1/A2/4052:4058, 1/A2/4123:4126 | No text annotation Not in a motif group | homologous IL_8C3A_106 IL_74114.1 | |
| IL_6GZ4_139 | 1/A2/4064:4067, 1/A2/4082:4083 | No text annotation Not in a motif group | ||
| IL_6GZ4_140 | 1/A2/4067:4069, 1/A2/4080:4082 | Isolated near basepair Not in a motif group | geometric IL_3NJ7_003 IL_52767.2 | |
| IL_6GZ4_141 | 1/A2/4069:4071, 1/A2/4077:4080 | Major groove platform with extra cWW Not in a motif group | geometric IL_3PDR_004 IL_18471.2 | |
| IL_6GZ4_142 | 1/A2/4153:4154, 1/A2/4164:4166 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.2 | |
| IL_6GZ4_143 | 1/A2/4205:4207, 1/A2/4225:4229 | No text annotation Not in a motif group | homologous IL_8C3A_108 IL_38958.7 | |
| IL_6GZ4_144 | 1/A2/4257:4260, 1/A2/4274:4277 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.2 | |
| IL_6GZ4_145 | 1/A2/4309:4312, 1/A2/4326:4327 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6GZ4_146 | 1/A2/4362:4363, 1/A2/4404:4406 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_27635.1 | |
| IL_6GZ4_147 | 1/A2/4363:4365, 1/A2/4402:4404 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_6GZ4_148 | 1/A2/4365:4367, 1/A2/4401:4402 | No text annotation Not in a motif group | homologous IL_8C3A_112 IL_76223.2 | |
| IL_6GZ4_149 | 1/A2/4367:4369, 1/A2/4397:4401 | No text annotation Not in a motif group | homologous IL_8C3A_113 IL_92788.2 | |
| IL_6GZ4_150 | 1/A2/4374:4378, 1/A2/4388:4392 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_6GZ4_151 | 1/A2/4415:4416, 1/A2/4488:4490 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.2 | |
| IL_6GZ4_152 | 1/A2/4418:4420, 1/A2/4482:4486 | No text annotation Not in a motif group | homologous IL_8C3A_116 IL_90933.2 | |
| IL_6GZ4_153 | 1/A2/4420:4421, 1/A2/4479:4482 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_6GZ4_154 | 1/A2/4428:4430, 1/A2/4451:4453 | No text annotation Not in a motif group | geometric IL_4KR9_001 IL_51629.2 | |
| IL_6GZ4_155 | 1/A2/4430:4432, 1/A2/4447:4451 | No text annotation Not in a motif group | ||
| IL_6GZ4_156 | 1/A2/4457:4459, 1/A2/4465:4467 | No text annotation Not in a motif group | geometric IL_1RPU_001 IL_95997.1 | |
| IL_6GZ4_157 | 1/A2/4499:4500, 1/A2/4509:4511 | Single bulged A Not in a motif group | geometric IL_7RQB_101 IL_37497.2 | |
| IL_6GZ4_158 | 1/A2/4542:4547, 1/A2/4679:4685 | No text annotation Not in a motif group | ||
| IL_6GZ4_159 | 1/A2/4552:4554, 1/A2/4580:4582 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_6GZ4_160 | 1/A2/4558:4565, 1/A2/4570:4576 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_6GZ4_161 | 1/A2/4586:4591, 1/A2/4631:4635 | No text annotation Not in a motif group | ||
| IL_6GZ4_162 | 1/A2/4594:4599, 1/A2/4624:4628 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_6GZ4_163 | 1/A2/4600:4602, 1/A2/4621:4623 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_6GZ4_164 | 1/A2/4603:4605, 1/A2/4616:4620 | No text annotation Not in a motif group | geometric IL_4M4O_001 IL_95997.1 | |
| IL_6GZ4_165 | 1/A2/4642:4647, 1/A2/4667:4672 | UAA/GAN with extra cWW Not in a motif group | geometric IL_5J7L_350 IL_49767.5 | |
| IL_6GZ4_166 | 1/A2/4701:4704, 1/A2/4916:4918 | No text annotation Not in a motif group | ||
| IL_6GZ4_167 | 1/A2/4704:4708, 1/A2/4912:4916 | No text annotation Not in a motif group | ||
| IL_6GZ4_168 | 1/A2/4708:4709, 1/A2/4910:4912 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6GZ4_169 | 1/A2/4843:4847, 1/A2/4888:4892 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_6GZ4_170 | 1/A2/4849:4855, 1/A2/4881:4886 | No text annotation Not in a motif group | ||
| IL_6GZ4_171 | 1/A2/4857:4859, 1/A2/4878:4879 | No text annotation Not in a motif group | ||
| IL_6GZ4_172 | 1/A2/4930:4933, 1/A2/4941:4944 | No text annotation Not in a motif group | homologous IL_8C3A_135 IL_30621.2 | |
| IL_6GZ4_173 | 1/A2/4950:4952, 1/A2/5015:5017 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_6GZ4_174 | 1/A2/4954:4955, 1/A2/5011:5013 | No text annotation Not in a motif group | homologous IL_8C3A_137 IL_83039.13 | |
| IL_6GZ4_175 | 1/A2/4958:4960, 1/A2/5003:5008 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.2 | |
| IL_6GZ4_176 | 1/A2/4961:4967, 1/A2/4997:5002 | No text annotation Not in a motif group | ||
| IL_6GZ4_177 | 1/A2/4970:4972, 1/A2/4993:4994 | Single bulged C Not in a motif group | geometric IL_4WF9_035 IL_61258.12 | |
| IL_6GZ4_178 | 1/A2/4972:4975, 1/A2/4990:4993 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_6GZ4_179 | 1/A3/64:66, 1/A3/92:95 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_6GZ4_180 | 1/A4/15:16, 1/A4/62:64 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_6GZ4_181 | 1/A4/21:27, 1/A4/52:57 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_6GZ4_182 | 1/A4/28:31, 1/A4/46:51 | No text annotation Not in a motif group | ||
| IL_6GZ4_183 | 1/A4/32:36, 1/A4/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_6GZ4_184 | 1/A4/71:78, 1/A4/98:104 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_6GZ4_185 | 1/A4/79:81, 1/A4/95:97 | No text annotation Not in a motif group | geometric IL_4V88_470 IL_51629.2 | |
| IL_6GZ4_186 | 1/A4/82:85, 1/A4/92:94 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_6GZ4_187 | 1/B1/23:25, 1/B1/649:651 | No text annotation Not in a motif group | geometric IL_5J7L_259 IL_95997.1 | |
| IL_6GZ4_188 | 1/B1/34:36, 1/B1/519:521 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_6GZ4_189 | 1/B1/37:40, 1/B1/514:518 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.9 | |
| IL_6GZ4_190 | 1/B1/41:47, 1/B1/479:481 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_6GZ4_191 | 1/B1/49:51, 1/B1/476:477 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6GZ4_192 | 1/B1/63:68, 1/B1/81:85 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_6GZ4_193 | 1/B1/108:110, 1/B1/351:353 | UU cWW Not in a motif group | geometric IL_3SZX_003 IL_95997.1 | |
| IL_6GZ4_194 | 1/B1/110:112, 1/B1/349:351 | No text annotation Not in a motif group | geometric IL_5TBW_378 IL_95997.1 | |
| IL_6GZ4_195 | 1/B1/112:115, 1/B1/348:349 | Multiple bulged bases Not in a motif group | geometric IL_5WLH_001 IL_44546.1 | |
| IL_6GZ4_196 | 1/B1/115:121, 1/B1/343:348 | No text annotation Not in a motif group | ||
| IL_6GZ4_197 | 1/B1/145:151, 1/B1/167:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_6GZ4_198 | 1/B1/152:155, 1/B1/163:166 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.2 | |
| IL_6GZ4_199 | 1/B1/188:192, 1/B1/207:211 | Triple sheared Not in a motif group | geometric IL_5J7L_274 IL_56467.8 | |
| IL_6GZ4_200 | 1/B1/216:219, 1/B1/302:309 | No text annotation Not in a motif group | ||
| IL_6GZ4_201 | 1/B1/312:314, 1/B1/336:337 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6GZ4_202 | 1/B1/317:319, 1/B1/332:333 | No text annotation Not in a motif group | ||
| IL_6GZ4_203 | 1/B1/359:364, 1/B1/396:403 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6GZ4_204 | 1/B1/366:371, 1/B1/393:394 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6GZ4_205 | 1/B1/411:413, 1/B1/424:429 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6GZ4_206 | 1/B1/437:439, 1/B1/454:456 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6GZ4_207 | 1/B1/459:461, 1/B1/468:470 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_6GZ4_208 | 1/B1/491:495, 1/B1/508:509 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6GZ4_209 | 1/B1/495:497, 1/B1/505:508 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_011 IL_51629.2 | |
| IL_6GZ4_210 | 1/B1/530:531, 1/B1/553:555 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.2 | |
| IL_6GZ4_211 | 1/B1/535:537, 1/B1/546:549 | No text annotation Not in a motif group | geometric IL_4KYY_002 IL_51629.2 | |
| IL_6GZ4_212 | 1/B1/566:569, 1/B1/581:584 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5C5W_003 IL_30621.2 | |
| IL_6GZ4_213 | 1/B1/599:606, 1/B1/636:637 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_6GZ4_214 | 1/B1/606:608, 1/B1/635:636 | Single bulged U Not in a motif group | geometric IL_3D2V_001 IL_83039.13 | |
| IL_6GZ4_215 | 1/B1/611:617, 1/B1/624:632 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_6GZ4_216 | 1/B1/663:665, 1/B1/1162:1164 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_6GZ4_217 | 1/B1/665:671, 1/B1/1161:1162 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_6GZ4_218 | 1/B1/673:675, 1/B1/1030:1032 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6GZ4_219 | 1/B1/676:680, 1/B1/1025:1029 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6GZ4_220 | 1/B1/747:749, 1/B1/794:795 | No text annotation Not in a motif group | ||
| IL_6GZ4_221 | 1/B1/801:803, 1/B1/860:864 | No text annotation Not in a motif group | ||
| IL_6GZ4_222 | 1/B1/805:807, 1/B1/856:858 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_6GZ4_223 | 1/B1/807:815, 1/B1/849:856 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_6GZ4_224 | 1/B1/877:879, 1/B1/907:910 | No text annotation Not in a motif group | ||
| IL_6GZ4_225 | 1/B1/922:923, 1/B1/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_6GZ4_226 | 1/B1/925:926, 1/B1/1015:1017 | Single bulged U Not in a motif group | geometric IL_7KVT_002 IL_83039.13 | |
| IL_6GZ4_227 | 1/B1/928:931, 1/B1/1010:1013 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_430 IL_30621.2 | |
| IL_6GZ4_228 | 1/B1/931:935, 1/B1/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_6GZ4_229 | 1/B1/942:945, 1/B1/981:984 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_6GZ4_230 | 1/B1/952:956, 1/B1/967:974 | Kink-turn Not in a motif group | homologous IL_4V88_434 IL_45067.2 | |
| IL_6GZ4_231 | 1/B1/1042:1047, 1/B1/1071:1073 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_6GZ4_232 | 1/B1/1047:1051, 1/B1/1067:1071 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_436 IL_17136.1 | |
| IL_6GZ4_233 | 1/B1/1091:1093, 1/B1/1152:1158 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6GZ4_234 | 1/B1/1098:1101, 1/B1/1131:1134 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.2 | |
| IL_6GZ4_235 | 1/B1/1101:1103, 1/B1/1129:1131 | No text annotation Not in a motif group | geometric IL_5UNE_001 IL_53251.2 | |
| IL_6GZ4_236 | 1/B1/1108:1110, 1/B1/1123:1124 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_6GZ4_237 | 1/B1/1168:1175, 1/B1/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_6GZ4_238 | 1/B1/1202:1204, 1/B1/1694:1697 | No text annotation Not in a motif group | geometric IL_4WF9_018 IL_51629.2 | |
| IL_6GZ4_239 | 1/B1/1206:1208, 1/B1/1691:1692 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_6GZ4_240 | 1/B1/1214:1217, 1/B1/1681:1685 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6GZ4_241 | 1/B1/1230:1232, 1/B1/1526:1528 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_6GZ4_242 | 1/B1/1235:1236, 1/B1/1521:1523 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6GZ4_243 | 1/B1/1270:1272, 1/B1/1510:1512 | No text annotation Not in a motif group | homologous IL_4V88_446 IL_95997.1 | |
| IL_6GZ4_244 | 1/B1/1281:1290, 1/B1/1309:1316 | No text annotation Not in a motif group | ||
| IL_6GZ4_245 | 1/B1/1291:1293, 1/B1/1306:1308 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_6GZ4_246 | 1/B1/1325:1327, 1/B1/1502:1503 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_6GZ4_247 | 1/B1/1329:1333, 1/B1/1498:1500 | Isolated cWS basepair Not in a motif group | homologous IL_4V88_450 IL_76319.2 | |
| IL_6GZ4_248 | 1/B1/1333:1335, 1/B1/1492:1498 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_451 IL_92788.2 | |
| IL_6GZ4_249 | 1/B1/1337:1338, 1/B1/1488:1490 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_6GZ4_250 | 1/B1/1347:1349, 1/B1/1380:1382 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_6GZ4_251 | 1/B1/1363:1365, 1/B1/1374:1375 | Minor groove platform Not in a motif group | homologous IL_4V88_454 IL_93353.1 | |
| IL_6GZ4_252 | 1/B1/1395:1399, 1/B1/1447:1450 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5J7L_283 IL_30621.2 | |
| IL_6GZ4_253 | 1/B1/1402:1406, 1/B1/1440:1444 | No text annotation Not in a motif group | ||
| IL_6GZ4_254 | 1/B1/1408:1412, 1/B1/1425:1438 | No text annotation Not in a motif group | ||
| IL_6GZ4_255 | 1/B1/1412:1415, 1/B1/1422:1425 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_67743.1 | |
| IL_6GZ4_256 | 1/B1/1537:1539, 1/B1/1594:1596 | No text annotation Not in a motif group | geometric IL_3SZX_002 IL_95997.1 | |
| IL_6GZ4_257 | 1/B1/1550:1558, 1/B1/1577:1582 | No text annotation Not in a motif group | geometric IL_4LFB_052 IL_84205.1 | |
| IL_6GZ4_258 | 1/B1/1560:1562, 1/B1/1573:1575 | No text annotation Not in a motif group | geometric IL_4E48_003 IL_95997.1 | |
| IL_6GZ4_259 | 1/B1/1604:1610, 1/B1/1629:1635 | No text annotation Not in a motif group | homologous IL_8C3A_469 IL_10092.1 | |
| IL_6GZ4_260 | 1/B1/1700:1702, 1/B1/1833:1836 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_6GZ4_261 | 1/B1/1702:1705, 1/B1/1829:1833 | No text annotation Not in a motif group | ||
| IL_6GZ4_262 | 1/B1/1706:1708, 1/B1/1826:1828 | No text annotation Not in a motif group | homologous IL_4V88_465 IL_95997.1 | |
| IL_6GZ4_263 | 1/B1/1708:1711, 1/B1/1822:1826 | No text annotation Not in a motif group | geometric IL_1CSL_001 IL_67743.1 | |
| IL_6GZ4_264 | 1/B1/1714:1716, 1/B1/1817:1819 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6GZ4_265 | 1/B1/1717:1720, 1/B1/1813:1816 | Double sheared Not in a motif group | homologous IL_4V88_468 IL_09705.9 | |
| IL_6GZ4_266 | 1/B1/1720:1722, 1/B1/1812:1813 | Single bulged U Not in a motif group | geometric IL_4V88_469 IL_83039.13 | |
| IL_6GZ4_267 | 1/B1/1729:1731, 1/B1/1803:1805 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_6GZ4_268 | 1/B1/1733:1736, 1/B1/1798:1801 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_6GZ4_269 | 1/B1/1739:1741, 1/B1/1793:1795 | UU cWW water inserted Not in a motif group | geometric IL_4E48_002 IL_95997.1 | |
| IL_6GZ4_270 | 1/B1/1742:1746, 1/B1/1788:1792 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_6GZ4_271 | 1/B1/1750:1752, 1/B1/1780:1784 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6GZ4_001 | 1/A2/112:118, 1/A2/151:158, 1/A2/269:272 | No text annotation Not in a motif group | ||
| J3_6GZ4_002 | 1/A2/442:450, 1/A2/692:696, 1/A2/1275:1281 | No text annotation Not in a motif group | ||
| J3_6GZ4_003 | 1/A2/1083:1087, 1/A2/1148:1150, 1/A2/1177:1178 | No text annotation Not in a motif group | ||
| J3_6GZ4_004 | 1/A2/1513:1519, 1/A2/1604:1606, 1/A2/1622:1625 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_6GZ4_005 | 1/A2/1527:1530, 1/A2/1562:1566, 1/A2/1591:1596 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_6GZ4_006 | 1/A2/1950:1952, 1/A2/1976:1982, 1/A2/1997:1999 | No text annotation Not in a motif group | homologous J3_8C3A_005 NA | |
| J3_6GZ4_007 | 1/A2/2372:2378, 1/A2/2784:2786, 1/A2/2798:2801 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_6GZ4_008 | 1/A2/2381:2384, 1/A2/2764:2770, 1/A2/2779:2781 | No text annotation Not in a motif group | homologous J3_8C3A_007 NA | |
| J3_6GZ4_009 | 1/A2/2419:2424, 1/A2/2494:2498, 1/A2/2515:2516 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_6GZ4_010 | 1/A2/2530:2534, 1/A2/2551:2554, 1/A2/2736:2746 | No text annotation Not in a motif group | ||
| J3_6GZ4_011 | 1/A2/2554:2555, 1/A2/2564:2568, 1/A2/2735:2736 | No text annotation Not in a motif group | ||
| J3_6GZ4_012 | 1/A2/3908:3910, 1/A2/4044:4048, 1/A2/4130:4135 | No text annotation Not in a motif group | ||
| J3_6GZ4_013 | 1/A2/4061:4064, 1/A2/4083:4098, 1/A2/4117:4120 | No text annotation Not in a motif group | ||
| J3_6GZ4_014 | 1/A2/4203:4205, 1/A2/4229:4231, 1/A2/4240:4245 | No text annotation Not in a motif group | homologous J3_8C3A_010 NA | |
| J3_6GZ4_015 | 1/A2/4425:4428, 1/A2/4453:4455, 1/A2/4469:4475 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_6GZ4_016 | 1/A2/4928:4930, 1/A2/4944:4950, 1/A2/5017:5021 | No text annotation Not in a motif group | ||
| J3_6GZ4_017 | 1/A3/44:45, 1/A3/58:64, 1/A3/95:99 | No text annotation Not in a motif group | ||
| J3_6GZ4_018 | 1/A4/9:14, 1/A4/65:67, 1/A4/108:110 | No text annotation Not in a motif group | ||
| J3_6GZ4_019 | 1/B1/40:41, 1/B1/481:489, 1/B1/511:514 | No text annotation Not in a motif group | ||
| J3_6GZ4_020 | 1/B1/682:685, 1/B1/917:922, 1/B1/1022:1023 | No text annotation Not in a motif group | ||
| J3_6GZ4_021 | 1/B1/816:819, 1/B1/829:831, 1/B1/843:848 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_6GZ4_022 | 1/B1/938:941, 1/B1/985:993, 1/B1/1000:1004 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6GZ4_023 | 1/B1/1094:1096, 1/B1/1136:1140, 1/B1/1147:1151 | No text annotation Not in a motif group | ||
| J3_6GZ4_024 | 1/B1/1218:1221, 1/B1/1645:1651, 1/B1/1673:1680 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_6GZ4_025 | 1/B1/1225:1228, 1/B1/1530:1532, 1/B1/1638:1641 | No text annotation Not in a motif group | homologous J3_8C3A_039 NA | |
| J3_6GZ4_026 | 1/B1/1237:1244, 1/B1/1255:1266, 1/B1/1516:1520 | No text annotation Not in a motif group | ||
| J3_6GZ4_027 | 1/B1/1272:1277, 1/B1/1320:1325, 1/B1/1503:1510 | No text annotation Not in a motif group | ||
| J3_6GZ4_028 | 1/B1/1340:1345, 1/B1/1384:1389, 1/B1/1481:1486 | No text annotation Not in a motif group | ||
| J3_6GZ4_029 | 1/B1/1350:1351, 1/B1/1360:1363, 1/B1/1375:1379 | No text annotation Not in a motif group | ||
| J3_6GZ4_030 | 1/B1/1532:1536, 1/B1/1597:1604, 1/B1/1635:1638 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: