6SKG Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6SKG_001 | 1/Aa/6:18 | No text annotation Not in a motif group | ||
| HL_6SKG_002 | 1/Aa/138:143 | No text annotation Not in a motif group | ||
| HL_6SKG_003 | 1/Aa/173:180 | No text annotation Not in a motif group | ||
| HL_6SKG_005 | 1/Aa/247:255 | No text annotation Not in a motif group | ||
| HL_6SKG_006 | 1/Aa/284:289 | No text annotation Not in a motif group | ||
| HL_6SKG_007 | 1/Aa/308:321 | No text annotation Not in a motif group | ||
| HL_6SKG_008 | 1/Aa/330:335 | No text annotation Not in a motif group | ||
| HL_6SKG_009 | 1/Aa/367:372 | No text annotation Not in a motif group | ||
| HL_6SKG_011 | 1/Aa/423:431 | No text annotation Not in a motif group | ||
| HL_6SKG_012 | 1/Aa/467:472 | No text annotation Not in a motif group | ||
| HL_6SKG_013 | 1/Aa/562:568 | No text annotation Not in a motif group | ||
| HL_6SKG_014 | 1/Aa/635:644 | No text annotation Not in a motif group | ||
| HL_6SKG_015 | 1/Aa/671:678 | No text annotation Not in a motif group | ||
| HL_6SKG_016 | 1/Aa/732:742 | No text annotation Not in a motif group | ||
| HL_6SKG_017 | 1/Aa/788:794 | No text annotation Not in a motif group | ||
| HL_6SKG_018 | 1/Aa/812:817 | No text annotation Not in a motif group | ||
| HL_6SKG_019 | 1/Aa/846:853 | No text annotation Not in a motif group | ||
| HL_6SKG_020 | 1/Aa/964:970 | No text annotation Not in a motif group | ||
| HL_6SKG_021 | 1/Aa/1019:1026 | No text annotation Not in a motif group | ||
| HL_6SKG_022 | 1/Aa/1033:1040 | No text annotation Not in a motif group | ||
| HL_6SKG_023 | 1/Aa/1083:1087 | No text annotation Not in a motif group | ||
| HL_6SKG_024 | 1/Aa/1117:1123 | No text annotation Not in a motif group | ||
| HL_6SKG_025 | 1/Aa/1217:1222 | No text annotation Not in a motif group | ||
| HL_6SKG_026 | 1/Aa/1265:1276 | No text annotation Not in a motif group | ||
| HL_6SKG_027 | 1/Aa/1309:1317 | No text annotation Not in a motif group | ||
| HL_6SKG_028 | 1/Aa/1399:1402 | No text annotation Not in a motif group | ||
| HL_6SKG_029 | 1/Aa/1464:1469 | No text annotation Not in a motif group | ||
| HL_6SKG_030 | 1/BA/68:77 | No text annotation Not in a motif group | homologous HL_4V9F_001 HL_99167.1 | |
| HL_6SKG_031 | 1/BA/96:104 | No text annotation Not in a motif group | homologous HL_4V9F_002 HL_96598.1 | |
| HL_6SKG_032 | 1/BA/131:136 | No text annotation Not in a motif group | homologous HL_4V9F_003 HL_52841.1 | |
| HL_6SKG_034 | 1/BA/158:163 | No text annotation Not in a motif group | homologous HL_4V9F_005 HL_03562.2 | |
| HL_6SKG_035 | 1/BA/185:192 | No text annotation Not in a motif group | homologous HL_4V9F_006 HL_06192.2 | |
| HL_6SKG_036 | 1/BA/216:221 | No text annotation Not in a motif group | geometric HL_4WF9_007 HL_02862.2 | |
| HL_6SKG_037 | 1/BA/237:243 | No text annotation Not in a motif group | homologous HL_4V9F_008 HL_67216.7 | |
| HL_6SKG_038 | 1/BA/277:282 | GNRA Not in a motif group | homologous HL_4V9F_009 HL_42097.1 | |
| HL_6SKG_039 | 1/BA/344:351 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V9F_010 HL_89380.2 | |
| HL_6SKG_040 | 1/BA/358:362 | No text annotation Not in a motif group | homologous HL_4V9F_011 HL_75407.1 | |
| HL_6SKG_041 | 1/BA/366:374 | No text annotation Not in a motif group | geometric HL_5J7L_144 HL_08002.8 | |
| HL_6SKG_042 | 1/BA/423:432 | No text annotation Not in a motif group | homologous HL_4V9F_013 HL_71554.2 | |
| HL_6SKG_043 | 1/BA/449:457 | No text annotation Not in a motif group | homologous HL_4V9F_014 HL_12078.2 | |
| HL_6SKG_044 | 1/BA/501:506 | GNRA Not in a motif group | homologous HL_4V9F_015 HL_42097.1 | |
| HL_6SKG_045 | 1/BA/526:531 | GNRA with GA tSW pair Not in a motif group | geometric HL_4ZT0_006 HL_42097.1 | |
| HL_6SKG_046 | 1/BA/611:616 | GNRA Not in a motif group | homologous HL_4V9F_017 HL_42097.1 | |
| HL_6SKG_047 | 1/BA/656:667 | No text annotation Not in a motif group | geometric HL_4V7M_040 HL_22031.1 | |
| HL_6SKG_048 | 1/BA/704:710 | No text annotation Not in a motif group | homologous HL_4V9F_019 HL_90617.2 | |
| HL_6SKG_049 | 1/BA/724:729 | GNRA Not in a motif group | homologous HL_4V9F_020 HL_42097.1 | |
| HL_6SKG_051 | 1/BA/768:773 | Other HL Not in a motif group | homologous HL_4V9F_022 HL_30784.2 | |
| HL_6SKG_052 | 1/BA/839:844 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6SKG_053 | 1/BA/871:882 | No text annotation Not in a motif group | ||
| HL_6SKG_054 | 1/BA/907:913 | No text annotation Not in a motif group | homologous HL_4V9F_025 HL_74322.1 | |
| HL_6SKG_055 | 1/BA/954:959 | No text annotation Not in a motif group | homologous HL_4V9F_026 HL_64365.1 | |
| HL_6SKG_056 | 1/BA/1015:1023 | No text annotation Not in a motif group | ||
| HL_6SKG_057 | 1/BA/1085:1090 | GNRA Not in a motif group | homologous HL_4V9F_028 HL_42097.1 | |
| HL_6SKG_058 | 1/BA/1106:1113 | No text annotation Not in a motif group | homologous HL_4V9F_029 HL_64430.2 | |
| HL_6SKG_059 | 1/BA/1305:1310 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6SKG_060 | 1/BA/1357:1362 | GNRA Not in a motif group | homologous HL_4V9F_033 HL_42097.1 | |
| HL_6SKG_061 | 1/BA/1417:1425 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V9F_034 HL_89380.2 | |
| HL_6SKG_062 | 1/BA/1460:1466 | No text annotation Not in a motif group | homologous HL_4V9F_035 HL_46680.1 | |
| HL_6SKG_063 | 1/BA/1498:1504 | GNRA Not in a motif group | homologous HL_4V9F_036 HL_42097.1 | |
| HL_6SKG_064 | 1/BA/1527:1536 | No text annotation Not in a motif group | homologous HL_4V9F_037 HL_69023.2 | |
| HL_6SKG_065 | 1/BA/1558:1563 | GNRA Not in a motif group | geometric HL_5TBW_030 HL_42097.1 | |
| HL_6SKG_066 | 1/BA/1604:1610 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6SKG_067 | 1/BA/1641:1647 | Other HL Not in a motif group | homologous HL_4V9F_039 HL_27930.1 | |
| HL_6SKG_068 | 1/BA/1679:1686 | No text annotation Not in a motif group | ||
| HL_6SKG_069 | 1/BA/1710:1714 | No text annotation Not in a motif group | homologous HL_4V9F_041 HL_49678.1 | |
| HL_6SKG_070 | 1/BA/1757:1764 | No text annotation Not in a motif group | homologous HL_4V9F_042 HL_64430.2 | |
| HL_6SKG_071 | 1/BA/1775:1783 | No text annotation Not in a motif group | homologous HL_4V9F_043 HL_84085.2 | |
| HL_6SKG_072 | 1/BA/1839:1844 | UNCG Not in a motif group | geometric HL_5Y85_004 HL_03562.2 | |
| HL_6SKG_073 | 1/BA/1864:1870 | GNRA Not in a motif group | homologous HL_4V9F_045 HL_42097.1 | |
| HL_6SKG_074 | 1/BA/1880:1884 | No text annotation Not in a motif group | homologous HL_4V9F_046 HL_76539.2 | |
| HL_6SKG_075 | 1/BA/1905:1915 | No text annotation Not in a motif group | homologous HL_4V9F_047 HL_43613.5 | |
| HL_6SKG_076 | 1/BA/1934:1939 | GNRA Not in a motif group | homologous HL_4V9F_048 HL_42097.1 | |
| HL_6SKG_077 | 1/BA/1987:1996 | No text annotation Not in a motif group | ||
| HL_6SKG_078 | 1/BA/2021:2036 | No text annotation Not in a motif group | ||
| HL_6SKG_079 | 1/BA/2063:2069 | No text annotation Not in a motif group | ||
| HL_6SKG_080 | 1/BA/2139:2148 | No text annotation Not in a motif group | homologous HL_4V9F_052 HL_90642.6 | |
| HL_6SKG_081 | 1/BA/2255:2261 | No text annotation Not in a motif group | ||
| HL_6SKG_082 | 1/BA/2316:2321 | GNRA Not in a motif group | homologous HL_4V9F_054 HL_42097.1 | |
| HL_6SKG_083 | 1/BA/2350:2358 | No text annotation Not in a motif group | homologous HL_4V9F_055 HL_53171.2 | |
| HL_6SKG_084 | 1/BA/2366:2380 | No text annotation Not in a motif group | ||
| HL_6SKG_085 | 1/BA/2406:2416 | No text annotation Not in a motif group | ||
| HL_6SKG_086 | 1/BA/2426:2435 | No text annotation Not in a motif group | geometric HL_7A0S_011 HL_75407.1 | |
| HL_6SKG_087 | 1/BA/2459:2467 | No text annotation Not in a motif group | geometric HL_5J7L_185 HL_16845.6 | |
| HL_6SKG_088 | 1/BA/2480:2485 | GNRA Not in a motif group | homologous HL_4V9F_060 HL_42097.1 | |
| HL_6SKG_089 | 1/BA/2511:2519 | No text annotation Not in a motif group | homologous HL_4V9F_061 HL_12078.2 | |
| HL_6SKG_090 | 1/BA/2575:2583 | No text annotation Not in a motif group | homologous HL_4V9F_062 HL_06192.2 | |
| HL_6SKG_091 | 1/BA/2632:2639 | No text annotation Not in a motif group | homologous HL_4V9F_063 HL_88526.2 | |
| HL_6SKG_092 | 1/BA/2654:2662 | No text annotation Not in a motif group | homologous HL_4V9F_064 NA | |
| HL_6SKG_093 | 1/BA/2698:2703 | GNRA Not in a motif group | homologous HL_4V9F_065 HL_42097.1 | |
| HL_6SKG_094 | 1/BA/2763:2768 | GNRA Not in a motif group | homologous HL_4V9F_066 HL_42097.1 | |
| HL_6SKG_095 | 1/BA/2805:2810 | Ribsomal LSU H95 Not in a motif group | homologous HL_4V9F_067 HL_46680.1 | |
| HL_6SKG_096 | 1/BA/2847:2861 | No text annotation Not in a motif group | homologous HL_4V9F_068 HL_56677.7 | |
| HL_6SKG_097 | 1/BA/2945:2953 | No text annotation Not in a motif group | homologous HL_4V9F_069 HL_27930.1 | |
| HL_6SKG_098 | 1/BA/2986:2991 | GNRA Not in a motif group | geometric HL_4V88_218 HL_42097.1 | |
| HL_6SKG_099 | 1/BB/38:44 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6SKG_100 | 1/BB/90:95 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6SKG_004 | No text annotation | ||
| HL_6SKG_010 | No text annotation | ||
| HL_6SKG_033 | No text annotation | ||
| HL_6SKG_050 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6SKG_001 | 1/Aa/24:26, 1/Aa/497:499 | No text annotation Not in a motif group | ||
| IL_6SKG_002 | 1/Aa/27:29, 1/Aa/494:496 | No text annotation Not in a motif group | ||
| IL_6SKG_003 | 1/Aa/50:52, 1/Aa/344:345 | No text annotation Not in a motif group | ||
| IL_6SKG_004 | 1/Aa/59:62, 1/Aa/82:83 | No text annotation Not in a motif group | ||
| IL_6SKG_005 | 1/Aa/63:65, 1/Aa/79:81 | No text annotation Not in a motif group | ||
| IL_6SKG_006 | 1/Aa/108:116, 1/Aa/215:220 | No text annotation Not in a motif group | ||
| IL_6SKG_007 | 1/Aa/120:122, 1/Aa/209:211 | No text annotation Not in a motif group | ||
| IL_6SKG_008 | 1/Aa/128:133, 1/Aa/148:154 | No text annotation Not in a motif group | ||
| IL_6SKG_009 | 1/Aa/133:135, 1/Aa/146:148 | No text annotation Not in a motif group | ||
| IL_6SKG_010 | 1/Aa/170:172, 1/Aa/181:182 | No text annotation Not in a motif group | ||
| IL_6SKG_011 | 1/Aa/228:230, 1/Aa/272:274 | No text annotation Not in a motif group | ||
| IL_6SKG_012 | 1/Aa/230:235, 1/Aa/265:272 | No text annotation Not in a motif group | ||
| IL_6SKG_013 | 1/Aa/237:240, 1/Aa/262:263 | No text annotation Not in a motif group | ||
| IL_6SKG_014 | 1/Aa/280:281, 1/Aa/292:296 | No text annotation Not in a motif group | ||
| IL_6SKG_015 | 1/Aa/359:363, 1/Aa/377:378 | No text annotation Not in a motif group | ||
| IL_6SKG_016 | 1/Aa/363:364, 1/Aa/375:377 | No text annotation Not in a motif group | ||
| IL_6SKG_017 | 1/Aa/445:447, 1/Aa/487:489 | No text annotation Not in a motif group | ||
| IL_6SKG_018 | 1/Aa/448:455, 1/Aa/485:486 | No text annotation Not in a motif group | ||
| IL_6SKG_019 | 1/Aa/455:458, 1/Aa/483:485 | No text annotation Not in a motif group | ||
| IL_6SKG_020 | 1/Aa/460:467, 1/Aa/472:481 | No text annotation Not in a motif group | ||
| IL_6SKG_021 | 1/Aa/514:520, 1/Aa/830:831 | No text annotation Not in a motif group | ||
| IL_6SKG_022 | 1/Aa/525:529, 1/Aa/703:707 | No text annotation Not in a motif group | ||
| IL_6SKG_023 | 1/Aa/539:541, 1/Aa/590:591 | No text annotation Not in a motif group | ||
| IL_6SKG_024 | 1/Aa/542:543, 1/Aa/586:589 | No text annotation Not in a motif group | ||
| IL_6SKG_025 | 1/Aa/550:557, 1/Aa/573:579 | No text annotation Not in a motif group | ||
| IL_6SKG_026 | 1/Aa/600:601, 1/Aa/697:700 | No text annotation Not in a motif group | ||
| IL_6SKG_027 | 1/Aa/603:604, 1/Aa/693:695 | No text annotation Not in a motif group | ||
| IL_6SKG_028 | 1/Aa/606:612, 1/Aa/686:691 | No text annotation Not in a motif group | ||
| IL_6SKG_029 | 1/Aa/612:614, 1/Aa/684:686 | No text annotation Not in a motif group | ||
| IL_6SKG_030 | 1/Aa/620:624, 1/Aa/658:662 | No text annotation Not in a motif group | ||
| IL_6SKG_031 | 1/Aa/628:630, 1/Aa/652:654 | No text annotation Not in a motif group | ||
| IL_6SKG_032 | 1/Aa/630:634, 1/Aa/645:652 | No text annotation Not in a motif group | ||
| IL_6SKG_033 | 1/Aa/717:720, 1/Aa/751:754 | No text annotation Not in a motif group | ||
| IL_6SKG_034 | 1/Aa/720:724, 1/Aa/750:751 | No text annotation Not in a motif group | ||
| IL_6SKG_035 | 1/Aa/725:729, 1/Aa/745:749 | No text annotation Not in a motif group | ||
| IL_6SKG_036 | 1/Aa/835:837, 1/Aa/860:862 | No text annotation Not in a motif group | ||
| IL_6SKG_037 | 1/Aa/837:844, 1/Aa/855:860 | No text annotation Not in a motif group | ||
| IL_6SKG_038 | 1/Aa/844:846, 1/Aa/853:855 | No text annotation Not in a motif group | ||
| IL_6SKG_039 | 1/Aa/872:873, 1/Aa/1345:1347 | No text annotation Not in a motif group | ||
| IL_6SKG_040 | 1/Aa/875:877, 1/Aa/1342:1343 | No text annotation Not in a motif group | ||
| IL_6SKG_041 | 1/Aa/883:886, 1/Aa/1332:1336 | No text annotation Not in a motif group | ||
| IL_6SKG_042 | 1/Aa/890:892, 1/Aa/1294:1296 | No text annotation Not in a motif group | ||
| IL_6SKG_043 | 1/Aa/899:901, 1/Aa/1183:1185 | No text annotation Not in a motif group | ||
| IL_6SKG_044 | 1/Aa/904:905, 1/Aa/1178:1180 | No text annotation Not in a motif group | ||
| IL_6SKG_045 | 1/Aa/906:935, 1/Aa/1173:1177 | No text annotation Not in a motif group | ||
| IL_6SKG_047 | 1/Aa/959:961, 1/Aa/973:975 | No text annotation Not in a motif group | ||
| IL_6SKG_048 | 1/Aa/962:964, 1/Aa/970:972 | No text annotation Not in a motif group | ||
| IL_6SKG_049 | 1/Aa/992:1000, 1/Aa/1156:1161 | No text annotation Not in a motif group | ||
| IL_6SKG_050 | 1/Aa/1000:1002, 1/Aa/1151:1156 | No text annotation Not in a motif group | ||
| IL_6SKG_051 | 1/Aa/1002:1005, 1/Aa/1147:1151 | No text annotation Not in a motif group | ||
| IL_6SKG_052 | 1/Aa/1068:1071, 1/Aa/1097:1101 | No text annotation Not in a motif group | ||
| IL_6SKG_053 | 1/Aa/1073:1077, 1/Aa/1093:1095 | No text annotation Not in a motif group | ||
| IL_6SKG_054 | 1/Aa/1110:1113, 1/Aa/1127:1133 | No text annotation Not in a motif group | ||
| IL_6SKG_055 | 1/Aa/1199:1205, 1/Aa/1236:1242 | No text annotation Not in a motif group | ||
| IL_6SKG_056 | 1/Aa/1207:1210, 1/Aa/1229:1234 | No text annotation Not in a motif group | ||
| IL_6SKG_057 | 1/Aa/1211:1214, 1/Aa/1225:1228 | No text annotation Not in a motif group | ||
| IL_6SKG_058 | 1/Aa/1215:1217, 1/Aa/1222:1224 | No text annotation Not in a motif group | ||
| IL_6SKG_059 | 1/Aa/1255:1260, 1/Aa/1281:1286 | No text annotation Not in a motif group | ||
| IL_6SKG_060 | 1/Aa/1304:1307, 1/Aa/1319:1322 | No text annotation Not in a motif group | ||
| IL_6SKG_061 | 1/Aa/1351:1353, 1/Aa/1450:1453 | No text annotation Not in a motif group | ||
| IL_6SKG_062 | 1/Aa/1353:1356, 1/Aa/1446:1450 | No text annotation Not in a motif group | ||
| IL_6SKG_063 | 1/Aa/1357:1359, 1/Aa/1443:1445 | No text annotation Not in a motif group | ||
| IL_6SKG_064 | 1/Aa/1359:1362, 1/Aa/1439:1443 | No text annotation Not in a motif group | ||
| IL_6SKG_065 | 1/Aa/1364:1366, 1/Aa/1435:1437 | No text annotation Not in a motif group | ||
| IL_6SKG_066 | 1/Aa/1368:1371, 1/Aa/1430:1433 | No text annotation Not in a motif group | ||
| IL_6SKG_067 | 1/Aa/1372:1374, 1/Aa/1428:1429 | No text annotation Not in a motif group | ||
| IL_6SKG_068 | 1/Aa/1374:1376, 1/Aa/1425:1428 | No text annotation Not in a motif group | ||
| IL_6SKG_069 | 1/Aa/1383:1386, 1/Aa/1415:1418 | No text annotation Not in a motif group | ||
| IL_6SKG_070 | 1/Aa/1456:1458, 1/Aa/1475:1477 | No text annotation Not in a motif group | ||
| IL_6SKG_071 | 1/BA/33:39, 1/BA/547:553 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_4V9F_001 IL_66414.6 | |
| IL_6SKG_072 | 1/BA/45:46, 1/BA/481:483 | Single bulged A Not in a motif group | homologous IL_4V9F_002 IL_37497.2 | |
| IL_6SKG_073 | 1/BA/50:52, 1/BA/476:477 | Major groove platform Not in a motif group | geometric IL_1G1X_002 IL_27635.1 | |
| IL_6SKG_074 | 1/BA/52:53, 1/BA/474:476 | Minor groove platform Not in a motif group | geometric IL_3K0J_002 IL_42622.2 | |
| IL_6SKG_075 | 1/BA/90:94, 1/BA/106:113 | Kink-turn Not in a motif group | homologous IL_4V9F_004 IL_70923.2 | |
| IL_6SKG_076 | 1/BA/174:175, 1/BA/203:205 | Single stack bend Not in a motif group | homologous IL_4V9F_005 IL_76488.2 | |
| IL_6SKG_077 | 1/BA/179:185, 1/BA/192:199 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4V9F_006 IL_04346.7 | |
| IL_6SKG_078 | 1/BA/230:236, 1/BA/244:249 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4V9F_007 IL_76042.2 | |
| IL_6SKG_079 | 1/BA/265:268, 1/BA/295:296 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V9F_008 IL_50694.2 | |
| IL_6SKG_080 | 1/BA/268:269, 1/BA/290:295 | No text annotation Not in a motif group | homologous IL_4V9F_009 IL_19724.2 | |
| IL_6SKG_081 | 1/BA/270:272, 1/BA/287:289 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_6SKG_082 | 1/BA/307:308, 1/BA/406:408 | Single bulged U Not in a motif group | geometric IL_6UFG_004 IL_83039.13 | |
| IL_6SKG_083 | 1/BA/308:309, 1/BA/404:406 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_6SKG_084 | 1/BA/312:315, 1/BA/400:401 | No text annotation Not in a motif group | ||
| IL_6SKG_085 | 1/BA/320:322, 1/BA/393:395 | No text annotation Not in a motif group | geometric IL_5J7L_259 IL_95997.1 | |
| IL_6SKG_086 | 1/BA/322:324, 1/BA/392:393 | Minor groove platform Not in a motif group | geometric IL_4V88_445 IL_42622.2 | |
| IL_6SKG_087 | 1/BA/329:333, 1/BA/382:387 | No text annotation Not in a motif group | ||
| IL_6SKG_088 | 1/BA/339:341, 1/BA/354:355 | Single bulged U Not in a motif group | homologous IL_4V9F_013 IL_83039.13 | |
| IL_6SKG_089 | 1/BA/341:343, 1/BA/352:354 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_6SKG_090 | 1/BA/364:366, 1/BA/374:376 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_6SKG_091 | 1/BA/520:523, 1/BA/534:546 | No text annotation Not in a motif group | ||
| IL_6SKG_092 | 1/BA/579:585, 1/BA/639:642 | No text annotation Not in a motif group | ||
| IL_6SKG_093 | 1/BA/585:592, 1/BA/635:639 | Kink-turn Not in a motif group | geometric IL_5G4U_006 IL_07486.1 | |
| IL_6SKG_094 | 1/BA/598:602, 1/BA/626:629 | UAA/GAN variation Not in a motif group | geometric IL_5J7L_303 IL_07235.1 | |
| IL_6SKG_095 | 1/BA/602:607, 1/BA/620:626 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4V9F_019 IL_16458.1 | |
| IL_6SKG_096 | 1/BA/673:675, 1/BA/1391:1393 | No text annotation Not in a motif group | geometric IL_4V9F_105 IL_95997.1 | |
| IL_6SKG_097 | 1/BA/697:701, 1/BA/713:717 | AAA cross-strand stack Not in a motif group | homologous IL_4V9F_020 IL_17136.1 | |
| IL_6SKG_098 | 1/BA/733:736, 1/BA/761:762 | Multiple bulged bases Not in a motif group | homologous IL_4V9F_021 IL_76389.1 | |
| IL_6SKG_099 | 1/BA/739:743, 1/BA/754:758 | tSH-tHW-tHS Not in a motif group | homologous IL_4V9F_022 IL_17136.1 | |
| IL_6SKG_100 | 1/BA/798:804, 1/BA/927:936 | No text annotation Not in a motif group | ||
| IL_6SKG_101 | 1/BA/823:824, 1/BA/891:893 | Single bulged A Not in a motif group | homologous IL_4V9F_025 IL_37497.2 | |
| IL_6SKG_102 | 1/BA/828:835, 1/BA/848:856 | No text annotation Not in a motif group | ||
| IL_6SKG_103 | 1/BA/865:868, 1/BA/884:886 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V9F_028 IL_05564.2 | |
| IL_6SKG_104 | 1/BA/903:905, 1/BA/915:919 | Multiple bulged bases Not in a motif group | geometric IL_4V9F_030 IL_90991.6 | |
| IL_6SKG_105 | 1/BA/941:943, 1/BA/1328:1330 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_6SKG_106 | 1/BA/965:966, 1/BA/1071:1073 | Single stack bend Not in a motif group | geometric IL_7A0S_022 IL_92001.1 | |
| IL_6SKG_107 | 1/BA/971:975, 1/BA/1059:1066 | Kink-turn Not in a motif group | homologous IL_4V9F_031 IL_45067.2 | |
| IL_6SKG_108 | 1/BA/977:979, 1/BA/1056:1057 | Single bulged A Not in a motif group | homologous IL_4V9F_032 IL_37497.2 | |
| IL_6SKG_109 | 1/BA/987:991, 1/BA/1044:1048 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_4V9F_033 IL_38862.1 | |
| IL_6SKG_110 | 1/BA/991:992, 1/BA/1042:1044 | Minor groove platform Not in a motif group | geometric IL_4V9F_034 IL_42622.2 | |
| IL_6SKG_111 | 1/BA/993:997, 1/BA/1038:1041 | C-loop Not in a motif group | geometric IL_4WF9_033 IL_02509.1 | |
| IL_6SKG_112 | 1/BA/999:1002, 1/BA/1033:1036 | No text annotation Not in a motif group | homologous IL_4V9F_036 IL_45371.1 | |
| IL_6SKG_113 | 1/BA/1007:1012, 1/BA/1026:1028 | No text annotation Not in a motif group | ||
| IL_6SKG_114 | 1/BA/1079:1080, 1/BA/1095:1097 | Major groove platform Not in a motif group | geometric IL_4V9F_082 IL_27635.1 | |
| IL_6SKG_115 | 1/BA/1125:1129, 1/BA/1285:1289 | UAA/GAN Not in a motif group | homologous IL_4V9F_037 IL_89002.2 | |
| IL_6SKG_116 | 1/BA/1131:1138, 1/BA/1282:1283 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4V9F_038 IL_15861.7 | |
| IL_6SKG_117 | 1/BA/1138:1140, 1/BA/1281:1282 | Single bulged U Not in a motif group | geometric IL_4V9F_039 IL_83039.13 | |
| IL_6SKG_118 | 1/BA/1145:1151, 1/BA/1271:1276 | No text annotation Not in a motif group | homologous IL_4V9F_040 IL_57188.3 | |
| IL_6SKG_119 | 1/BA/1164:1166, 1/BA/1253:1254 | Single bulged G Not in a motif group | homologous IL_4V9F_041 IL_00225.2 | |
| IL_6SKG_120 | 1/BA/1175:1186, 1/BA/1236:1244 | No text annotation Not in a motif group | ||
| IL_6SKG_121 | 1/BA/1297:1298, 1/BA/1317:1320 | No text annotation Not in a motif group | homologous IL_4V9F_045 IL_44546.1 | |
| IL_6SKG_122 | 1/BA/1332:1334, 1/BA/1382:1385 | Isolated cWS basepair Not in a motif group | homologous IL_4V9F_046 IL_52767.2 | |
| IL_6SKG_123 | 1/BA/1343:1350, 1/BA/1369:1373 | Kink-turn Not in a motif group | homologous IL_4V9F_048 IL_70923.2 | |
| IL_6SKG_124 | 1/BA/1398:1405, 1/BA/2123:2129 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge Not in a motif group | geometric IL_4V9F_012 IL_59724.1 | |
| IL_6SKG_125 | 1/BA/1446:1449, 1/BA/1748:1749 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V9F_050 IL_50694.2 | |
| IL_6SKG_126 | 1/BA/1455:1459, 1/BA/1467:1469 | C-loop Not in a motif group | homologous IL_4V9F_051 IL_63596.6 | |
| IL_6SKG_127 | 1/BA/1486:1490, 1/BA/1513:1518 | UAA/GAN Not in a motif group | geometric IL_5TBW_063 IL_89002.2 | |
| IL_6SKG_128 | 1/BA/1494:1496, 1/BA/1506:1509 | No text annotation Not in a motif group | homologous IL_4V9F_053 IL_46796.1 | |
| IL_6SKG_129 | 1/BA/1524:1526, 1/BA/1537:1539 | No text annotation Not in a motif group | geometric IL_4LFB_010 IL_95997.1 | |
| IL_6SKG_130 | 1/BA/1550:1553, 1/BA/1731:1735 | tSH-tHW Not in a motif group | geometric IL_7RQB_057 IL_04059.1 | |
| IL_6SKG_131 | 1/BA/1590:1593, 1/BA/1697:1701 | tSH-tHW Not in a motif group | geometric IL_7RQB_057 IL_04059.1 | |
| IL_6SKG_132 | 1/BA/1616:1620, 1/BA/1668:1673 | No text annotation Not in a motif group | geometric IL_5TBW_071 IL_69313.1 | |
| IL_6SKG_133 | 1/BA/1623:1628, 1/BA/1660:1665 | No text annotation Not in a motif group | ||
| IL_6SKG_134 | 1/BA/1633:1639, 1/BA/1649:1655 | No text annotation Not in a motif group | ||
| IL_6SKG_135 | 1/BA/1798:1804, 1/BA/2117:2119 | No text annotation Not in a motif group | ||
| IL_6SKG_136 | 1/BA/1811:1813, 1/BA/2108:2110 | Isolated tWW turn Not in a motif group | homologous IL_4V9F_060 IL_54997.7 | |
| IL_6SKG_137 | 1/BA/1813:1817, 1/BA/2106:2108 | No text annotation Not in a motif group | geometric IL_5J7L_332 IL_56105.1 | |
| IL_6SKG_138 | 1/BA/1817:1822, 1/BA/2103:2106 | Intercalated tWH Not in a motif group | homologous IL_4V9F_062 IL_82842.2 | |
| IL_6SKG_139 | 1/BA/1834:1839, 1/BA/1844:1850 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_4V9F_063 IL_65969.2 | |
| IL_6SKG_140 | 1/BA/1892:1894, 1/BA/2099:2101 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_6SKG_141 | 1/BA/1898:1899, 1/BA/2093:2095 | Single bulged A Not in a motif group | homologous IL_4V9F_064 IL_37497.2 | |
| IL_6SKG_142 | 1/BA/1921:1923, 1/BA/1952:1954 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_032 IL_51629.2 | |
| IL_6SKG_143 | 1/BA/1926:1931, 1/BA/1942:1949 | No text annotation Not in a motif group | ||
| IL_6SKG_144 | 1/BA/1964:1968, 1/BA/2015:2017 | No text annotation Not in a motif group | ||
| IL_6SKG_145 | 1/BA/1968:1970, 1/BA/2011:2015 | No text annotation Not in a motif group | ||
| IL_6SKG_146 | 1/BA/1970:1972, 1/BA/2009:2011 | CC cWW Not in a motif group | geometric IL_4E59_001 IL_95997.1 | |
| IL_6SKG_147 | 1/BA/1974:1978, 1/BA/2005:2007 | No text annotation Not in a motif group | ||
| IL_6SKG_148 | 1/BA/1979:1983, 1/BA/2000:2004 | UAA/GAN with extra pair Not in a motif group | geometric IL_7RQB_074 IL_90318.1 | |
| IL_6SKG_149 | 1/BA/2061:2063, 1/BA/2069:2071 | No text annotation Not in a motif group | geometric IL_4WF9_020 IL_95997.1 | |
| IL_6SKG_150 | 1/BA/2155:2157, 1/BA/2727:2729 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_6SKG_151 | 1/BA/2162:2164, 1/BA/2721:2722 | Major groove platform Not in a motif group | geometric IL_4LFB_024 IL_27635.1 | |
| IL_6SKG_152 | 1/BA/2179:2181, 1/BA/2546:2547 | Single bulged U Not in a motif group | homologous IL_4V9F_074 IL_83039.13 | |
| IL_6SKG_153 | 1/BA/2181:2184, 1/BA/2541:2546 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_6SKG_154 | 1/BA/2193:2195, 1/BA/2338:2341 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4V9F_076 IL_38958.7 | |
| IL_6SKG_155 | 1/BA/2214:2217, 1/BA/2297:2299 | No text annotation Not in a motif group | ||
| IL_6SKG_156 | 1/BA/2217:2218, 1/BA/2295:2297 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_6SKG_157 | 1/BA/2218:2220, 1/BA/2294:2295 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6SKG_158 | 1/BA/2220:2222, 1/BA/2291:2294 | No text annotation Not in a motif group | ||
| IL_6SKG_159 | 1/BA/2222:2232, 1/BA/2290:2291 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
| IL_6SKG_160 | 1/BA/2236:2239, 1/BA/2273:2286 | No text annotation Not in a motif group | ||
| IL_6SKG_161 | 1/BA/2241:2251, 1/BA/2264:2271 | No text annotation Not in a motif group | ||
| IL_6SKG_162 | 1/BA/2252:2254, 1/BA/2262:2263 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_6SKG_163 | 1/BA/2348:2349, 1/BA/2359:2361 | Single bulged A Not in a motif group | homologous IL_4V9F_079 IL_37497.2 | |
| IL_6SKG_164 | 1/BA/2400:2402, 1/BA/2420:2424 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5TBW_099 IL_38958.7 | |
| IL_6SKG_165 | 1/BA/2448:2450, 1/BA/2476:2477 | Single bulged A Not in a motif group | geometric IL_5TBW_013 IL_37497.2 | |
| IL_6SKG_166 | 1/BA/2456:2458, 1/BA/2468:2470 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_6SKG_167 | 1/BA/2505:2507, 1/BA/2523:2524 | Single stack bend Not in a motif group | homologous IL_4V9F_081 IL_76488.2 | |
| IL_6SKG_168 | 1/BA/2508:2510, 1/BA/2520:2522 | No text annotation Not in a motif group | geometric IL_353D_001 IL_95997.1 | |
| IL_6SKG_169 | 1/BA/2558:2560, 1/BA/2599:2602 | No text annotation Not in a motif group | geometric IL_6DME_003 IL_63450.2 | |
| IL_6SKG_170 | 1/BA/2561:2563, 1/BA/2597:2598 | Major groove platform Not in a motif group | homologous IL_4V9F_083 IL_76223.2 | |
| IL_6SKG_171 | 1/BA/2563:2565, 1/BA/2593:2597 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_4V9F_084 IL_92788.2 | |
| IL_6SKG_172 | 1/BA/2570:2574, 1/BA/2584:2588 | Triple sheared Not in a motif group | homologous IL_4V9F_085 IL_56467.8 | |
| IL_6SKG_173 | 1/BA/2611:2612, 1/BA/2684:2686 | Major groove platform Not in a motif group | homologous IL_4V9F_086 IL_76223.2 | |
| IL_6SKG_174 | 1/BA/2614:2616, 1/BA/2678:2682 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4V9F_087 IL_90933.2 | |
| IL_6SKG_175 | 1/BA/2616:2617, 1/BA/2675:2678 | Multiple bulged bases Not in a motif group | geometric IL_4V9F_088 IL_71530.2 | |
| IL_6SKG_176 | 1/BA/2619:2621, 1/BA/2671:2673 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_6SKG_177 | 1/BA/2626:2627, 1/BA/2644:2647 | Minor groove platform with intercalation Not in a motif group | homologous IL_4V9F_089 IL_95601.3 | |
| IL_6SKG_178 | 1/BA/2628:2630, 1/BA/2641:2643 | No text annotation Not in a motif group | geometric IL_5C5W_002 IL_95997.1 | |
| IL_6SKG_179 | 1/BA/2630:2632, 1/BA/2639:2641 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_6SKG_180 | 1/BA/2695:2696, 1/BA/2705:2707 | Single bulged A Not in a motif group | geometric IL_1I9X_002 IL_37497.2 | |
| IL_6SKG_181 | 1/BA/2740:2744, 1/BA/2876:2884 | No text annotation Not in a motif group | homologous IL_4V9F_091 IL_04638.1 | |
| IL_6SKG_182 | 1/BA/2744:2746, 1/BA/2874:2876 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_6SKG_183 | 1/BA/2756:2763, 1/BA/2768:2774 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_6SKG_184 | 1/BA/2785:2789, 1/BA/2828:2830 | C-loop Not in a motif group | homologous IL_4V9F_093 IL_63596.6 | |
| IL_6SKG_185 | 1/BA/2792:2796, 1/BA/2821:2825 | UAA/GAN Not in a motif group | homologous IL_4V9F_094 IL_07235.1 | |
| IL_6SKG_186 | 1/BA/2800:2801, 1/BA/2814:2817 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_349 IL_71530.2 | |
| IL_6SKG_187 | 1/BA/2837:2839, 1/BA/2869:2871 | CC cWW Not in a motif group | geometric IL_4E59_001 IL_95997.1 | |
| IL_6SKG_188 | 1/BA/2839:2844, 1/BA/2864:2869 | UAA/GAN with extra cWW Not in a motif group | homologous IL_4V9F_096 IL_49767.5 | |
| IL_6SKG_189 | 1/BA/2964:2965, 1/BA/3012:3014 | Major groove intercalation Not in a motif group | geometric IL_5J7L_352 IL_16396.2 | |
| IL_6SKG_190 | 1/BA/2966:2968, 1/BA/3009:3011 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_6SKG_191 | 1/BA/2969:2970, 1/BA/3006:3008 | Single bulged A Not in a motif group | homologous IL_4V9F_098 IL_37497.2 | |
| IL_6SKG_192 | 1/BA/2973:2978, 1/BA/2999:3003 | No text annotation Not in a motif group | homologous IL_4V9F_099 IL_83162.5 | |
| IL_6SKG_193 | 1/BA/2982:2985, 1/BA/2992:2995 | Double sheared Not in a motif group | homologous IL_4V9F_100 IL_09705.9 | |
| IL_6SKG_194 | 1/BB/2:5, 1/BB/121:123 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_6SKG_195 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.2 | |
| IL_6SKG_196 | 1/BB/23:29, 1/BB/55:60 | No text annotation Not in a motif group | ||
| IL_6SKG_197 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V9F_103 IL_09061.6 | |
| IL_6SKG_198 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_4V9F_104 IL_58103.6 | |
| IL_6SKG_199 | 1/BB/76:82, 1/BB/102:107 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4V9F_106 IL_76042.2 | |
| IL_6SKG_200 | 1/BB/87:89, 1/BB/96:97 | Single bulged U Not in a motif group | homologous IL_4V9F_107 IL_83039.13 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6SKG_046 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6SKG_001 | 1/Aa/41:48, 1/Aa/347:357, 1/Aa/380:383 | No text annotation Not in a motif group | ||
| J3_6SKG_002 | 1/Aa/531:533, 1/Aa/597:600, 1/Aa/700:701 | No text annotation Not in a motif group | ||
| J3_6SKG_003 | 1/Aa/618:619, 1/Aa/663:671, 1/Aa/678:680 | No text annotation Not in a motif group | ||
| J3_6SKG_004 | 1/Aa/772:775, 1/Aa/807:811, 1/Aa/818:824 | No text annotation Not in a motif group | ||
| J3_6SKG_005 | 1/Aa/894:897, 1/Aa/1187:1189, 1/Aa/1289:1292 | No text annotation Not in a motif group | ||
| J3_6SKG_006 | 1/Aa/941:946, 1/Aa/986:991, 1/Aa/1162:1167 | No text annotation Not in a motif group | ||
| J3_6SKG_007 | 1/Aa/1005:1012, 1/Aa/1051:1056, 1/Aa/1140:1147 | No text annotation Not in a motif group | ||
| J3_6SKG_008 | 1/Aa/1017:1019, 1/Aa/1026:1030, 1/Aa/1043:1046 | No text annotation Not in a motif group | ||
| J3_6SKG_009 | 1/Aa/1060:1063, 1/Aa/1106:1110, 1/Aa/1133:1136 | No text annotation Not in a motif group | ||
| J3_6SKG_010 | 1/Aa/1189:1193, 1/Aa/1248:1255, 1/Aa/1286:1289 | No text annotation Not in a motif group | ||
| J3_6SKG_011 | 1/BA/39:40, 1/BA/513:520, 1/BA/546:547 | No text annotation Not in a motif group | ||
| J3_6SKG_012 | 1/BA/64:67, 1/BA/78:85, 1/BA/118:123 | No text annotation Not in a motif group | ||
| J3_6SKG_013 | 1/BA/302:304, 1/BA/411:417, 1/BA/438:443 | No text annotation Not in a motif group | ||
| J3_6SKG_014 | 1/BA/809:815, 1/BA/901:903, 1/BA/919:922 | No text annotation Not in a motif group | homologous J3_4V9F_002 NA | |
| J3_6SKG_015 | 1/BA/824:826, 1/BA/858:863, 1/BA/888:891 | No text annotation Not in a motif group | ||
| J3_6SKG_016 | 1/BA/1434:1439, 1/BA/1771:1773, 1/BA/1785:1788 | No text annotation Not in a motif group | ||
| J3_6SKG_017 | 1/BA/1441:1445, 1/BA/1750:1756, 1/BA/1765:1769 | No text annotation Not in a motif group | ||
| J3_6SKG_018 | 1/BA/1553:1556, 1/BA/1565:1569, 1/BA/1728:1731 | No text annotation Not in a motif group | ||
| J3_6SKG_019 | 1/BA/2203:2205, 1/BA/2308:2312, 1/BA/2325:2330 | No text annotation Not in a motif group | ||
| J3_6SKG_020 | 1/BA/2385:2387, 1/BA/2490:2503, 1/BA/2526:2533 | No text annotation Not in a motif group | ||
| J3_6SKG_021 | 1/BA/2398:2400, 1/BA/2424:2426, 1/BA/2435:2440 | No text annotation Not in a motif group | ||
| J3_6SKG_022 | 1/BA/2621:2624, 1/BA/2649:2652, 1/BA/2664:2671 | No text annotation Not in a motif group | homologous J3_4V9F_009 NA | |
| J3_6SKG_023 | 1/BA/2940:2941, 1/BA/2957:2962, 1/BA/3016:3020 | No text annotation Not in a motif group | ||
| J3_6SKG_024 | 1/BB/11:16, 1/BB/68:71, 1/BB/112:115 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: