6SKG Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6SKG_101 | 1/Aa/7:17 | No text annotation | ||
| HL_6SKG_002 | 1/Aa/138:143 | No text annotation | ||
| HL_6SKG_003 | 1/Aa/173:180 | No text annotation | ||
| HL_6SKG_005 | 1/Aa/247:255 | No text annotation | ||
| HL_6SKG_006 | 1/Aa/284:289 | No text annotation | ||
| HL_6SKG_007 | 1/Aa/308:321 | No text annotation | ||
| HL_6SKG_008 | 1/Aa/330:335 | No text annotation | ||
| HL_6SKG_009 | 1/Aa/367:372 | No text annotation | ||
| HL_6SKG_011 | 1/Aa/423:431 | No text annotation | ||
| HL_6SKG_012 | 1/Aa/467:472 | No text annotation | ||
| HL_6SKG_013 | 1/Aa/562:568 | No text annotation | ||
| HL_6SKG_014 | 1/Aa/635:644 | No text annotation | ||
| HL_6SKG_102 | 1/Aa/672:677 | No text annotation | ||
| HL_6SKG_016 | 1/Aa/732:742 | No text annotation | ||
| HL_6SKG_017 | 1/Aa/788:794 | No text annotation | ||
| HL_6SKG_018 | 1/Aa/812:817 | No text annotation | ||
| HL_6SKG_103 | 1/Aa/847:852 | No text annotation | ||
| HL_6SKG_104 | 1/Aa/914:923 | No text annotation | ||
| HL_6SKG_020 | 1/Aa/964:970 | No text annotation | ||
| HL_6SKG_105 | 1/Aa/1020:1025 | No text annotation | ||
| HL_6SKG_022 | 1/Aa/1033:1040 | No text annotation | ||
| HL_6SKG_023 | 1/Aa/1083:1087 | No text annotation | ||
| HL_6SKG_024 | 1/Aa/1117:1123 | No text annotation | ||
| HL_6SKG_025 | 1/Aa/1217:1222 | No text annotation | ||
| HL_6SKG_106 | 1/Aa/1266:1275 | No text annotation | ||
| HL_6SKG_027 | 1/Aa/1309:1317 | No text annotation | ||
| HL_6SKG_028 | 1/Aa/1399:1402 | No text annotation | ||
| HL_6SKG_029 | 1/Aa/1464:1469 | No text annotation | ||
| HL_6SKG_030 | 1/BA/68:77 | Pseudoknot with intercalation | homologous HL_4V9F_001 HL_93438.2 | |
| HL_6SKG_031 | 1/BA/96:104 | Pseudoknot geometry | homologous HL_4V9F_002 HL_93324.4 | |
| HL_6SKG_032 | 1/BA/131:136 | No text annotation | homologous HL_4V9F_003 HL_75660.5 | |
| HL_6SKG_034 | 1/BA/158:163 | No text annotation | homologous HL_4V9F_005 HL_87954.2 | |
| HL_6SKG_035 | 1/BA/185:192 | No text annotation | homologous HL_4V9F_006 HL_30068.2 | |
| HL_6SKG_036 | 1/BA/216:221 | No text annotation | geometric HL_4WF9_007 HL_53890.2 | |
| HL_6SKG_037 | 1/BA/237:243 | No text annotation | homologous HL_4V9F_008 HL_37369.2 | |
| HL_6SKG_038 | 1/BA/277:282 | GNRA | homologous HL_4V9F_009 HL_37824.7 | |
| HL_6SKG_039 | 1/BA/344:351 | T-loop with 2 stacked bulged bases | homologous HL_4V9F_010 HL_01609.3 | |
| HL_6SKG_040 | 1/BA/358:362 | No text annotation | homologous HL_4V9F_011 HL_75660.5 | |
| HL_6SKG_041 | 1/BA/366:374 | T-loop with unstacked turn | geometric HL_5J7L_144 HL_27670.2 | |
| HL_6SKG_042 | 1/BA/423:432 | No text annotation | homologous HL_4V9F_013 HL_87463.1 | |
| HL_6SKG_043 | 1/BA/449:457 | Pseudoknot geometry | homologous HL_4V9F_014 HL_93324.4 | |
| HL_6SKG_044 | 1/BA/501:506 | GNRA | homologous HL_4V9F_015 HL_37824.7 | |
| HL_6SKG_045 | 1/BA/526:531 | GNRA with GA tSW pair | geometric HL_4ZT0_006 NA | |
| HL_6SKG_046 | 1/BA/611:616 | GNRA | homologous HL_4V9F_017 HL_37824.7 | |
| HL_6SKG_107 | 1/BA/657:666 | T-loop with 2 stacked bulged bases | homologous HL_4V9F_018 HL_28252.6 | |
| HL_6SKG_048 | 1/BA/704:710 | No text annotation | homologous HL_4V9F_019 HL_80922.2 | |
| HL_6SKG_049 | 1/BA/724:729 | GNRA | homologous HL_4V9F_020 HL_37824.7 | |
| HL_6SKG_051 | 1/BA/768:773 | GNRA | homologous HL_4V9F_022 HL_37824.7 | |
| HL_6SKG_052 | 1/BA/839:844 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6SKG_108 | 1/BA/872:881 | No text annotation | homologous HL_4V9F_024 HL_88205.2 | |
| HL_6SKG_054 | 1/BA/907:913 | No text annotation | homologous HL_4V9F_025 HL_87954.2 | |
| HL_6SKG_055 | 1/BA/954:959 | No text annotation | homologous HL_4V9F_026 HL_55195.3 | |
| HL_6SKG_056 | 1/BA/1015:1023 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6SKG_057 | 1/BA/1085:1090 | GNRA | homologous HL_4V9F_028 HL_37824.7 | |
| HL_6SKG_058 | 1/BA/1106:1113 | No text annotation | homologous HL_4V9F_029 HL_42998.2 | |
| HL_6SKG_059 | 1/BA/1305:1310 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6SKG_060 | 1/BA/1357:1362 | GNRA | homologous HL_4V9F_033 HL_37824.7 | |
| HL_6SKG_061 | 1/BA/1417:1425 | T-loop with 2 stacked bulged bases | homologous HL_4V9F_034 HL_28252.6 | |
| HL_6SKG_062 | 1/BA/1460:1466 | Pseudoknot geometry with 3' bulge | homologous HL_4V9F_035 HL_57176.2 | |
| HL_6SKG_063 | 1/BA/1498:1504 | GNRA | homologous HL_4V9F_036 HL_37824.7 | |
| HL_6SKG_064 | 1/BA/1527:1536 | No text annotation | homologous HL_4V9F_037 HL_81545.2 | |
| HL_6SKG_065 | 1/BA/1558:1563 | GNRA | geometric HL_5TBW_030 NA | |
| HL_6SKG_066 | 1/BA/1604:1610 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6SKG_067 | 1/BA/1641:1647 | Other HL | homologous HL_4V9F_039 HL_77436.5 | |
| HL_6SKG_068 | 1/BA/1679:1686 | No text annotation | ||
| HL_6SKG_069 | 1/BA/1710:1714 | Mini UNCG | homologous HL_4V9F_041 HL_48778.2 | |
| HL_6SKG_070 | 1/BA/1757:1764 | No text annotation | homologous HL_4V9F_042 HL_89567.2 | |
| HL_6SKG_109 | 1/BA/1776:1782 | GNRA | geometric HL_5TBW_042 NA | |
| HL_6SKG_072 | 1/BA/1839:1844 | UNCG | geometric HL_5Y85_004 HL_34617.5 | |
| HL_6SKG_073 | 1/BA/1864:1870 | GNRA | homologous HL_4V9F_045 HL_37824.7 | |
| HL_6SKG_074 | 1/BA/1880:1884 | No text annotation | homologous HL_4V9F_046 HL_80709.3 | |
| HL_6SKG_075 | 1/BA/1905:1915 | No text annotation | homologous HL_4V9F_047 HL_01962.2 | |
| HL_6SKG_076 | 1/BA/1934:1939 | GNRA | homologous HL_4V9F_048 HL_37824.7 | |
| HL_6SKG_110 | 1/BA/1988:1995 | GNRA related | homologous HL_4V9F_049 HL_77436.5 | |
| HL_6SKG_111 | 1/BA/2022:2035 | No text annotation | ||
| HL_6SKG_079 | 1/BA/2063:2069 | Mini UNCG | geometric HL_5T16_002 HL_56334.1 | |
| HL_6SKG_080 | 1/BA/2139:2148 | No text annotation | homologous HL_4V9F_052 HL_61996.2 | |
| HL_6SKG_081 | 1/BA/2255:2261 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_6SKG_082 | 1/BA/2316:2321 | GNRA | homologous HL_4V9F_054 HL_37824.7 | |
| HL_6SKG_083 | 1/BA/2350:2358 | No text annotation | homologous HL_4V9F_055 HL_85367.2 | |
| HL_6SKG_112 | 1/BA/2367:2379 | No text annotation | ||
| HL_6SKG_085 | 1/BA/2406:2416 | No text annotation | ||
| HL_6SKG_113 | 1/BA/2427:2434 | Pseudoknot geometry | homologous HL_4V9F_058 HL_93324.4 | |
| HL_6SKG_087 | 1/BA/2459:2467 | No text annotation | geometric HL_5J7L_185 HL_49922.4 | |
| HL_6SKG_088 | 1/BA/2480:2485 | GNRA | homologous HL_4V9F_060 HL_37824.7 | |
| HL_6SKG_089 | 1/BA/2511:2519 | Pseudoknot geometry | homologous HL_4V9F_061 HL_93324.4 | |
| HL_6SKG_090 | 1/BA/2575:2583 | No text annotation | homologous HL_4V9F_062 HL_32735.2 | |
| HL_6SKG_091 | 1/BA/2632:2639 | No text annotation | homologous HL_4V9F_063 HL_31585.3 | |
| HL_6SKG_092 | 1/BA/2654:2662 | No text annotation | homologous HL_4V9F_064 NA | |
| HL_6SKG_093 | 1/BA/2698:2703 | GNRA | homologous HL_4V9F_065 HL_37824.7 | |
| HL_6SKG_094 | 1/BA/2763:2768 | GNRA | homologous HL_4V9F_066 HL_37824.7 | |
| HL_6SKG_095 | 1/BA/2805:2810 | Ribsomal LSU H95 | homologous HL_4V9F_067 HL_65794.5 | |
| HL_6SKG_096 | 1/BA/2847:2861 | No text annotation | homologous HL_4V9F_068 HL_74055.2 | |
| HL_6SKG_097 | 1/BA/2945:2953 | No text annotation | homologous HL_4V9F_069 HL_64690.6 | |
| HL_6SKG_098 | 1/BA/2986:2991 | GNRA | geometric HL_4V88_218 NA | |
| HL_6SKG_114 | 1/BB/34:48 | No text annotation | homologous HL_4V9F_074 HL_97756.2 | |
| HL_6SKG_099 | 1/BB/38:44 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6SKG_100 | 1/BB/90:95 | GNRA | homologous HL_5TBW_186 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6SKG_001 | No text annotation | ||
| HL_6SKG_004 | No text annotation | ||
| HL_6SKG_010 | No text annotation | ||
| HL_6SKG_015 | No text annotation | ||
| HL_6SKG_019 | No text annotation | ||
| HL_6SKG_021 | No text annotation | ||
| HL_6SKG_026 | No text annotation | ||
| HL_6SKG_033 | No text annotation | ||
| HL_6SKG_047 | No text annotation | ||
| HL_6SKG_050 | No text annotation | ||
| HL_6SKG_053 | No text annotation | ||
| HL_6SKG_071 | GNRA wlth tandem sheared | ||
| HL_6SKG_077 | No text annotation | ||
| HL_6SKG_078 | No text annotation | ||
| HL_6SKG_084 | No text annotation | ||
| HL_6SKG_086 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6SKG_201 | 1/Aa/42:48, 1/Aa/347:349 | No text annotation | ||
| IL_6SKG_003 | 1/Aa/50:52, 1/Aa/344:345 | No text annotation | ||
| IL_6SKG_004 | 1/Aa/59:62, 1/Aa/82:83 | No text annotation | ||
| IL_6SKG_005 | 1/Aa/63:65, 1/Aa/79:81 | No text annotation | ||
| IL_6SKG_202 | 1/Aa/108:111, 1/Aa/219:220 | No text annotation | ||
| IL_6SKG_203 | 1/Aa/112:116, 1/Aa/215:218 | No text annotation | ||
| IL_6SKG_008 | 1/Aa/128:133, 1/Aa/148:154 | No text annotation | ||
| IL_6SKG_010 | 1/Aa/170:172, 1/Aa/181:182 | No text annotation | ||
| IL_6SKG_012 | 1/Aa/230:235, 1/Aa/265:272 | No text annotation | ||
| IL_6SKG_013 | 1/Aa/237:240, 1/Aa/262:263 | No text annotation | ||
| IL_6SKG_014 | 1/Aa/280:281, 1/Aa/292:296 | No text annotation | ||
| IL_6SKG_204 | 1/Aa/355:357, 1/Aa/380:381 | No text annotation | ||
| IL_6SKG_015 | 1/Aa/359:363, 1/Aa/377:378 | No text annotation | ||
| IL_6SKG_016 | 1/Aa/363:364, 1/Aa/375:377 | No text annotation | ||
| IL_6SKG_018 | 1/Aa/448:455, 1/Aa/485:486 | No text annotation | ||
| IL_6SKG_205 | 1/Aa/455:457, 1/Aa/484:485 | No text annotation | ||
| IL_6SKG_206 | 1/Aa/460:466, 1/Aa/473:481 | No text annotation | ||
| IL_6SKG_021 | 1/Aa/514:520, 1/Aa/830:831 | No text annotation | ||
| IL_6SKG_022 | 1/Aa/525:529, 1/Aa/703:707 | No text annotation | ||
| IL_6SKG_023 | 1/Aa/539:541, 1/Aa/590:591 | No text annotation | ||
| IL_6SKG_024 | 1/Aa/542:543, 1/Aa/586:589 | No text annotation | ||
| IL_6SKG_235 | 1/Aa/550:555, 1/Aa/575:579 | No text annotation | ||
| IL_6SKG_026 | 1/Aa/600:601, 1/Aa/697:700 | No text annotation | ||
| IL_6SKG_027 | 1/Aa/603:604, 1/Aa/693:695 | No text annotation | ||
| IL_6SKG_028 | 1/Aa/606:612, 1/Aa/686:691 | No text annotation | ||
| IL_6SKG_208 | 1/Aa/620:623, 1/Aa/659:662 | No text annotation | ||
| IL_6SKG_032 | 1/Aa/630:634, 1/Aa/645:652 | No text annotation | ||
| IL_6SKG_034 | 1/Aa/720:724, 1/Aa/750:751 | No text annotation | ||
| IL_6SKG_035 | 1/Aa/725:729, 1/Aa/745:749 | No text annotation | ||
| IL_6SKG_037 | 1/Aa/837:844, 1/Aa/855:860 | No text annotation | ||
| IL_6SKG_039 | 1/Aa/872:873, 1/Aa/1345:1347 | No text annotation | ||
| IL_6SKG_040 | 1/Aa/875:877, 1/Aa/1342:1343 | No text annotation | ||
| IL_6SKG_041 | 1/Aa/883:886, 1/Aa/1332:1336 | No text annotation | ||
| IL_6SKG_044 | 1/Aa/904:905, 1/Aa/1178:1180 | No text annotation | ||
| IL_6SKG_045 | 1/Aa/906:935, 1/Aa/1173:1177 | No text annotation | ||
| IL_6SKG_047 | 1/Aa/959:961, 1/Aa/973:975 | No text annotation | ||
| IL_6SKG_209 | 1/Aa/992:994, 1/Aa/1160:1161 | No text annotation | ||
| IL_6SKG_210 | 1/Aa/996:1000, 1/Aa/1156:1158 | No text annotation | ||
| IL_6SKG_211 | 1/Aa/1001:1002, 1/Aa/1151:1155 | No text annotation | ||
| IL_6SKG_212 | 1/Aa/1004:1005, 1/Aa/1147:1149 | No text annotation | ||
| IL_6SKG_052 | 1/Aa/1068:1071, 1/Aa/1097:1101 | No text annotation | ||
| IL_6SKG_236 | 1/Aa/1073:1076, 1/Aa/1094:1095 | No text annotation | ||
| IL_6SKG_054 | 1/Aa/1110:1113, 1/Aa/1127:1133 | No text annotation | ||
| IL_6SKG_055 | 1/Aa/1199:1205, 1/Aa/1236:1242 | No text annotation | ||
| IL_6SKG_056 | 1/Aa/1207:1210, 1/Aa/1229:1234 | No text annotation | ||
| IL_6SKG_057 | 1/Aa/1211:1214, 1/Aa/1225:1228 | No text annotation | ||
| IL_6SKG_059 | 1/Aa/1255:1260, 1/Aa/1281:1286 | No text annotation | ||
| IL_6SKG_061 | 1/Aa/1351:1353, 1/Aa/1450:1453 | No text annotation | ||
| IL_6SKG_062 | 1/Aa/1353:1356, 1/Aa/1446:1450 | No text annotation | ||
| IL_6SKG_063 | 1/Aa/1357:1359, 1/Aa/1443:1445 | No text annotation | ||
| IL_6SKG_213 | 1/Aa/1359:1361, 1/Aa/1440:1443 | No text annotation | ||
| IL_6SKG_065 | 1/Aa/1364:1366, 1/Aa/1435:1437 | No text annotation | ||
| IL_6SKG_066 | 1/Aa/1368:1371, 1/Aa/1430:1433 | No text annotation | ||
| IL_6SKG_067 | 1/Aa/1372:1374, 1/Aa/1428:1429 | No text annotation | ||
| IL_6SKG_214 | 1/Aa/1374:1375, 1/Aa/1426:1428 | No text annotation | ||
| IL_6SKG_069 | 1/Aa/1383:1386, 1/Aa/1415:1418 | No text annotation | ||
| IL_6SKG_071 | 1/BA/33:39, 1/BA/547:553 | Triple sheared with non-canonical cWW | homologous IL_4V9F_001 IL_04021.2 | |
| IL_6SKG_072 | 1/BA/45:46, 1/BA/481:483 | Single bulged A | homologous IL_4V9F_002 IL_31462.5 | |
| IL_6SKG_073 | 1/BA/50:52, 1/BA/476:477 | Major groove platform | geometric IL_1G1X_002 IL_48076.6 | |
| IL_6SKG_074 | 1/BA/52:53, 1/BA/474:476 | Minor groove platform related | geometric IL_3K0J_002 IL_51454.2 | |
| IL_6SKG_075 | 1/BA/90:94, 1/BA/106:113 | Kink-turn | homologous IL_4V9F_004 IL_01488.3 | |
| IL_6SKG_076 | 1/BA/174:175, 1/BA/203:205 | Single stack bend | homologous IL_4V9F_005 IL_90729.1 | |
| IL_6SKG_077 | 1/BA/179:185, 1/BA/192:199 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_04346.10 | |
| IL_6SKG_078 | 1/BA/230:236, 1/BA/244:249 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_4V9F_007 IL_26307.2 | |
| IL_6SKG_079 | 1/BA/265:268, 1/BA/295:296 | Major groove platform; stack outside cWW | geometric IL_4V9F_008 IL_50694.7 | |
| IL_6SKG_215 | 1/BA/265:269, 1/BA/290:296 | Kink-turn with embedded cWW pair | homologous IL_4V9F_108 IL_33886.1 | |
| IL_6SKG_080 | 1/BA/268:269, 1/BA/290:295 | No text annotation | homologous IL_4V9F_009 IL_92634.2 | |
| IL_6SKG_082 | 1/BA/307:308, 1/BA/406:408 | Single bulged U | geometric IL_6UFG_004 IL_89505.4 | |
| IL_6SKG_083 | 1/BA/308:309, 1/BA/404:406 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6SKG_084 | 1/BA/312:315, 1/BA/400:401 | No text annotation | ||
| IL_6SKG_085 | 1/BA/320:322, 1/BA/393:395 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 IL_87907.2 | |
| IL_6SKG_086 | 1/BA/322:324, 1/BA/392:393 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_6SKG_087 | 1/BA/329:333, 1/BA/382:387 | No text annotation | ||
| IL_6SKG_088 | 1/BA/339:341, 1/BA/354:355 | Single bulged U | homologous IL_4V9F_013 IL_89505.4 | |
| IL_6SKG_091 | 1/BA/520:523, 1/BA/534:546 | No text annotation | geometric IL_4WF9_015 IL_81516.2 | |
| IL_6SKG_216 | 1/BA/579:584, 1/BA/640:642 | No text annotation | geometric IL_7ELQ_002 IL_07785.1 | |
| IL_6SKG_093 | 1/BA/585:592, 1/BA/635:639 | Kink-turn | geometric IL_5G4U_006 NA | |
| IL_6SKG_094 | 1/BA/598:602, 1/BA/626:629 | UAA/GAN variation | geometric IL_5J7L_303 IL_23774.1 | |
| IL_6SKG_095 | 1/BA/602:607, 1/BA/620:626 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_4V9F_019 IL_16458.4 | |
| IL_6SKG_097 | 1/BA/697:701, 1/BA/713:717 | AAA cross-strand stack | homologous IL_4V9F_020 IL_66798.2 | |
| IL_6SKG_098 | 1/BA/733:736, 1/BA/761:762 | Multiple bulged bases | homologous IL_4V9F_021 IL_82107.4 | |
| IL_6SKG_099 | 1/BA/739:743, 1/BA/754:758 | tSH-tHW-tHS | homologous IL_4V9F_022 IL_17136.7 | |
| IL_6SKG_217 | 1/BA/798:800, 1/BA/934:936 | Isolated non-canonical cWW pair | homologous IL_4V9F_023 IL_87907.2 | |
| IL_6SKG_218 | 1/BA/800:804, 1/BA/927:934 | tHW-tHW cross-strand stack | homologous IL_4V9F_024 IL_54041.2 | |
| IL_6SKG_101 | 1/BA/823:824, 1/BA/891:893 | Single bulged A | homologous IL_4V9F_025 IL_31462.5 | |
| IL_6SKG_219 | 1/BA/828:829, 1/BA/854:856 | Single bulged G | homologous IL_4V9F_026 IL_00225.13 | |
| IL_6SKG_220 | 1/BA/829:833, 1/BA/850:854 | Triple sheared | homologous IL_4V9F_027 IL_50730.2 | |
| IL_6SKG_103 | 1/BA/865:868, 1/BA/884:886 | Major groove platform with extra cWW | homologous IL_4V9F_028 IL_51387.2 | |
| IL_6SKG_221 | 1/BA/869:871, 1/BA/882:883 | Single bulged U | homologous IL_4V9F_029 IL_89505.4 | |
| IL_6SKG_104 | 1/BA/903:905, 1/BA/915:919 | Multiple bulged bases | geometric IL_4V9F_030 IL_57881.1 | |
| IL_6SKG_106 | 1/BA/965:966, 1/BA/1071:1073 | Single stack bend | geometric IL_7A0S_022 IL_90729.1 | |
| IL_6SKG_107 | 1/BA/971:975, 1/BA/1059:1066 | Kink-turn | homologous IL_4V9F_031 IL_94910.1 | |
| IL_6SKG_108 | 1/BA/977:979, 1/BA/1056:1057 | Single bulged A | homologous IL_4V9F_032 IL_31462.5 | |
| IL_6SKG_109 | 1/BA/987:991, 1/BA/1044:1048 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_4V9F_033 IL_38862.4 | |
| IL_6SKG_110 | 1/BA/991:992, 1/BA/1042:1044 | Minor groove platform | geometric IL_4V9F_034 IL_51454.2 | |
| IL_6SKG_111 | 1/BA/993:997, 1/BA/1038:1041 | C-loop | geometric IL_4WF9_033 IL_26222.2 | |
| IL_6SKG_112 | 1/BA/999:1002, 1/BA/1033:1036 | No text annotation | homologous IL_4V9F_036 IL_02203.1 | |
| IL_6SKG_113 | 1/BA/1007:1012, 1/BA/1026:1028 | No text annotation | ||
| IL_6SKG_114 | 1/BA/1079:1080, 1/BA/1095:1097 | Major groove platform | geometric IL_4V9F_082 IL_48076.6 | |
| IL_6SKG_115 | 1/BA/1125:1129, 1/BA/1285:1289 | UAA/GAN | homologous IL_4V9F_037 IL_38507.2 | |
| IL_6SKG_116 | 1/BA/1131:1138, 1/BA/1282:1283 | SSU/LSU pseudoknot | homologous IL_4V9F_038 IL_41203.4 | |
| IL_6SKG_117 | 1/BA/1138:1140, 1/BA/1281:1282 | Single bulged U | geometric IL_4V9F_039 IL_89505.4 | |
| IL_6SKG_118 | 1/BA/1145:1151, 1/BA/1271:1276 | Kink-turn related | homologous IL_4V9F_040 IL_57188.5 | |
| IL_6SKG_223 | 1/BA/1152:1162, 1/BA/1256:1270 | No text annotation | ||
| IL_6SKG_119 | 1/BA/1164:1166, 1/BA/1253:1254 | Single bulged G | homologous IL_4V9F_041 IL_00225.13 | |
| IL_6SKG_120 | 1/BA/1175:1186, 1/BA/1236:1244 | No text annotation | ||
| IL_6SKG_121 | 1/BA/1297:1298, 1/BA/1317:1320 | Bulged stacked bases | homologous IL_4V9F_045 IL_76709.2 | |
| IL_6SKG_122 | 1/BA/1332:1334, 1/BA/1382:1385 | Isolated cWS basepair | homologous IL_4V9F_046 IL_42997.3 | |
| IL_6SKG_123 | 1/BA/1343:1350, 1/BA/1369:1373 | Kink-turn | homologous IL_4V9F_048 IL_70923.9 | |
| IL_6SKG_224 | 1/BA/1398:1404, 1/BA/2124:2129 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_4V9F_049 IL_26307.2 | |
| IL_6SKG_125 | 1/BA/1446:1449, 1/BA/1748:1749 | Major groove platform; stack outside cWW | homologous IL_4V9F_050 IL_50694.7 | |
| IL_6SKG_126 | 1/BA/1455:1459, 1/BA/1467:1469 | C-loop | homologous IL_4V9F_051 IL_63596.11 | |
| IL_6SKG_127 | 1/BA/1486:1490, 1/BA/1513:1518 | UAA/GAN | geometric IL_5TBW_063 NA | |
| IL_6SKG_225 | 1/BA/1495:1496, 1/BA/1506:1508 | Single stack bend with bulge | geometric IL_5TBW_101 NA | |
| IL_6SKG_130 | 1/BA/1550:1553, 1/BA/1731:1735 | tSH-tHW | geometric IL_7RQB_057 NA | |
| IL_6SKG_131 | 1/BA/1590:1593, 1/BA/1697:1701 | tSH-tHW | geometric IL_7RQB_057 NA | |
| IL_6SKG_132 | 1/BA/1616:1620, 1/BA/1668:1673 | No text annotation | geometric IL_5TBW_071 NA | |
| IL_6SKG_133 | 1/BA/1623:1628, 1/BA/1660:1665 | No text annotation | ||
| IL_6SKG_134 | 1/BA/1633:1639, 1/BA/1649:1655 | No text annotation | ||
| IL_6SKG_135 | 1/BA/1798:1804, 1/BA/2117:2119 | No text annotation | ||
| IL_6SKG_136 | 1/BA/1811:1813, 1/BA/2108:2110 | Isolated tWW turn | homologous IL_4V9F_060 IL_67095.2 | |
| IL_6SKG_226 | 1/BA/1814:1817, 1/BA/2106:2107 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_6SKG_227 | 1/BA/1814:1822, 1/BA/2103:2107 | No text annotation | homologous IL_4V9F_111 IL_22854.4 | |
| IL_6SKG_138 | 1/BA/1817:1822, 1/BA/2103:2106 | Intercalated tWH | homologous IL_4V9F_062 IL_76758.2 | |
| IL_6SKG_139 | 1/BA/1834:1839, 1/BA/1844:1850 | tSH-tSH-tHH-tHS | homologous IL_4V9F_063 IL_47346.2 | |
| IL_6SKG_141 | 1/BA/1898:1899, 1/BA/2093:2095 | Single bulged A | homologous IL_4V9F_064 IL_31462.5 | |
| IL_6SKG_143 | 1/BA/1926:1931, 1/BA/1942:1949 | No text annotation | ||
| IL_6SKG_228 | 1/BA/1965:1968, 1/BA/2015:2016 | Minor groove platform, major groove intercalation | homologous IL_4V9F_066 IL_95583.2 | |
| IL_6SKG_229 | 1/BA/1969:1970, 1/BA/2011:2014 | Major groove intercalation | homologous IL_4V9F_067 IL_82107.4 | |
| IL_6SKG_147 | 1/BA/1974:1978, 1/BA/2005:2007 | No text annotation | geometric IL_2OEU_001 IL_46387.1 | |
| IL_6SKG_148 | 1/BA/1979:1983, 1/BA/2000:2004 | UAA/GAN with extra pair | geometric IL_7RQB_074 NA | |
| IL_6SKG_230 | 1/BA/2047:2058, 1/BA/2074:2077 | No text annotation | ||
| IL_6SKG_151 | 1/BA/2162:2164, 1/BA/2721:2722 | Major groove platform | geometric IL_4LFB_024 IL_48076.6 | |
| IL_6SKG_231 | 1/BA/2166:2168, 1/BA/2716:2719 | No text annotation | homologous IL_4V9F_073 IL_83389.2 | |
| IL_6SKG_152 | 1/BA/2179:2181, 1/BA/2546:2547 | Single bulged U | homologous IL_4V9F_074 IL_89505.4 | |
| IL_6SKG_232 | 1/BA/2182:2183, 1/BA/2542:2545 | Minor groove platform | homologous IL_4V9F_075 IL_51454.2 | |
| IL_6SKG_154 | 1/BA/2193:2195, 1/BA/2338:2341 | Isolated tHS basepair with bulges | homologous IL_4V9F_076 IL_85599.2 | |
| IL_6SKG_155 | 1/BA/2214:2217, 1/BA/2297:2299 | No text annotation | ||
| IL_6SKG_156 | 1/BA/2217:2218, 1/BA/2295:2297 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_6SKG_157 | 1/BA/2218:2220, 1/BA/2294:2295 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6SKG_158 | 1/BA/2220:2222, 1/BA/2291:2294 | No text annotation | ||
| IL_6SKG_159 | 1/BA/2222:2232, 1/BA/2290:2291 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_6SKG_160 | 1/BA/2236:2239, 1/BA/2273:2286 | No text annotation | ||
| IL_6SKG_237 | 1/BA/2241:2250, 1/BA/2265:2271 | No text annotation | ||
| IL_6SKG_162 | 1/BA/2252:2254, 1/BA/2262:2263 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_6SKG_163 | 1/BA/2348:2349, 1/BA/2359:2361 | Single bulged A | homologous IL_4V9F_079 IL_31462.5 | |
| IL_6SKG_164 | 1/BA/2400:2402, 1/BA/2420:2424 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_6SKG_165 | 1/BA/2448:2450, 1/BA/2476:2477 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_6SKG_167 | 1/BA/2505:2507, 1/BA/2523:2524 | Single stack bend | homologous IL_4V9F_081 IL_26793.1 | |
| IL_6SKG_233 | 1/BA/2558:2559, 1/BA/2600:2602 | Major groove platform | homologous IL_4V9F_082 IL_48076.6 | |
| IL_6SKG_170 | 1/BA/2561:2563, 1/BA/2597:2598 | Major groove platform | homologous IL_4V9F_083 IL_07039.3 | |
| IL_6SKG_171 | 1/BA/2563:2565, 1/BA/2593:2597 | Major groove minor groove platform with extra cWW | geometric IL_4V9F_084 IL_51387.2 | |
| IL_6SKG_172 | 1/BA/2570:2574, 1/BA/2584:2588 | Triple sheared | homologous IL_4V9F_085 IL_17948.2 | |
| IL_6SKG_173 | 1/BA/2611:2612, 1/BA/2684:2686 | Major groove platform | homologous IL_4V9F_086 IL_07039.3 | |
| IL_6SKG_174 | 1/BA/2614:2616, 1/BA/2678:2682 | Isolated non-canonical cWW pair | homologous IL_4V9F_087 IL_07785.1 | |
| IL_6SKG_175 | 1/BA/2616:2617, 1/BA/2675:2678 | Multiple bulged bases | geometric IL_4V9F_088 IL_42626.2 | |
| IL_6SKG_177 | 1/BA/2626:2627, 1/BA/2644:2647 | Major groove platform with intercalation | homologous IL_4V9F_089 IL_02555.1 | |
| IL_6SKG_180 | 1/BA/2695:2696, 1/BA/2705:2707 | Single bulged A | geometric IL_1I9X_002 IL_31462.5 | |
| IL_6SKG_181 | 1/BA/2740:2744, 1/BA/2876:2884 | No text annotation | homologous IL_4V9F_091 IL_04638.3 | |
| IL_6SKG_183 | 1/BA/2756:2763, 1/BA/2768:2774 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6SKG_184 | 1/BA/2785:2789, 1/BA/2828:2830 | C-loop | homologous IL_4V9F_093 IL_63596.11 | |
| IL_6SKG_185 | 1/BA/2792:2796, 1/BA/2821:2825 | UAA/GAN | homologous IL_4V9F_094 IL_23774.1 | |
| IL_6SKG_186 | 1/BA/2800:2801, 1/BA/2814:2817 | Multiple bulged bases | geometric IL_5J7L_349 IL_42626.2 | |
| IL_6SKG_188 | 1/BA/2839:2844, 1/BA/2864:2869 | UAA/GAN with extra cWW | homologous IL_4V9F_096 IL_49767.8 | |
| IL_6SKG_189 | 1/BA/2964:2965, 1/BA/3012:3014 | Major groove intercalation | geometric IL_5J7L_352 IL_66635.5 | |
| IL_6SKG_191 | 1/BA/2969:2970, 1/BA/3006:3008 | Single bulged A | homologous IL_4V9F_098 IL_31462.5 | |
| IL_6SKG_192 | 1/BA/2973:2978, 1/BA/2999:3003 | tHS double platform | homologous IL_4V9F_099 IL_70411.2 | |
| IL_6SKG_193 | 1/BA/2982:2985, 1/BA/2992:2995 | Double sheared | homologous IL_4V9F_100 IL_09705.15 | |
| IL_6SKG_234 | 1/BB/3:5, 1/BB/121:122 | Single bulged A | geometric IL_8C3A_014 NA | |
| IL_6SKG_195 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.5 | |
| IL_6SKG_196 | 1/BB/23:29, 1/BB/55:60 | No text annotation | ||
| IL_6SKG_197 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_68140.4 | |
| IL_6SKG_198 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.11 | |
| IL_6SKG_199 | 1/BB/76:82, 1/BB/102:107 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_4V9F_106 IL_26307.2 | |
| IL_6SKG_200 | 1/BB/87:89, 1/BB/96:97 | Single bulged U | homologous IL_4V9F_107 IL_89505.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6SKG_001 | No text annotation | ||
| IL_6SKG_002 | No text annotation | ||
| IL_6SKG_006 | No text annotation | ||
| IL_6SKG_007 | No text annotation | ||
| IL_6SKG_009 | No text annotation | ||
| IL_6SKG_011 | No text annotation | ||
| IL_6SKG_017 | No text annotation | ||
| IL_6SKG_019 | No text annotation | ||
| IL_6SKG_020 | No text annotation | ||
| IL_6SKG_207 | No text annotation | ||
| IL_6SKG_025 | No text annotation | ||
| IL_6SKG_029 | No text annotation | ||
| IL_6SKG_030 | No text annotation | ||
| IL_6SKG_031 | No text annotation | ||
| IL_6SKG_033 | No text annotation | ||
| IL_6SKG_036 | No text annotation | ||
| IL_6SKG_038 | No text annotation | ||
| IL_6SKG_042 | No text annotation | ||
| IL_6SKG_043 | No text annotation | ||
| IL_6SKG_046 | No text annotation | ||
| IL_6SKG_048 | No text annotation | ||
| IL_6SKG_049 | No text annotation | ||
| IL_6SKG_050 | No text annotation | ||
| IL_6SKG_051 | No text annotation | ||
| IL_6SKG_053 | No text annotation | ||
| IL_6SKG_058 | No text annotation | ||
| IL_6SKG_060 | No text annotation | ||
| IL_6SKG_064 | No text annotation | ||
| IL_6SKG_068 | No text annotation | ||
| IL_6SKG_070 | No text annotation | ||
| IL_6SKG_081 | Isolated non-canonical cWW pair | ||
| IL_6SKG_089 | Isolated non-canonical cWW pair | ||
| IL_6SKG_090 | Isolated non-canonical cWW pair | ||
| IL_6SKG_092 | No text annotation | ||
| IL_6SKG_096 | Isolated non-canonical cWW pair | ||
| IL_6SKG_100 | No text annotation | ||
| IL_6SKG_102 | No text annotation | ||
| IL_6SKG_105 | Isolated non-canonical cWW pair | ||
| IL_6SKG_222 | Tandem non-canonical cWW pairs | ||
| IL_6SKG_124 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_6SKG_128 | No text annotation | ||
| IL_6SKG_129 | Isolated non-canonical cWW pair | ||
| IL_6SKG_137 | No text annotation | ||
| IL_6SKG_140 | Isolated non-canonical cWW pair | ||
| IL_6SKG_142 | Isolated cWH basepair | ||
| IL_6SKG_144 | No text annotation | ||
| IL_6SKG_145 | No text annotation | ||
| IL_6SKG_146 | Isolated non-canonical cWW pair | ||
| IL_6SKG_149 | Isolated non-canonical cWW pair | ||
| IL_6SKG_150 | Not an internal loop | ||
| IL_6SKG_153 | Tandem non-canonical cWW pairs | ||
| IL_6SKG_161 | No text annotation | ||
| IL_6SKG_166 | Isolated non-canonical cWW pair | ||
| IL_6SKG_168 | No text annotation | ||
| IL_6SKG_169 | No text annotation | ||
| IL_6SKG_176 | Isolated non-canonical cWW pair | ||
| IL_6SKG_178 | Isolated non-canonical cWW pair | ||
| IL_6SKG_179 | Isolated non-canonical cWW pair | ||
| IL_6SKG_182 | Isolated non-canonical cWW pair | ||
| IL_6SKG_187 | Isolated non-canonical cWW pair | ||
| IL_6SKG_190 | Isolated non-canonical cWW pair | ||
| IL_6SKG_194 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6SKG_025 | 1/Aa/41:42, 1/Aa/349:355, 1/Aa/381:383 | No text annotation | ||
| J3_6SKG_026 | 1/Aa/41:48, 1/Aa/347:355, 1/Aa/381:383 | No text annotation | ||
| J3_6SKG_002 | 1/Aa/531:533, 1/Aa/597:600, 1/Aa/700:701 | No text annotation | ||
| J3_6SKG_027 | 1/Aa/531:533, 1/Aa/597:601, 1/Aa/697:701 | No text annotation | ||
| J3_6SKG_003 | 1/Aa/618:619, 1/Aa/663:671, 1/Aa/678:680 | No text annotation | ||
| J3_6SKG_004 | 1/Aa/772:775, 1/Aa/807:811, 1/Aa/818:824 | No text annotation | ||
| J3_6SKG_028 | 1/Aa/887:890, 1/Aa/1296:1303, 1/Aa/1323:1331 | No text annotation | ||
| J3_6SKG_005 | 1/Aa/894:897, 1/Aa/1187:1189, 1/Aa/1289:1292 | No text annotation | ||
| J3_6SKG_029 | 1/Aa/906:913, 1/Aa/924:935, 1/Aa/1173:1177 | No text annotation | ||
| J3_6SKG_040 | 1/Aa/941:945, 1/Aa/987:991, 1/Aa/1162:1167 | No text annotation | ||
| J3_6SKG_030 | 1/Aa/1007:1012, 1/Aa/1051:1056, 1/Aa/1140:1145 | No text annotation | ||
| J3_6SKG_008 | 1/Aa/1017:1019, 1/Aa/1026:1030, 1/Aa/1043:1046 | No text annotation | ||
| J3_6SKG_031 | 1/Aa/1060:1062, 1/Aa/1107:1110, 1/Aa/1133:1136 | No text annotation | ||
| J3_6SKG_032 | 1/Aa/1060:1062, 1/Aa/1107:1113, 1/Aa/1127:1136 | No text annotation | ||
| J3_6SKG_010 | 1/Aa/1189:1193, 1/Aa/1248:1255, 1/Aa/1286:1289 | No text annotation | ||
| J3_6SKG_011 | 1/BA/39:40, 1/BA/513:520, 1/BA/546:547 | No text annotation | geometric J3_4V9F_011 J3_60031.2 | |
| J3_6SKG_033 | 1/BA/39:40, 1/BA/513:523, 1/BA/534:547 | No text annotation | geometric J3_4WF9_011 J3_92134.2 | |
| J3_6SKG_034 | 1/BA/41:44, 1/BA/484:500, 1/BA/507:512 | No text annotation | homologous J3_4V9F_013 J3_30040.2 | |
| J3_6SKG_035 | 1/BA/65:66, 1/BA/79:85, 1/BA/118:122 | No text annotation | homologous J3_4V9F_014 J3_35667.2 | |
| J3_6SKG_013 | 1/BA/302:304, 1/BA/411:417, 1/BA/438:443 | No text annotation | ||
| J3_6SKG_036 | 1/BA/335:339, 1/BA/355:364, 1/BA/376:380 | No text annotation | geometric J3_8VTW_041 NA | |
| J3_6SKG_014 | 1/BA/809:815, 1/BA/901:903, 1/BA/919:922 | No text annotation | homologous J3_4V9F_002 J3_64189.2 | |
| J3_6SKG_015 | 1/BA/824:826, 1/BA/858:863, 1/BA/888:891 | No text annotation | homologous J3_4V9F_003 J3_44724.7 | |
| J3_6SKG_016 | 1/BA/1434:1439, 1/BA/1771:1773, 1/BA/1785:1788 | No text annotation | geometric J3_4V9F_006 J3_19545.2 | |
| J3_6SKG_017 | 1/BA/1441:1445, 1/BA/1750:1756, 1/BA/1765:1769 | No text annotation | ||
| J3_6SKG_037 | 1/BA/1480:1485, 1/BA/1519:1523, 1/BA/1540:1541 | No text annotation | homologous J3_4V9F_016 J3_31965.2 | |
| J3_6SKG_018 | 1/BA/1553:1556, 1/BA/1565:1569, 1/BA/1728:1731 | No text annotation | ||
| J3_6SKG_038 | 1/BA/1578:1582, 1/BA/1709:1710, 1/BA/1714:1719 | No text annotation | homologous J3_4V9F_017 J3_12393.2 | |
| J3_6SKG_019 | 1/BA/2203:2205, 1/BA/2308:2312, 1/BA/2325:2330 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_6SKG_039 | 1/BA/2385:2387, 1/BA/2490:2501, 1/BA/2528:2533 | No text annotation | homologous J3_4V9F_018 J3_44792.1 | |
| J3_6SKG_021 | 1/BA/2398:2400, 1/BA/2424:2426, 1/BA/2435:2440 | No text annotation | homologous J3_4V9F_008 J3_61124.2 | |
| J3_6SKG_022 | 1/BA/2621:2624, 1/BA/2649:2652, 1/BA/2664:2671 | No text annotation | homologous J3_4V9F_009 J3_69441.1 | |
| J3_6SKG_023 | 1/BA/2940:2941, 1/BA/2957:2962, 1/BA/3016:3020 | No text annotation | homologous J3_4V9F_019 J3_76911.2 | |
| J3_6SKG_024 | 1/BB/11:16, 1/BB/68:71, 1/BB/112:115 | No text annotation | ||
| J4_6SKG_001 | 1/Aa/94:102, 1/Aa/226:228, 1/Aa/274:277, 1/Aa/299:300 | No text annotation | ||
| J4_6SKG_002 | 1/Aa/122:124, 1/Aa/158:162, 1/Aa/190:196, 1/Aa/207:209 | No text annotation | ||
| J4_6SKG_003 | 1/Aa/520:522, 1/Aa/710:714, 1/Aa/757:767, 1/Aa/829:830 | No text annotation | ||
| J4_6SKG_004 | 1/BA/259:264, 1/BA/297:302, 1/BA/443:445, 1/BA/461:464 | No text annotation | ||
| J4_6SKG_005 | 1/BA/335:339, 1/BA/355:358, 1/BA/362:364, 1/BA/376:380 | No text annotation | ||
| J4_6SKG_006 | 1/BA/1405:1412, 1/BA/1430:1431, 1/BA/1791:1795, 1/BA/2122:2123 | No text annotation | homologous J4_4V9F_003 J4_89787.1 | |
| J4_6SKG_007 | 1/BA/1446:1450, 1/BA/1474:1479, 1/BA/1542:1543, 1/BA/1742:1749 | No text annotation | homologous J4_4V9F_004 J4_69051.6 | |
| J4_6SKG_008 | 1/BA/1449:1450, 1/BA/1474:1479, 1/BA/1542:1543, 1/BA/1742:1748 | No text annotation | homologous J4_4V9F_005 J4_10313.5 | |
| J4_6SKG_009 | 1/BA/1598:1599, 1/BA/1615:1616, 1/BA/1673:1674, 1/BA/1691:1692 | No text annotation | homologous J4_4V9F_006 J4_24280.2 | |
| J4_6SKG_010 | 1/BA/1900:1904, 1/BA/1916:1920, 1/BA/1955:1958, 1/BA/2088:2092 | No text annotation | ||
| J4_6SKG_015 | 1/BA/1961:1963, 1/BA/2018:2019, 1/BA/2038:2047, 1/BA/2077:2085 | No text annotation | ||
| J4_6SKG_012 | 1/BA/2388:2392, 1/BA/2446:2448, 1/BA/2477:2478, 1/BA/2487:2489 | No text annotation | ||
| J4_6SKG_013 | 1/BA/2388:2392, 1/BA/2446:2450, 1/BA/2476:2478, 1/BA/2487:2489 | No text annotation | ||
| J4_6SKG_014 | 1/BA/2747:2750, 1/BA/2780:2781, 1/BA/2834:2836, 1/BA/2872:2873 | No text annotation | ||
| J5_6SKG_001 | 1/Aa/30:33, 1/Aa/391:394, 1/Aa/412:417, 1/Aa/437:444, 1/Aa/490:493 | No text annotation | ||
| J5_6SKG_002 | 1/Aa/54:57, 1/Aa/85:92, 1/Aa/302:304, 1/Aa/325:327, 1/Aa/338:342 | No text annotation | ||
| J5_6SKG_003 | 1/BA/56:63, 1/BA/124:129, 1/BA/138:139, 1/BA/152:154, 1/BA/167:169 | No text annotation | ||
| J5_6SKG_004 | 1/BA/259:264, 1/BA/297:304, 1/BA/411:417, 1/BA/438:445, 1/BA/461:464 | No text annotation | ||
| J5_6SKG_005 | 1/BA/568:570, 1/BA/651:654, 1/BA/669:670, 1/BA/1396:1397, 1/BA/2130:2131 | No text annotation | ||
| J5_6SKG_006 | 1/BA/675:680, 1/BA/794:797, 1/BA/937:940, 1/BA/1331:1332, 1/BA/1385:1391 | No text annotation | homologous J5_4V9F_003 J5_56920.1 | |
| J5_6SKG_007 | 1/BA/692:695, 1/BA/719:723, 1/BA/730:733, 1/BA/762:763, 1/BA/778:782 | No text annotation | homologous J5_4V9F_004 J5_87582.1 | |
| J5_6SKG_008 | 1/BA/692:695, 1/BA/719:723, 1/BA/730:736, 1/BA/761:763, 1/BA/778:782 | No text annotation | homologous J5_4V9F_005 J5_26867.1 | |
| J5_6SKG_009 | 1/BA/1822:1830, 1/BA/1854:1855, 1/BA/1879:1880, 1/BA/1884:1892, 1/BA/2101:2103 | No text annotation | homologous J5_4V9F_006 J5_62523.6 | |
| J5_6SKG_010 | 1/BA/2169:2176, 1/BA/2550:2558, 1/BA/2602:2610, 1/BA/2687:2692, 1/BA/2710:2715 | No text annotation | ||
| J5_6SKG_011 | 1/BA/2186:2189, 1/BA/2345:2348, 1/BA/2361:2362, 1/BA/2384:2385, 1/BA/2533:2539 | No text annotation | homologous J5_4V9F_008 J5_08912.1 | |
| J6_6SKG_001 | 1/BA/54:55, 1/BA/170:174, 1/BA/205:215, 1/BA/222:226, 1/BA/253:257, 1/BA/466:473 | No text annotation | ||
| J6_6SKG_002 | 1/BA/2186:2189, 1/BA/2345:2348, 1/BA/2361:2362, 1/BA/2384:2387, 1/BA/2490:2501, 1/BA/2528:2539 | No text annotation | ||
| J7_6SKG_001 | 1/BA/945:950, 1/BA/963:964, 1/BA/1074:1077, 1/BA/1099:1104, 1/BA/1115:1119, 1/BA/1295:1296, 1/BA/1321:1326 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6SKG_001 | No text annotation | ||
| J3_6SKG_006 | No text annotation | ||
| J3_6SKG_007 | No text annotation | ||
| J3_6SKG_009 | No text annotation | ||
| J3_6SKG_012 | No text annotation | ||
| J3_6SKG_020 | No text annotation | ||
| J4_6SKG_011 | No text annotation |
Coloring options: