RNA 3D Hub //

6SWA Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6SWA_0011/q/37:44No text annotation
geometric
HL_361D_002
NA
HL_6SWA_0021/q/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_6SWA_0031/q/89:95No text annotation
homologous
HL_8C3A_003
NA
HL_6SWA_0041/q/131:137Externally structured
geometric
HL_8C3A_022
NA
HL_6SWA_0051/q/199:208No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_6SWA_0061/q/218:222No text annotation
homologous
HL_8C3A_006
NA
HL_6SWA_0071/q/283:292No text annotation
homologous
HL_8C3A_008
NA
HL_6SWA_0081/q/308:317Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_6SWA_0091/q/362:367GNRA
homologous
HL_8C3A_010
NA
HL_6SWA_0101/q/387:392GNRA
homologous
HL_8C3A_011
NA
HL_6SWA_0111/q/517:630Externally structured
geometric
HL_8C3A_022
NA
HL_6SWA_0161/q/1300:1309T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_6SWA_0171/q/1346:1357No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_6SWA_0181/q/1372:1377GNRA
homologous
HL_8C3A_016
NA
HL_6SWA_0201/q/1417:1432No text annotation
geometric
HL_7A0S_011
HL_75660.7
HL_6SWA_0211/q/1461:1468UNCG variation
geometric
HL_6VMY_004
HL_51020.2
HL_6SWA_0221/q/1543:1548GNRA
homologous
HL_5TBW_019
NA
HL_6SWA_0231/q/1575:1584No text annotation
homologous
HL_8C3A_020
NA
HL_6SWA_0241/q/1609:1617No text annotation
homologous
HL_5TBW_021
NA
HL_6SWA_0251/q/1657:1662Externally structured
homologous
HL_8C3A_022
NA
HL_6SWA_0271/q/1798:1805No text annotation
homologous
HL_5TBW_024
NA
HL_6SWA_0281/q/1845:1851GNRA
homologous
HL_8C3A_025
NA
HL_6SWA_0291/q/1867:1874No text annotation
homologous
HL_5TBW_026
NA
HL_6SWA_0301/q/1959:1969No text annotation
homologous
HL_8C3A_027
NA
HL_6SWA_0311/q/1987:1994GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_6SWA_0321/q/2066:2250No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_6SWA_0331/q/2296:2301GNRA
homologous
HL_8C3A_030
NA
HL_6SWA_0821/q/2355:2363T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_6SWA_0351/q/2399:2405Pseudoknot geometry with 3' bulge
homologous
HL_8C3A_032
NA
HL_6SWA_0361/q/2437:2442GNRA variation
homologous
HL_8C3A_033
NA
HL_6SWA_0381/q/2502:2511No text annotation
homologous
HL_5TBW_035
NA
HL_6SWA_0401/q/2557:2562GNRA
homologous
HL_8C3A_036
NA
HL_6SWA_0411/q/2603:2611No text annotation
homologous
HL_8C3A_037
NA
HL_6SWA_0421/q/2642:2650No text annotation
geometric
HL_6CF2_001
HL_92598.1
HL_6SWA_0431/q/2683:2690No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_6SWA_0441/q/2717:2721No text annotation
homologous
HL_8C3A_040
NA
HL_6SWA_0451/q/2771:2778No text annotation
homologous
HL_5TBW_041
NA
HL_6SWA_0461/q/2789:2795GNRA
homologous
HL_5TBW_042
NA
HL_6SWA_0471/q/2851:2856UNCG
homologous
HL_8C3A_043
NA
HL_6SWA_0481/q/3585:3589No text annotation
homologous
HL_8C3A_045
NA
HL_6SWA_0491/q/3610:3620No text annotation
homologous
HL_5TBW_046
NA
HL_6SWA_0501/q/3639:3645GNRA
homologous
HL_8C3A_047
NA
HL_6SWA_0511/q/3695:3700GNRA
homologous
HL_8C3A_048
NA
HL_6SWA_0531/q/3767:3775No text annotation
homologous
HL_8C3A_050
NA
HL_6SWA_0541/q/3844:3853No text annotation
homologous
HL_8C3A_051
NA
HL_6SWA_0571/q/4155:4163No text annotation
homologous
HL_8C3A_055
NA
HL_6SWA_0851/q/4172:4184No text annotation
homologous
HL_8P9A_166
HL_02042.1
HL_6SWA_0591/q/4212:4220No text annotation
homologous
HL_5TBW_056
NA
HL_6SWA_0601/q/4232:4239Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_6SWA_0611/q/4263:4271No text annotation
homologous
HL_8C3A_059
NA
HL_6SWA_0621/q/4283:4288GNRA
homologous
HL_8C3A_060
NA
HL_6SWA_0631/q/4314:4324No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_6SWA_0641/q/4379:4387No text annotation
homologous
HL_5TBW_061
NA
HL_6SWA_0651/q/4436:4443No text annotation
homologous
HL_5TBW_062
NA
HL_6SWA_0661/q/4457:4467No text annotation
HL_6SWA_0671/q/4502:4507GNRA
homologous
HL_5TBW_064
NA
HL_6SWA_0681/q/4565:4570GNRA
geometric
HL_3E5C_001
HL_34789.4
HL_6SWA_0691/q/4608:4613Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_6SWA_0701/q/4650:4664No text annotation
homologous
HL_8C3A_068
NA
HL_6SWA_0711/q/4734:4819No text annotation
HL_6SWA_0721/q/4865:4872Externally structured
geometric
HL_8C3A_022
NA
HL_6SWA_0731/q/4933:4941No text annotation
homologous
HL_8C3A_071
NA
HL_6SWA_0751/r/47:56Pseudoknot with intercalation
geometric
HL_4V9F_001
HL_17803.1
HL_6SWA_0761/r/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_6SWA_0771/r/107:112No text annotation
geometric
HL_4V88_198
NA
HL_6SWA_0781/r/120:130No text annotation
geometric
HL_5TBW_006
NA
HL_6SWA_0791/s/36:41No text annotation
homologous
HL_5J7L_203
NA
HL_6SWA_0801/s/86:91GNRA
homologous
HL_5TBW_186
NA

Problematic loops

#loop idProblemSequence
HL_6SWA_012No text annotation
HL_6SWA_013No text annotation
HL_6SWA_014No text annotation
HL_6SWA_015No text annotation
HL_6SWA_081No text annotation
HL_6SWA_019No text annotation
HL_6SWA_026GNRA
HL_6SWA_034No text annotation
HL_6SWA_037No text annotation
HL_6SWA_039GNRA
HL_6SWA_083No text annotation
HL_6SWA_052No text annotation
HL_6SWA_084No text annotation
HL_6SWA_055No text annotation
HL_6SWA_056No text annotation
HL_6SWA_058No text annotation
HL_6SWA_074No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6SWA_0011/q/6:7,
1/r/149:151		Single bulged C
homologous
IL_8C3A_002
NA
IL_6SWA_0021/q/12:14,
1/r/143:144		Single bulged U
homologous
IL_8C3A_003
NA
IL_6SWA_0031/q/16:18,
1/r/139:141		Isolated non-canonical cWW pair
geometric
IL_5C5W_002
IL_01003.3
IL_6SWA_0041/q/26:27,
1/q/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_6SWA_0051/q/30:37,
1/q/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_6SWA_0061/q/81:88,
1/q/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_6SWA_0071/q/118:122,
1/q/145:151		No text annotation
IL_6SWA_0081/q/122:124,
1/q/143:145		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.3
IL_6SWA_1941/q/127:129,
1/q/139:140		Single stack bend
geometric
IL_4LFB_041
IL_15011.2
IL_6SWA_0101/q/158:160,
1/q/267:269		Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_6SWA_1671/q/161:164,
1/q/263:266		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_15225.2
IL_6SWA_1681/q/165:172,
1/q/257:262		No text annotation
IL_6SWA_0121/q/172:176,
1/q/253:257		No text annotation
IL_6SWA_1691/q/181:185,
1/q/248:249		No text annotation
geometric
IL_8C3A_128
NA
IL_6SWA_0151/q/342:344,
1/r/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_6SWA_0161/q/381:384,
1/q/395:408		No text annotation
geometric
IL_5TBW_014
NA
IL_6SWA_0171/q/409:415,
1/r/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_6SWA_0181/q/437:440,
1/q/1283:1287		No text annotation
IL_6SWA_0191/q/450:453,
1/q/689:692		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_15225.2
IL_6SWA_1701/q/456:466,
1/q/676:686		No text annotation
IL_6SWA_0211/q/467:469,
1/q/673:675		Isolated non-canonical cWW pair
geometric
IL_3GM7_002
IL_01003.3
IL_6SWA_0221/q/469:472,
1/q/670:673		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_15225.2
IL_6SWA_0231/q/472:475,
1/q/667:670		Tandem non-canonical cWW pairs
geometric
IL_6CZR_168
NA
IL_6SWA_1711/q/472:484,
1/q/658:670		No text annotation
IL_6SWA_0241/q/475:484,
1/q/658:667		No text annotation
IL_6SWA_0291/q/502:504,
1/q/643:644		Single bulged A
geometric
IL_6WPI_001
IL_14190.2
IL_6SWA_0321/q/699:700,
1/q/1270:1272		Single bulged G
geometric
IL_4LFB_036
IL_28408.2
IL_6SWA_0331/q/713:715,
1/q/929:933		No text annotation
IL_6SWA_1731/q/717:728,
1/q/914:927		No text annotation
IL_6SWA_1971/q/730:744,
1/q/897:912		No text annotation
IL_6SWA_0351/q/736:745,
1/q/896:907		No text annotation
IL_6SWA_0361/q/1060:1063,
1/q/1202:1217		No text annotation
IL_6SWA_0381/q/1068:1072,
1/q/1189:1194		No text annotation
geometric
IL_5TBW_121
NA
IL_6SWA_0391/q/1072:1074,
1/q/1188:1189		Single stack bend
geometric
IL_4WF9_007
IL_15011.2
IL_6SWA_1991/q/1156:1158,
1/q/1169:1171		Isolated cWH basepair
geometric
IL_2R1S_002
IL_10892.2
IL_6SWA_0421/q/1340:1343,
1/q/1362:1365		No text annotation
IL_6SWA_0431/q/1343:1344,
1/q/1359:1362		Multiple bulged bases
geometric
IL_6JXM_001
IL_05670.1
IL_6SWA_1751/q/1408:1411,
1/q/1438:1442		No text annotation
homologous
IL_8C3A_025
NA
IL_6SWA_0451/q/1413:1417,
1/q/1432:1436		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
NA
IL_6SWA_0461/q/1449:1450,
1/q/1478:1480		Single bulged A
homologous
IL_8C3A_026
NA
IL_6SWA_0471/q/1456:1458,
1/q/1471:1472		Single stack bend
geometric
IL_7A0S_005
IL_15011.2
IL_6SWA_0481/q/1502:1504,
1/q/1637:1639		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_6SWA_0491/q/1504:1508,
1/q/1630:1637		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_6SWA_0501/q/1532:1533,
1/q/1558:1560		Single bulged G
geometric
IL_3SUX_001
IL_28408.2
IL_6SWA_0511/q/1533:1537,
1/q/1554:1558		Triple sheared
homologous
IL_8C3A_033
NA
IL_6SWA_0521/q/1568:1571,
1/q/1587:1589		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_6SWA_0531/q/1572:1574,
1/q/1585:1586		Single bulged U
homologous
IL_8C3A_035
NA
IL_6SWA_0541/q/1606:1608,
1/q/1618:1622		No text annotation
homologous
IL_8C3A_036
NA
IL_6SWA_0551/q/1653:1655,
1/q/1664:1666		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_6SWA_0561/q/1668:1670,
1/q/1829:1832		No text annotation
IL_6SWA_0571/q/1676:1703,
1/q/1822:1823		No text annotation
IL_6SWA_0581/q/1705:1707,
1/q/1819:1820		Single bulged G
homologous
IL_8C3A_040
NA
IL_6SWA_0591/q/1714:1719,
1/q/1774:1779		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_6SWA_1771/q/1714:1720,
1/q/1772:1779		No text annotation
IL_6SWA_0601/q/1719:1720,
1/q/1772:1774		Minor groove platform
geometric
IL_6DLR_003
IL_34520.3
IL_6SWA_0611/q/1721:1726,
1/q/1768:1771		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_6SWA_0621/q/1728:1731,
1/q/1763:1766		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_6SWA_2001/q/1728:1733,
1/q/1761:1766		Tandem non-canonical cWW pairs with near WC pairs
geometric
IL_4EYA_005
IL_82292.2
IL_6SWA_0631/q/1731:1733,
1/q/1761:1763		Isolated non-canonical cWW pair
homologous
IL_8C3A_045
NA
IL_6SWA_0641/q/1735:1739,
1/q/1757:1759		No text annotation
geometric
IL_2OEU_001
IL_46387.3
IL_6SWA_0661/q/1790:1791,
1/q/1811:1813		Single stack bend
geometric
IL_4V9F_081
IL_15011.2
IL_6SWA_0671/q/1796:1798,
1/q/1805:1806		Single bulged G
geometric
IL_4V88_442
NA
IL_6SWA_0681/q/1839:1841,
1/q/1855:1857		Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_6SWA_0691/q/1886:1890,
1/q/2048:2052		UAA/GAN
homologous
IL_8C3A_051
NA
IL_6SWA_0701/q/1892:1899,
1/q/2045:2046		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_6SWA_0711/q/1899:1901,
1/q/2044:2045		No text annotation
IL_6SWA_0721/q/1901:1903,
1/q/2043:2044		No text annotation
IL_6SWA_0731/q/1907:1914,
1/q/2034:2039		No text annotation
geometric
IL_5TBW_051
NA
IL_6SWA_0741/q/1914:1925,
1/q/2019:2034		No text annotation
geometric
IL_5TBW_052
NA
IL_6SWA_0751/q/1927:1929,
1/q/2016:2017		Single bulged U
homologous
IL_5TBW_053
NA
IL_6SWA_0761/q/1938:1946,
1/q/2003:2007		Kink-turn
homologous
IL_8C3A_057
NA
IL_6SWA_0771/q/1954:1959,
1/q/1969:1974		No text annotation
IL_6SWA_0781/q/2064:2066,
1/q/2250:2252		No text annotation
geometric
IL_3ICQ_003
NA
IL_6SWA_0791/q/2269:2271,
1/q/2321:2324		No text annotation
homologous
IL_8C3A_061
NA
IL_6SWA_0801/q/2278:2280,
1/q/2313:2314		Single bulged A
homologous
IL_8C3A_062
NA
IL_6SWA_0811/q/2281:2288,
1/q/2308:2312		Kink-turn
homologous
IL_5TBW_059
NA
IL_6SWA_0821/q/2291:2293,
1/q/2304:2305		Single bulged A
geometric
IL_5WWT_001
IL_14190.2
IL_6SWA_0831/q/2337:2343,
1/q/3829:3834		No text annotation
homologous
IL_8C3A_065
NA
IL_6SWA_0841/q/2385:2388,
1/q/2762:2763		Major groove platform; stack outside cWW
geometric
IL_7A0S_046
IL_74641.2
IL_6SWA_0851/q/2394:2399,
1/q/2405:2408		No text annotation
IL_6SWA_0861/q/2425:2429,
1/q/2488:2493		UAA/GAN
homologous
IL_8C3A_067
NA
IL_6SWA_0871/q/2456:2458,
1/q/2478:2479		Single stack bend
geometric
IL_5VSU_003
IL_15011.2
IL_6SWA_0881/q/2521:2526,
1/q/2751:2753		Isolated non-canonical cWW pair
geometric
IL_4RUM_001
IL_76400.1
IL_6SWA_0891/q/2528:2529,
1/q/2747:2749		Single bulged U
geometric
IL_2R8S_004
IL_97561.3
IL_6SWA_0901/q/2568:2572,
1/q/2731:2735		Triple sheared
homologous
IL_5TBW_067
NA
IL_6SWA_1811/q/2575:2581,
1/q/2716:2728		No text annotation
IL_6SWA_0911/q/2592:2593,
1/q/2703:2705		Single bulged C
homologous
IL_8C3A_075
NA
IL_6SWA_0921/q/2593:2594,
1/q/2701:2703		Single stack bend
geometric
IL_5J7L_032
NA
IL_6SWA_0931/q/2625:2627,
1/q/2664:2667		Decoding loop related
geometric
IL_2O3X_003
IL_53541.1
IL_6SWA_1821/q/2630:2632,
1/q/2660:2661		Single bulged G
geometric
IL_7D7W_002
IL_28408.2
IL_6SWA_0951/q/2635:2641,
1/q/2651:2657		Kink-turn
homologous
IL_5TBW_073
NA
IL_6SWA_0961/q/2681:2682,
1/q/2691:2693		Single stack bend
geometric
IL_7RQB_005
NA
IL_6SWA_0971/q/2811:2817,
1/q/3821:3824		No text annotation
homologous
IL_5TBW_074
NA
IL_6SWA_0981/q/2823:2825,
1/q/3813:3815		No text annotation
homologous
IL_8C3A_081
NA
IL_6SWA_0991/q/2826:2829,
1/q/3811:3812		Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_6SWA_1831/q/2826:2834,
1/q/3808:3812		No text annotation
homologous
IL_8C3A_484
NA
IL_6SWA_1001/q/2829:2834,
1/q/3808:3811		Intercalated tWH
geometric
IL_5TBW_077
NA
IL_6SWA_1011/q/2846:2851,
1/q/2856:2862		tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_20700.1
IL_6SWA_1021/q/2868:2870,
1/q/3581:3583		Isolated non-canonical cWW pair
homologous
IL_5TBW_079
NA
IL_6SWA_1031/q/2875:2876,
1/q/3573:3576		No text annotation
homologous
IL_8C3A_086
NA
IL_6SWA_1051/q/3603:3604,
1/q/3798:3800		Single bulged A
homologous
IL_5TBW_082
NA
IL_6SWA_1061/q/3631:3636,
1/q/3648:3655		No text annotation
homologous
IL_8C3A_088
NA
IL_6SWA_1071/q/3671:3674,
1/q/3720:3721		No text annotation
homologous
IL_8C3A_089
NA
IL_6SWA_1081/q/3675:3676,
1/q/3716:3719		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_6SWA_1091/q/3679:3685,
1/q/3710:3713		No text annotation
IL_6SWA_1101/q/3686:3692,
1/q/3703:3709		No text annotation
homologous
IL_8C3A_093
NA
IL_6SWA_1111/q/3751:3752,
1/q/3782:3785		No text annotation
homologous
IL_8C3A_094
NA
IL_6SWA_1121/q/3752:3763,
1/q/3779:3782		No text annotation
geometric
IL_5TBW_090
NA
IL_6SWA_1131/q/3866:3869,
1/q/4525:4527		No text annotation
homologous
IL_8C3A_096
NA
IL_6SWA_1141/q/3871:3873,
1/q/4520:4523		Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_6SWA_1151/q/3884:3886,
1/q/4350:4351		Single bulged U
homologous
IL_8C3A_098
NA
IL_6SWA_1161/q/3887:3888,
1/q/4346:4349		Minor groove platform
homologous
IL_5TBW_094
NA
IL_6SWA_1171/q/3898:3900,
1/q/4143:4146		Isolated tHS basepair with bulges
homologous
IL_5TBW_095
NA
IL_6SWA_1221/q/4052:4058,
1/q/4123:4126		No text annotation
homologous
IL_8C3A_106
NA
IL_6SWA_1231/q/4060:4062,
1/q/4120:4121		Single stack bend
geometric
IL_7A0S_054
IL_15011.2
IL_6SWA_1241/q/4153:4154,
1/q/4164:4166		Single bulged A
homologous
IL_5TBW_098
NA
IL_6SWA_1251/q/4205:4207,
1/q/4225:4229		Isolated tHS basepair with bulges
geometric
IL_7RQB_082
NA
IL_6SWA_1261/q/4257:4260,
1/q/4274:4277		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_6SWA_2021/q/4309:4312,
1/q/4326:4327		Single stack bend
geometric
IL_5J7L_032
NA
IL_6SWA_1281/q/4362:4367,
1/q/4401:4406		No text annotation
IL_6SWA_1291/q/4367:4369,
1/q/4397:4401		Major groove minor groove platform with extra cWW
homologous
IL_8C3A_113
NA
IL_6SWA_1301/q/4374:4378,
1/q/4388:4392		No text annotation
homologous
IL_8C3A_114
NA
IL_6SWA_1311/q/4415:4416,
1/q/4488:4490		Major groove platform
homologous
IL_5TBW_107
NA
IL_6SWA_1321/q/4418:4420,
1/q/4482:4486		No text annotation
homologous
IL_8C3A_116
NA
IL_6SWA_1331/q/4420:4421,
1/q/4479:4482		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_6SWA_1341/q/4428:4430,
1/q/4451:4453		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_6SWA_2031/q/4428:4432,
1/q/4447:4453		No text annotation
IL_6SWA_1351/q/4430:4432,
1/q/4447:4451		No text annotation
IL_6SWA_1361/q/4499:4500,
1/q/4509:4511		Single bulged A
geometric
IL_1U9S_001
IL_14190.2
IL_6SWA_1371/q/4542:4547,
1/q/4679:4685		No text annotation
IL_6SWA_1381/q/4552:4554,
1/q/4580:4582		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_6SWA_1391/q/4558:4565,
1/q/4570:4576		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_6SWA_1401/q/4586:4591,
1/q/4631:4635		No text annotation
geometric
IL_5TBW_062
NA
IL_6SWA_1411/q/4594:4599,
1/q/4624:4628		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_6SWA_1421/q/4600:4602,
1/q/4621:4623		Isolated non-canonical cWW contact
geometric
IL_4V88_395
NA
IL_6SWA_1431/q/4603:4604,
1/q/4617:4620		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_6SWA_1441/q/4642:4647,
1/q/4667:4672		UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA
IL_6SWA_2041/q/4705:4708,
1/q/4911:4915		No text annotation
IL_6SWA_1921/q/4716:4733,
1/q/4820:4836		No text annotation
IL_6SWA_2051/q/4843:4847,
1/q/4888:4892		No text annotation
geometric
IL_8P9A_349
IL_71154.3
IL_6SWA_1481/q/4849:4855,
1/q/4881:4886		No text annotation
IL_6SWA_1501/q/4930:4933,
1/q/4941:4944		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_6SWA_1511/q/4950:4952,
1/q/5015:5017		Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_01003.3
IL_6SWA_1521/q/4954:4955,
1/q/5011:5013		No text annotation
IL_6SWA_1531/q/4958:4960,
1/q/5003:5008		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_6SWA_1541/q/4961:4967,
1/q/4997:5002		No text annotation
IL_6SWA_1551/q/4970:4972,
1/q/4993:4994		Single bulged U
homologous
IL_8C3A_140
NA
IL_6SWA_1561/q/4972:4975,
1/q/4990:4993		Double sheared; A in syn
geometric
IL_5TBW_135
NA
IL_6SWA_1571/r/64:66,
1/r/92:95		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_6SWA_1581/s/15:16,
1/s/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_6SWA_1591/s/21:27,
1/s/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_6SWA_1601/s/28:32,
1/s/45:51		No text annotation
IL_6SWA_1611/s/32:36,
1/s/41:45		Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_6SWA_1621/s/71:78,
1/s/98:104		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_6SWA_1631/s/79:81,
1/s/95:97		Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_6SWA_1641/s/82:85,
1/s/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA

Problematic loops

#loop idProblemSequence
IL_6SWA_165Isolated non-canonical cWW pair
IL_6SWA_009No text annotation
IL_6SWA_166No text annotation
IL_6SWA_011No text annotation
IL_6SWA_013Single stack bend
IL_6SWA_014Isolated non-canonical cWW pair
IL_6SWA_020Isolated non-canonical cWW pair
IL_6SWA_025Single stack bend
IL_6SWA_026No text annotation
IL_6SWA_195Single stack bend
IL_6SWA_027No text annotation
IL_6SWA_196No text annotation
IL_6SWA_028No text annotation
IL_6SWA_172Isolated non-canonical cWW pair
IL_6SWA_030Multiple bulged bases
IL_6SWA_031No text annotation
IL_6SWA_034No text annotation
IL_6SWA_174No text annotation
IL_6SWA_198No text annotation
IL_6SWA_037No text annotation
IL_6SWA_040Single stack bend
IL_6SWA_041Tandem non-canonical cWW pairs
IL_6SWA_044Triple sheared related
IL_6SWA_176Isolated non-canonical cWW pair
IL_6SWA_178No text annotation
IL_6SWA_179No text annotation
IL_6SWA_065Tandem non-canonical cWW pairs
IL_6SWA_180No text annotation
IL_6SWA_094Isolated cWH basepair
IL_6SWA_184No text annotation
IL_6SWA_185Tandem non-canonical cWW pairs
IL_6SWA_104Single stack bend
IL_6SWA_186No text annotation
IL_6SWA_118No text annotation
IL_6SWA_201No text annotation
IL_6SWA_119Tandem non-canonical cWW pairs
IL_6SWA_120Partly complementary
IL_6SWA_187No text annotation
IL_6SWA_121No text annotation
IL_6SWA_127No text annotation
IL_6SWA_188No text annotation
IL_6SWA_189No text annotation
IL_6SWA_190No text annotation
IL_6SWA_145Other IL
IL_6SWA_146No text annotation
IL_6SWA_191No text annotation
IL_6SWA_147Tandem non-canonical cWW pairs with near WC pairs
IL_6SWA_149No text annotation
IL_6SWA_193No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6SWA_0011/q/112:118,
1/q/151:158,
1/q/269:272		No text annotation
J3_6SWA_0171/q/188:199,
1/q/208:218,
1/q/222:245		No text annotation
J3_6SWA_0181/q/345:361,
1/q/368:373,
1/r/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_6SWA_0021/q/374:381,
1/q/408:409,
1/r/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_6SWA_0191/q/374:384,
1/q/395:409,
1/r/19:20		No text annotation
homologous
J3_8P9A_047
J3_17917.1
J3_6SWA_0031/q/442:450,
1/q/692:696,
1/q/1275:1281		No text annotation
J3_6SWA_0201/q/701:704,
1/q/942:964,
1/q/1260:1269		No text annotation
J3_6SWA_0051/q/1513:1519,
1/q/1604:1606,
1/q/1622:1625		No text annotation
homologous
J3_8C3A_003
NA
J3_6SWA_0061/q/1527:1530,
1/q/1562:1566,
1/q/1591:1596		No text annotation
homologous
J3_5TBW_005
NA
J3_6SWA_0221/q/1708:1709,
1/q/1784:1789,
1/q/1814:1818		No text annotation
J3_6SWA_0071/q/1950:1952,
1/q/1976:1986,
1/q/1995:1999		No text annotation
J3_6SWA_0231/q/1950:1953,
1/q/1975:1986,
1/q/1995:1999		No text annotation
J3_6SWA_0081/q/2372:2378,
1/q/2784:2786,
1/q/2798:2801		No text annotation
homologous
J3_5TBW_008
NA
J3_6SWA_0091/q/2381:2384,
1/q/2764:2770,
1/q/2779:2781		No text annotation
homologous
J3_8C3A_007
NA
J3_6SWA_0101/q/2419:2424,
1/q/2494:2498,
1/q/2515:2516		No text annotation
homologous
J3_5TBW_010
NA
J3_6SWA_0241/q/2430:2435,
1/q/2444:2458,
1/q/2478:2487		No text annotation
J3_6SWA_0111/q/3908:3910,
1/q/4044:4048,
1/q/4130:4135		No text annotation
geometric
J3_8VTW_006
NA
J3_6SWA_0261/q/4062:4071,
1/q/4077:4098,
1/q/4117:4120		No text annotation
J3_6SWA_0271/q/4190:4192,
1/q/4293:4304,
1/q/4332:4337		No text annotation
homologous
J3_8C3A_056
NA
J3_6SWA_0121/q/4203:4205,
1/q/4229:4231,
1/q/4240:4245		No text annotation
homologous
J3_8C3A_010
NA
J3_6SWA_0131/q/4425:4428,
1/q/4453:4455,
1/q/4469:4475		No text annotation
homologous
J3_5TBW_014
NA
J3_6SWA_0301/q/4710:4716,
1/q/4836:4841,
1/q/4894:4909		No text annotation
J3_6SWA_0141/q/4928:4930,
1/q/4944:4950,
1/q/5017:5021		No text annotation
J3_6SWA_0151/r/44:45,
1/r/58:64,
1/r/95:99		No text annotation
homologous
J3_8C3A_060
NA
J3_6SWA_0291/s/9:14,
1/s/65:66,
1/s/109:110		No text annotation
homologous
J3_8P9A_066
J3_26985.1
J4_6SWA_0111/q/965:970,
1/q/1053:1058,
1/q/1219:1229,
1/q/1247:1259		No text annotation
J4_6SWA_0021/q/2344:2350,
1/q/2368:2370,
1/q/2803:2808,
1/q/3827:3828		No text annotation
J4_6SWA_0031/q/2385:2389,
1/q/2413:2418,
1/q/2517:2518,
1/q/2756:2763		No text annotation
J4_6SWA_0041/q/2388:2389,
1/q/2413:2418,
1/q/2517:2518,
1/q/2756:2762		No text annotation
J4_6SWA_0051/q/2530:2534,
1/q/2551:2555,
1/q/2564:2568,
1/q/2735:2746		No text annotation
J4_6SWA_0061/q/2597:2598,
1/q/2616:2621,
1/q/2671:2681,
1/q/2693:2698		No text annotation
J4_6SWA_0071/q/3605:3609,
1/q/3621:3625,
1/q/3661:3665,
1/q/3792:3797		No text annotation
homologous
J4_8C3A_006
NA
J4_6SWA_0121/q/3667:3669,
1/q/3723:3724,
1/q/3742:3751,
1/q/3785:3790		No text annotation
homologous
J4_8CRE_007
NA
J4_6SWA_0131/q/4193:4197,
1/q/4251:4255,
1/q/4279:4281,
1/q/4290:4292		No text annotation
homologous
J4_8CRE_008
NA
J4_6SWA_0101/q/4549:4552,
1/q/4582:4583,
1/q/4638:4640,
1/q/4674:4677		No text annotation
J5_6SWA_0011/q/19:21,
1/r/35:42,
1/r/101:106,
1/r/113:114,
1/r/136:138		No text annotation
homologous
J5_8P9A_010
J5_27223.1
J5_6SWA_0021/q/111:118,
1/q/151:158,
1/q/269:277,
1/q/298:304,
1/q/321:324		No text annotation
J5_6SWA_0031/q/1318:1323,
1/q/1498:1501,
1/q/1640:1643,
1/q/2267:2269,
1/q/2324:2330		No text annotation
J5_6SWA_0041/q/2834:2842,
1/q/2866:2867,
1/q/3584:3585,
1/q/3589:3597,
1/q/3806:3808		No text annotation
homologous
J5_8C3A_004
NA
J5_6SWA_0051/q/3874:3881,
1/q/4354:4362,
1/q/4406:4415,
1/q/4490:4496,
1/q/4514:4519		No text annotation
J5_6SWA_0061/q/3891:3894,
1/q/4150:4153,
1/q/4166:4167,
1/q/4189:4190,
1/q/4337:4343		No text annotation
homologous
J5_8C3A_006
NA
J6_6SWA_0011/q/21:26,
1/q/57:67,
1/q/74:78,
1/q/105:109,
1/q/326:336,
1/r/32:35		No text annotation
J6_6SWA_0041/q/1335:1338,
1/q/1367:1371,
1/q/1378:1382,
1/q/1401:1404,
1/q/1446:1448,
1/q/1481:1486		No text annotation
J6_6SWA_0031/q/3891:3894,
1/q/4150:4153,
1/q/4166:4167,
1/q/4189:4192,
1/q/4293:4304,
1/q/4332:4343		No text annotation
J7_6SWA_0021/q/1648:1655,
1/q/1664:1667,
1/q/1833:1836,
1/q/1860:1865,
1/q/1876:1880,
1/q/2058:2059,
1/q/2257:2262		No text annotation

Problematic loops

#loop idProblemSequence
J3_6SWA_004No text annotation
J3_6SWA_021No text annotation
J3_6SWA_025No text annotation
J3_6SWA_028No text annotation
J3_6SWA_016No text annotation
J4_6SWA_001No text annotation
J4_6SWA_008No text annotation
J4_6SWA_009No text annotation
J6_6SWA_002No text annotation
J7_6SWA_001No text annotation

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