4WWW Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4WWW_001 | 1/QA/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_67265.4 | |
| HL_4WWW_002 | 1/QA/83:86 | No text annotation Not in a motif group | ||
| HL_4WWW_003 | 1/QA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_43074.18 | |
| HL_4WWW_004 | 1/QA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_43074.18 | |
| HL_4WWW_005 | 1/QA/207:212 | No text annotation Not in a motif group | ||
| HL_4WWW_006 | 1/QA/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_93727.5 | |
| HL_4WWW_007 | 1/QA/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_43074.18 | |
| HL_4WWW_008 | 1/QA/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_4WWW_009 | 1/QA/342:347 | UNCG Not in a motif group | homologous HL_5J7L_009 HL_79299.11 | |
| HL_4WWW_010 | 1/QA/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_43074.18 | |
| HL_4WWW_011 | 1/QA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_79299.11 | |
| HL_4WWW_012 | 1/QA/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_42733.4 | |
| HL_4WWW_013 | 1/QA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_62869.3 | |
| HL_4WWW_014 | 1/QA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26055.6 | |
| HL_4WWW_015 | 1/QA/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_87219.4 | |
| HL_4WWW_016 | 1/QA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_43074.18 | |
| HL_4WWW_017 | 1/QA/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_87219.4 | |
| HL_4WWW_018 | 1/QA/840:846 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_15942.5 | |
| HL_4WWW_019 | 1/QA/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_43074.18 | |
| HL_4WWW_020 | 1/QA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_43074.18 | |
| HL_4WWW_021 | 1/QA/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_4WWW_022 | 1/QA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_43074.18 | |
| HL_4WWW_023 | 1/QA/1028:1033 | No text annotation Not in a motif group | ||
| HL_4WWW_024 | 1/QA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_43074.18 | |
| HL_4WWW_025 | 1/QA/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_54035.7 | |
| HL_4WWW_026 | 1/QA/1133:1141 | No text annotation Not in a motif group | ||
| HL_4WWW_027 | 1/QA/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_68304.6 | |
| HL_4WWW_028 | 1/QA/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_43074.18 | |
| HL_4WWW_029 | 1/QA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_78061.2 | |
| HL_4WWW_030 | 1/QA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_70505.1 | |
| HL_4WWW_031 | 1/QA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_79299.11 | |
| HL_4WWW_032 | 1/QA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4WWW_033 | 1/RA/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_29414.1 | |
| HL_4WWW_034 | 1/RA/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_17926.5 | |
| HL_4WWW_035 | 1/RA/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_62869.3 | |
| HL_4WWW_036 | 1/RA/137:142 | No text annotation Not in a motif group | ||
| HL_4WWW_037 | 1/RA/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_4WWW_038 | 1/RA/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_23481.5 | |
| HL_4WWW_039 | 1/RA/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_35894.3 | |
| HL_4WWW_040 | 1/RA/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.5 | |
| HL_4WWW_041 | 1/RA/305:312 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_68493.6 | |
| HL_4WWW_042 | 1/RA/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_98557.5 | |
| HL_4WWW_043 | 1/RA/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.6 | |
| HL_4WWW_044 | 1/RA/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.3 | |
| HL_4WWW_045 | 1/RA/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_32512.8 | |
| HL_4WWW_046 | 1/RA/462:467 | No text annotation Not in a motif group | homologous HL_7A0S_015 HL_43074.18 | |
| HL_4WWW_047 | 1/RA/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_68304.6 | |
| HL_4WWW_048 | 1/RA/543:550 | No text annotation Not in a motif group | homologous HL_7RQB_017 NA | |
| HL_4WWW_049 | 1/RA/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_150 HL_33239.17 | |
| HL_4WWW_050 | 1/RA/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_25660.1 | |
| HL_4WWW_051 | 1/RA/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_43074.18 | |
| HL_4WWW_052 | 1/RA/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_16419.1 | |
| HL_4WWW_053 | 1/RA/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_93727.5 | |
| HL_4WWW_054 | 1/RA/744:753 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.5 | |
| HL_4WWW_055 | 1/RA/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_77081.1 | |
| HL_4WWW_056 | 1/RA/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_15942.5 | |
| HL_4WWW_058 | 1/RA/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_43074.18 | |
| HL_4WWW_059 | 1/RA/978:985 | No text annotation Not in a motif group | homologous HL_4WF9_028 HL_72451.5 | |
| HL_4WWW_060 | 1/RA/1064:1074 | No text annotation Not in a motif group | ||
| HL_4WWW_061 | 1/RA/1092:1099 | No text annotation Not in a motif group | geometric HL_4V9F_007 HL_12053.1 | |
| HL_4WWW_062 | 1/RA/1172:1177 | No text annotation Not in a motif group | ||
| HL_4WWW_063 | 1/RA/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_43074.18 | |
| HL_4WWW_064 | 1/RA/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_33239.17 | |
| HL_4WWW_065 | 1/RA/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_86880.5 | |
| HL_4WWW_066 | 1/RA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_43074.18 | |
| HL_4WWW_067 | 1/RA/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_78457.4 | |
| HL_4WWW_068 | 1/RA/1451:1459 | No text annotation Not in a motif group | homologous HL_5J7L_169 HL_71540.1 | |
| HL_4WWW_069 | 1/RA/1491:1499 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_18218.2 | |
| HL_4WWW_070 | 1/RA/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_79299.11 | |
| HL_4WWW_071 | 1/RA/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_69353.7 | |
| HL_4WWW_072 | 1/RA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_66171.3 | |
| HL_4WWW_073 | 1/RA/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_02361.6 | |
| HL_4WWW_074 | 1/RA/1691:1696 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_79299.11 | |
| HL_4WWW_075 | 1/RA/1728:1731 | No text annotation Not in a motif group | homologous HL_5J7L_176 HL_46546.1 | |
| HL_4WWW_076 | 1/RA/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_79272.3 | |
| HL_4WWW_077 | 1/RA/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.4 | |
| HL_4WWW_078 | 1/RA/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_32527.3 | |
| HL_4WWW_079 | 1/RA/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_43074.18 | |
| HL_4WWW_080 | 1/RA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_98248.1 | |
| HL_4WWW_081 | 1/RA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_53760.4 | |
| HL_4WWW_082 | 1/RA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.5 | |
| HL_4WWW_084 | 1/RA/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.5 | |
| HL_4WWW_085 | 1/RA/2248:2256 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_4WWW_086 | 1/RA/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.5 | |
| HL_4WWW_087 | 1/RA/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_4WWW_088 | 1/RA/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_46142.8 | |
| HL_4WWW_089 | 1/RA/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_43074.18 | |
| HL_4WWW_090 | 1/RA/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_43074.18 | |
| HL_4WWW_091 | 1/RA/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_48376.4 | |
| HL_4WWW_092 | 1/RA/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_36421.5 | |
| HL_4WWW_093 | 1/RA/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_92681.5 | |
| HL_4WWW_094 | 1/RA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_26055.6 | |
| HL_4WWW_095 | 1/RA/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_43074.18 | |
| HL_4WWW_096 | 1/RA/2658:2663 | GNRA Not in a motif group | geometric HL_5J7L_197 HL_43074.18 | |
| HL_4WWW_097 | 1/RA/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_67719.1 | |
| HL_4WWW_098 | 1/RA/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.5 | |
| HL_4WWW_099 | 1/RA/2796:2799 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_46546.1 | |
| HL_4WWW_100 | 1/RA/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_05018.6 | |
| HL_4WWW_101 | 1/RA/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_43074.18 | |
| HL_4WWW_102 | 1/RB/38:44 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_02733.5 | |
| HL_4WWW_103 | 1/RB/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_36982.3 | |
| HL_4WWW_104 | 1/XA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_67265.4 | |
| HL_4WWW_105 | 1/XA/83:86 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_18722.3 | |
| HL_4WWW_106 | 1/XA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_43074.18 | |
| HL_4WWW_107 | 1/XA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_43074.18 | |
| HL_4WWW_109 | 1/XA/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_93727.5 | |
| HL_4WWW_110 | 1/XA/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_43074.18 | |
| HL_4WWW_111 | 1/XA/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_4WWW_112 | 1/XA/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_79299.11 | |
| HL_4WWW_113 | 1/XA/379:384 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_62869.3 | |
| HL_4WWW_114 | 1/XA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_79299.11 | |
| HL_4WWW_115 | 1/XA/462:470 | No text annotation Not in a motif group | ||
| HL_4WWW_116 | 1/XA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_62869.3 | |
| HL_4WWW_117 | 1/XA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26055.6 | |
| HL_4WWW_118 | 1/XA/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_87219.4 | |
| HL_4WWW_119 | 1/XA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_43074.18 | |
| HL_4WWW_120 | 1/XA/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_87219.4 | |
| HL_4WWW_121 | 1/XA/840:846 | No text annotation Not in a motif group | geometric HL_5TBW_044 HL_05667.1 | |
| HL_4WWW_122 | 1/XA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_43074.18 | |
| HL_4WWW_123 | 1/XA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_43074.18 | |
| HL_4WWW_124 | 1/XA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4WWW_125 | 1/XA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_43074.18 | |
| HL_4WWW_126 | 1/XA/1028:1033 | No text annotation Not in a motif group | geometric HL_4LFB_005 HL_57052.3 | |
| HL_4WWW_127 | 1/XA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_43074.18 | |
| HL_4WWW_128 | 1/XA/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_54035.7 | |
| HL_4WWW_129 | 1/XA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4WWW_130 | 1/XA/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_68304.6 | |
| HL_4WWW_131 | 1/XA/1265:1270 | No text annotation Not in a motif group | homologous HL_6CZR_099 NA | |
| HL_4WWW_132 | 1/XA/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_78061.2 | |
| HL_4WWW_133 | 1/XA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_70505.1 | |
| HL_4WWW_134 | 1/XA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_79299.11 | |
| HL_4WWW_135 | 1/XA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4WWW_136 | 1/YA/59:68 | No text annotation Not in a motif group | geometric HL_6N5P_003 HL_46142.8 | |
| HL_4WWW_137 | 1/YA/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_17926.5 | |
| HL_4WWW_138 | 1/YA/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_62869.3 | |
| HL_4WWW_139 | 1/YA/137:142 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_30541.1 | |
| HL_4WWW_140 | 1/YA/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_4WWW_141 | 1/YA/194:201 | No text annotation Not in a motif group | geometric HL_7RQB_006 HL_23481.5 | |
| HL_4WWW_142 | 1/YA/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_35894.3 | |
| HL_4WWW_143 | 1/YA/246:252 | No text annotation Not in a motif group | homologous HL_4WF9_008 HL_67216.5 | |
| HL_4WWW_144 | 1/YA/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_68493.6 | |
| HL_4WWW_145 | 1/YA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.6 | |
| HL_4WWW_146 | 1/YA/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.3 | |
| HL_4WWW_147 | 1/YA/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_32512.8 | |
| HL_4WWW_148 | 1/YA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_43074.18 | |
| HL_4WWW_149 | 1/YA/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_68304.6 | |
| HL_4WWW_150 | 1/YA/543:550 | No text annotation Not in a motif group | homologous HL_5J7L_149 HL_59297.1 | |
| HL_4WWW_151 | 1/YA/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_150 HL_33239.17 | |
| HL_4WWW_152 | 1/YA/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_25660.1 | |
| HL_4WWW_153 | 1/YA/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_43074.18 | |
| HL_4WWW_154 | 1/YA/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_02361.6 | |
| HL_4WWW_155 | 1/YA/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_93727.5 | |
| HL_4WWW_156 | 1/YA/744:753 | No text annotation Not in a motif group | homologous HL_7A0S_022 HL_39334.5 | |
| HL_4WWW_157 | 1/YA/779:785 | No text annotation Not in a motif group | geometric HL_6JQ6_004 HL_79299.11 | |
| HL_4WWW_158 | 1/YA/826:831 | No text annotation Not in a motif group | homologous HL_7A0S_024 HL_15942.5 | |
| HL_4WWW_160 | 1/YA/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_43074.18 | |
| HL_4WWW_161 | 1/YA/978:985 | No text annotation Not in a motif group | homologous HL_4WF9_028 HL_72451.5 | |
| HL_4WWW_162 | 1/YA/1064:1074 | No text annotation Not in a motif group | homologous HL_5J7L_161 HL_92304.3 | |
| HL_4WWW_163 | 1/YA/1092:1099 | No text annotation Not in a motif group | homologous HL_1MMS_002 HL_93727.5 | |
| HL_4WWW_164 | 1/YA/1172:1177 | No text annotation Not in a motif group | ||
| HL_4WWW_165 | 1/YA/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_43074.18 | |
| HL_4WWW_166 | 1/YA/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5J7L_165 HL_33239.17 | |
| HL_4WWW_167 | 1/YA/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_86880.5 | |
| HL_4WWW_168 | 1/YA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_43074.18 | |
| HL_4WWW_169 | 1/YA/1389:1398 | No text annotation Not in a motif group | geometric HL_4V9F_037 HL_78457.4 | |
| HL_4WWW_170 | 1/YA/1449:1462 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_98557.5 | |
| HL_4WWW_171 | 1/YA/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_86880.5 | |
| HL_4WWW_172 | 1/YA/1533:1538 | No text annotation Not in a motif group | ||
| HL_4WWW_173 | 1/YA/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_69353.7 | |
| HL_4WWW_174 | 1/YA/1611:1620 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_56387.1 | |
| HL_4WWW_175 | 1/YA/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_02361.6 | |
| HL_4WWW_176 | 1/YA/1691:1696 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_79299.11 | |
| HL_4WWW_177 | 1/YA/1728:1731 | No text annotation Not in a motif group | ||
| HL_4WWW_178 | 1/YA/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_79272.3 | |
| HL_4WWW_179 | 1/YA/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.4 | |
| HL_4WWW_180 | 1/YA/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_32527.3 | |
| HL_4WWW_181 | 1/YA/1868:1873 | Other HL Not in a motif group | geometric HL_2CZJ_007 HL_79299.11 | |
| HL_4WWW_182 | 1/YA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_98248.1 | |
| HL_4WWW_183 | 1/YA/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_53760.4 | |
| HL_4WWW_184 | 1/YA/2026:2037 | No text annotation Not in a motif group | geometric HL_4V7M_040 HL_32458.3 | |
| HL_4WWW_185 | 1/YA/2141:2150 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_18218.2 | |
| HL_4WWW_186 | 1/YA/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.5 | |
| HL_4WWW_187 | 1/YA/2248:2256 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_4WWW_188 | 1/YA/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.5 | |
| HL_4WWW_189 | 1/YA/2302:2314 | No text annotation Not in a motif group | ||
| HL_4WWW_190 | 1/YA/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_46142.8 | |
| HL_4WWW_191 | 1/YA/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_43074.18 | |
| HL_4WWW_192 | 1/YA/2374:2379 | No text annotation Not in a motif group | homologous HL_7A0S_057 HL_43074.18 | |
| HL_4WWW_193 | 1/YA/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_48376.4 | |
| HL_4WWW_194 | 1/YA/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_36421.5 | |
| HL_4WWW_195 | 1/YA/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_92681.5 | |
| HL_4WWW_196 | 1/YA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_26055.6 | |
| HL_4WWW_197 | 1/YA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_43074.18 | |
| HL_4WWW_198 | 1/YA/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_43074.18 | |
| HL_4WWW_199 | 1/YA/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_67719.1 | |
| HL_4WWW_200 | 1/YA/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.5 | |
| HL_4WWW_201 | 1/YA/2795:2801 | No text annotation Not in a motif group | ||
| HL_4WWW_202 | 1/YA/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_05018.6 | |
| HL_4WWW_203 | 1/YA/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_43074.18 | |
| HL_4WWW_204 | 1/YB/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_02733.5 | |
| HL_4WWW_205 | 1/YB/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_36982.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4WWW_057 | No text annotation | ||
| HL_4WWW_083 | No text annotation | ||
| HL_4WWW_108 | UNCG | ||
| HL_4WWW_159 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4WWW_001 | 1/QA/30:32, 1/QA/552:553 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_59137.10 | |
| IL_4WWW_002 | 1/QA/44:45, 1/QA/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_80007.16 | |
| IL_4WWW_003 | 1/QA/47:52, 1/QA/359:361 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_34626.4 | |
| IL_4WWW_004 | 1/QA/54:56, 1/QA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_06437.11 | |
| IL_4WWW_005 | 1/QA/63:66, 1/QA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_13730.12 | |
| IL_4WWW_006 | 1/QA/67:69, 1/QA/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_87332.1 | |
| IL_4WWW_007 | 1/QA/70:73, 1/QA/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_94431.4 | |
| IL_4WWW_008 | 1/QA/75:76, 1/QA/93:95 | No text annotation Not in a motif group | ||
| IL_4WWW_011 | 1/QA/128:131, 1/QA/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_55456.1 | |
| IL_4WWW_012 | 1/QA/132:136, 1/QA/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.1 | |
| IL_4WWW_013 | 1/QA/147:153, 1/QA/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_92440.5 | |
| IL_4WWW_014 | 1/QA/199:201, 1/QA/216:218 | No text annotation Not in a motif group | geometric IL_7A0S_031 IL_01312.13 | |
| IL_4WWW_015 | 1/QA/203:206, 1/QA/213:214 | Minor groove platform Not in a motif group | geometric IL_3RW6_003 IL_27900.1 | |
| IL_4WWW_016 | 1/QA/242:247, 1/QA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_29549.9 | |
| IL_4WWW_017 | 1/QA/249:252, 1/QA/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_83121.7 | |
| IL_4WWW_018 | 1/QA/292:293, 1/QA/304:308 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_08376.2 | |
| IL_4WWW_019 | 1/QA/367:369, 1/QA/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.11 | |
| IL_4WWW_020 | 1/QA/371:375, 1/QA/389:390 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_08376.2 | |
| IL_4WWW_021 | 1/QA/375:376, 1/QA/387:389 | Single bulged G Not in a motif group | geometric IL_4LFB_016 IL_59137.10 | |
| IL_4WWW_022 | 1/QA/409:416, 1/QA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_45257.1 | |
| IL_4WWW_023 | 1/QA/440:442, 1/QA/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_45289.1 | |
| IL_4WWW_024 | 1/QA/446:450, 1/QA/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_98711.1 | |
| IL_4WWW_025 | 1/QA/450:455, 1/QA/477:483 | No text annotation Not in a motif group | ||
| IL_4WWW_026 | 1/QA/458:459, 1/QA/472:474 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_72766.2 | |
| IL_4WWW_027 | 1/QA/460:462, 1/QA/470:471 | Single bulged A Not in a motif group | geometric IL_5J7L_312 IL_80007.16 | |
| IL_4WWW_028 | 1/QA/504:511, 1/QA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.6 | |
| IL_4WWW_029 | 1/QA/515:521, 1/QA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_04667.1 | |
| IL_4WWW_030 | 1/QA/569:575, 1/QA/880:881 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_19222.1 | |
| IL_4WWW_031 | 1/QA/580:584, 1/QA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_39521.5 | |
| IL_4WWW_032 | 1/QA/594:596, 1/QA/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_80663.10 | |
| IL_4WWW_033 | 1/QA/597:598, 1/QA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.4 | |
| IL_4WWW_035 | 1/QA/605:612, 1/QA/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_01502.1 | |
| IL_4WWW_036 | 1/QA/654:655, 1/QA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_80663.10 | |
| IL_4WWW_037 | 1/QA/658:659, 1/QA/746:748 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_04038.4 | |
| IL_4WWW_038 | 1/QA/662:666, 1/QA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_85877.10 | |
| IL_4WWW_039 | 1/QA/673:679, 1/QA/711:717 | No text annotation Not in a motif group | ||
| IL_4WWW_040 | 1/QA/683:688, 1/QA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4WWW_041 | 1/QA/774:778, 1/QA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_19389.4 | |
| IL_4WWW_042 | 1/QA/779:783, 1/QA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_39521.5 | |
| IL_4WWW_043 | 1/QA/887:894, 1/QA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.1 | |
| IL_4WWW_044 | 1/QA/922:923, 1/QA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_80007.16 | |
| IL_4WWW_045 | 1/QA/925:927, 1/QA/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_59137.10 | |
| IL_4WWW_046 | 1/QA/933:936, 1/QA/1379:1384 | No text annotation Not in a motif group | homologous IL_6CZR_149 IL_05523.1 | |
| IL_4WWW_047 | 1/QA/953:954, 1/QA/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_4WWW_048 | 1/QA/993:997, 1/QA/1044:1045 | Minor groove platform Not in a motif group | geometric IL_5J7L_043 IL_94431.4 | |
| IL_4WWW_049 | 1/QA/998:999, 1/QA/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_04038.4 | |
| IL_4WWW_050 | 1/QA/1048:1050, 1/QA/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.11 | |
| IL_4WWW_051 | 1/QA/1051:1056, 1/QA/1204:1207 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_85877.10 | |
| IL_4WWW_052 | 1/QA/1057:1058, 1/QA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_06437.11 | |
| IL_4WWW_053 | 1/QA/1060:1061, 1/QA/1195:1197 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_80007.16 | |
| IL_4WWW_054 | 1/QA/1061:1063, 1/QA/1193:1195 | No text annotation Not in a motif group | homologous IL_5J7L_050 IL_01312.13 | |
| IL_4WWW_055 | 1/QA/1124:1129, 1/QA/1143:1149 | No text annotation Not in a motif group | ||
| IL_4WWW_056 | 1/QA/1129:1132, 1/QA/1142:1143 | Minor groove platform Not in a motif group | geometric IL_5J7L_052 IL_94431.4 | |
| IL_4WWW_057 | 1/QA/1158:1161, 1/QA/1175:1181 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
| IL_4WWW_058 | 1/QA/1247:1253, 1/QA/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_4WWW_059 | 1/QA/1255:1258, 1/QA/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.2 | |
| IL_4WWW_060 | 1/QA/1259:1263, 1/QA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.6 | |
| IL_4WWW_061 | 1/QA/1303:1308, 1/QA/1329:1334 | No text annotation Not in a motif group | geometric IL_5J7L_057 IL_19954.1 | |
| IL_4WWW_062 | 1/QA/1399:1401, 1/QA/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.2 | |
| IL_4WWW_063 | 1/QA/1401:1404, 1/QA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_59281.1 | |
| IL_4WWW_064 | 1/QA/1405:1407, 1/QA/1494:1496 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_01312.13 | |
| IL_4WWW_065 | 1/QA/1407:1409, 1/QA/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_04038.4 | |
| IL_4WWW_066 | 1/QA/1412:1414, 1/QA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_01312.13 | |
| IL_4WWW_067 | 1/QA/1416:1419, 1/QA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.7 | |
| IL_4WWW_068 | 1/QA/1430:1435, 1/QA/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.1 | |
| IL_4WWW_069 | 1/QA/1440:1442, 1/QA/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_06437.11 | |
| IL_4WWW_070 | 1/QA/1445:1448, 1/QA/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.3 | |
| IL_4WWW_071 | 1/RA/24:30, 1/RA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5J7L_245 IL_66414.5 | |
| IL_4WWW_072 | 1/RA/36:37, 1/RA/442:444 | Single bulged A Not in a motif group | homologous IL_5J7L_246 IL_80007.16 | |
| IL_4WWW_073 | 1/RA/43:44, 1/RA/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_06437.11 | |
| IL_4WWW_074 | 1/RA/81:85, 1/RA/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_85931.1 | |
| IL_4WWW_076 | 1/RA/183:184, 1/RA/212:214 | Single stack bend Not in a motif group | homologous IL_5J7L_249 IL_04038.4 | |
| IL_4WWW_077 | 1/RA/188:194, 1/RA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_250 IL_04346.5 | |
| IL_4WWW_078 | 1/RA/239:245, 1/RA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_35110.5 | |
| IL_4WWW_079 | 1/RA/269:271, 1/RA/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_4WWW_080 | 1/RA/274:281, 1/RA/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4WWW_081 | 1/RA/293:295, 1/RA/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_4WWW_082 | 1/RA/481:484, 1/RA/496:509 | No text annotation Not in a motif group | homologous IL_5J7L_255 IL_60992.5 | |
| IL_4WWW_083 | 1/RA/536:539, 1/RA/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.7 | |
| IL_4WWW_084 | 1/RA/564:566, 1/RA/575:577 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_01312.13 | |
| IL_4WWW_085 | 1/RA/606:610, 1/RA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_56467.6 | |
| IL_4WWW_086 | 1/RA/672:674, 1/RA/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_01312.13 | |
| IL_4WWW_087 | 1/RA/674:678, 1/RA/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_5J7L_260 IL_17470.5 | |
| IL_4WWW_088 | 1/RA/697:698, 1/RA/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_80007.16 | |
| IL_4WWW_089 | 1/RA/702:703, 1/RA/728:730 | Single bulged G Not in a motif group | geometric IL_5J7L_262 IL_59137.10 | |
| IL_4WWW_090 | 1/RA/703:707, 1/RA/724:728 | Triple sheared Not in a motif group | homologous IL_5J7L_263 IL_56467.6 | |
| IL_4WWW_091 | 1/RA/738:740, 1/RA/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_80663.10 | |
| IL_4WWW_092 | 1/RA/775:777, 1/RA/787:791 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.5 | |
| IL_4WWW_093 | 1/RA/844:847, 1/RA/933:934 | Other IL Not in a motif group | homologous IL_5J7L_267 IL_31836.1 | |
| IL_4WWW_094 | 1/RA/847:848, 1/RA/930:933 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
| IL_4WWW_095 | 1/RA/850:851, 1/RA/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_04038.4 | |
| IL_4WWW_096 | 1/RA/856:862, 1/RA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.2 | |
| IL_4WWW_097 | 1/RA/862:863, 1/RA/913:915 | Single bulged G Not in a motif group | homologous IL_5J7L_271 IL_59137.10 | |
| IL_4WWW_098 | 1/RA/864:868, 1/RA/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.4 | |
| IL_4WWW_099 | 1/RA/870:872, 1/RA/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_01312.13 | |
| IL_4WWW_100 | 1/RA/875:879, 1/RA/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.6 | |
| IL_4WWW_101 | 1/RA/880:881, 1/RA/895:897 | Single bulged A Not in a motif group | homologous IL_7RQB_033 IL_80007.16 | |
| IL_4WWW_102 | 1/RA/994:996, 1/RA/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.10 | |
| IL_4WWW_103 | 1/RA/998:1002, 1/RA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_53523.5 | |
| IL_4WWW_104 | 1/RA/1004:1011, 1/RA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.6 | |
| IL_4WWW_105 | 1/RA/1011:1013, 1/RA/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.11 | |
| IL_4WWW_106 | 1/RA/1018:1024, 1/RA/1140:1144 | No text annotation Not in a motif group | geometric IL_5J7L_280 IL_57188.3 | |
| IL_4WWW_107 | 1/RA/1024:1030, 1/RA/1124:1140 | No text annotation Not in a motif group | homologous IL_5J7L_281 IL_22615.1 | |
| IL_4WWW_108 | 1/RA/1031:1034, 1/RA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_55456.1 | |
| IL_4WWW_109 | 1/RA/1038:1041, 1/RA/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_85877.10 | |
| IL_4WWW_110 | 1/RA/1043:1051, 1/RA/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.3 | |
| IL_4WWW_111 | 1/RA/1059:1062, 1/RA/1076:1079 | No text annotation Not in a motif group | homologous IL_6PRV_001 IL_23544.2 | |
| IL_4WWW_112 | 1/RA/1087:1090, 1/RA/1101:1102 | No text annotation Not in a motif group | homologous IL_6PRV_002 NA | |
| IL_4WWW_113 | 1/RA/1168:1172, 1/RA/1177:1181 | No text annotation Not in a motif group | ||
| IL_4WWW_114 | 1/RA/1196:1198, 1/RA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_67621.5 | |
| IL_4WWW_115 | 1/RA/1202:1206, 1/RA/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_4WWW_116 | 1/RA/1208:1215, 1/RA/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_29549.9 | |
| IL_4WWW_117 | 1/RA/1262:1269, 1/RA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 |