Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8FIZ_0011/AA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_8FIZ_0021/AA/75:95No text annotation
Not in a motif group
HL_8FIZ_0031/AA/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_35490.2
HL_8FIZ_0041/AA/184:193No text annotation
Not in a motif group
HL_8FIZ_0051/AA/207:212No text annotation
Not in a motif group
geometric
HL_6JQ6_004
HL_03562.2
HL_8FIZ_0061/AA/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_8FIZ_0071/AA/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_35490.2
HL_8FIZ_0081/AA/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_8FIZ_0091/AA/342:347UNCG
Not in a motif group
homologous
HL_5J7L_009
HL_03562.2
HL_8FIZ_0101/AA/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_35490.2
HL_8FIZ_0111/AA/419:424UNCG
Not in a motif group
homologous
HL_4LFB_011
HL_03562.2
HL_8FIZ_0121/AA/462:470No text annotation
Not in a motif group
HL_8FIZ_0131/AA/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_70546.1
HL_8FIZ_0141/AA/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.3
HL_8FIZ_0151/AA/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_8FIZ_0161/AA/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_8FIZ_0171/AA/786:796No text annotation
Not in a motif group
homologous
HL_6CZR_088
HL_12326.1
HL_8FIZ_0181/AA/839:847No text annotation
Not in a motif group
HL_8FIZ_0191/AA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_35490.2
HL_8FIZ_0201/AA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_35490.2
HL_8FIZ_0211/AA/963:972No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_8FIZ_0221/AA/1012:1017No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_8FIZ_0231/AA/1076:1081GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_35490.2
HL_8FIZ_0241/AA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_8FIZ_0251/AA/1134:1141No text annotation
Not in a motif group
HL_8FIZ_0261/AA/1165:1171No text annotation
Not in a motif group
homologous
HL_5J7L_026
HL_90617.3
HL_8FIZ_0271/AA/1265:1270No text annotation
Not in a motif group
HL_8FIZ_0281/AA/1310:1327No text annotation
Not in a motif group
HL_8FIZ_0291/AA/1356:1366No text annotation
Not in a motif group
homologous
HL_5J7L_029
HL_96366.1
HL_8FIZ_0301/AA/1449:1454UNCG
Not in a motif group
homologous
HL_4LFB_031
HL_03562.2
HL_8FIZ_0311/AA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_8FIZ_0321/BA/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_18177.1
HL_8FIZ_0331/BA/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_03186.1
HL_8FIZ_0341/BA/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_70546.1
HL_8FIZ_0351/BA/137:142No text annotation
Not in a motif group
geometric
HL_5TBW_004
HL_98426.1
HL_8FIZ_0361/BA/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_8FIZ_0371/BA/194:201No text annotation
Not in a motif group
geometric
HL_4WF9_006
HL_06192.2
HL_8FIZ_0381/BA/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_56241.1
HL_8FIZ_0391/BA/246:252No text annotation
Not in a motif group
homologous
HL_7A0S_008
HL_67216.7
HL_8FIZ_0401/BA/305:312No text annotation
Not in a motif group
homologous
HL_7A0S_010
HL_41998.1
HL_8FIZ_0411/BA/319:323No text annotation
Not in a motif group
homologous
HL_7A0S_011
HL_70546.1
HL_8FIZ_0421/BA/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.9
HL_8FIZ_0431/BA/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_8FIZ_0441/BA/410:417No text annotation
Not in a motif group
homologous
HL_7A0S_014
HL_96598.1
HL_8FIZ_0451/BA/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_35490.2
HL_8FIZ_0461/BA/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_35490.2
HL_8FIZ_0471/BA/543:550No text annotation
Not in a motif group
HL_8FIZ_0481/BA/566:575T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_4WF9_018
HL_41998.1
HL_8FIZ_0491/BA/611:617No text annotation
Not in a motif group
HL_8FIZ_0501/BA/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_35490.2
HL_8FIZ_0511/BA/641:647No text annotation
Not in a motif group
homologous
HL_5J7L_153
HL_77805.2
HL_8FIZ_0521/BA/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_8FIZ_0531/BA/742:755No text annotation
Not in a motif group
HL_8FIZ_0541/BA/779:785No text annotation
Not in a motif group
homologous
HL_5J7L_156
HL_74322.1
HL_8FIZ_0551/BA/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_53619.1
HL_8FIZ_0561/BA/883:893No text annotation
Not in a motif group
geometric
HL_4V9F_003
HL_52841.1
HL_8FIZ_0571/BA/955:962No text annotation
Not in a motif group
homologous
HL_7A0S_026
HL_35490.2
HL_8FIZ_0581/BA/978:985No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_8FIZ_0591/BA/1063:1075No text annotation
Not in a motif group
HL_8FIZ_0601/BA/1170:1179No text annotation
Not in a motif group
HL_8FIZ_0611/BA/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_8FIZ_0621/BA/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_41998.1
HL_8FIZ_0631/BA/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_8FIZ_0641/BA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_8FIZ_0651/BA/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_8FIZ_0661/BA/1451:1459No text annotation
Not in a motif group
homologous
HL_5J7L_169
HL_53837.2
HL_8FIZ_0671/BA/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_8FIZ_0681/BA/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_03562.2
HL_8FIZ_0691/BA/1565:1568No text annotation
Not in a motif group
homologous
HL_5J7L_172
HL_38927.5
HL_8FIZ_0701/BA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_8FIZ_0711/BA/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_35490.2
HL_8FIZ_0721/BA/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_8FIZ_0731/BA/1728:1731No text annotation
Not in a motif group
homologous
HL_5J7L_176
HL_98426.1
HL_8FIZ_0741/BA/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_76539.5
HL_8FIZ_0751/BA/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_8FIZ_0761/BA/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_35490.2
HL_8FIZ_0771/BA/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_35490.2
HL_8FIZ_0781/BA/1910:1920No text annotation
Not in a motif group
geometric
HL_2Y9H_003
HL_16173.1
HL_8FIZ_0791/BA/1949:1957No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_51824.1
HL_8FIZ_0801/BA/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_8FIZ_0811/BA/2143:2148No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_70072.1
HL_8FIZ_0821/BA/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_8FIZ_0831/BA/2248:2256No text annotation
Not in a motif group
homologous
HL_7A0S_052
HL_53171.2
HL_8FIZ_0841/BA/2264:2276No text annotation
Not in a motif group
homologous
HL_5J7L_187
HL_19870.6
HL_8FIZ_0851/BA/2303:2313No text annotation
Not in a motif group
homologous
HL_5J7L_188
HL_11805.3
HL_8FIZ_0861/BA/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.4
HL_8FIZ_0871/BA/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_8FIZ_0881/BA/2374:2379GNRA
Not in a motif group
homologous
HL_5J7L_191
HL_35490.2
HL_8FIZ_0891/BA/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_40210.2
HL_8FIZ_0901/BA/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_8FIZ_0911/BA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_91104.1
HL_8FIZ_0921/BA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_8FIZ_0931/BA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_35490.2
HL_8FIZ_0941/BA/2658:2663GNRA
Not in a motif group
geometric
HL_4V9F_066
HL_35490.2
HL_8FIZ_0951/BA/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_8FIZ_0961/BA/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_8FIZ_0971/BA/2796:2799No text annotation
Not in a motif group
geometric
HL_4V88_192
HL_53837.2
HL_8FIZ_0981/BA/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_64690.1
HL_8FIZ_0991/BA/2856:2861No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_35490.2
HL_8FIZ_1001/BB/12:24No text annotation
Not in a motif group
HL_8FIZ_1011/BB/32:40tRNA anticodon loop
Not in a motif group
homologous
HL_6UFG_007
HL_53597.4
HL_8FIZ_1021/BB/54:62T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4V9Q_215
HL_22280.4
HL_8FIZ_1031/BC/38:44No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.5
HL_8FIZ_1041/BC/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.5

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8FIZ_0011/AA/30:32,
1/AA/552:553
Single bulged G
Not in a motif group
homologous
IL_5J7L_001
IL_00225.3
IL_8FIZ_0021/AA/44:45,
1/AA/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.6
IL_8FIZ_0031/AA/47:52,
1/AA/359:361
No text annotation
Not in a motif group
homologous
IL_5J7L_003
IL_14177.1
IL_8FIZ_0041/AA/54:56,
1/AA/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_80097.1
IL_8FIZ_0051/AA/63:66,
1/AA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_005
IL_76389.1
IL_8FIZ_0061/AA/67:69,
1/AA/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_8FIZ_0071/AA/70:73,
1/AA/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_8FIZ_0081/AA/128:131,
1/AA/231:233
No text annotation
Not in a motif group
IL_8FIZ_0091/AA/132:136,
1/AA/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_8FIZ_0101/AA/138:141,
1/AA/222:225
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1MFQ_004
IL_30621.4
IL_8FIZ_0111/AA/144:146,
1/AA/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_70707.2
IL_8FIZ_0121/AA/147:153,
1/AA/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_8FIZ_0131/AA/203:207,
1/AA/212:214
No text annotation
Not in a motif group
homologous
IL_5J7L_013
IL_33912.1
IL_8FIZ_0141/AA/242:247,
1/AA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
geometric
IL_4V88_402
IL_45067.2
IL_8FIZ_0151/AA/249:252,
1/AA/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_8FIZ_0161/AA/292:293,
1/AA/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_8FIZ_0171/AA/367:369,
1/AA/392:393
Single bulged U
Not in a motif group
homologous
IL_5J7L_017
IL_83039.16
IL_8FIZ_0181/AA/371:375,
1/AA/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_8FIZ_0191/AA/375:376,
1/AA/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.3
IL_8FIZ_0201/AA/409:416,
1/AA/427:433
No text annotation
Not in a motif group
homologous
IL_5J7L_020
IL_28026.1
IL_8FIZ_0211/AA/440:442,
1/AA/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_8FIZ_0221/AA/446:450,
1/AA/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_8FIZ_0231/AA/450:455,
1/AA/477:483
No text annotation
Not in a motif group
geometric
IL_5J7L_023
IL_70801.1
IL_8FIZ_0241/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_8FIZ_0251/AA/515:521,
1/AA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_8FIZ_0261/AA/569:575,
1/AA/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_8FIZ_0271/AA/580:584,
1/AA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_8FIZ_0281/AA/594:596,
1/AA/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.3
IL_8FIZ_0291/AA/597:599,
1/AA/639:643
No text annotation
Not in a motif group
IL_8FIZ_0301/AA/605:612,
1/AA/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_8FIZ_0311/AA/654:655,
1/AA/751:754
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_50694.2
IL_8FIZ_0321/AA/658:659,
1/AA/746:748
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.4
IL_8FIZ_0331/AA/662:666,
1/AA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_8FIZ_0341/AA/673:678,
1/AA/712:717
No text annotation
Not in a motif group
geometric
IL_4LFB_030
IL_04668.2
IL_8FIZ_0351/AA/684:688,
1/AA/699:706
No text annotation
Not in a motif group
IL_8FIZ_0361/AA/774:779,
1/AA/803:805
No text annotation
Not in a motif group
IL_8FIZ_0371/AA/779:783,
1/AA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_8FIZ_0381/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_8FIZ_0391/AA/922:923,
1/AA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.6
IL_8FIZ_0401/AA/925:927,
1/AA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.3
IL_8FIZ_0411/AA/933:935,
1/AA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_8FIZ_0421/AA/953:954,
1/AA/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.4
IL_8FIZ_0431/AA/984:987,
1/AA/1217:1220
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4K27_001
IL_30621.4
IL_8FIZ_0441/AA/987:990,
1/AA/1215:1217
No text annotation
Not in a motif group
IL_8FIZ_0451/AA/993:1002,
1/AA/1038:1045
No text annotation
Not in a motif group
IL_8FIZ_0461/AA/1002:1006,
1/AA/1023:1038
No text annotation
Not in a motif group
IL_8FIZ_0471/AA/1048:1050,
1/AA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.16
IL_8FIZ_0481/AA/1052:1056,
1/AA/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_8FIZ_0491/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_80097.1
IL_8FIZ_0501/AA/1060:1061,
1/AA/1195:1197
Single bulged A
Not in a motif group
geometric
IL_5J7L_049
IL_37497.6
IL_8FIZ_0511/AA/1061:1063,
1/AA/1193:1195
No text annotation
Not in a motif group
homologous
IL_4LFB_047
IL_86319.2
IL_8FIZ_0521/AA/1124:1128,
1/AA/1144:1149
No text annotation
Not in a motif group
IL_8FIZ_0531/AA/1129:1132,
1/AA/1142:1143
Multiple bulged bases
Not in a motif group
geometric
IL_5W1H_001
IL_44546.1
IL_8FIZ_0541/AA/1132:1134,
1/AA/1141:1142
No text annotation
Not in a motif group
IL_8FIZ_0551/AA/1158:1161,
1/AA/1175:1181
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_8FIZ_0561/AA/1255:1258,
1/AA/1277:1282
No text annotation
Not in a motif group
homologous
IL_5J7L_055
IL_75461.4
IL_8FIZ_0571/AA/1259:1263,
1/AA/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_8FIZ_0581/AA/1353:1355,
1/AA/1367:1369
Isolated cWH basepair
Not in a motif group
geometric
IL_3R1C_032
NA
IL_8FIZ_0591/AA/1399:1401,
1/AA/1501:1504
No text annotation
Not in a motif group
geometric
IL_5J7L_058
IL_36143.3
IL_8FIZ_0601/AA/1401:1405,
1/AA/1496:1501
No text annotation
Not in a motif group
IL_8FIZ_0611/AA/1405:1407,
1/AA/1494:1496
No text annotation
Not in a motif group
geometric
IL_5VCI_002
IL_86319.2
IL_8FIZ_0621/AA/1407:1409,
1/AA/1491:1494
No text annotation
Not in a motif group
IL_8FIZ_0631/AA/1412:1414,
1/AA/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_86319.2
IL_8FIZ_0641/AA/1416:1419,
1/AA/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.10
IL_8FIZ_0651/AA/1430:1435,
1/AA/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_8FIZ_0661/AA/1440:1442,
1/AA/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.4
IL_8FIZ_0671/AA/1445:1448,
1/AA/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.7
IL_8FIZ_0681/BA/24:30,
1/BA/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_245
IL_66414.6
IL_8FIZ_0691/BA/36:37,
1/BA/442:444
Single bulged A
Not in a motif group
homologous
IL_5J7L_246
IL_37497.6
IL_8FIZ_0701/BA/43:44,
1/BA/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.4
IL_8FIZ_0711/BA/81:85,
1/BA/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_8FIZ_0721/BA/183:184,
1/BA/212:214
Single stack bend
Not in a motif group
homologous
IL_7A0S_005
IL_76488.4
IL_8FIZ_0731/BA/188:194,
1/BA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7A0S_006
IL_04346.7
IL_8FIZ_0741/BA/239:245,
1/BA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_8FIZ_0751/BA/269:271,
1/BA/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_8FIZ_0761/BA/274:281,
1/BA/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_8FIZ_0771/BA/293:295,
1/BA/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_8FIZ_0781/BA/481:484,
1/BA/496:509
No text annotation
Not in a motif group
homologous
IL_5J7L_255
IL_60992.6
IL_8FIZ_0791/BA/536:539,
1/BA/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.10
IL_8FIZ_0801/BA/564:566,
1/BA/575:577
No text annotation
Not in a motif group
homologous
IL_4WF9_017
IL_86319.2
IL_8FIZ_0811/BA/606:610,
1/BA/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_8FIZ_0821/BA/672:674,
1/BA/806:808
No text annotation
Not in a motif group
homologous
IL_7RQB_017
IL_86319.2
IL_8FIZ_0831/BA/674:678,
1/BA/799:806
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_5J7L_260
IL_17470.6
IL_8FIZ_0841/BA/697:698,
1/BA/763:765
Single bulged A
Not in a motif group
homologous
IL_5J7L_261
IL_37497.6
IL_8FIZ_0851/BA/702:703,
1/BA/728:730
Single bulged G
Not in a motif group
geometric
IL_7A0S_017
IL_00225.3
IL_8FIZ_0861/BA/703:707,
1/BA/724:728
Triple sheared
Not in a motif group
homologous
IL_7RQB_021
IL_56467.8
IL_8FIZ_0871/BA/738:740,
1/BA/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.3
IL_8FIZ_0881/BA/775:777,
1/BA/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_265
IL_90991.6
IL_8FIZ_0891/BA/844:847,
1/BA/933:934
Other IL
Not in a motif group
geometric
IL_5J7L_267
IL_92001.1
IL_8FIZ_0901/BA/847:848,
1/BA/930:933
Stack outside cWW
Not in a motif group
homologous
IL_5J7L_268
IL_37629.1
IL_8FIZ_0911/BA/850:851,
1/BA/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.4
IL_8FIZ_0921/BA/856:862,
1/BA/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_5J7L_270
IL_93830.3
IL_8FIZ_0931/BA/862:863,
1/BA/913:915
Single bulged G
Not in a motif group
homologous
IL_5J7L_271
IL_00225.3
IL_8FIZ_0941/BA/864:868,
1/BA/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_8FIZ_0951/BA/870:872,
1/BA/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_86319.2
IL_8FIZ_0961/BA/875:879,
1/BA/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_8FIZ_0971/BA/880:883,
1/BA/893:897
No text annotation
Not in a motif group
IL_8FIZ_0981/BA/994:996,
1/BA/1159:1160
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_8FIZ_0991/BA/998:1002,
1/BA/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_7A0S_033
IL_89002.2
IL_8FIZ_1001/BA/1004:1011,
1/BA/1150:1151
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_5J7L_278
IL_15861.7
IL_8FIZ_1011/BA/1011:1013,
1/BA/1149:1150
Single bulged U
Not in a motif group
homologous
IL_5J7L_279
IL_83039.16
IL_8FIZ_1021/BA/1018:1024,
1/BA/1140:1144
No text annotation
Not in a motif group
geometric
IL_5J7L_280
IL_57188.3
IL_8FIZ_1031/BA/1024:1030,
1/BA/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_8FIZ_1041/BA/1031:1034,
1/BA/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_7A0S_038
IL_43275.1
IL_8FIZ_1051/BA/1034:1036,
1/BA/1118:1121
No text annotation
Not in a motif group
IL_8FIZ_1061/BA/1036:1038,
1/BA/1117:1118
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.4
IL_8FIZ_1071/BA/1038:1041,
1/BA/1114:1117
No text annotation
Not in a motif group
IL_8FIZ_1081/BA/1043:1052,
1/BA/1107:1112
No text annotation
Not in a motif group
IL_8FIZ_1091/BA/1196:1198,
1/BA/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_044
IL_52767.4
IL_8FIZ_1101/BA/1202:1206,
1/BA/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_8FIZ_1111/BA/1208:1215,
1/BA/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_8FIZ_1121/BA/1262:1269,
1/BA/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_8FIZ_1131/BA/1310:1313,
1/BA/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_290
IL_50694.2
IL_8FIZ_1141/BA/1319:1323,
1/BA/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_8FIZ_1151/BA/1351:1355,
1/BA/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_8FIZ_1161/BA/1357:1361,
1/BA/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_8FIZ_1171/BA/1415:1416,
1/BA/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_8FIZ_1181/BA/1417:1421,
1/BA/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_8FIZ_1191/BA/1430:1432,
1/BA/1561:1563
No text annotation
Not in a motif group
geometric
IL_4V9F_105
IL_86319.2
IL_8FIZ_1201/BA/1432:1435,
1/BA/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5J7L_296
IL_55178.1
IL_8FIZ_1211/BA/1437:1440,
1/BA/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_8FIZ_1221/BA/1450:1451,
1/BA/1459:1461
Single bulged U
Not in a motif group
geometric
IL_5TBW_146
IL_83039.16
IL_8FIZ_1231/BA/1468:1471,
1/BA/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_8FIZ_1241/BA/1474:1478,
1/BA/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_8FIZ_1251/BA/1481:1482,
1/BA/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_8FIZ_1261/BA/1489:1491,
1/BA/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.6
IL_8FIZ_1271/BA/1526:1529,
1/BA/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_8FIZ_1281/BA/1651:1656,
1/BA/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_8FIZ_1291/BA/1663:1665,
1/BA/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.7
IL_8FIZ_1301/BA/1666:1669,
1/BA/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_066
IL_50694.2
IL_8FIZ_1311/BA/1669:1674,
1/BA/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_4WF9_065
IL_76273.1
IL_8FIZ_1321/BA/1686:1691,
1/BA/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_5J7L_308
IL_65969.2
IL_8FIZ_1331/BA/1712:1718,
1/BA/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_8FIZ_1341/BA/1720:1724,
1/BA/1736:1740
Triple sheared
Not in a motif group
geometric
IL_5J7L_274
IL_56467.8
IL_8FIZ_1351/BA/1727:1728,
1/BA/1731:1733
Single bulged C
Not in a motif group
geometric
IL_5J7L_311
IL_61258.12
IL_8FIZ_1361/BA/1770:1771,
1/BA/1980:1982
Single bulged A
Not in a motif group
homologous
IL_4WF9_068
IL_37497.6
IL_8FIZ_1371/BA/1798:1804,
1/BA/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7A0S_065
IL_17069.3
IL_8FIZ_1381/BA/1837:1840,
1/BA/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.3
IL_8FIZ_1391/BA/1841:1842,
1/BA/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_8FIZ_1401/BA/1846:1849,
1/BA/1893:1894
Minor groove platform
Not in a motif group
geometric
IL_4KQY_004
IL_95601.3
IL_8FIZ_1411/BA/1864:1867,
1/BA/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.2
IL_8FIZ_1421/BA/1933:1934,
1/BA/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_7A0S_071
IL_59677.2
IL_8FIZ_1431/BA/1934:1945,
1/BA/1961:1964
No text annotation
Not in a motif group
homologous
IL_7A0S_072
IL_81589.2
IL_8FIZ_1441/BA/2050:2052,
1/BA/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.3
IL_8FIZ_1451/BA/2054:2056,
1/BA/2612:2615
No text annotation
Not in a motif group
homologous
IL_4WF9_079
IL_54678.5
IL_8FIZ_1461/BA/2067:2071,
1/BA/2438:2443
No text annotation
Not in a motif group
IL_8FIZ_1471/BA/2081:2083,
1/BA/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_8FIZ_1481/BA/2085:2087,
1/BA/2232:2234
No text annotation
Not in a motif group
homologous
IL_7RQB_083
IL_86319.2
IL_8FIZ_1491/BA/2110:2128,
1/BA/2160:2179
No text annotation
Not in a motif group
IL_8FIZ_1501/BA/2129:2138,
1/BA/2153:2159
No text annotation
Not in a motif group
IL_8FIZ_1511/BA/2141:2143,
1/BA/2148:2150
No text annotation
Not in a motif group
IL_8FIZ_1521/BA/2202:2204,
1/BA/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.16
IL_8FIZ_1531/BA/2350:2353,
1/BA/2364:2367
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.10
IL_8FIZ_1541/BA/2401:2403,
1/BA/2414:2415
Single bulged U
Not in a motif group
homologous
IL_5J7L_334
IL_83039.16
IL_8FIZ_1551/BA/2453:2455,
1/BA/2496:2500
No text annotation
Not in a motif group
homologous
IL_5J7L_335
NA
IL_8FIZ_1561/BA/2457:2459,
1/BA/2493:2494
Major groove platform
Not in a motif group
homologous
IL_7A0S_085
IL_27635.3
IL_8FIZ_1571/BA/2459:2461,
1/BA/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_5J7L_337
IL_92788.2
IL_8FIZ_1581/BA/2466:2470,
1/BA/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_8FIZ_1591/BA/2507:2508,
1/BA/2580:2582
Major groove platform
Not in a motif group
homologous
IL_7A0S_088
IL_76223.2
IL_8FIZ_1601/BA/2510:2512,
1/BA/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_90933.2
IL_8FIZ_1611/BA/2512:2513,
1/BA/2571:2574
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_098