Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5IMQ_0011/4/13:22tRNA D-loop
homologous
HL_1QF6_001
HL_20811.4
HL_5IMQ_0021/4/31:39tRNA anticodon loop
homologous
HL_6UFG_007
HL_06059.5
HL_5IMQ_0031/4/53:61T-loop with 2 stacked bulged bases
homologous
HL_4LCK_003
HL_28252.6
HL_5IMQ_0041/5/13:22No text annotation
homologous
HL_5J8B_105
NA
HL_5IMQ_0051/5/30:40No text annotation
homologous
HL_6GSK_218
HL_36684.4
HL_5IMQ_0061/5/53:61T-loop with 2 stacked bulged bases
homologous
HL_5AXM_003
HL_28252.6
HL_5IMQ_1191/A/13:21No text annotation
HL_5IMQ_1071/A/79:90No text annotation
HL_5IMQ_0091/A/158:163GNRA
homologous
HL_4LFB_003
HL_37824.7
HL_5IMQ_1081/A/186:191No text annotation
homologous
HL_4LFB_004
HL_48417.5
HL_5IMQ_0111/A/200:217No text annotation
HL_5IMQ_0121/A/259:267GNRA related
homologous
HL_4LFB_006
HL_84299.4
HL_5IMQ_0131/A/296:301GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_5IMQ_1101/A/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_5IMQ_0141/A/322:332No text annotation
HL_5IMQ_0151/A/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_5IMQ_1111/A/378:385GNRA with near cWW
geometric
HL_2IL9_007
NA
HL_5IMQ_0161/A/379:384GNRA
homologous
HL_5J7L_010
HL_37824.7
HL_5IMQ_0171/A/419:424No text annotation
homologous
HL_6CZR_082
NA
HL_5IMQ_0181/A/457:475No text annotation
HL_5IMQ_0191/A/522:527No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_5IMQ_0201/A/617:623No text annotation
homologous
HL_5J7L_014
HL_10453.3
HL_5IMQ_0211/A/689:698No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_5IMQ_0221/A/726:731GNRA
homologous
HL_5J7L_016
HL_37824.7
HL_5IMQ_0231/A/786:796No text annotation
homologous
HL_5J7L_017
HL_75293.5
HL_5IMQ_0241/A/834:852No text annotation
HL_5IMQ_0251/A/862:867GNRA
homologous
HL_5J7L_019
HL_37824.7
HL_5IMQ_0261/A/897:902GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_5IMQ_0271/A/963:972No text annotation
homologous
HL_4LFB_021
HL_50779.4
HL_5IMQ_0281/A/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.7
HL_5IMQ_0291/A/1028B:1032ANo text annotation
homologous
HL_4LFB_023
NA
HL_5IMQ_0301/A/1076:1081GNRA
homologous
HL_4LFB_024
HL_37824.7
HL_5IMQ_0311/A/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_5IMQ_0321/A/1134:1140No text annotation
homologous
HL_6CZR_097
NA
HL_5IMQ_0331/A/1164:1172GNRA with extra cWW
geometric
HL_7A0S_056
HL_04259.3
HL_5IMQ_0341/A/1265:1270No text annotation
homologous
HL_6CZR_099
NA
HL_5IMQ_0351/A/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_5IMQ_1201/A/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_5IMQ_0371/A/1449:1454UNCG
homologous
HL_5J7L_030
HL_34617.5
HL_5IMQ_0381/A/1515:1520GNRA
homologous
HL_4LFB_032
HL_37824.7
HL_5IMQ_1211/D/60:67No text annotation
HL_5IMQ_0401/D/87:95Pseudoknot geometry
homologous
HL_4WF9_002
HL_77600.2
HL_5IMQ_0411/D/123:128No text annotation
homologous
HL_5J7L_136
HL_82710.2
HL_5IMQ_0421/D/137A:141ANo text annotation
HL_5IMQ_1121/D/151:175No text annotation
HL_5IMQ_0431/D/153:173No text annotation
HL_5IMQ_0441/D/188:208No text annotation
HL_5IMQ_0451/D/225:230No text annotation
homologous
HL_7RQB_007
NA
HL_5IMQ_0461/D/245:253No text annotation
geometric
HL_8H9D_001
NA
HL_5IMQ_0471/D/270J:270PNo text annotation
geometric
HL_5TBW_006
NA
HL_5IMQ_0481/D/305:312No text annotation
homologous
HL_7RQB_010
NA
HL_5IMQ_0491/D/319:323No text annotation
homologous
HL_5J7L_143
HL_75660.5
HL_5IMQ_0501/D/327:335T-loop with unstacked turn
homologous
HL_4WF9_012
HL_27670.2
HL_5IMQ_1221/D/382:392No text annotation
homologous
HL_9DFE_012
HL_91503.7
HL_5IMQ_1231/D/411:416No text annotation
HL_5IMQ_0531/D/462:467GNRA
homologous
HL_7A0S_015
HL_37824.7
HL_5IMQ_1241/D/487:493GNRA
homologous
HL_5J7L_148
HL_37824.7
HL_5IMQ_0551/D/544:549GNRA
geometric
HL_5VW1_001
HL_37824.7
HL_5IMQ_0561/D/566:575T-loop with 2 stacked bulged bases
geometric
HL_7A0S_018
HL_28252.6
HL_5IMQ_0571/D/629:634GNRA
homologous
HL_5J7L_152
HL_37824.7
HL_5IMQ_0581/D/640:647No text annotation
homologous
HL_7A0S_021
HL_28075.1
HL_5IMQ_0591/D/712:719No text annotation
homologous
HL_7RQB_022
NA
HL_5IMQ_0601/D/744:753No text annotation
homologous
HL_4WF9_023
HL_88205.2
HL_5IMQ_0611/D/779:785No text annotation
geometric
HL_7A0S_007
HL_53890.2
HL_5IMQ_1251/D/826:831No text annotation
homologous
HL_7A0S_024
HL_55195.3
HL_5IMQ_0631/D/875:902No text annotation
HL_5IMQ_0641/D/955:962GNRA
homologous
HL_4WF9_027
HL_37824.7
HL_5IMQ_0651/D/978:985No text annotation
homologous
HL_7RQB_028
NA
HL_5IMQ_0661/D/1092:1099No text annotation
geometric
HL_3IGI_004
HL_04783.2
HL_5IMQ_0671/D/1170:1179No text annotation
HL_5IMQ_0681/D/1221:1228tRNA anticodon loop
geometric
HL_3RG5_006
HL_04259.3
HL_5IMQ_0691/D/1281:1289No text annotation
homologous
HL_7RQB_033
NA
HL_5IMQ_0701/D/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_4WF9_033
HL_57176.2
HL_5IMQ_0711/D/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_5IMQ_1141/D/1389:1398No text annotation
homologous
HL_5J7L_168
HL_81545.2
HL_5IMQ_1261/D/1450:1461Pseudoknot
homologous
HL_7A0S_036
HL_93135.1
HL_5IMQ_0741/D/1491:1499No text annotation
HL_5IMQ_0751/D/1533:1538GNRA
geometric
HL_7RQB_071
NA
HL_5IMQ_0761/D/1612:1619No text annotation
homologous
HL_7A0S_040
HL_89567.2
HL_5IMQ_0771/D/1630A:1635No text annotation
homologous
HL_7RQB_041
NA
HL_5IMQ_0781/D/1691:1696UNCG
homologous
HL_4WF9_040
HL_34617.5
HL_5IMQ_0791/D/1725:1734No text annotation
HL_5IMQ_0801/D/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_5IMQ_0811/D/1776:1788No text annotation
HL_5IMQ_0821/D/1806:1811No text annotation
geometric
HL_8C3A_054
NA
HL_5IMQ_0831/D/1864:1878No text annotation
geometric
HL_5XUZ_001
HL_69752.2
HL_5IMQ_0841/D/1909:1921No text annotation
geometric
HL_5UD5_001
HL_48417.5
HL_5IMQ_1171/D/1950:1956Mini UNCG
geometric
HL_5T16_002
HL_56334.1
HL_5IMQ_0861/D/2027:2036No text annotation
homologous
HL_7RQB_050
NA
HL_5IMQ_0871/D/2143:2148No text annotation
geometric
HL_7RQB_011
NA
HL_5IMQ_0881/D/2207:2217No text annotation
geometric
HL_2Y9H_005
HL_86870.1
HL_5IMQ_1271/D/2249:2255No text annotation
HL_5IMQ_0901/D/2264:2276No text annotation
homologous
HL_4WF9_050
HL_91939.2
HL_5IMQ_1181/D/2304:2312No text annotation
HL_5IMQ_0921/D/2324:2331Pseudoknot geometry
geometric
HL_7RQB_056
NA
HL_5IMQ_0931/D/2355:2362GNRA with extra cWW
homologous
HL_4WF9_053
HL_04259.3
HL_5IMQ_0941/D/2374:2379GNRA
homologous
HL_4WF9_054
HL_37824.7
HL_5IMQ_0951/D/2404:2413No text annotation
homologous
HL_4WF9_055
HL_53454.2
HL_5IMQ_0961/D/2471:2479No text annotation
homologous
HL_4WF9_056
HL_32735.2
HL_5IMQ_0971/D/2528:2535No text annotation
homologous
HL_7A0S_060
HL_31585.3
HL_5IMQ_1281/D/2551:2557No text annotation
homologous
HL_5J7L_195
HL_30068.2
HL_5IMQ_0991/D/2594:2599GNRA
homologous
HL_7A0S_062
HL_37824.7
HL_5IMQ_1001/D/2658:2663GNRA related
geometric
HL_3OXE_002
HL_04783.2
HL_5IMQ_1011/D/2701:2706No text annotation
homologous
HL_7RQB_065
NA
HL_5IMQ_1291/D/2746:2758No text annotation
HL_5IMQ_1031/D/2819:2827No text annotation
homologous
HL_4WF9_064
HL_64690.6
HL_5IMQ_1041/D/2856:2861GNRA
homologous
HL_5J7L_202
HL_37824.7
HL_5IMQ_1051/E/38:44No text annotation
geometric
HL_5J7L_203
HL_47787.2
HL_5IMQ_1061/E/86:90GNRA
homologous
HL_5TBW_186
NA

Problematic loops

#loop idProblemSequence
HL_5IMQ_007No text annotation
HL_5IMQ_008No text annotation
HL_5IMQ_010No text annotation
HL_5IMQ_109No text annotation
HL_5IMQ_036No text annotation
HL_5IMQ_039No text annotation
HL_5IMQ_051No text annotation
HL_5IMQ_052No text annotation
HL_5IMQ_113tRNA anticodon loop
HL_5IMQ_054GNRA with extra cWW
HL_5IMQ_062No text annotation
HL_5IMQ_072No text annotation
HL_5IMQ_073No text annotation
HL_5IMQ_115No text annotation
HL_5IMQ_116No text annotation
HL_5IMQ_085No text annotation
HL_5IMQ_089No text annotation
HL_5IMQ_091No text annotation
HL_5IMQ_098No text annotation
HL_5IMQ_102No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5IMQ_0011/A/29:32,
1/A/552:554
Isolated non-canonical cWW pair
geometric
IL_3MEI_002
IL_87907.2
IL_5IMQ_0021/A/44:45,
1/A/396:398
Single bulged A
homologous
IL_4LFB_002
IL_31462.5
IL_5IMQ_0031/A/54:56,
1/A/356:357
Minor groove platform
homologous
IL_4LFB_004
IL_51454.2
IL_5IMQ_0041/A/63:66,
1/A/103:104
Multiple bulged bases
geometric
IL_4LFB_005
IL_82107.4
IL_5IMQ_1461/A/63:77,
1/A/92:104
No text annotation
IL_5IMQ_0051/A/66:73,
1/A/97:103
No text annotation
geometric
IL_5TBW_121
NA
IL_5IMQ_0061/A/129:131,
1/A/231:232
Multiple bulged bases
homologous
IL_6CZR_119
NA
IL_5IMQ_0071/A/132:136,
1/A/227:230
Minor groove platform related
homologous
IL_6CZR_120
NA
IL_5IMQ_0081/A/148:153,
1/A/168:174
tWH-tWH-tHW-tHW
homologous
IL_4LFB_009
IL_12745.1
IL_5IMQ_2111/A/186:186B,
1/A/191E:191
Isolated non-canonical cWW pair
homologous
IL_4LFB_010
IL_87907.2
IL_5IMQ_0101/A/242:247,
1/A/277:284
Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_5IMQ_1821/A/249:252,
1/A/274:275
No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_5IMQ_0121/A/292:293,
1/A/304:308
C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_5IMQ_0131/A/320:322,
1/A/332:333
Single stack bend
geometric
IL_4V83_236
IL_90729.1
IL_5IMQ_0141/A/371:375,
1/A/389:390
C-loop
homologous
IL_4LFB_015
IL_03109.3
IL_5IMQ_0151/A/375:376,
1/A/387:389
Single bulged G
geometric
IL_4LFB_016
IL_00225.13
IL_5IMQ_0161/A/409:416,
1/A/427:433
No text annotation
homologous
IL_4LFB_017
IL_28026.3
IL_5IMQ_0171/A/446:450,
1/A/483:488
6x5 Sarcin-Ricin; G-bulge
homologous
IL_6CZR_130
NA
IL_5IMQ_1521/A/450:455,
1/A/477:483
No text annotation
homologous
IL_4LFB_019
IL_31561.1
IL_5IMQ_0181/A/504:511,
1/A/540:541
SSU/LSU pseudoknot
homologous
IL_6CZR_132
NA
IL_5IMQ_1831/A/515:521,
1/A/528:536
Kink-turn related
homologous
IL_4LFB_021
IL_54177.4
IL_5IMQ_0201/A/580:584,
1/A/757:761
tSH-tHW-tHS
homologous
IL_6CZR_135
NA
IL_5IMQ_0211/A/594:597,
1/A/643:645
No text annotation
homologous
IL_6CZR_136
NA
IL_5IMQ_1841/A/597:598,
1/A/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.4
IL_5IMQ_1851/A/605:612,
1/A/628:633
No text annotation
homologous
IL_4LFB_026
IL_78349.3
IL_5IMQ_0241/A/657:658,
1/A/747:749
Major groove platform
homologous
IL_4LFB_028
IL_48076.6
IL_5IMQ_0251/A/662:666,
1/A/740:743
Tandem non-canonical cWW pairs
homologous
IL_4LFB_029
IL_85033.2
IL_5IMQ_1861/A/673:677,
1/A/713:717
Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_49751.4
IL_5IMQ_0271/A/683:688,
1/A/699:707
Kink-turn
homologous
IL_4LFB_031
IL_95727.1
IL_5IMQ_1551/A/774:778,
1/A/804:805
Left turn
homologous
IL_5J7L_036
IL_29346.2
IL_5IMQ_0291/A/779:783,
1/A/799:803
tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_5IMQ_0301/A/887:894,
1/A/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.4
IL_5IMQ_0311/A/922:923,
1/A/1393:1395
Single bulged A
homologous
IL_5J7L_039
IL_31462.5
IL_5IMQ_0321/A/925:927,
1/A/1390:1391
Single bulged G
homologous
IL_4LFB_036
IL_00225.13
IL_5IMQ_1571/A/933:935,
1/A/1380:1384
Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_5IMQ_0341/A/953:954,
1/A/1226:1228
Minor groove platform
homologous
IL_4LFB_038
IL_51454.2
IL_5IMQ_1871/A/1048:1050,
1/A/1208:1209
Single bulged U
homologous
IL_4LFB_042
IL_89505.4
IL_5IMQ_1881/A/1052:1056,
1/A/1204:1206
Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_5IMQ_1891/A/1057:1058,
1/A/1199:1203
Minor groove platform
homologous
IL_4LFB_045
IL_95583.2
IL_5IMQ_0381/A/1060:1061,
1/A/1195:1197
Single bulged U
homologous
IL_4LFB_046
IL_89505.4
IL_5IMQ_0391/A/1061:1063,
1/A/1193:1195
Isolated non-canonical cWW pair
geometric
IL_3RG5_002
IL_28037.2
IL_5IMQ_0401/A/1124:1127,
1/A/1145:1149
Minor groove platform
homologous
IL_6CZR_158
NA
IL_5IMQ_0411/A/1127:1132,
1/A/1142:1145
No text annotation
IL_5IMQ_0421/A/1247:1253,
1/A/1284:1290
No text annotation
homologous
IL_4LFB_051
IL_09129.2
IL_5IMQ_1901/A/1255:1258,
1/A/1277:1282
180 degree turn
homologous
IL_6CZR_161
NA
IL_5IMQ_0441/A/1259:1262,
1/A/1273:1276
Double sheared
geometric
IL_5J7L_256
IL_09705.15
IL_5IMQ_1911/A/1303:1310,
1/A/1327:1334
No text annotation
IL_5IMQ_0461/A/1399:1401,
1/A/1501:1504
No text annotation
geometric
IL_4V88_463
NA
IL_5IMQ_0471/A/1401:1404,
1/A/1497:1501
No text annotation
homologous
IL_5J7L_059
IL_65718.4
IL_5IMQ_1921/A/1405:1410,
1/A/1490:1496
No text annotation
IL_5IMQ_0491/A/1412:1414,
1/A/1487:1488
Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_5IMQ_1591/A/1412:1416,
1/A/1484:1488
Partly complementary
geometric
IL_8D29_010
IL_49751.4
IL_5IMQ_0501/A/1414:1416,
1/A/1484:1487
No text annotation
IL_5IMQ_0511/A/1416:1419,
1/A/1481:1484
Double sheared
geometric
IL_5J7L_062
IL_09705.15
IL_5IMQ_0521/A/1431:1435,
1/A/1466:1469
UAA/GAN variation
homologous
IL_4LFB_062
IL_77691.5
IL_5IMQ_0531/A/1435:1437,
1/A/1464:1466
Isolated non-canonical cWW pair
geometric
IL_4LFB_063
IL_87907.2
IL_5IMQ_0541/A/1440:1448,
1/A/1455:1461
No text annotation
IL_5IMQ_0551/D/24:30,
1/D/510:516
Triple sheared with non-canonical cWW
geometric
IL_7RQB_001
NA
IL_5IMQ_0561/D/36:37,
1/D/442:444
Single bulged A
homologous
IL_7A0S_002
IL_31462.5
IL_5IMQ_1931/D/43:44,
1/D/434:436
Minor groove platform
homologous
IL_9DFE_348
IL_51454.2
IL_5IMQ_0581/D/81:85,
1/D/97:105
Kink-turn
homologous
IL_7A0S_004
IL_94910.1
IL_5IMQ_0591/D/183:184,
1/D/212:214
Single stack bend
homologous
IL_4WF9_007
IL_90729.1
IL_5IMQ_1941/D/239:245,
1/D/253:258
No text annotation
homologous
IL_9DFE_007
IL_26307.2
IL_5IMQ_0621/D/272:273A,
1/D/363E:365
No text annotation
IL_5IMQ_1951/D/273E:283,
1/D/358:363A
No text annotation
IL_5IMQ_0631/D/285:286,
1/D/354:356
Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_5IMQ_0641/D/286:291,
1/D/349:354
No text annotation
IL_5IMQ_0651/D/292:295,
1/D/343:348
No text annotation
IL_5IMQ_0661/D/481:484,
1/D/496:509
No text annotation
geometric
IL_7RQB_014
NA
IL_5IMQ_0671/D/564:566,
1/D/575:577
Isolated non-canonical cWW pair
homologous
IL_7A0S_011
IL_07785.1
IL_5IMQ_1621/D/601:628,
1/D/635:656
No text annotation
IL_5IMQ_0681/D/672:674,
1/D/806:808
Isolated non-canonical cWW pair
geometric
IL_4LFB_010
IL_87907.2
IL_5IMQ_0691/D/674:678,
1/D/799:806
tHW-tHW cross-strand stack
homologous
IL_4WF9_021
IL_54041.2
IL_5IMQ_0701/D/697:698,
1/D/763:765
Single bulged A
geometric
IL_7RQB_019
NA
IL_5IMQ_0711/D/703:707,
1/D/724:729
Triple sheared
homologous
IL_5J7L_263
IL_50730.2
IL_5IMQ_0721/D/738:741,
1/D/756:758
Major groove platform with extra cWW
homologous
IL_7RQB_022
NA
IL_5IMQ_0731/D/837:838,
1/D/940:942
Single stack bend
homologous
IL_7A0S_022
IL_90729.1
IL_5IMQ_0741/D/844:846,
1/D/932:934
Isolated non-canonical cWW pair
geometric
IL_6WBR_001
IL_57744.1
IL_5IMQ_1631/D/844:850,
1/D/928:934
No text annotation
homologous
IL_9DFE_024
IL_68243.1
IL_5IMQ_0751/D/846:850,
1/D/928:932
No text annotation
geometric
IL_8VTW_025
NA
IL_5IMQ_1641/D/858:862,
1/D/915:919
No text annotation
homologous
IL_7A0S_111
IL_38862.4
IL_5IMQ_1961/D/862:863,
1/D/913:915
Minor groove platform
homologous
IL_9DFE_027
IL_51454.2
IL_5IMQ_1971/D/864:868,
1/D/909:912
No text annotation
homologous
IL_9DFE_028
IL_26222.2
IL_5IMQ_0791/D/952:954,
1/D/963:965
No text annotation
homologous
IL_7RQB_034
NA
IL_5IMQ_0801/D/994:996,
1/D/1159:1160
Single bulged C
homologous
IL_7A0S_032
IL_61258.15
IL_5IMQ_0811/D/998:1002,
1/D/1153:1157
UAA/GAN
homologous
IL_7A0S_033
IL_38507.2
IL_5IMQ_0821/D/1004:1011,
1/D/1150:1151
SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_5IMQ_0831/D/1011:1013,
1/D/1149:1150
Single bulged U
homologous
IL_7RQB_038
NA
IL_5IMQ_0841/D/1019:1031,
1/D/1123:1143
No text annotation
IL_5IMQ_1661/D/1019:1034,
1/D/1121:1143
No text annotation
IL_5IMQ_0851/D/1031:1034,
1/D/1121:1123
Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_5IMQ_1671/D/1040:1054,
1/D/1105:1115
No text annotation
IL_5IMQ_1981/D/1055:1092,
1/D/1099:1104
No text annotation
IL_5IMQ_1991/D/1196:1198,
1/D/1247:1250
No text annotation
homologous
IL_9DFE_044
IL_42997.3
IL_5IMQ_0881/D/1202:1207,
1/D/1239:1243
No text annotation
IL_5IMQ_0891/D/1208:1215,
1/D/1234:1238
Kink-turn
homologous
IL_7A0S_043
IL_70923.9
IL_5IMQ_1681/D/1219:1221,
1/D/1228:1230
Intercalated cWW
homologous
IL_7A0S_044
IL_31737.3
IL_5IMQ_0911/D/1262:1269,
1/D/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_5IMQ_0921/D/1319:1323,
1/D/1331:1333
C-loop
homologous
IL_7RQB_051
NA
IL_5IMQ_0931/D/1351:1355,
1/D/1376:1380
UAA/GAN
homologous
IL_7RQB_052
NA
IL_5IMQ_0941/D/1357:1361,
1/D/1370:1374
tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_5IMQ_0951/D/1415:1421,
1/D/1576:1587
No text annotation
IL_5IMQ_1701/D/1423:1430,
1/D/1563:1574
No text annotation
IL_5IMQ_2001/D/1432:1435,
1/D/1557:1561
No text annotation
IL_5IMQ_0971/D/1437:1440,
1/D/1551:1555
tSH-tHW
homologous
IL_7RQB_057
NA
IL_5IMQ_1711/D/1448:1449,
1/D/1462:1463
Single stack bend
homologous
IL_9DFE_057
IL_26793.1
IL_5IMQ_2011/D/1474:1483,
1/D/1506:1517
No text annotation
IL_5IMQ_0981/D/1489:1491,
1/D/1499:1500
Single bulged A
homologous
IL_5J7L_302
IL_31462.5
IL_5IMQ_2021/D/1525:1531,
1/D/1540:1546
No text annotation
IL_5IMQ_1001/D/1651:1656,
1/D/2004:2006
No text annotation
homologous
IL_4WF9_062
IL_12566.4
IL_5IMQ_1011/D/1663:1666,
1/D/1994:1997
No text annotation
IL_5IMQ_1021/D/1686:1691,
1/D/1696:1702
tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
NA
IL_5IMQ_1031/D/1717:1725,
1/D/1734:1742
No text annotation
geometric
IL_6ZDU_001
IL_99358.1
IL_5IMQ_1041/D/1770:1771,
1/D/1980:1982
Single bulged A
homologous
IL_4WF9_068
IL_31462.5
IL_5IMQ_1051/D/1798:1804,
1/D/1813:1821
Kink-turn related
homologous
IL_4WF9_069
IL_17069.5
IL_5IMQ_1741/D/1836:1840,
1/D/1902:1904
No text annotation
IL_5IMQ_1061/D/1837:1840,
1/D/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_5IMQ_1071/D/1841:1842,
1/D/1898:1901
Major groove intercalation
homologous
IL_5J7L_315
IL_82107.4
IL_5IMQ_1081/D/1846:1849,
1/D/1893:1894
Minor groove platform
homologous
IL_7RQB_073
NA
IL_5IMQ_1761/D/1851:1855,
1/D/1887:1891
UAA/GAN with extra pair
homologous
IL_4WF9_073
IL_89021.2
IL_5IMQ_1101/D/1856:1860,
1/D/1882:1886
Triple sheared
homologous
IL_4WF9_074
IL_66798.2
IL_5IMQ_1111/D/1933:1945,
1/D/1961:1967
No text annotation
IL_5IMQ_1121/D/2050:2052,
1/D/2617:2618
Major groove platform
homologous
IL_7RQB_078
NA
IL_5IMQ_2031/D/2054:2056,
1/D/2612:2615
No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_5IMQ_2041/D/2070:2071,
1/D/2438:2441
Minor groove platform
homologous
IL_7A0S_076
IL_51454.2
IL_5IMQ_1141/D/2081:2083,
1/D/2236:2239
Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_5IMQ_1151/D/2085:2087,
1/D/2232:2234
Isolated non-canonical cWW pair
homologous
IL_5J7L_326
IL_28037.2
IL_5IMQ_2051/D/2091:2093,
1/D/2196:2228
No text annotation
IL_5IMQ_1161/D/2106:2120,
1/D/2178:2183
No text annotation
IL_5IMQ_1171/D/2121:2128,
1/D/2160:2177
No text annotation
IL_5IMQ_2061/D/2129:2137,
1/D/2154:2159
No text annotation
IL_5IMQ_1191/D/2297:2299,
1/D/2317:2321
Isolated tHS basepair with bulges
geometric
IL_7RQB_082
NA
IL_5IMQ_1201/D/2350:2353,
1/D/2364:2367
Double sheared
geometric
IL_4WF9_087
IL_09705.15
IL_5IMQ_1211/D/2401:2403,
1/D/2414:2415
Major groove platform
homologous
IL_7RQB_090
NA
IL_5IMQ_1221/D/2453:2454,
1/D/2498:2500
Single stack bend
homologous
IL_7RQB_091
NA
IL_5IMQ_1231/D/2454:2455,
1/D/2496:2498
Major groove platform
geometric
IL_7RQB_092
NA
IL_5IMQ_1241/D/2455:2459,
1/D/2493:2496
No text annotation
geometric
IL_8C3A_111
NA
IL_5IMQ_2071/D/2457:2460,
1/D/2490:2494
No text annotation
IL_5IMQ_1251/D/2459:2462,
1/D/2488:2493
No text annotation
IL_5IMQ_1261/D/2466:2470,
1/D/2480:2484
Triple sheared
homologous
IL_7RQB_095
NA
IL_5IMQ_1271/D/2507:2508,
1/D/2580:2582
Major groove platform
homologous
IL_4WF9_094
IL_07039.3
IL_5IMQ_1281/D/2510:2512,
1/D/2574:2578
Isolated non-canonical cWW with bulges
homologous
IL_7A0S_089
IL_07785.1
IL_5IMQ_1291/D/2512:2513,
1/D/2571:2574
Multiple bulged bases
geometric
IL_7RQB_098
NA
IL_5IMQ_1301/D/2522:2523,
1/D/2540:2543
Major groove platform with intercalation
homologous
IL_4WF9_097
IL_02555.1
IL_5IMQ_1311/D/2591:2592,
1/D/2601:2603
Single bulged A
homologous
IL_7RQB_101
NA
IL_5IMQ_2081/D/2636:2640,
1/D/2774:2782
No text annotation
IL_5IMQ_1801/D/2649:2658,
1/D/2663:2671
No text annotation
IL_5IMQ_1341/D/2680:2686,
1/D/2723:2727
No text annotation
IL_5IMQ_1811/D/2680:2691,
1/D/2718:2727
No text annotation
IL_5IMQ_1351/D/2686:2691,
1/D/2718:2723
No text annotation
IL_5IMQ_2091/D/2695:2696,
1/D/2711:2714
Multiple bulged bases
homologous
IL_4WF9_103
IL_42626.2
IL_5IMQ_1371/D/2737:2742,
1/D/2762:2767
UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_49767.8
IL_5IMQ_1381/D/2838:2839,
1/D/2878:2880
Single bulged C
homologous
IL_7RQB_108
NA
IL_5IMQ_1391/D/2843:2845,
1/D/2871:2874
No text annotation
homologous
IL_4WF9_107
IL_31531.3
IL_5IMQ_1401/D/2847:2852,
1/D/2865:2869
tHS double platform
homologous
IL_7RQB_110
NA
IL_5IMQ_1411/E/17:18,
1/E/65:67
Major groove intercalation
homologous
IL_7RQB_111
NA
IL_5IMQ_2101/E/23:29,
1/E/55:60
No text annotation
IL_5IMQ_1431/E/30:32,
1/E/50:54
No text annotation
homologous
IL_4WF9_114
NA
IL_5IMQ_1441/E/34:38,
1/E/44:48
Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_5IMQ_1451/E/71:79,
1/E/97:105
Bacterial 5S Loop E
homologous
IL_7RQB_115
NA

Problematic loops

#loop idProblemSequence
IL_5IMQ_147Isolated non-canonical cWW pair
IL_5IMQ_009No text annotation
IL_5IMQ_148Tandem non-canonical cWW pairs
IL_5IMQ_011No text annotation
IL_5IMQ_149Single bulged G, near cWW
IL_5IMQ_150No text annotation
IL_5IMQ_151No text annotation
IL_5IMQ_019No text annotation
IL_5IMQ_0228-nt loop receptor
IL_5IMQ_023tSH-tHW-tHH-tHS
IL_5IMQ_153Isolated non-canonical cWW pair
IL_5IMQ_154No text annotation
IL_5IMQ_026No text annotation
IL_5IMQ_028Other IL
IL_5IMQ_156Isolated non-canonical cWW pair
IL_5IMQ_033No text annotation
IL_5IMQ_035Self complementary
IL_5IMQ_036Tandem non-canonical cWW pairs
IL_5IMQ_158No text annotation
IL_5IMQ_037No text annotation
IL_5IMQ_043No text annotation
IL_5IMQ_045No text annotation
IL_5IMQ_048No text annotation
IL_5IMQ_160No text annotation
IL_5IMQ_057Major groove platform with extra cWW
IL_5IMQ_0608x7 Sarcin-Ricin; G-bulge
IL_5IMQ_061Multiple bulged bases
IL_5IMQ_161No text annotation
IL_5IMQ_0765x5 Sarcin-Ricin with intercalated A; G-bulge
IL_5IMQ_077Isolated non-canonical cWW pair
IL_5IMQ_078No text annotation
IL_5IMQ_165Tandem non-canonical cWW pairs
IL_5IMQ_086No text annotation
IL_5IMQ_087Tandem non-canonical cWW pairs with near WC pairs
IL_5IMQ_090No text annotation
IL_5IMQ_169No text annotation
IL_5IMQ_096No text annotation
IL_5IMQ_172No text annotation
IL_5IMQ_099No text annotation
IL_5IMQ_173No text annotation
IL_5IMQ_175Tandem non-canonical cWW pairs
IL_5IMQ_109No text annotation
IL_5IMQ_113No text annotation
IL_5IMQ_177No text annotation
IL_5IMQ_118No text annotation
IL_5IMQ_178Triple sheared
IL_5IMQ_179No text annotation
IL_5IMQ_132No text annotation
IL_5IMQ_133No text annotation
IL_5IMQ_136Tandem non-canonical cWW pairs
IL_5IMQ_142No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5IMQ_0011/A/46:52,
1/A/359:369,
1/A/392:395
No text annotation
J3_5IMQ_0281/A/586:588,
1/A/651:655,
1/A/751:755
No text annotation
homologous
J3_4LFB_015
J3_17385.4
J3_5IMQ_0031/A/672:673,
1/A/717:725,
1/A/732:734
No text annotation
homologous
J3_4LFB_012
J3_11934.4
J3_5IMQ_0041/A/826:829,
1/A/857:861,
1/A/868:874
No text annotation
homologous
J3_4LFB_001
J3_85054.4
J3_5IMQ_0221/A/936:939,
1/A/1344:1350,
1/A/1372:1379
No text annotation
homologous
J3_5J7L_052
J3_25303.4
J3_5IMQ_0291/A/955:962,
1/A/973:984,
1/A/1221:1225
No text annotation
homologous
J3_4LFB_004
J3_83516.4
J3_5IMQ_0061/A/990:998,
1/A/1043:1047,
1/A/1210:1215
No text annotation
J3_5IMQ_0301/A/1003:1006,
1/A/1023:1027,
1/A/1034:1037
No text annotation
J3_5IMQ_0231/A/1063:1068,
1/A/1107:1113,
1/A/1187:1193
No text annotation
homologous
J3_5J7L_008
J3_08394.3
J3_5IMQ_0091/A/1073:1074,
1/A/1083:1086,
1/A/1099:1102
No text annotation
homologous
J3_4LFB_017
J3_79369.1
J3_5IMQ_0311/A/1116:1118,
1/A/1155:1161,
1/A/1175:1184
No text annotation
homologous
J3_4LFB_018
J3_17791.2
J3_5IMQ_0111/D/30:31,
1/D/474:481,
1/D/509:510
No text annotation
homologous
J3_7RQB_001
NA
J3_5IMQ_0241/D/32:35,
1/D/445:461,
1/D/468:473
No text annotation
homologous
J3_9DFE_003
J3_30040.2
J3_5IMQ_0321/D/56:57,
1/D/70:76,
1/D/110:114
No text annotation
homologous
J3_9DFE_004
J3_35667.2
J3_5IMQ_0331/D/683:689,
1/D/773:777,
1/D/787:794
No text annotation
J3_5IMQ_0141/D/698:700,
1/D/732:736,
1/D/760:763
No text annotation
homologous
J3_7RQB_005
NA
J3_5IMQ_0341/D/1298:1303,
1/D/1625:1627,
1/D/1639:1642
No text annotation
homologous
J3_4WF9_004
J3_32852.6
J3_5IMQ_0161/D/1344:1350,
1/D/1381:1386,
1/D/1401:1403
No text annotation
J3_5IMQ_0171/D/2091:2093,
1/D/2196:2205,
1/D/2219:2228
Kink-turn in J3
homologous
J3_5J7L_044
J3_89368.5
J3_5IMQ_0261/D/2282:2284,
1/D/2384:2395,
1/D/2421:2427
No text annotation
homologous
J3_9DFE_015
J3_20992.1
J3_5IMQ_0351/D/2295:2297,
1/D/2321:2323,
1/D/2332:2337
No text annotation
homologous
J3_9DFE_016
J3_61124.2
J3_5IMQ_0361/D/2517:2520,
1/D/2545:2547,
1/D/2561:2567
No text annotation
homologous
J3_9DFE_017
J3_32601.5
J3_5IMQ_0371/D/2814:2815,
1/D/2831:2836,
1/D/2882:2886
No text annotation
homologous
J3_9DFE_019
J3_76911.2
J3_5IMQ_0211/E/11:16,
1/E/68:69,
1/E/107:109
No text annotation
homologous
J3_7RQB_015
NA
J4_5IMQ_0011/4/7:10,
1/4/25:27,
1/4/43:49,
1/4/65:66
No text annotation
homologous
J4_7EQJ_002
J4_70449.27
J4_5IMQ_0141/5/5:10,
1/5/25:27,
1/5/43:49,
1/5/65:68
No text annotation
homologous
J4_6GSK_031
J4_13620.1
J4_5IMQ_0151/A/115:122,
1/A/239:240,
1/A/286:289,
1/A/311:312
No text annotation
homologous
J4_4LFB_001
J4_35578.3
J4_5IMQ_0161/A/142:144,
1/A/178:183,
1/A/194:198,
1/A/219:221
No text annotation
homologous
J4_4LFB_002
J4_88771.1
J4_5IMQ_0051/A/569:577,
1/A/764:769,
1/A/810:821,
1/A/879:881
No text annotation
J4_5IMQ_0171/A/943:946,
1/A/1235:1241,
1/A/1296:1303,
1/A/1334:1340
No text annotation
J4_5IMQ_0071/D/297:301,
1/D/316:319,
1/D/323:325,
1/D/337:341
No text annotation
J4_5IMQ_0181/D/1270:1276,
1/D/1294:1295,
1/D/1645:1648,
1/D/2009:2010
No text annotation
homologous
J4_9DFE_003
J4_64571.5
J4_5IMQ_0191/D/1444:1445,
1/D/1466:1473,
1/D/1518:1525,
1/D/1546:1547
No text annotation
J4_5IMQ_0101/D/1772:1776,
1/D/1788:1792,
1/D/1827:1830,
1/D/1975:1979
No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_5IMQ_0201/D/1833:1835,
1/D/1905:1907,
1/D/1923:1933,
1/D/1967:1972
No text annotation
J4_5IMQ_0211/D/2285:2289,
1/D/2343:2347,
1/D/2370:2372,
1/D/2381:2383
No text annotation
homologous
J4_7A0S_009
J4_04930.6
J4_5IMQ_0221/D/2643:2646,
1/D/2674:2676,
1/D/2731:2735,
1/D/2769:2771
No text annotation
homologous
J4_5J7L_028
J4_77044.4
J5_5IMQ_0011/A/36:39,
1/A/403:406,
1/A/436:443,
1/A/491:500,
1/A/545:548
No text annotation
homologous
J5_6CZR_007
NA
J5_5IMQ_0021/A/58:61,
1/A/106:113,
1/A/314:316,
1/A/337:339,
1/A/350:354
No text annotation
homologous
J5_4LFB_002
J5_59910.6
J5_5IMQ_0091/D/268:270C,
1/D/270W:273A,
1/D/363E:375,
1/D/399:406,
1/D/421:424
No text annotation
J5_5IMQ_0041/D/584:589,
1/D/668:671,
1/D/809:812,
1/D/1195:1196,
1/D/1250:1256
No text annotation
homologous
J5_7A0S_004
J5_74302.5
J5_5IMQ_0101/D/1306:1314,
1/D/1338:1343,
1/D/1404:1405,
1/D/1597:1611,
1/D/1620:1622
No text annotation
J5_5IMQ_0111/D/1666:1682,
1/D/1706:1716,
1/D/1743:1752,
1/D/1756:1764,
1/D/1988:1994
No text annotation
J5_5IMQ_0121/D/2057:2069,
1/D/2442:2453,
1/D/2500:2507,
1/D/2582:2588,
1/D/2606:2611
No text annotation
J5_5IMQ_0131/D/2074:2077,
1/D/2243:2246,
1/D/2258:2259,
1/D/2281:2282,
1/D/2427:2435
No text annotation
homologous
J5_4WF9_007
J5_39529.1
J6_5IMQ_0011/D/1305:1316,
1/D/1336:1350,
1/D/1381:1386,
1/D/1401:1405,
1/D/1597:1611,
1/D/1620:1623
No text annotation
J7_5IMQ_0021/D/817:822,
1/D/835:837,
1/D/942:946,
1/D/971:976,
1/D/987:991,
1/D/1163:1164,
1/D/1185:1190
No text annotation
J9_5IMQ_0021/D/45:54,
1/D/116:121,
1/D/130:131,
1/D/148:150,
1/D/176:184,
1/D/212:224,
1/D/231:235,
1/D/262:266,
1/D/426:433
No text annotation
J10_5IMQ_0021/D/6:15,
1/D/525:536,
1/D/557:564,
1/D/577:579,
1/D/1261:1262,
1/D/2017:2023,
1/D/2040:2043,
1/D/2625:2630,
1/D/2788:2812,
1/D/2888:2897
No text annotation

Problematic loops

#loop idProblemSequence
J3_5IMQ_002No text annotation
J3_5IMQ_005No text annotation
J3_5IMQ_007No text annotation
J3_5IMQ_008No text annotation
J3_5IMQ_010No text annotation
J3_5IMQ_012No text annotation
J3_5IMQ_013No text annotation
J3_5IMQ_015No text annotation
J3_5IMQ_025No text annotation
J3_5IMQ_018No text annotation
J3_5IMQ_019No text annotation
J3_5IMQ_020No text annotation
J3_5IMQ_027No text annotation
J4_5IMQ_002No text annotation
J4_5IMQ_003No text annotation
J4_5IMQ_004No text annotation
J4_5IMQ_006No text annotation
J4_5IMQ_008No text annotation
J4_5IMQ_009No text annotation
J4_5IMQ_011No text annotation
J4_5IMQ_012No text annotation
J4_5IMQ_013No text annotation
J5_5IMQ_003No text annotation
J5_5IMQ_005No text annotation
J5_5IMQ_006No text annotation
J5_5IMQ_007No text annotation
J5_5IMQ_008No text annotation
J7_5IMQ_001No text annotation
J9_5IMQ_001No text annotation
J10_5IMQ_001No text annotation

Coloring options:
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