5IMQ Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5IMQ_001 | 1/4/13:22 | No text annotation Not in a motif group | homologous HL_1QF6_001 NA | |
| HL_5IMQ_002 | 1/4/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_6UFG_007 HL_53597.2 | |
| HL_5IMQ_003 | 1/4/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4LCK_003 HL_22280.1 | |
| HL_5IMQ_004 | 1/5/13:22 | No text annotation Not in a motif group | ||
| HL_5IMQ_005 | 1/5/30:40 | No text annotation Not in a motif group | homologous HL_6GSK_218 HL_36684.1 | |
| HL_5IMQ_006 | 1/5/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5AXM_003 HL_22280.1 | |
| HL_5IMQ_007 | 1/A/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5IMQ_009 | 1/A/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_5IMQ_010 | 1/A/186F:191A | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_10278.1 | |
| HL_5IMQ_011 | 1/A/200:217 | No text annotation Not in a motif group | ||
| HL_5IMQ_012 | 1/A/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_5IMQ_013 | 1/A/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_5IMQ_014 | 1/A/322:332 | No text annotation Not in a motif group | ||
| HL_5IMQ_016 | 1/A/379:384 | No text annotation Not in a motif group | ||
| HL_5IMQ_017 | 1/A/419:424 | No text annotation Not in a motif group | homologous HL_6CZR_082 HL_03562.2 | |
| HL_5IMQ_018 | 1/A/457:475 | No text annotation Not in a motif group | ||
| HL_5IMQ_019 | 1/A/522:527 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_5IMQ_020 | 1/A/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_5IMQ_021 | 1/A/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_5IMQ_022 | 1/A/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_5IMQ_023 | 1/A/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_5IMQ_024 | 1/A/834:852 | No text annotation Not in a motif group | ||
| HL_5IMQ_025 | 1/A/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_5IMQ_026 | 1/A/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_5IMQ_027 | 1/A/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5IMQ_028 | 1/A/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_5IMQ_030 | 1/A/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_5IMQ_031 | 1/A/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5IMQ_032 | 1/A/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_5IMQ_033 | 1/A/1164:1172 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_5IMQ_034 | 1/A/1265:1270 | No text annotation Not in a motif group | homologous HL_6CZR_099 NA | |
| HL_5IMQ_035 | 1/A/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_5IMQ_037 | 1/A/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_5IMQ_038 | 1/A/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_5IMQ_039 | 1/D/57:70 | No text annotation Not in a motif group | ||
| HL_5IMQ_040 | 1/D/87:95 | No text annotation Not in a motif group | homologous HL_4WF9_002 HL_96598.1 | |
| HL_5IMQ_041 | 1/D/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_75407.1 | |
| HL_5IMQ_042 | 1/D/137A:141A | No text annotation Not in a motif group | ||
| HL_5IMQ_043 | 1/D/153:173 | No text annotation Not in a motif group | ||
| HL_5IMQ_044 | 1/D/188:208 | No text annotation Not in a motif group | ||
| HL_5IMQ_045 | 1/D/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_5IMQ_046 | 1/D/245:253 | No text annotation Not in a motif group | ||
| HL_5IMQ_047 | 1/D/270J:270P | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_5IMQ_048 | 1/D/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_5IMQ_049 | 1/D/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_5IMQ_050 | 1/D/327:335 | No text annotation Not in a motif group | homologous HL_4WF9_012 HL_08002.8 | |
| HL_5IMQ_051 | 1/D/381:393 | No text annotation Not in a motif group | ||
| HL_5IMQ_052 | 1/D/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_5IMQ_053 | 1/D/462:467 | No text annotation Not in a motif group | homologous HL_7A0S_015 HL_42097.1 | |
| HL_5IMQ_054 | 1/D/486:494 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_5IMQ_055 | 1/D/544:549 | GNRA Not in a motif group | geometric HL_5VW1_001 HL_42097.1 | |
| HL_5IMQ_056 | 1/D/566:575 | No text annotation Not in a motif group | geometric HL_7A0S_018 HL_89380.2 | |
| HL_5IMQ_057 | 1/D/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_5IMQ_058 | 1/D/640:647 | No text annotation Not in a motif group | homologous HL_7A0S_021 HL_01226.1 | |
| HL_5IMQ_059 | 1/D/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5IMQ_060 | 1/D/744:753 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_5IMQ_061 | 1/D/779:785 | No text annotation Not in a motif group | geometric HL_7A0S_007 HL_02862.2 | |
| HL_5IMQ_062 | 1/D/825:832 | No text annotation Not in a motif group | ||
| HL_5IMQ_063 | 1/D/875:902 | No text annotation Not in a motif group | ||
| HL_5IMQ_064 | 1/D/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_5IMQ_065 | 1/D/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_5IMQ_066 | 1/D/1092:1099 | No text annotation Not in a motif group | geometric HL_3IGI_004 HL_30784.2 | |
| HL_5IMQ_067 | 1/D/1170:1179 | No text annotation Not in a motif group | ||
| HL_5IMQ_068 | 1/D/1221:1228 | No text annotation Not in a motif group | ||
| HL_5IMQ_069 | 1/D/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_5IMQ_070 | 1/D/1324:1330 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_5IMQ_071 | 1/D/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_5IMQ_072 | 1/D/1388:1399 | No text annotation Not in a motif group | ||
| HL_5IMQ_073 | 1/D/1448:1463 | No text annotation Not in a motif group | ||
| HL_5IMQ_074 | 1/D/1491:1499 | No text annotation Not in a motif group | ||
| HL_5IMQ_075 | 1/D/1533:1538 | No text annotation Not in a motif group | geometric HL_7RQB_071 HL_42097.1 | |
| HL_5IMQ_076 | 1/D/1612:1619 | No text annotation Not in a motif group | homologous HL_7A0S_040 HL_64430.2 | |
| HL_5IMQ_077 | 1/D/1630A:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_5IMQ_078 | 1/D/1691:1696 | UNCG Not in a motif group | homologous HL_4WF9_040 HL_03562.2 | |
| HL_5IMQ_079 | 1/D/1725:1734 | No text annotation Not in a motif group | ||
| HL_5IMQ_080 | 1/D/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_5IMQ_081 | 1/D/1776:1788 | No text annotation Not in a motif group | ||
| HL_5IMQ_082 | 1/D/1806:1811 | No text annotation Not in a motif group | ||
| HL_5IMQ_083 | 1/D/1864:1878 | No text annotation Not in a motif group | ||
| HL_5IMQ_084 | 1/D/1909:1921 | No text annotation Not in a motif group | geometric HL_5UD5_001 HL_09136.1 | |
| HL_5IMQ_085 | 1/D/1949:1957 | No text annotation Not in a motif group | homologous HL_7A0S_048 HL_51824.1 | |
| HL_5IMQ_086 | 1/D/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_5IMQ_087 | 1/D/2143:2148 | No text annotation Not in a motif group | geometric HL_7RQB_011 HL_75407.1 | |
| HL_5IMQ_088 | 1/D/2207:2217 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
| HL_5IMQ_089 | 1/D/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_5IMQ_090 | 1/D/2264:2276 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_5IMQ_091 | 1/D/2303:2313 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_5IMQ_092 | 1/D/2324:2331 | No text annotation Not in a motif group | geometric HL_7RQB_056 HL_12078.2 | |
| HL_5IMQ_093 | 1/D/2355:2362 | No text annotation Not in a motif group | ||
| HL_5IMQ_094 | 1/D/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_5IMQ_095 | 1/D/2404:2413 | No text annotation Not in a motif group | homologous HL_4WF9_055 HL_30784.2 | |
| HL_5IMQ_096 | 1/D/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_5IMQ_097 | 1/D/2528:2535 | No text annotation Not in a motif group | homologous HL_7A0S_060 HL_88526.2 | |
| HL_5IMQ_098 | 1/D/2550:2558 | No text annotation Not in a motif group | ||
| HL_5IMQ_099 | 1/D/2594:2599 | No text annotation Not in a motif group | homologous HL_7A0S_062 HL_42097.1 | |
| HL_5IMQ_100 | 1/D/2658:2663 | No text annotation Not in a motif group | geometric HL_3OXE_002 HL_42097.1 | |
| HL_5IMQ_101 | 1/D/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_5IMQ_102 | 1/D/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_5IMQ_103 | 1/D/2819:2827 | No text annotation Not in a motif group | homologous HL_4WF9_064 HL_27930.1 | |
| HL_5IMQ_104 | 1/D/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 | |
| HL_5IMQ_105 | 1/E/38:44 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_87939.1 | |
| HL_5IMQ_106 | 1/E/86:90 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5IMQ_008 | No text annotation | ||
| HL_5IMQ_015 | UNCG | ||
| HL_5IMQ_029 | No text annotation | ||
| HL_5IMQ_036 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5IMQ_001 | 1/A/29:32, 1/A/552:554 | No text annotation Not in a motif group | geometric IL_3MEI_002 IL_95997.1 | |
| IL_5IMQ_002 | 1/A/44:45, 1/A/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_5IMQ_003 | 1/A/54:56, 1/A/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_5IMQ_004 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases Not in a motif group | geometric IL_4LFB_005 IL_76389.1 | |
| IL_5IMQ_005 | 1/A/66:73, 1/A/97:103 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_5IMQ_006 | 1/A/129:131, 1/A/231:232 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_119 IL_16396.2 | |
| IL_5IMQ_007 | 1/A/132:136, 1/A/227:230 | Minor groove platform related Not in a motif group | homologous IL_6CZR_120 IL_58764.3 | |
| IL_5IMQ_008 | 1/A/148:153, 1/A/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_5IMQ_009 | 1/A/185:186B, 1/A/191E:192 | No text annotation Not in a motif group | ||
| IL_5IMQ_010 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_5IMQ_011 | 1/A/248:252, 1/A/274:276 | No text annotation Not in a motif group | ||
| IL_5IMQ_012 | 1/A/292:293, 1/A/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5IMQ_013 | 1/A/320:322, 1/A/332:333 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_5IMQ_014 | 1/A/371:375, 1/A/389:390 | C-loop Not in a motif group | homologous IL_4LFB_015 IL_75255.1 | |
| IL_5IMQ_015 | 1/A/375:376, 1/A/387:389 | Single bulged G Not in a motif group | geometric IL_4LFB_016 IL_00225.2 | |
| IL_5IMQ_016 | 1/A/409:416, 1/A/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5IMQ_017 | 1/A/446:450, 1/A/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_6CZR_130 IL_88269.3 | |
| IL_5IMQ_018 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_6CZR_132 IL_15861.7 | |
| IL_5IMQ_019 | 1/A/515:522, 1/A/527:536 | No text annotation Not in a motif group | ||
| IL_5IMQ_020 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_135 IL_17136.1 | |
| IL_5IMQ_021 | 1/A/594:597, 1/A/643:645 | No text annotation Not in a motif group | homologous IL_6CZR_136 IL_05564.2 | |
| IL_5IMQ_022 | 1/A/597:599, 1/A/639:643 | 8-nt loop receptor Not in a motif group | geometric IL_6CK5_002 IL_93341.1 | |
| IL_5IMQ_023 | 1/A/604:613, 1/A/627:634 | tSH-tHW-tHH-tHS Not in a motif group | homologous IL_6CZR_138 IL_57273.1 | |
| IL_5IMQ_024 | 1/A/657:658, 1/A/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_5IMQ_025 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_5IMQ_026 | 1/A/673:679, 1/A/711:717 | No text annotation Not in a motif group | ||
| IL_5IMQ_027 | 1/A/683:688, 1/A/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_5IMQ_028 | 1/A/774:779, 1/A/803:805 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_5IMQ_029 | 1/A/779:783, 1/A/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_5IMQ_030 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5IMQ_031 | 1/A/922:923, 1/A/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_5IMQ_032 | 1/A/925:927, 1/A/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_5IMQ_033 | 1/A/933:936, 1/A/1379:1384 | No text annotation Not in a motif group | homologous IL_6CZR_149 IL_93211.1 | |
| IL_5IMQ_034 | 1/A/953:954, 1/A/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_5IMQ_035 | 1/A/1048:1051, 1/A/1207:1209 | Self complementary Not in a motif group | geometric IL_5E81_371 IL_95997.1 | |
| IL_5IMQ_036 | 1/A/1051:1056, 1/A/1204:1207 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_5IMQ_037 | 1/A/1056:1058, 1/A/1199:1204 | No text annotation Not in a motif group | ||
| IL_5IMQ_038 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_5IMQ_039 | 1/A/1061:1063, 1/A/1193:1195 | No text annotation Not in a motif group | geometric IL_3RG5_002 IL_95997.1 | |
| IL_5IMQ_040 | 1/A/1124:1127, 1/A/1145:1149 | No text annotation Not in a motif group | ||
| IL_5IMQ_041 | 1/A/1127:1132, 1/A/1142:1145 | No text annotation Not in a motif group | ||
| IL_5IMQ_042 | 1/A/1247:1253, 1/A/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_5IMQ_043 | 1/A/1255:1259, 1/A/1276:1282 | No text annotation Not in a motif group | ||
| IL_5IMQ_044 | 1/A/1259:1262, 1/A/1273:1276 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_5IMQ_045 | 1/A/1303:1311, 1/A/1326:1334 | No text annotation Not in a motif group | ||
| IL_5IMQ_046 | 1/A/1399:1401, 1/A/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_5IMQ_047 | 1/A/1401:1404, 1/A/1497:1501 | No text annotation Not in a motif group | ||
| IL_5IMQ_048 | 1/A/1405:1411, 1/A/1489:1496 | No text annotation Not in a motif group | ||
| IL_5IMQ_049 | 1/A/1412:1414, 1/A/1487:1488 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_5IMQ_050 | 1/A/1414:1416, 1/A/1484:1487 | No text annotation Not in a motif group | ||
| IL_5IMQ_051 | 1/A/1416:1419, 1/A/1481:1484 | Double sheared Not in a motif group | geometric IL_5J7L_062 IL_09705.9 | |
| IL_5IMQ_052 | 1/A/1431:1435, 1/A/1466:1469 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
| IL_5IMQ_053 | 1/A/1435:1437, 1/A/1464:1466 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 | |
| IL_5IMQ_054 | 1/A/1440:1448, 1/A/1455:1461 | No text annotation Not in a motif group | ||
| IL_5IMQ_055 | 1/D/24:30, 1/D/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7RQB_001 IL_66414.6 | |
| IL_5IMQ_056 | 1/D/36:37, 1/D/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_5IMQ_057 | 1/D/43:45, 1/D/433:436 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_5IMQ_058 | 1/D/81:85, 1/D/97:105 | Kink-turn Not in a motif group | homologous IL_7A0S_004 IL_45067.2 | |
| IL_5IMQ_059 | 1/D/183:184, 1/D/212:214 | No text annotation Not in a motif group | ||
| IL_5IMQ_060 | 1/D/238:245, 1/D/253:259 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_009 IL_04346.7 | |
| IL_5IMQ_061 | 1/D/271:272, 1/D/365:366 | Multiple bulged bases Not in a motif group | geometric IL_1R3E_002 IL_59677.2 | |
| IL_5IMQ_062 | 1/D/272:273A, 1/D/363E:365 | No text annotation Not in a motif group | ||
| IL_5IMQ_063 | 1/D/285:286, 1/D/354:356 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_5IMQ_064 | 1/D/286:291, 1/D/349:354 | No text annotation Not in a motif group | ||
| IL_5IMQ_065 | 1/D/292:295, 1/D/343:348 | No text annotation Not in a motif group | ||
| IL_5IMQ_066 | 1/D/481:484, 1/D/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
| IL_5IMQ_067 | 1/D/564:566, 1/D/575:577 | No text annotation Not in a motif group | homologous IL_7A0S_011 IL_95997.1 | |
| IL_5IMQ_068 | 1/D/672:674, 1/D/806:808 | No text annotation Not in a motif group | geometric IL_4LFB_010 IL_95997.1 | |
| IL_5IMQ_069 | 1/D/674:678, 1/D/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_4WF9_021 IL_17470.6 | |
| IL_5IMQ_070 | 1/D/697:698, 1/D/763:765 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.2 | |
| IL_5IMQ_071 | 1/D/703:707, 1/D/724:729 | Triple sheared Not in a motif group | homologous IL_5J7L_263 IL_56467.8 | |
| IL_5IMQ_072 | 1/D/738:741, 1/D/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_5IMQ_073 | 1/D/837:838, 1/D/940:942 | Single stack bend Not in a motif group | homologous IL_7A0S_022 IL_92001.1 | |
| IL_5IMQ_074 | 1/D/844:846, 1/D/932:934 | No text annotation Not in a motif group | ||
| IL_5IMQ_075 | 1/D/846:850, 1/D/928:932 | No text annotation Not in a motif group | ||
| IL_5IMQ_076 | 1/D/857:862, 1/D/915:920 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7A0S_027 IL_81631.1 | |
| IL_5IMQ_077 | 1/D/862:864, 1/D/912:915 | No text annotation Not in a motif group | ||
| IL_5IMQ_078 | 1/D/864:869, 1/D/908:912 | No text annotation Not in a motif group | ||
| IL_5IMQ_079 | 1/D/952:954, 1/D/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_5IMQ_080 | 1/D/994:996, 1/D/1159:1160 | Single bulged C Not in a motif group | homologous IL_7A0S_032 IL_61258.12 | |
| IL_5IMQ_081 | 1/D/998:1002, 1/D/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
| IL_5IMQ_082 | 1/D/1004:1011, 1/D/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.7 | |
| IL_5IMQ_083 | 1/D/1011:1013, 1/D/1149:1150 | Single bulged U Not in a motif group | homologous IL_7RQB_038 IL_83039.13 | |
| IL_5IMQ_084 | 1/D/1019:1031, 1/D/1123:1143 | No text annotation Not in a motif group | ||
| IL_5IMQ_085 | 1/D/1031:1034, 1/D/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_5IMQ_086 | 1/D/1054:1092, 1/D/1099:1105 | No text annotation Not in a motif group | ||
| IL_5IMQ_087 | 1/D/1196:1201, 1/D/1244:1250 | No text annotation Not in a motif group | ||
| IL_5IMQ_088 | 1/D/1202:1207, 1/D/1239:1243 | No text annotation Not in a motif group | ||
| IL_5IMQ_089 | 1/D/1208:1215, 1/D/1234:1238 | Kink-turn Not in a motif group | homologous IL_7A0S_043 IL_70923.2 | |
| IL_5IMQ_090 | 1/D/1218:1221, 1/D/1228:1231 | No text annotation Not in a motif group | ||
| IL_5IMQ_091 | 1/D/1262:1269, 1/D/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_5IMQ_092 | 1/D/1319:1323, 1/D/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_5IMQ_093 | 1/D/1351:1355, 1/D/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_5IMQ_094 | 1/D/1357:1361, 1/D/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_5IMQ_095 | 1/D/1415:1421, 1/D/1576:1587 | No text annotation Not in a motif group | ||
| IL_5IMQ_096 | 1/D/1432:1436, 1/D/1556:1561 | No text annotation Not in a motif group | ||
| IL_5IMQ_097 | 1/D/1437:1440, 1/D/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_5IMQ_098 | 1/D/1489:1491, 1/D/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.2 | |
| IL_5IMQ_099 | 1/D/1525:1533, 1/D/1538:1546 | No text annotation Not in a motif group | ||
| IL_5IMQ_100 | 1/D/1651:1656, 1/D/2004:2006 | No text annotation Not in a motif group | homologous IL_4WF9_062 IL_12566.2 | |
| IL_5IMQ_101 | 1/D/1663:1666, 1/D/1994:1997 | No text annotation Not in a motif group | ||
| IL_5IMQ_102 | 1/D/1686:1691, 1/D/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_5IMQ_103 | 1/D/1717:1725, 1/D/1734:1742 | No text annotation Not in a motif group | geometric IL_6ZDU_001 IL_23164.1 | |
| IL_5IMQ_104 | 1/D/1770:1771, 1/D/1980:1982 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
| IL_5IMQ_105 | 1/D/1798:1804, 1/D/1813:1821 | Kink-turn related Not in a motif group | homologous IL_4WF9_069 IL_17069.3 | |
| IL_5IMQ_106 | 1/D/1837:1840, 1/D/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_5IMQ_107 | 1/D/1841:1842, 1/D/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_5IMQ_108 | 1/D/1846:1849, 1/D/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_5IMQ_109 | 1/D/1850:1855, 1/D/1887:1892 | No text annotation Not in a motif group | ||
| IL_5IMQ_110 | 1/D/1856:1860, 1/D/1882:1886 | Triple sheared Not in a motif group | homologous IL_4WF9_074 IL_96141.1 | |
| IL_5IMQ_111 | 1/D/1933:1945, 1/D/1961:1967 | No text annotation Not in a motif group | ||
| IL_5IMQ_112 | 1/D/2050:2052, 1/D/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_5IMQ_113 | 1/D/2070:2072, 1/D/2437:2441 | No text annotation Not in a motif group | ||
| IL_5IMQ_114 | 1/D/2081:2083, 1/D/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_5IMQ_115 | 1/D/2085:2087, 1/D/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_5IMQ_116 | 1/D/2106:2120, 1/D/2178:2183 | No text annotation Not in a motif group | ||
| IL_5IMQ_117 | 1/D/2121:2128, 1/D/2160:2177 | No text annotation Not in a motif group | ||
| IL_5IMQ_118 | 1/D/2128:2137, 1/D/2154:2160 | No text annotation Not in a motif group | ||
| IL_5IMQ_119 | 1/D/2297:2299, 1/D/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 IL_38958.7 | |
| IL_5IMQ_120 | 1/D/2350:2353, 1/D/2364:2367 | No text annotation Not in a motif group | ||
| IL_5IMQ_121 | 1/D/2401:2403, 1/D/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_5IMQ_122 | 1/D/2453:2454, 1/D/2498:2500 | Single stack bend Not in a motif group | homologous IL_7RQB_091 IL_76488.2 | |
| IL_5IMQ_123 | 1/D/2454:2455, 1/D/2496:2498 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_27635.1 | |
| IL_5IMQ_124 | 1/D/2455:2459, 1/D/2493:2496 | No text annotation Not in a motif group | ||
| IL_5IMQ_125 | 1/D/2459:2462, 1/D/2488:2493 | No text annotation Not in a motif group | ||
| IL_5IMQ_126 | 1/D/2466:2470, 1/D/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_5IMQ_127 | 1/D/2507:2508, 1/D/2580:2582 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_5IMQ_128 | 1/D/2510:2512, 1/D/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7A0S_089 IL_90933.2 | |
| IL_5IMQ_129 | 1/D/2512:2513, 1/D/2571:2574 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 IL_71530.2 | |
| IL_5IMQ_130 | 1/D/2522:2523, 1/D/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_4WF9_097 IL_95601.3 | |
| IL_5IMQ_131 | 1/D/2591:2592, 1/D/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_5IMQ_132 | 1/D/2635:2640, 1/D/2774:2783 | No text annotation Not in a motif group | ||
| IL_5IMQ_133 | 1/D/2648:2658, 1/D/2663:2672 | No text annotation Not in a motif group | ||
| IL_5IMQ_134 | 1/D/2680:2686, 1/D/2723:2727 | No text annotation Not in a motif group | ||
| IL_5IMQ_135 | 1/D/2686:2691, 1/D/2718:2723 | No text annotation Not in a motif group | ||
| IL_5IMQ_136 | 1/D/2695:2698, 1/D/2709:2714 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_002 IL_30621.2 | |
| IL_5IMQ_137 | 1/D/2737:2742, 1/D/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7A0S_098 IL_49767.5 | |
| IL_5IMQ_138 | 1/D/2838:2839, 1/D/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_5IMQ_139 | 1/D/2843:2845, 1/D/2871:2874 | No text annotation Not in a motif group | homologous IL_4WF9_107 IL_02284.5 | |
| IL_5IMQ_140 | 1/D/2847:2852, 1/D/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_5IMQ_141 | 1/E/17:18, 1/E/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_5IMQ_142 | 1/E/23:30, 1/E/54:60 | No text annotation Not in a motif group | ||
| IL_5IMQ_143 | 1/E/30:32, 1/E/50:54 | No text annotation Not in a motif group | ||
| IL_5IMQ_144 | 1/E/34:38, 1/E/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_5IMQ_145 | 1/E/71:79, 1/E/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5IMQ_001 | 1/A/46:52, 1/A/359:369, 1/A/392:395 | No text annotation Not in a motif group | ||
| J3_5IMQ_002 | 1/A/586:588, 1/A/651:656, 1/A/750:755 | No text annotation Not in a motif group | ||
| J3_5IMQ_003 | 1/A/672:673, 1/A/717:725, 1/A/732:734 | No text annotation Not in a motif group | ||
| J3_5IMQ_004 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_5IMQ_005 | 1/A/954:962, 1/A/973:984, 1/A/1221:1226 | No text annotation Not in a motif group | ||
| J3_5IMQ_006 | 1/A/990:998, 1/A/1043:1047, 1/A/1210:1215 | No text annotation Not in a motif group | ||
| J3_5IMQ_008 | 1/A/1063:1068, 1/A/1107:1114, 1/A/1186:1193 | No text annotation Not in a motif group | ||
| J3_5IMQ_009 | 1/A/1073:1074, 1/A/1083:1086, 1/A/1099:1102 | No text annotation Not in a motif group | ||
| J3_5IMQ_010 | 1/A/1116:1119, 1/A/1154:1161, 1/A/1175:1184 | No text annotation Not in a motif group | ||
| J3_5IMQ_011 | 1/D/30:31, 1/D/474:481, 1/D/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_5IMQ_012 | 1/D/55:57, 1/D/70:76, 1/D/110:115 | No text annotation Not in a motif group | ||
| J3_5IMQ_013 | 1/D/683:689, 1/D/773:778, 1/D/786:794 | No text annotation Not in a motif group | ||
| J3_5IMQ_014 | 1/D/698:700, 1/D/732:736, 1/D/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_5IMQ_015 | 1/D/1298:1303, 1/D/1625:1628, 1/D/1638:1642 | No text annotation Not in a motif group | ||
| J3_5IMQ_016 | 1/D/1344:1350, 1/D/1381:1386, 1/D/1401:1403 | No text annotation Not in a motif group | ||
| J3_5IMQ_017 | 1/D/2091:2093, 1/D/2196:2205, 1/D/2219:2228 | No text annotation Not in a motif group | ||
| J3_5IMQ_018 | 1/D/2295:2297, 1/D/2321:2324, 1/D/2331:2337 | No text annotation Not in a motif group | ||
| J3_5IMQ_019 | 1/D/2517:2520, 1/D/2545:2548, 1/D/2560:2567 | No text annotation Not in a motif group | ||
| J3_5IMQ_020 | 1/D/2814:2815, 1/D/2831:2837, 1/D/2881:2886 | No text annotation Not in a motif group | ||
| J3_5IMQ_021 | 1/E/11:16, 1/E/68:69, 1/E/107:109 | No text annotation Not in a motif group | homologous J3_7RQB_015 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5IMQ_007 | No text annotation |
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