3JBV Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3JBV_001 | 1/A/12:22 | No text annotation Not in a motif group | ||
| HL_3JBV_003 | 1/A/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_3JBV_004 | 1/A/184:193 | No text annotation Not in a motif group | ||
| HL_3JBV_006 | 1/A/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_3JBV_007 | 1/A/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_3JBV_008 | 1/A/322:332 | No text annotation Not in a motif group | ||
| HL_3JBV_009 | 1/A/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_3JBV_010 | 1/A/379:384 | GNRA Not in a motif group | homologous HL_6CZR_081 HL_42097.1 | |
| HL_3JBV_011 | 1/A/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_3JBV_013 | 1/A/522:527 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_3JBV_014 | 1/A/616:624 | No text annotation Not in a motif group | ||
| HL_3JBV_016 | 1/A/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_3JBV_019 | 1/A/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_3JBV_020 | 1/A/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_3JBV_021 | 1/A/963:972 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_3JBV_022 | 1/A/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_3JBV_023 | 1/A/1028:1033 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_3JBV_024 | 1/A/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_3JBV_025 | 1/A/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
| HL_3JBV_026 | 1/A/1133:1141 | No text annotation Not in a motif group | ||
| HL_3JBV_028 | 1/A/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_3JBV_029 | 1/A/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
| HL_3JBV_030 | 1/A/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_3JBV_033 | 1/V/13:22 | No text annotation Not in a motif group | homologous HL_6ORD_035 HL_14843.1 | |
| HL_3JBV_034 | 1/V/29:41 | No text annotation Not in a motif group | homologous HL_6GSL_221 HL_06285.2 | |
| HL_3JBV_035 | 1/V/53:61 | No text annotation Not in a motif group | homologous HL_6GSL_222 NA | |
| HL_3JBV_036 | 1/W/12:23 | No text annotation Not in a motif group | homologous HL_3TUP_001 HL_25462.2 | |
| HL_3JBV_037 | 1/W/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_6UFM_002 HL_53597.2 | |
| HL_3JBV_038 | 1/a/38:44 | No text annotation Not in a motif group | geometric HL_1MJI_002 HL_87939.1 | |
| HL_3JBV_039 | 1/a/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_3JBV_040 | 1/b/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_3JBV_041 | 1/b/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_84193.1 | |
| HL_3JBV_042 | 1/b/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_3JBV_043 | 1/b/137:142 | No text annotation Not in a motif group | ||
| HL_3JBV_044 | 1/b/157:169 | No text annotation Not in a motif group | ||
| HL_3JBV_045 | 1/b/194:201 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.2 | |
| HL_3JBV_046 | 1/b/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_3JBV_047 | 1/b/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_3JBV_048 | 1/b/305:312 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_3JBV_049 | 1/b/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_3JBV_050 | 1/b/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_3JBV_051 | 1/b/382:392 | No text annotation Not in a motif group | homologous HL_5J7L_145 HL_91503.4 | |
| HL_3JBV_052 | 1/b/410:417 | No text annotation Not in a motif group | ||
| HL_3JBV_053 | 1/b/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_3JBV_054 | 1/b/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_3JBV_055 | 1/b/543:550 | No text annotation Not in a motif group | ||
| HL_3JBV_056 | 1/b/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_150 HL_89380.2 | |
| HL_3JBV_057 | 1/b/611:617 | No text annotation Not in a motif group | ||
| HL_3JBV_058 | 1/b/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_3JBV_059 | 1/b/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_3JBV_060 | 1/b/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_3JBV_061 | 1/b/744:753 | No text annotation Not in a motif group | homologous HL_7A0S_022 HL_39334.6 | |
| HL_3JBV_062 | 1/b/779:785 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
| HL_3JBV_063 | 1/b/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_3JBV_064 | 1/b/883:893 | No text annotation Not in a motif group | ||
| HL_3JBV_065 | 1/b/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_3JBV_066 | 1/b/978:985 | No text annotation Not in a motif group | homologous HL_7A0S_027 HL_64430.2 | |
| HL_3JBV_067 | 1/b/1064:1074 | No text annotation Not in a motif group | ||
| HL_3JBV_068 | 1/b/1092:1099 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_75407.1 | |
| HL_3JBV_069 | 1/b/1168:1181 | No text annotation Not in a motif group | ||
| HL_3JBV_070 | 1/b/1222:1227 | No text annotation Not in a motif group | homologous HL_7A0S_031 HL_87030.2 | |
| HL_3JBV_071 | 1/b/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_3JBV_072 | 1/b/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_46680.1 | |
| HL_3JBV_073 | 1/b/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_3JBV_074 | 1/b/1388:1399 | No text annotation Not in a motif group | ||
| HL_3JBV_075 | 1/b/1450:1461 | No text annotation Not in a motif group | ||
| HL_3JBV_076 | 1/b/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_3JBV_077 | 1/b/1531:1540 | No text annotation Not in a motif group | ||
| HL_3JBV_078 | 1/b/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_3JBV_079 | 1/b/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_3JBV_080 | 1/b/1629:1637 | No text annotation Not in a motif group | ||
| HL_3JBV_081 | 1/b/1691:1696 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_03562.2 | |
| HL_3JBV_082 | 1/b/1727:1733 | No text annotation Not in a motif group | ||
| HL_3JBV_083 | 1/b/1752:1756 | No text annotation Not in a motif group | homologous HL_7A0S_044 HL_76539.2 | |
| HL_3JBV_084 | 1/b/1777:1787 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.5 | |
| HL_3JBV_085 | 1/b/1804:1813 | No text annotation Not in a motif group | ||
| HL_3JBV_086 | 1/b/1868:1873 | GNRA Not in a motif group | geometric HL_5J7L_007 HL_42097.1 | |
| HL_3JBV_087 | 1/b/1910:1920 | No text annotation Not in a motif group | ||
| HL_3JBV_088 | 1/b/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_3JBV_089 | 1/b/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_3JBV_090 | 1/b/2127:2161 | No text annotation Not in a motif group | ||
| HL_3JBV_091 | 1/b/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_3JBV_092 | 1/b/2248:2256 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_3JBV_093 | 1/b/2264:2276 | No text annotation Not in a motif group | homologous HL_5J7L_187 HL_19870.6 | |
| HL_3JBV_094 | 1/b/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_3JBV_095 | 1/b/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_3JBV_096 | 1/b/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_3JBV_097 | 1/b/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_30784.2 | |
| HL_3JBV_098 | 1/b/2471:2479 | No text annotation Not in a motif group | homologous HL_7A0S_059 HL_06192.2 | |
| HL_3JBV_099 | 1/b/2525:2538 | No text annotation Not in a motif group | ||
| HL_3JBV_100 | 1/b/2551:2557 | No text annotation Not in a motif group | ||
| HL_3JBV_101 | 1/b/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_3JBV_102 | 1/b/2658:2663 | GNRA Not in a motif group | geometric HL_4R4V_004 HL_42097.1 | |
| HL_3JBV_103 | 1/b/2698:2709 | No text annotation Not in a motif group | ||
| HL_3JBV_104 | 1/b/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_3JBV_105 | 1/b/2796:2799 | No text annotation Not in a motif group | ||
| HL_3JBV_106 | 1/b/2818:2828 | No text annotation Not in a motif group | ||
| HL_3JBV_107 | 1/b/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3JBV_002 | No text annotation | ||
| HL_3JBV_005 | UNCG | ||
| HL_3JBV_012 | No text annotation | ||
| HL_3JBV_015 | No text annotation | ||
| HL_3JBV_017 | No text annotation | ||
| HL_3JBV_018 | No text annotation | ||
| HL_3JBV_027 | No text annotation | ||
| HL_3JBV_031 | UNCG | ||
| HL_3JBV_032 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3JBV_001 | 1/A/30:32, 1/A/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_3JBV_002 | 1/A/43:45, 1/A/396:399 | No text annotation Not in a motif group | geometric IL_4E48_001 IL_95997.1 | |
| IL_3JBV_003 | 1/A/47:52, 1/A/359:361 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_11178.1 | |
| IL_3JBV_004 | 1/A/54:56, 1/A/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_3JBV_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
| IL_3JBV_006 | 1/A/67:69, 1/A/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_3JBV_008 | 1/A/75:81, 1/A/89:95 | No text annotation Not in a motif group | ||
| IL_3JBV_009 | 1/A/128:132, 1/A/230:233 | No text annotation Not in a motif group | ||
| IL_3JBV_010 | 1/A/132:136, 1/A/227:230 | No text annotation Not in a motif group | ||
| IL_3JBV_011 | 1/A/144:147, 1/A/175:178 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4EYA_008 IL_30621.2 | |
| IL_3JBV_012 | 1/A/147:154, 1/A/167:175 | No text annotation Not in a motif group | ||
| IL_3JBV_013 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_3JBV_014 | 1/A/249:253, 1/A/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
| IL_3JBV_015 | 1/A/292:293, 1/A/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_3JBV_016 | 1/A/320:322, 1/A/332:333 | No text annotation Not in a motif group | ||
| IL_3JBV_017 | 1/A/408:416, 1/A/427:434 | No text annotation Not in a motif group | ||
| IL_3JBV_019 | 1/A/446:450, 1/A/483:488 | No text annotation Not in a motif group | ||
| IL_3JBV_020 | 1/A/450:454, 1/A/479:483 | No text annotation Not in a motif group | ||
| IL_3JBV_021 | 1/A/454:462, 1/A/470:479 | No text annotation Not in a motif group | ||
| IL_3JBV_022 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_3JBV_023 | 1/A/515:521, 1/A/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_3JBV_024 | 1/A/569:575, 1/A/880:881 | No text annotation Not in a motif group | homologous IL_6CZR_134 IL_69996.1 | |
| IL_3JBV_025 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_3JBV_026 | 1/A/594:596, 1/A/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_3JBV_027 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_3JBV_028 | 1/A/604:612, 1/A/628:634 | No text annotation Not in a motif group | ||
| IL_3JBV_029 | 1/A/654:655, 1/A/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_3JBV_030 | 1/A/659:660, 1/A/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_3JBV_031 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_3JBV_032 | 1/A/673:678, 1/A/712:717 | No text annotation Not in a motif group | geometric IL_5J7L_034 IL_04668.1 | |
| IL_3JBV_034 | 1/A/774:778, 1/A/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_3JBV_036 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_3JBV_037 | 1/A/922:923, 1/A/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_3JBV_038 | 1/A/924:927, 1/A/1390:1392 | No text annotation Not in a motif group | geometric IL_4WF9_018 IL_51629.2 | |
| IL_3JBV_039 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_3JBV_040 | 1/A/953:954, 1/A/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_3JBV_041 | 1/A/993:997, 1/A/1044:1045 | Minor groove platform Not in a motif group | geometric IL_5J7L_043 IL_47078.1 | |
| IL_3JBV_042 | 1/A/997:999, 1/A/1041:1044 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_84698.1 | |
| IL_3JBV_043 | 1/A/1001:1002, 1/A/1037:1039 | Single stack bend Not in a motif group | homologous IL_4LFB_041 IL_76488.2 | |
| IL_3JBV_044 | 1/A/1048:1050, 1/A/1208:1209 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_3JBV_045 | 1/A/1052:1056, 1/A/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_3JBV_046 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_3JBV_047 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_3JBV_048 | 1/A/1061:1063, 1/A/1193:1195 | No text annotation Not in a motif group | geometric IL_5J7L_050 IL_95997.1 | |
| IL_3JBV_049 | 1/A/1124:1128, 1/A/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_3JBV_050 | 1/A/1129:1132, 1/A/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_3JBV_051 | 1/A/1158:1161, 1/A/1175:1181 | No text annotation Not in a motif group | ||
| IL_3JBV_052 | 1/A/1255:1258, 1/A/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_3JBV_053 | 1/A/1259:1263, 1/A/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_3JBV_063 | 1/a/17:19, 1/a/64:67 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_1U6B_001 IL_82068.2 | |
| IL_3JBV_064 | 1/a/23:28, 1/a/56:60 | No text annotation Not in a motif group | homologous IL_7A0S_103 IL_18472.2 | |
| IL_3JBV_065 | 1/a/30:31, 1/a/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.6 | |
| IL_3JBV_066 | 1/a/32:38, 1/a/44:50 | No text annotation Not in a motif group | ||
| IL_3JBV_067 | 1/a/71:79, 1/a/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 | |
| IL_3JBV_068 | 1/b/24:30, 1/b/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5J7L_245 IL_66414.6 | |
| IL_3JBV_069 | 1/b/36:37, 1/b/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_3JBV_070 | 1/b/43:44, 1/b/434:436 | No text annotation Not in a motif group | ||
| IL_3JBV_071 | 1/b/81:85, 1/b/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_93699.1 | |
| IL_3JBV_072 | 1/b/183:184, 1/b/212:214 | Single stack bend Not in a motif group | homologous IL_5J7L_249 IL_76488.2 | |
| IL_3JBV_073 | 1/b/188:194, 1/b/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_250 IL_04346.7 | |
| IL_3JBV_074 | 1/b/239:245, 1/b/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_3JBV_075 | 1/b/269:271, 1/b/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_3JBV_076 | 1/b/274:281, 1/b/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_3JBV_077 | 1/b/293:295, 1/b/343:347 | No text annotation Not in a motif group | ||
| IL_3JBV_078 | 1/b/481:484, 1/b/496:509 | No text annotation Not in a motif group | homologous IL_4WF9_015 IL_60992.6 | |
| IL_3JBV_079 | 1/b/536:539, 1/b/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.9 | |
| IL_3JBV_080 | 1/b/564:566, 1/b/575:577 | No text annotation Not in a motif group | geometric IL_7A0S_011 IL_95997.1 | |
| IL_3JBV_081 | 1/b/606:610, 1/b/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_3JBV_082 | 1/b/672:678, 1/b/799:808 | No text annotation Not in a motif group | ||
| IL_3JBV_083 | 1/b/697:698, 1/b/763:765 | No text annotation Not in a motif group | ||
| IL_3JBV_084 | 1/b/702:703, 1/b/728:730 | Single bulged G Not in a motif group | homologous IL_7RQB_020 IL_00225.2 | |
| IL_3JBV_085 | 1/b/703:707, 1/b/724:728 | Triple sheared Not in a motif group | geometric IL_5J7L_263 IL_56467.8 | |
| IL_3JBV_086 | 1/b/738:740, 1/b/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_3JBV_087 | 1/b/775:777, 1/b/787:791 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
| IL_3JBV_088 | 1/b/842:845, 1/b/932:936 | No text annotation Not in a motif group | ||
| IL_3JBV_089 | 1/b/845:851, 1/b/926:932 | No text annotation Not in a motif group | ||
| IL_3JBV_090 | 1/b/856:862, 1/b/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.3 | |
| IL_3JBV_091 | 1/b/862:863, 1/b/913:915 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_00225.2 | |
| IL_3JBV_092 | 1/b/864:868, 1/b/909:912 | C-loop Not in a motif group | homologous IL_7A0S_029 IL_02509.1 | |
| IL_3JBV_093 | 1/b/870:872, 1/b/905:907 | No text annotation Not in a motif group | ||
| IL_3JBV_094 | 1/b/875:881, 1/b/895:902 | No text annotation Not in a motif group | ||
| IL_3JBV_095 | 1/b/994:996, 1/b/1159:1160 | No text annotation Not in a motif group | ||
| IL_3JBV_096 | 1/b/998:1002, 1/b/1153:1157 | No text annotation Not in a motif group | ||
| IL_3JBV_097 | 1/b/1004:1011, 1/b/1150:1151 | No text annotation Not in a motif group | ||
| IL_3JBV_098 | 1/b/1011:1013, 1/b/1149:1150 | No text annotation Not in a motif group | ||
| IL_3JBV_099 | 1/b/1017:1024, 1/b/1140:1145 | No text annotation Not in a motif group | ||
| IL_3JBV_100 | 1/b/1024:1030, 1/b/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_50715.1 | |
| IL_3JBV_101 | 1/b/1031:1034, 1/b/1121:1123 | No text annotation Not in a motif group | ||
| IL_3JBV_102 | 1/b/1038:1041, 1/b/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_3JBV_103 | 1/b/1043:1053, 1/b/1106:1112 | No text annotation Not in a motif group | ||
| IL_3JBV_104 | 1/b/1196:1198, 1/b/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_3JBV_105 | 1/b/1201:1207, 1/b/1239:1244 | No text annotation Not in a motif group | ||
| IL_3JBV_106 | 1/b/1208:1215, 1/b/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_3JBV_107 | 1/b/1262:1269, 1/b/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_3JBV_108 | 1/b/1310:1313, 1/b/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_3JBV_109 | 1/b/1319:1323, 1/b/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_3JBV_110 | 1/b/1351:1355, 1/b/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_3JBV_111 | 1/b/1355:1361, 1/b/1370:1376 | No text annotation Not in a motif group | ||
| IL_3JBV_112 | 1/b/1413:1416, 1/b/1582:1589 | No text annotation Not in a motif group | ||
| IL_3JBV_113 | 1/b/1417:1421, 1/b/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_3JBV_114 | 1/b/1432:1435, 1/b/1557:1561 | No text annotation Not in a motif group | ||
| IL_3JBV_115 | 1/b/1437:1440, 1/b/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_04059.1 | |
| IL_3JBV_116 | 1/b/1468:1471, 1/b/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_3JBV_117 | 1/b/1472:1479, 1/b/1512:1519 | No text annotation Not in a motif group | ||
| IL_3JBV_118 | 1/b/1480:1482, 1/b/1507:1511 | No text annotation Not in a motif group | ||
| IL_3JBV_119 | 1/b/1484:1491, 1/b/1499:1505 | No text annotation Not in a motif group | ||
| IL_3JBV_120 | 1/b/1526:1529, 1/b/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_3JBV_121 | 1/b/1651:1656, 1/b/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_3JBV_122 | 1/b/1660:1665, 1/b/1995:2000 | No text annotation Not in a motif group | ||
| IL_3JBV_123 | 1/b/1666:1669, 1/b/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7A0S_061 IL_50694.2 | |
| IL_3JBV_124 | 1/b/1669:1674, 1/b/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7A0S_062 IL_82842.2 | |
| IL_3JBV_125 | 1/b/1686:1691, 1/b/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_3JBV_126 | 1/b/1712:1718, 1/b/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_3JBV_127 | 1/b/1720:1724, 1/b/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.8 | |
| IL_3JBV_128 | 1/b/1769:1771, 1/b/1980:1983 | No text annotation Not in a motif group | ||
| IL_3JBV_129 | 1/b/1798:1804, 1/b/1813:1821 | Kink-turn related Not in a motif group | geometric IL_5J7L_313 IL_17069.3 | |
| IL_3JBV_130 | 1/b/1837:1841, 1/b/1901:1903 | No text annotation Not in a motif group | ||
| IL_3JBV_131 | 1/b/1841:1842, 1/b/1898:1901 | No text annotation Not in a motif group | ||
| IL_3JBV_132 | 1/b/1864:1867, 1/b/1874:1878 | No text annotation Not in a motif group | ||
| IL_3JBV_133 | 1/b/1933:1934, 1/b/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_59677.2 | |
| IL_3JBV_134 | 1/b/1934:1946, 1/b/1960:1964 | No text annotation Not in a motif group | ||
| IL_3JBV_135 | 1/b/2050:2052, 1/b/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_3JBV_136 | 1/b/2054:2056, 1/b/2612:2615 | No text annotation Not in a motif group | ||
| IL_3JBV_137 | 1/b/2067:2069, 1/b/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_3JBV_138 | 1/b/2070:2071, 1/b/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_3JBV_139 | 1/b/2081:2083, 1/b/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_3JBV_140 | 1/b/2085:2087, 1/b/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_95997.1 | |
| IL_3JBV_141 | 1/b/2102:2108, 1/b/2181:2187 | No text annotation Not in a motif group | ||
| IL_3JBV_142 | 1/b/2108:2110, 1/b/2179:2181 | No text annotation Not in a motif group | ||
| IL_3JBV_143 | 1/b/2202:2204, 1/b/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_3JBV_144 | 1/b/2297:2299, 1/b/2317:2321 | No text annotation Not in a motif group | ||
| IL_3JBV_145 | 1/b/2326:2328, 1/b/2387:2389 | No text annotation Not in a motif group | ||
| IL_3JBV_146 | 1/b/2350:2353, 1/b/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_3JBV_147 | 1/b/2401:2403, 1/b/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_3JBV_148 | 1/b/2454:2455, 1/b/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_3JBV_149 | 1/b/2457:2459, 1/b/2493:2494 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.1 | |
| IL_3JBV_150 | 1/b/2459:2461, 1/b/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_337 IL_92788.2 | |
| IL_3JBV_151 | 1/b/2466:2470, 1/b/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_3JBV_152 | 1/b/2507:2508, 1/b/2580:2582 | Major groove platform Not in a motif group | homologous IL_7A0S_088 IL_76223.2 | |
| IL_3JBV_153 | 1/b/2510:2512, 1/b/2574:2578 | No text annotation Not in a motif group | ||
| IL_3JBV_154 | 1/b/2512:2513, 1/b/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_3JBV_155 | 1/b/2520:2523, 1/b/2540:2545 | No text annotation Not in a motif group | ||
| IL_3JBV_156 | 1/b/2588:2592, 1/b/2601:2606 | No text annotation Not in a motif group | geometric IL_5BTM_001 IL_05145.2 | |
| IL_3JBV_157 | 1/b/2636:2640, 1/b/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_04638.1 | |
| IL_3JBV_158 | 1/b/2652:2658, 1/b/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7A0S_094 IL_16458.1 | |
| IL_3JBV_159 | 1/b/2680:2684, 1/b/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_3JBV_160 | 1/b/2687:2691, 1/b/2718:2722 | No text annotation Not in a motif group | ||
| IL_3JBV_161 | 1/b/2695:2696, 1/b/2711:2714 | No text annotation Not in a motif group | ||
| IL_3JBV_162 | 1/b/2737:2742, 1/b/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_3JBV_163 | 1/b/2795:2796, 1/b/2799:2801 | Single stack bend Not in a motif group | geometric IL_6FZ0_001 IL_92001.1 | |
| IL_3JBV_164 | 1/b/2806:2811, 1/b/2889:2892 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_49460.2 | |
| IL_3JBV_165 | 1/b/2838:2840, 1/b/2877:2880 | No text annotation Not in a motif group | ||
| IL_3JBV_166 | 1/b/2843:2846, 1/b/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.3 | |
| IL_3JBV_167 | 1/b/2847:2852, 1/b/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3JBV_007 | No text annotation | ||
| IL_3JBV_018 | No text annotation | ||
| IL_3JBV_033 | Kink-turn | ||
| IL_3JBV_035 | tSH-tHW-tHS | ||
| IL_3JBV_054 | No text annotation | ||
| IL_3JBV_055 | No text annotation | ||
| IL_3JBV_056 | No text annotation | ||
| IL_3JBV_057 | Decoding loop related | ||
| IL_3JBV_058 | No text annotation | ||
| IL_3JBV_059 | Double sheared | ||
| IL_3JBV_060 | No text annotation | ||
| IL_3JBV_061 | Major groove platform with extra cWW | ||
| IL_3JBV_062 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3JBV_001 | 1/A/45:47, 1/A/361:367, 1/A/393:396 | No text annotation Not in a motif group | ||
| J3_3JBV_002 | 1/A/586:590, 1/A/649:654, 1/A/754:755 | No text annotation Not in a motif group | ||
| J3_3JBV_003 | 1/A/672:673, 1/A/717:725, 1/A/732:734 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
| J3_3JBV_004 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_3JBV_005 | 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_3JBV_006 | 1/A/955:963, 1/A/972:984, 1/A/1221:1225 | No text annotation Not in a motif group | ||
| J3_3JBV_007 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_3JBV_008 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation Not in a motif group | ||
| J3_3JBV_009 | 1/A/1073:1074, 1/A/1083:1087, 1/A/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_3JBV_010 | 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | No text annotation Not in a motif group | ||
| J3_3JBV_011 | 1/a/10:16, 1/a/68:70, 1/a/106:110 | No text annotation Not in a motif group | ||
| J3_3JBV_012 | 1/b/30:31, 1/b/474:481, 1/b/509:510 | No text annotation Not in a motif group | ||
| J3_3JBV_013 | 1/b/56:57, 1/b/70:77, 1/b/109:114 | No text annotation Not in a motif group | ||
| J3_3JBV_014 | 1/b/683:689, 1/b/773:775, 1/b/791:794 | No text annotation Not in a motif group | ||
| J3_3JBV_015 | 1/b/698:700, 1/b/732:736, 1/b/760:763 | No text annotation Not in a motif group | ||
| J3_3JBV_016 | 1/b/1298:1304, 1/b/1624:1627, 1/b/1639:1642 | No text annotation Not in a motif group | ||
| J3_3JBV_017 | 1/b/1306:1309, 1/b/1605:1611, 1/b/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_3JBV_018 | 1/b/2089:2093, 1/b/2196:2200, 1/b/2223:2230 | No text annotation Not in a motif group | ||
| J3_3JBV_019 | 1/b/2517:2520, 1/b/2545:2547, 1/b/2561:2567 | No text annotation Not in a motif group | ||
| J3_3JBV_020 | 1/b/2789:2791, 1/b/2805:2806, 1/b/2892:2894 | No text annotation Not in a motif group | ||
| J3_3JBV_021 | 1/b/2812:2815, 1/b/2831:2836, 1/b/2882:2888 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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