6BOK Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6BOK_001 | 1/A/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_6BOK_002 | 1/A/81:88 | No text annotation | ||
| HL_6BOK_003 | 1/A/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_6BOK_004 | 1/A/186G:191A | No text annotation | homologous HL_4LFB_004 HL_48417.5 | |
| HL_6BOK_235 | 1/A/201:216 | No text annotation | ||
| HL_6BOK_006 | 1/A/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_6BOK_007 | 1/A/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_6BOK_008 | 1/A/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_6BOK_009 | 1/A/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_6BOK_010 | 1/A/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_6BOK_011 | 1/A/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_6BOK_012 | 1/A/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_6BOK_217 | 1/A/522:527 | GNRA variation | homologous HL_5J7L_205 HL_37824.7 | |
| HL_6BOK_014 | 1/A/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_6BOK_015 | 1/A/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_6BOK_016 | 1/A/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_6BOK_017 | 1/A/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_6BOK_018 | 1/A/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_6BOK_019 | 1/A/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_6BOK_020 | 1/A/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_6BOK_021 | 1/A/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_6BOK_022 | 1/A/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_6BOK_023 | 1/A/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_6BOK_024 | 1/A/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_6BOK_025 | 1/A/1133:1141 | No text annotation | ||
| HL_6BOK_026 | 1/A/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_6BOK_027 | 1/A/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_6BOK_028 | 1/A/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_6BOK_029 | 1/A/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_6BOK_030 | 1/A/1449:1454 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6BOK_031 | 1/A/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.7 | |
| HL_6BOK_032 | 1/B/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_6BOK_033 | 1/B/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_6BOK_034 | 1/B/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_6BOK_035 | 1/B/137B:141B | No text annotation | homologous HL_7RQB_004 NA | |
| HL_6BOK_036 | 1/B/154:172 | No text annotation | ||
| HL_6BOK_037 | 1/B/194:201 | No text annotation | geometric HL_5J7L_139 HL_30068.2 | |
| HL_6BOK_038 | 1/B/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_6BOK_039 | 1/B/246:252 | No text annotation | homologous HL_7A0S_008 HL_37369.2 | |
| HL_6BOK_040 | 1/B/270K:270Q | No text annotation | homologous HL_8VTW_008 NA | |
| HL_6BOK_041 | 1/B/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_6BOK_042 | 1/B/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_6BOK_043 | 1/B/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_6BOK_219 | 1/B/383:391 | No text annotation | ||
| HL_6BOK_045 | 1/B/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_6BOK_046 | 1/B/462:467 | GNRA | homologous HL_5J7L_147 HL_37824.7 | |
| HL_6BOK_047 | 1/B/487:493 | GNRA | homologous HL_4WF9_016 HL_37824.7 | |
| HL_6BOK_048 | 1/B/544:549 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_6BOK_049 | 1/B/566:575 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_6BOK_050 | 1/B/611:617 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_6BOK_051 | 1/B/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_6BOK_052 | 1/B/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_6BOK_053 | 1/B/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_6BOK_054 | 1/B/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_6BOK_055 | 1/B/779:785 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
| HL_6BOK_056 | 1/B/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_6BOK_057 | 1/B/882:894 | No text annotation | ||
| HL_6BOK_058 | 1/B/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_6BOK_059 | 1/B/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6BOK_236 | 1/B/1092:1099 | No text annotation | ||
| HL_6BOK_061 | 1/B/1170:1179 | No text annotation | geometric HL_4LFB_004 HL_48417.5 | |
| HL_6BOK_062 | 1/B/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_6BOK_063 | 1/B/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_6BOK_064 | 1/B/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_6BOK_065 | 1/B/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6BOK_066 | 1/B/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6BOK_067 | 1/B/1451:1459 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_6BOK_068 | 1/B/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_6BOK_221 | 1/B/1532:1539 | No text annotation | geometric HL_7KI3_001 HL_75660.5 | |
| HL_6BOK_070 | 1/B/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_6BOK_071 | 1/B/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6BOK_072 | 1/B/1630B:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_6BOK_073 | 1/B/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_6BOK_074 | 1/B/1727:1733 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_6BOK_075 | 1/B/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6BOK_076 | 1/B/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_6BOK_077 | 1/B/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6BOK_078 | 1/B/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_6BOK_222 | 1/B/1910:1920 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
| HL_6BOK_080 | 1/B/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_6BOK_081 | 1/B/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_6BOK_082 | 1/B/2123:2175 | No text annotation | ||
| HL_6BOK_083 | 1/B/2209:2215 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_6BOK_084 | 1/B/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_6BOK_085 | 1/B/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_6BOK_237 | 1/B/2304:2312 | No text annotation | homologous HL_9DFE_198 HL_50860.2 | |
| HL_6BOK_087 | 1/B/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_6BOK_088 | 1/B/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_6BOK_089 | 1/B/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_6BOK_090 | 1/B/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_6BOK_091 | 1/B/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_6BOK_092 | 1/B/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_6BOK_093 | 1/B/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
| HL_6BOK_094 | 1/B/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6BOK_095 | 1/B/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.7 | |
| HL_6BOK_096 | 1/B/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_6BOK_097 | 1/B/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_6BOK_098 | 1/B/2793:2803 | No text annotation | ||
| HL_6BOK_099 | 1/B/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_6BOK_100 | 1/B/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_6BOK_225 | 1/C/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_6BOK_101 | 1/C/38:44 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_6BOK_102 | 1/C/86:90 | GNRA | homologous HL_7A0S_070 HL_37824.7 | |
| HL_6BOK_103 | 1/D/12:23 | No text annotation | homologous HL_5IB8_207 NA | |
| HL_6BOK_104 | 1/D/31:39 | tRNA anticodon loop | homologous HL_1H3E_002 HL_77082.1 | |
| HL_6BOK_105 | 1/D/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5E81_207 HL_28252.6 | |
| HL_6BOK_106 | 1/DB/12:22 | No text annotation | geometric HL_4LFB_001 HL_89881.5 | |
| HL_6BOK_107 | 1/DB/81:88 | No text annotation | ||
| HL_6BOK_108 | 1/DB/158:163 | GNRA | geometric HL_4LFB_003 HL_37824.7 | |
| HL_6BOK_109 | 1/DB/186G:191A | No text annotation | geometric HL_4LFB_004 HL_48417.5 | |
| HL_6BOK_238 | 1/DB/201:216 | No text annotation | ||
| HL_6BOK_111 | 1/DB/259:267 | GNRA related | geometric HL_4LFB_006 HL_84299.4 | |
| HL_6BOK_112 | 1/DB/296:301 | GNRA | geometric HL_4LFB_007 HL_37824.7 | |
| HL_6BOK_113 | 1/DB/320:333 | No text annotation | geometric HL_4LFB_008 HL_81205.3 | |
| HL_6BOK_114 | 1/DB/342:347 | UNCG | geometric HL_4LFB_009 HL_34617.5 | |
| HL_6BOK_115 | 1/DB/379:384 | GNRA | geometric HL_4LFB_010 HL_37824.7 | |
| HL_6BOK_116 | 1/DB/419:424 | UNCG | geometric HL_5Y85_004 HL_34617.5 | |
| HL_6BOK_117 | 1/DB/458:474 | GNRA | geometric HL_4LFB_012 HL_37824.7 | |
| HL_6BOK_226 | 1/DB/522:527 | GNRA variation | homologous HL_5J7L_205 HL_37824.7 | |
| HL_6BOK_119 | 1/DB/617:623 | No text annotation | geometric HL_4LFB_014 HL_10453.3 | |
| HL_6BOK_120 | 1/DB/689:698 | No text annotation | geometric HL_4LFB_015 HL_75293.5 | |
| HL_6BOK_121 | 1/DB/726:731 | GNRA | geometric HL_4LFB_016 HL_37824.7 | |
| HL_6BOK_122 | 1/DB/786:796 | No text annotation | geometric HL_4LFB_017 HL_75293.5 | |
| HL_6BOK_123 | 1/DB/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_6BOK_124 | 1/DB/862:867 | GNRA | geometric HL_4LFB_019 HL_37824.7 | |
| HL_6BOK_125 | 1/DB/897:902 | GNRA | geometric HL_4V9F_048 HL_37824.7 | |
| HL_6BOK_126 | 1/DB/963:972 | No text annotation | geometric HL_4V88_212 NA | |
| HL_6BOK_127 | 1/DB/1012:1017 | GNRA | geometric HL_4LFB_022 HL_37824.7 | |
| HL_6BOK_128 | 1/DB/1076:1081 | GNRA | geometric HL_4V9F_065 HL_37824.7 | |
| HL_6BOK_129 | 1/DB/1089:1096 | T-loop related | geometric HL_4LFB_025 HL_77436.5 | |
| HL_6BOK_130 | 1/DB/1133:1141 | No text annotation | ||
| HL_6BOK_131 | 1/DB/1165:1171 | GNRA | geometric HL_3PDR_001 HL_37824.7 | |
| HL_6BOK_132 | 1/DB/1265:1270 | GNRA variation | geometric HL_5TBW_033 NA | |
| HL_6BOK_133 | 1/DB/1314:1323 | T-loop with 3 stacked bulged bases | geometric HL_4LFB_029 HL_02887.3 | |
| HL_6BOK_134 | 1/DB/1356:1366 | No text annotation | geometric HL_4LFB_030 HL_06226.4 | |
| HL_6BOK_135 | 1/DB/1449:1454 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6BOK_136 | 1/DB/1515:1520 | GNRA variation | geometric HL_4V88_222 NA | |
| HL_6BOK_137 | 1/EB/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_6BOK_138 | 1/EB/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_6BOK_139 | 1/EB/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_6BOK_140 | 1/EB/137B:141B | No text annotation | homologous HL_7RQB_004 NA | |
| HL_6BOK_141 | 1/EB/154:172 | No text annotation | ||
| HL_6BOK_142 | 1/EB/194:201 | No text annotation | homologous HL_5J7L_139 HL_30068.2 | |
| HL_6BOK_143 | 1/EB/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_6BOK_144 | 1/EB/246:252 | No text annotation | homologous HL_7A0S_008 HL_37369.2 | |
| HL_6BOK_145 | 1/EB/270K:270Q | No text annotation | homologous HL_8VTW_008 NA | |
| HL_6BOK_146 | 1/EB/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_6BOK_147 | 1/EB/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_6BOK_148 | 1/EB/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_6BOK_228 | 1/EB/383:391 | No text annotation | ||
| HL_6BOK_150 | 1/EB/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_6BOK_151 | 1/EB/462:467 | GNRA | homologous HL_5J7L_147 HL_37824.7 | |
| HL_6BOK_152 | 1/EB/487:493 | GNRA | homologous HL_4WF9_016 HL_37824.7 | |
| HL_6BOK_153 | 1/EB/544:549 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_6BOK_154 | 1/EB/566:575 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_6BOK_155 | 1/EB/611:617 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_6BOK_156 | 1/EB/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_6BOK_157 | 1/EB/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_6BOK_158 | 1/EB/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_6BOK_159 | 1/EB/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_6BOK_160 | 1/EB/779:785 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
| HL_6BOK_161 | 1/EB/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_6BOK_162 | 1/EB/882:894 | No text annotation | ||
| HL_6BOK_163 | 1/EB/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_6BOK_164 | 1/EB/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_6BOK_239 | 1/EB/1092:1099 | No text annotation | ||
| HL_6BOK_166 | 1/EB/1170:1179 | No text annotation | geometric HL_4LFB_004 HL_48417.5 | |
| HL_6BOK_167 | 1/EB/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_6BOK_168 | 1/EB/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_6BOK_169 | 1/EB/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_6BOK_170 | 1/EB/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_6BOK_171 | 1/EB/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6BOK_172 | 1/EB/1451:1459 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_6BOK_173 | 1/EB/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_6BOK_230 | 1/EB/1532:1539 | No text annotation | geometric HL_7KI3_001 HL_75660.5 | |
| HL_6BOK_175 | 1/EB/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_6BOK_176 | 1/EB/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6BOK_177 | 1/EB/1630B:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_6BOK_178 | 1/EB/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_6BOK_179 | 1/EB/1727:1733 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_6BOK_180 | 1/EB/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6BOK_181 | 1/EB/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_6BOK_182 | 1/EB/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6BOK_183 | 1/EB/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_6BOK_231 | 1/EB/1910:1920 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
| HL_6BOK_185 | 1/EB/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_6BOK_186 | 1/EB/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_6BOK_187 | 1/EB/2123:2175 | No text annotation | ||
| HL_6BOK_188 | 1/EB/2209:2215 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_6BOK_189 | 1/EB/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_6BOK_190 | 1/EB/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_6BOK_240 | 1/EB/2304:2312 | No text annotation | homologous HL_9DFE_198 HL_50860.2 | |
| HL_6BOK_192 | 1/EB/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_6BOK_193 | 1/EB/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_6BOK_194 | 1/EB/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_6BOK_195 | 1/EB/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_6BOK_196 | 1/EB/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_6BOK_197 | 1/EB/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_6BOK_198 | 1/EB/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_6BOK_199 | 1/EB/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6BOK_200 | 1/EB/2658:2663 | GNRA | geometric HL_5J7L_197 HL_37824.7 | |
| HL_6BOK_201 | 1/EB/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_6BOK_202 | 1/EB/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_6BOK_203 | 1/EB/2793:2803 | No text annotation | ||
| HL_6BOK_204 | 1/EB/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_6BOK_205 | 1/EB/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_6BOK_234 | 1/FB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_6BOK_206 | 1/FB/38:44 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_6BOK_207 | 1/FB/86:90 | GNRA | homologous HL_7A0S_070 HL_37824.7 | |
| HL_6BOK_208 | 1/GB/12:23 | No text annotation | homologous HL_5IB8_207 NA | |
| HL_6BOK_209 | 1/GB/31:39 | tRNA anticodon loop | homologous HL_1H3E_002 HL_77082.1 | |
| HL_6BOK_210 | 1/GB/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5E81_207 HL_28252.6 | |
| HL_6BOK_211 | 1/IA/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
| HL_6BOK_212 | 1/IA/31:39 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.5 | |
| HL_6BOK_213 | 1/IA/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_28252.6 | |
| HL_6BOK_214 | 1/LC/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
| HL_6BOK_215 | 1/LC/31:39 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.5 | |
| HL_6BOK_216 | 1/LC/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_28252.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6BOK_005 | No text annotation | ||
| HL_6BOK_013 | No text annotation | ||
| HL_6BOK_218 | No text annotation | ||
| HL_6BOK_044 | No text annotation | ||
| HL_6BOK_060 | No text annotation | ||
| HL_6BOK_220 | No text annotation | ||
| HL_6BOK_069 | tRNA D-loop | ||
| HL_6BOK_079 | No text annotation | ||
| HL_6BOK_223 | No text annotation | ||
| HL_6BOK_086 | No text annotation | ||
| HL_6BOK_224 | No text annotation | ||
| HL_6BOK_110 | No text annotation | ||
| HL_6BOK_118 | No text annotation | ||
| HL_6BOK_227 | No text annotation | ||
| HL_6BOK_149 | No text annotation | ||
| HL_6BOK_165 | No text annotation | ||
| HL_6BOK_229 | No text annotation | ||
| HL_6BOK_174 | tRNA D-loop | ||
| HL_6BOK_184 | No text annotation | ||
| HL_6BOK_232 | No text annotation | ||
| HL_6BOK_191 | No text annotation | ||
| HL_6BOK_233 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6BOK_001 | 1/A/30:32, 1/A/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_6BOK_002 | 1/A/44:45, 1/A/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.5 | |
| IL_6BOK_003 | 1/A/47:52, 1/A/359:361 | No text annotation | geometric IL_4LFB_003 IL_14177.2 | |
| IL_6BOK_004 | 1/A/54:56, 1/A/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_6BOK_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_6BOK_006 | 1/A/67:69, 1/A/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_6BOK_007 | 1/A/129A:131, 1/A/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_6BOK_008 | 1/A/132:136, 1/A/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_6BOK_009 | 1/A/148:153, 1/A/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_6BOK_010 | 1/A/186A:186C, 1/A/191E:191G | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_6BOK_011 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_6BOK_012 | 1/A/249:252, 1/A/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_6BOK_013 | 1/A/292:293, 1/A/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_6BOK_014 | 1/A/367:369, 1/A/392:393 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_6BOK_015 | 1/A/371:375, 1/A/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_6BOK_016 | 1/A/375:376, 1/A/387:389 | Single bulged G | homologous IL_4LFB_016 IL_00225.13 | |
| IL_6BOK_017 | 1/A/409:416, 1/A/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_6BOK_018 | 1/A/446:450, 1/A/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_6BOK_019 | 1/A/450:455, 1/A/477:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_6BOK_020 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_6BOK_021 | 1/A/515:521, 1/A/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6BOK_022 | 1/A/569:575, 1/A/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_6BOK_023 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_6BOK_024 | 1/A/594:596, 1/A/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_6BOK_025 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_6BOK_026 | 1/A/605:612, 1/A/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_6BOK_027 | 1/A/657:658, 1/A/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_6BOK_028 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_6BOK_346 | 1/A/673:677, 1/A/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_6BOK_030 | 1/A/683:688, 1/A/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_6BOK_031 | 1/A/774:778, 1/A/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_6BOK_032 | 1/A/779:783, 1/A/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_6BOK_033 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_6BOK_034 | 1/A/922:923, 1/A/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.5 | |
| IL_6BOK_035 | 1/A/925:927, 1/A/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_6BOK_036 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_6BOK_037 | 1/A/953:954, 1/A/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_6BOK_038 | 1/A/993:997, 1/A/1044:1045 | Minor groove platform | geometric IL_4LFB_039 IL_47078.3 | |
| IL_6BOK_372 | 1/A/1001:1008, 1/A/1021:1039 | No text annotation | ||
| IL_6BOK_040 | 1/A/1048:1050, 1/A/1208:1209 | Single bulged U | geometric IL_4LFB_042 IL_89505.4 | |
| IL_6BOK_042 | 1/A/1052:1056, 1/A/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_6BOK_043 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_6BOK_044 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_6BOK_045 | 1/A/1061:1063, 1/A/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_6BOK_373 | 1/A/1124:1127, 1/A/1145:1149 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_6BOK_047 | 1/A/1129:1132, 1/A/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_6BOK_048 | 1/A/1158:1161, 1/A/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_6BOK_049 | 1/A/1247:1253, 1/A/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_6BOK_050 | 1/A/1255:1258, 1/A/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_6BOK_051 | 1/A/1259:1260, 1/A/1274:1276 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_6BOK_374 | 1/A/1259:1262, 1/A/1273:1276 | Double sheared | homologous IL_4LFB_067 IL_09705.15 | |
| IL_6BOK_052 | 1/A/1260:1262, 1/A/1273:1274 | Minor groove platform | homologous IL_4LFB_054 IL_51454.2 | |
| IL_6BOK_053 | 1/A/1303:1308, 1/A/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_6BOK_054 | 1/A/1399:1401, 1/A/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_6BOK_349 | 1/A/1401:1404, 1/A/1497:1501 | No text annotation | homologous IL_4LFB_068 IL_65718.4 | |
| IL_6BOK_350 | 1/A/1405:1407, 1/A/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_6BOK_351 | 1/A/1407:1409, 1/A/1491:1494 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_6BOK_057 | 1/A/1412:1414, 1/A/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_6BOK_058 | 1/A/1416:1419, 1/A/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_6BOK_059 | 1/A/1431:1435, 1/A/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_6BOK_060 | 1/A/1435:1437, 1/A/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_87907.2 | |
| IL_6BOK_061 | 1/A/1440:1447, 1/A/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
| IL_6BOK_062 | 1/B/24:30, 1/B/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_6BOK_063 | 1/B/36:37, 1/B/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6BOK_064 | 1/B/43:44, 1/B/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_6BOK_065 | 1/B/81:85, 1/B/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_6BOK_066 | 1/B/183:184, 1/B/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_6BOK_067 | 1/B/188:194, 1/B/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_6BOK_068 | 1/B/239:245, 1/B/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_6BOK_070 | 1/B/273A:273B, 1/B/363F:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_6BOK_352 | 1/B/273:279, 1/B/361:363 | No text annotation | ||
| IL_6BOK_072 | 1/B/280:284, 1/B/357:360 | tSH-tHW | geometric IL_7RQB_057 NA | |
| IL_6BOK_073 | 1/B/288:290, 1/B/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_6BOK_074 | 1/B/293:295, 1/B/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6BOK_075 | 1/B/481:484, 1/B/496:509 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_6BOK_076 | 1/B/564:566, 1/B/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_07785.1 | |
| IL_6BOK_077 | 1/B/606:609B, 1/B/618B:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_6BOK_078 | 1/B/672:674, 1/B/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_87907.2 | |
| IL_6BOK_079 | 1/B/674:678, 1/B/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_6BOK_080 | 1/B/697:698, 1/B/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_6BOK_081 | 1/B/702:703, 1/B/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_6BOK_082 | 1/B/703:707, 1/B/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_6BOK_083 | 1/B/738:741, 1/B/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_6BOK_084 | 1/B/775:777, 1/B/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_6BOK_085 | 1/B/837:838, 1/B/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_6BOK_086 | 1/B/844:846, 1/B/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_6BOK_353 | 1/B/844:850, 1/B/928:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_6BOK_087 | 1/B/846:850, 1/B/928:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_6BOK_088 | 1/B/858:862, 1/B/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_6BOK_089 | 1/B/862:863, 1/B/913:915 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_6BOK_090 | 1/B/864:868, 1/B/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_6BOK_091 | 1/B/870:872, 1/B/905:907 | Isolated cWS basepair | homologous IL_7RQB_030 NA | |
| IL_6BOK_092 | 1/B/875:877, 1/B/899:902 | Minor groove platform with extra cWW | homologous IL_7RQB_031 NA | |
| IL_6BOK_093 | 1/B/877:879, 1/B/898:899 | Minor groove platform | geometric IL_7RQB_032 NA | |
| IL_6BOK_094 | 1/B/880:881, 1/B/895:897 | Single bulged A | homologous IL_7RQB_033 NA | |
| IL_6BOK_095 | 1/B/952:954, 1/B/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_6BOK_096 | 1/B/994:996, 1/B/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6BOK_097 | 1/B/998:1002, 1/B/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_6BOK_098 | 1/B/1004:1011, 1/B/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 IL_41203.4 | |
| IL_6BOK_099 | 1/B/1011:1013, 1/B/1149:1150 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_6BOK_100 | 1/B/1018:1024, 1/B/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_6BOK_101 | 1/B/1024:1030, 1/B/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_6BOK_102 | 1/B/1031:1034, 1/B/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6BOK_103 | 1/B/1042:1051, 1/B/1108:1113 | No text annotation | ||
| IL_6BOK_104 | 1/B/1055:1087, 1/B/1102:1104 | No text annotation | ||
| IL_6BOK_354 | 1/B/1055:1091, 1/B/1100:1104 | No text annotation | ||
| IL_6BOK_105 | 1/B/1087:1091, 1/B/1100:1102 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_51387.2 | |
| IL_6BOK_106 | 1/B/1196:1198, 1/B/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_6BOK_107 | 1/B/1202:1206, 1/B/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_6BOK_108 | 1/B/1208:1215, 1/B/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6BOK_109 | 1/B/1219:1221, 1/B/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_6BOK_110 | 1/B/1262:1269, 1/B/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_6BOK_375 | 1/B/1310:1313, 1/B/1603:1604 | Major groove platform; stack outside cWW | homologous IL_9DFE_049 IL_50694.7 | |
| IL_6BOK_111 | 1/B/1319:1323, 1/B/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_6BOK_112 | 1/B/1351:1355, 1/B/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_6BOK_113 | 1/B/1357:1361, 1/B/1370:1374 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_17136.7 | |
| IL_6BOK_114 | 1/B/1415:1416, 1/B/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_6BOK_115 | 1/B/1417:1421, 1/B/1577:1581 | UAA/GAN | geometric IL_4WF9_051 IL_89021.2 | |
| IL_6BOK_116 | 1/B/1433:1435, 1/B/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_6BOK_117 | 1/B/1437:1440, 1/B/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_6BOK_355 | 1/B/1448:1449, 1/B/1462:1463 | Single stack bend | homologous IL_9DFE_057 IL_26793.1 | |
| IL_6BOK_119 | 1/B/1450:1451, 1/B/1459:1461 | Single bulged A | homologous IL_7RQB_059 NA | |
| IL_6BOK_120 | 1/B/1469:1473, 1/B/1520:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_6BOK_121 | 1/B/1481:1483, 1/B/1506:1512 | No text annotation | ||
| IL_6BOK_122 | 1/B/1489:1491, 1/B/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_6BOK_123 | 1/B/1526:1530, 1/B/1541:1546B | No text annotation | homologous IL_7RQB_063 NA | |
| IL_6BOK_124 | 1/B/1651:1656, 1/B/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_6BOK_125 | 1/B/1663:1665, 1/B/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_6BOK_126 | 1/B/1666:1669, 1/B/1993:1994 | Major groove platform; stack outside cWW | homologous IL_5J7L_306 IL_50694.7 | |
| IL_6BOK_356 | 1/B/1666:1674, 1/B/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_6BOK_127 | 1/B/1669:1674, 1/B/1990:1993 | Intercalated tWH | geometric IL_7A0S_062 IL_76758.2 | |
| IL_6BOK_128 | 1/B/1686:1691, 1/B/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6BOK_129 | 1/B/1770:1771, 1/B/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_6BOK_130 | 1/B/1798:1804, 1/B/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6BOK_131 | 1/B/1837:1840, 1/B/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_6BOK_132 | 1/B/1841:1842, 1/B/1898:1901 | Major groove intercalation | homologous IL_7RQB_072 NA | |
| IL_6BOK_133 | 1/B/1846:1849, 1/B/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_6BOK_134 | 1/B/1851:1855, 1/B/1887:1891 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_6BOK_135 | 1/B/1856:1860, 1/B/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_6BOK_136 | 1/B/1933:1934, 1/B/1964:1967 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_6BOK_137 | 1/B/1934:1945, 1/B/1961:1964 | No text annotation | homologous IL_7RQB_077 NA | |
| IL_6BOK_138 | 1/B/2050:2052, 1/B/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6BOK_139 | 1/B/2054:2057, 1/B/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_6BOK_140 | 1/B/2067:2069, 1/B/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_6BOK_141 | 1/B/2070:2071, 1/B/2438:2441 | Minor groove platform | homologous IL_4WF9_081 IL_51454.2 | |
| IL_6BOK_142 | 1/B/2081:2083, 1/B/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6BOK_143 | 1/B/2085:2087, 1/B/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_6BOK_144 | 1/B/2107:2120, 1/B/2178:2182 | No text annotation | ||
| IL_6BOK_145 | 1/B/2297:2299, 1/B/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_6BOK_146 | 1/B/2350:2353, 1/B/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_6BOK_147 | 1/B/2401:2403, 1/B/2414:2415 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_6BOK_148 | 1/B/2453:2454, 1/B/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_6BOK_149 | 1/B/2454:2455, 1/B/2496:2498 | Major groove platform | geometric IL_4V9F_082 IL_48076.6 | |
| IL_6BOK_150 | 1/B/2457:2459, 1/B/2493:2494 | Major groove platform | geometric IL_4WF9_091 IL_48076.6 | |
| IL_6BOK_151 | 1/B/2459:2461, 1/B/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_51387.2 | |
| IL_6BOK_152 | 1/B/2466:2470, 1/B/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_6BOK_153 | 1/B/2507:2508, 1/B/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_6BOK_154 | 1/B/2510:2512, 1/B/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 IL_07785.1 | |
| IL_6BOK_155 | 1/B/2512:2513, 1/B/2571:2574 | No text annotation | homologous IL_4WF9_096 IL_42626.2 | |
| IL_6BOK_156 | 1/B/2522:2523, 1/B/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_6BOK_158 | 1/B/2591:2592, 1/B/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6BOK_159 | 1/B/2636:2640, 1/B/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6BOK_160 | 1/B/2652:2658, 1/B/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_6BOK_161 | 1/B/2680:2684, 1/B/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6BOK_162 | 1/B/2687:2691, 1/B/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_6BOK_163 | 1/B/2695:2696, 1/B/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_6BOK_164 | 1/B/2737:2742, 1/B/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_6BOK_165 | 1/B/2838:2839, 1/B/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6BOK_358 | 1/B/2843:2846, 1/B/2870:2874 | No text annotation | homologous IL_9DFE_108 IL_75294.1 | |
| IL_6BOK_167 | 1/B/2847:2852, 1/B/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_6BOK_168 | 1/C/17:18, 1/C/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_31462.5 | |
| IL_6BOK_169 | 1/C/23:28, 1/C/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_6BOK_170 | 1/C/30:31, 1/C/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_68140.4 | |
| IL_6BOK_171 | 1/C/34:38, 1/C/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_6BOK_172 | 1/C/71:79, 1/C/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_6BOK_173 | 1/DB/30:32, 1/DB/552:553 | Single bulged G | geometric IL_4LFB_001 IL_00225.13 | |
| IL_6BOK_377 | 1/DB/44:45, 1/DB/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.5 | |
| IL_6BOK_175 | 1/DB/47:52, 1/DB/359:361 | No text annotation | geometric IL_4LFB_003 IL_14177.2 | |
| IL_6BOK_176 | 1/DB/54:56, 1/DB/356:357 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_6BOK_177 | 1/DB/63:66, 1/DB/103:104 | Multiple bulged bases | geometric IL_6CZR_117 NA | |
| IL_6BOK_178 | 1/DB/67:69, 1/DB/99:102 | Isolated non-canonical cWW pair | geometric IL_4LFB_006 IL_87907.2 | |
| IL_6BOK_179 | 1/DB/129A:131, 1/DB/231:232 | Multiple bulged bases | geometric IL_4LFB_007 IL_33761.2 | |
| IL_6BOK_180 | 1/DB/132:136, 1/DB/227:230 | No text annotation | geometric IL_4LFB_008 IL_64231.5 | |
| IL_6BOK_181 | 1/DB/148:153, 1/DB/168:174 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_12745.1 | |
| IL_6BOK_182 | 1/DB/186A:186C, 1/DB/191E:191G | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_87907.2 | |
| IL_6BOK_183 | 1/DB/242:247, 1/DB/277:284 | Kink-turn with non-sequential stacking | geometric IL_4LFB_011 IL_46174.3 | |
| IL_6BOK_184 | 1/DB/249:252, 1/DB/274:275 | No text annotation | geometric IL_5J7L_015 IL_47074.2 | |
| IL_6BOK_185 | 1/DB/292:293, 1/DB/304:308 | C-loop | geometric IL_6CZR_125 NA | |
| IL_6BOK_186 | 1/DB/367:369, 1/DB/392:393 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_6BOK_187 | 1/DB/371:375, 1/DB/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_6BOK_188 | 1/DB/375:376, 1/DB/387:389 | Single bulged G | geometric IL_4LFB_016 IL_00225.13 | |
| IL_6BOK_189 | 1/DB/409:416, 1/DB/427:433 | No text annotation | geometric IL_4LFB_017 IL_28026.3 | |
| IL_6BOK_190 | 1/DB/446:450, 1/DB/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_88269.4 | |
| IL_6BOK_191 | 1/DB/450:455, 1/DB/477:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_6BOK_192 | 1/DB/504:511, 1/DB/540:541 | SSU/LSU pseudoknot | geometric IL_4LFB_020 IL_41203.4 | |
| IL_6BOK_193 | 1/DB/515:521, 1/DB/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6BOK_194 | 1/DB/569:575, 1/DB/880:881 | No text annotation | geometric IL_4LFB_022 IL_38186.6 | |
| IL_6BOK_195 | 1/DB/580:584, 1/DB/757:761 | tSH-tHW-tHS | geometric IL_4LFB_023 IL_17136.7 | |
| IL_6BOK_196 | 1/DB/594:596, 1/DB/644:645 | Major groove platform | geometric IL_4LFB_024 IL_48076.6 | |
| IL_6BOK_197 | 1/DB/597:598, 1/DB/640:643 | Major groove minor groove platform; mini C-loop | geometric IL_4LFB_025 IL_68140.4 | |
| IL_6BOK_198 | 1/DB/605:612, 1/DB/628:633 | No text annotation | geometric IL_4LFB_026 IL_78349.3 | |
| IL_6BOK_199 | 1/DB/657:658, 1/DB/747:749 | Major groove platform | geometric IL_4LFB_028 IL_48076.6 | |
| IL_6BOK_200 | 1/DB/662:666, 1/DB/740:743 | Tandem non-canonical cWW pairs | geometric IL_4LFB_029 IL_85033.2 | |
| IL_6BOK_360 | 1/DB/673:677, 1/DB/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_6BOK_202 | 1/DB/683:688, 1/DB/699:707 | Kink-turn | geometric IL_4LFB_031 IL_95727.1 | |
| IL_6BOK_203 | 1/DB/774:778, 1/DB/804:805 | Left turn | geometric IL_5J7L_036 IL_29346.2 | |
| IL_6BOK_204 | 1/DB/779:783, 1/DB/799:803 | tSH-tHW-tHS | geometric IL_5J7L_037 IL_17136.7 | |
| IL_6BOK_205 | 1/DB/887:894, 1/DB/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_5J7L_038 IL_41756.4 | |
| IL_6BOK_206 | 1/DB/922:923, 1/DB/1393:1395 | Single bulged A | geometric IL_4LFB_035 IL_31462.5 | |
| IL_6BOK_207 | 1/DB/925:927, 1/DB/1390:1391 | Single bulged G | geometric IL_4LFB_036 IL_00225.13 | |
| IL_6BOK_208 | 1/DB/933:935, 1/DB/1380:1384 | Minor groove platform | geometric IL_4LFB_037 IL_47078.3 | |
| IL_6BOK_209 | 1/DB/953:954, 1/DB/1226:1228 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_6BOK_210 | 1/DB/993:997, 1/DB/1044:1045 | Minor groove platform | geometric IL_4LFB_039 IL_47078.3 | |
| IL_6BOK_378 | 1/DB/1001:1008, 1/DB/1021:1039 | No text annotation | ||
| IL_6BOK_212 | 1/DB/1048:1050, 1/DB/1208:1209 | Single bulged U | geometric IL_4LFB_042 IL_89505.4 | |
| IL_6BOK_214 | 1/DB/1052:1056, 1/DB/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_6BOK_215 | 1/DB/1057:1058, 1/DB/1199:1203 | Minor groove platform | geometric IL_4LFB_045 IL_95583.2 | |
| IL_6BOK_216 | 1/DB/1060:1061, 1/DB/1195:1197 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_6BOK_217 | 1/DB/1061:1063, 1/DB/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_6BOK_379 | 1/DB/1124:1127, 1/DB/1145:1149 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_6BOK_219 | 1/DB/1129:1132, 1/DB/1142:1143 | Minor groove platform | geometric IL_3MXH_005 IL_15052.4 | |
| IL_6BOK_220 | 1/DB/1158:1161, 1/DB/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_6BOK_221 | 1/DB/1247:1253, 1/DB/1284:1290 | No text annotation | geometric IL_4LFB_051 IL_09129.2 | |
| IL_6BOK_222 | 1/DB/1255:1258, 1/DB/1277:1282 | 180 degree turn | geometric IL_4LFB_052 IL_11344.2 | |
| IL_6BOK_223 | 1/DB/1259:1260, 1/DB/1274:1276 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_6BOK_380 | 1/DB/1259:1262, 1/DB/1273:1276 | Double sheared | homologous IL_4LFB_067 IL_09705.15 | |
| IL_6BOK_224 | 1/DB/1260:1262, 1/DB/1273:1274 | Minor groove platform | geometric IL_4UYK_001 IL_51454.2 | |
| IL_6BOK_225 | 1/DB/1303:1308, 1/DB/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_85536.2 | |
| IL_6BOK_226 | 1/DB/1399:1401, 1/DB/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6BOK_363 | 1/DB/1401:1404, 1/DB/1497:1501 | No text annotation | homologous IL_4LFB_068 IL_65718.4 | |
| IL_6BOK_364 | 1/DB/1405:1407, 1/DB/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_6BOK_365 | 1/DB/1407:1409, 1/DB/1491:1494 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_6BOK_229 | 1/DB/1412:1414, 1/DB/1486:1488 | Isolated non-canonical cWW pair | geometric IL_5J7L_061 IL_87907.2 | |
| IL_6BOK_230 | 1/DB/1416:1419, 1/DB/1481:1484 | Double sheared | geometric IL_5J7L_062 IL_09705.15 | |
| IL_6BOK_231 | 1/DB/1431:1435, 1/DB/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_6BOK_232 | 1/DB/1435:1437, 1/DB/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_87907.2 | |
| IL_6BOK_233 | 1/DB/1440:1447, 1/DB/1459:1461 | Isolated basepair with bulged bases | geometric IL_6CZR_172 NA | |
| IL_6BOK_234 | 1/EB/24:30, 1/EB/510:516 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_6BOK_235 | 1/EB/36:37, 1/EB/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6BOK_236 | 1/EB/43:44, 1/EB/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_6BOK_237 | 1/EB/81:85, 1/EB/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_6BOK_238 | 1/EB/183:184, 1/EB/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_6BOK_239 | 1/EB/188:194, 1/EB/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_6BOK_240 | 1/EB/239:245, 1/EB/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_6BOK_242 | 1/EB/273A:273B, 1/EB/363F:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_6BOK_366 | 1/EB/273:279, 1/EB/361:363 | No text annotation | ||
| IL_6BOK_244 | 1/EB/280:284, 1/EB/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_6BOK_245 | 1/EB/288:290, 1/EB/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_6BOK_246 | 1/EB/293:295, 1/EB/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6BOK_247 | 1/EB/481:484, 1/EB/496:509 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_6BOK_248 | 1/EB/564:566, 1/EB/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_07785.1 | |
| IL_6BOK_249 | 1/EB/606:609B, 1/EB/618B:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_6BOK_250 | 1/EB/672:674, 1/EB/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_6BOK_251 | 1/EB/674:678, 1/EB/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_6BOK_252 | 1/EB/697:698, 1/EB/763:765 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_6BOK_253 | 1/EB/702:703, 1/EB/728:730 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_6BOK_254 | 1/EB/703:707, 1/EB/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_6BOK_255 | 1/EB/738:741, 1/EB/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_6BOK_256 | 1/EB/775:777, 1/EB/787:791 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_6BOK_257 | 1/EB/837:838, 1/EB/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_6BOK_258 | 1/EB/844:846, 1/EB/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_6BOK_367 | 1/EB/844:850, 1/EB/928:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_6BOK_259 | 1/EB/846:850, 1/EB/928:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_6BOK_260 | 1/EB/858:862, 1/EB/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_6BOK_261 | 1/EB/862:863, 1/EB/913:915 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_6BOK_262 | 1/EB/864:868, 1/EB/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_6BOK_263 | 1/EB/870:872, 1/EB/905:907 | Isolated cWS basepair | homologous IL_7RQB_030 NA | |
| IL_6BOK_264 | 1/EB/875:877, 1/EB/899:902 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_6BOK_265 | 1/EB/877:879, 1/EB/898:899 | Minor groove platform | homologous IL_7RQB_032 NA | |
| IL_6BOK_266 | 1/EB/880:881, 1/EB/895:897 | Single bulged A | homologous IL_7RQB_033 NA | |
| IL_6BOK_267 | 1/EB/952:954, 1/EB/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_6BOK_268 | 1/EB/994:996, 1/EB/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6BOK_269 | 1/EB/998:1002, 1/EB/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_6BOK_270 | 1/EB/1004:1011, 1/EB/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 IL_41203.4 | |
| IL_6BOK_271 | 1/EB/1011:1013, 1/EB/1149:1150 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_6BOK_272 | 1/EB/1018:1024, 1/EB/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_6BOK_273 | 1/EB/1024:1030, 1/EB/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_6BOK_274 | 1/EB/1031:1034, 1/EB/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6BOK_275 | 1/EB/1042:1051, 1/EB/1108:1113 | No text annotation | ||
| IL_6BOK_276 | 1/EB/1055:1087, 1/EB/1102:1104 | No text annotation | ||
| IL_6BOK_368 | 1/EB/1055:1091, 1/EB/1100:1104 | No text annotation | ||
| IL_6BOK_277 | 1/EB/1087:1091, 1/EB/1100:1102 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_51387.2 | |
| IL_6BOK_278 | 1/EB/1196:1198, 1/EB/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_6BOK_279 | 1/EB/1202:1206, 1/EB/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_6BOK_280 | 1/EB/1208:1215, 1/EB/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6BOK_281 | 1/EB/1219:1221, 1/EB/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_6BOK_282 | 1/EB/1262:1269, 1/EB/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_6BOK_381 | 1/EB/1310:1313, 1/EB/1603:1604 | Major groove platform; stack outside cWW | homologous IL_9DFE_049 IL_50694.7 | |
| IL_6BOK_283 | 1/EB/1319:1323, 1/EB/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_6BOK_284 | 1/EB/1351:1355, 1/EB/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_6BOK_285 | 1/EB/1357:1361, 1/EB/1370:1374 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_17136.7 | |
| IL_6BOK_286 | 1/EB/1415:1416, 1/EB/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_6BOK_287 | 1/EB/1417:1421, 1/EB/1577:1581 | UAA/GAN | geometric IL_4WF9_051 IL_89021.2 | |
| IL_6BOK_288 | 1/EB/1433:1435, 1/EB/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_6BOK_289 | 1/EB/1437:1440, 1/EB/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_6BOK_369 | 1/EB/1448:1449, 1/EB/1462:1463 | Single stack bend | homologous IL_9DFE_057 IL_26793.1 | |
| IL_6BOK_291 | 1/EB/1450:1451, 1/EB/1459:1461 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_6BOK_292 | 1/EB/1469:1473, 1/EB/1520:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_6BOK_293 | 1/EB/1481:1483, 1/EB/1506:1512 | No text annotation | ||
| IL_6BOK_294 | 1/EB/1489:1491, 1/EB/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_6BOK_295 | 1/EB/1526:1530, 1/EB/1541:1546B | No text annotation | homologous IL_7RQB_063 NA | |
| IL_6BOK_296 | 1/EB/1651:1656, 1/EB/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_6BOK_297 | 1/EB/1663:1665, 1/EB/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_6BOK_298 | 1/EB/1666:1669, 1/EB/1993:1994 | Major groove platform; stack outside cWW | homologous IL_5J7L_306 IL_50694.7 | |
| IL_6BOK_370 | 1/EB/1666:1674, 1/EB/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_6BOK_299 | 1/EB/1669:1674, 1/EB/1990:1993 | Intercalated tWH | geometric IL_7A0S_062 IL_76758.2 | |
| IL_6BOK_300 | 1/EB/1686:1691, 1/EB/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6BOK_301 | 1/EB/1770:1771, 1/EB/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_6BOK_302 | 1/EB/1798:1804, 1/EB/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6BOK_303 | 1/EB/1837:1840, 1/EB/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_6BOK_304 | 1/EB/1841:1842, 1/EB/1898:1901 | Major groove intercalation | homologous IL_7RQB_072 NA | |
| IL_6BOK_305 | 1/EB/1846:1849, 1/EB/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_6BOK_306 | 1/EB/1851:1855, 1/EB/1887:1891 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_6BOK_307 | 1/EB/1856:1860, 1/EB/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_6BOK_308 | 1/EB/1933:1934, 1/EB/1964:1967 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_6BOK_309 | 1/EB/1934:1945, 1/EB/1961:1964 | No text annotation | homologous IL_7RQB_077 NA | |
| IL_6BOK_310 | 1/EB/2050:2052, 1/EB/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6BOK_311 | 1/EB/2054:2057, 1/EB/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_6BOK_312 | 1/EB/2067:2069, 1/EB/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_6BOK_313 | 1/EB/2070:2071, 1/EB/2438:2441 | Minor groove platform | homologous IL_4WF9_081 IL_51454.2 | |
| IL_6BOK_314 | 1/EB/2081:2083, 1/EB/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_6BOK_315 | 1/EB/2085:2087, 1/EB/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_6BOK_316 | 1/EB/2107:2120, 1/EB/2178:2182 | No text annotation | ||
| IL_6BOK_317 | 1/EB/2297:2299, 1/EB/2317:2321 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_6BOK_318 | 1/EB/2350:2353, 1/EB/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_6BOK_319 | 1/EB/2401:2403, 1/EB/2414:2415 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_6BOK_320 | 1/EB/2453:2454, 1/EB/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_6BOK_321 | 1/EB/2454:2455, 1/EB/2496:2498 | Major groove platform | geometric IL_4V9F_082 IL_48076.6 | |
| IL_6BOK_322 | 1/EB/2457:2459, 1/EB/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
| IL_6BOK_323 | 1/EB/2459:2461, 1/EB/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7A0S_086 IL_51387.2 | |
| IL_6BOK_324 | 1/EB/2466:2470, 1/EB/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_6BOK_325 | 1/EB/2507:2508, 1/EB/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_6BOK_326 | 1/EB/2510:2512, 1/EB/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 IL_07785.1 | |
| IL_6BOK_327 | 1/EB/2512:2513, 1/EB/2571:2574 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_6BOK_328 | 1/EB/2522:2523, 1/EB/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_6BOK_330 | 1/EB/2591:2592, 1/EB/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6BOK_331 | 1/EB/2636:2640, 1/EB/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_6BOK_332 | 1/EB/2652:2658, 1/EB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_6BOK_333 | 1/EB/2680:2684, 1/EB/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6BOK_334 | 1/EB/2687:2691, 1/EB/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_6BOK_335 | 1/EB/2695:2696, 1/EB/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_6BOK_336 | 1/EB/2737:2742, 1/EB/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_6BOK_337 | 1/EB/2838:2839, 1/EB/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_6BOK_338 | 1/EB/2843:2846, 1/EB/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_6BOK_339 | 1/EB/2847:2852, 1/EB/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_6BOK_340 | 1/FB/17:18, 1/FB/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_31462.5 | |
| IL_6BOK_341 | 1/FB/23:28, 1/FB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_6BOK_342 | 1/FB/30:31, 1/FB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_68140.4 | |
| IL_6BOK_343 | 1/FB/34:38, 1/FB/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_6BOK_344 | 1/FB/71:79, 1/FB/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6BOK_345 | tWH-tWH-tHW-tHW | ||
| IL_6BOK_029 | No text annotation | ||
| IL_6BOK_347 | No text annotation | ||
| IL_6BOK_039 | No text annotation | ||
| IL_6BOK_041 | No text annotation | ||
| IL_6BOK_046 | No text annotation | ||
| IL_6BOK_348 | tSH-tHW-tHS-cWW | ||
| IL_6BOK_055 | No text annotation | ||
| IL_6BOK_056 | No text annotation | ||
| IL_6BOK_069 | No text annotation | ||
| IL_6BOK_071 | No text annotation | ||
| IL_6BOK_118 | Multiple bulged bases | ||
| IL_6BOK_376 | No text annotation | ||
| IL_6BOK_357 | Other IL | ||
| IL_6BOK_157 | No text annotation | ||
| IL_6BOK_166 | No text annotation | ||
| IL_6BOK_174 | Isolated non-canonical cWW pair | ||
| IL_6BOK_359 | tWH-tWH-tHW-tHW | ||
| IL_6BOK_201 | No text annotation | ||
| IL_6BOK_361 | No text annotation | ||
| IL_6BOK_211 | No text annotation | ||
| IL_6BOK_213 | Isolated non-canonical cWW pair | ||
| IL_6BOK_218 | No text annotation | ||
| IL_6BOK_362 | tSH-tHW-tHS-cWW | ||
| IL_6BOK_227 | No text annotation | ||
| IL_6BOK_228 | No text annotation | ||
| IL_6BOK_241 | No text annotation | ||
| IL_6BOK_243 | No text annotation | ||
| IL_6BOK_290 | Multiple bulged bases | ||
| IL_6BOK_371 | Isolated non-canonical cWW pair | ||
| IL_6BOK_329 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6BOK_001 | 1/A/46:47, 1/A/361:367, 1/A/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_6BOK_051 | 1/A/46:52, 1/A/359:367, 1/A/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_6BOK_002 | 1/A/586:588, 1/A/651:655, 1/A/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_6BOK_003 | 1/A/672:673, 1/A/717:725, 1/A/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_6BOK_004 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_6BOK_005 | 1/A/936:939, 1/A/1344:1350, 1/A/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_6BOK_006 | 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_6BOK_007 | 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_6BOK_008 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_6BOK_052 | 1/A/990:997, 1/A/1044:1047, 1/A/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_6BOK_009 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_6BOK_067 | 1/A/1073:1074, 1/A/1083:1086, 1/A/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_6BOK_011 | 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | No text annotation | homologous J3_4LFB_008 J3_82365.4 | |
| J3_6BOK_053 | 1/A/1116:1118, 1/A/1155:1161, 1/A/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_6BOK_012 | 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_6BOK_013 | 1/B/30:31, 1/B/474:481, 1/B/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6BOK_054 | 1/B/30:31, 1/B/474:484, 1/B/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_6BOK_055 | 1/B/32:35, 1/B/445:461, 1/B/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_6BOK_014 | 1/B/56:57, 1/B/70:76, 1/B/110:114 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_6BOK_056 | 1/B/269:270, 1/B/270:271, 1/B/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_6BOK_016 | 1/B/683:689, 1/B/773:775, 1/B/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_6BOK_017 | 1/B/698:700, 1/B/732:736, 1/B/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6BOK_018 | 1/B/1298:1303, 1/B/1625:1627, 1/B/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6BOK_019 | 1/B/1306:1309, 1/B/1605:1611, 1/B/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_6BOK_020 | 1/B/1344:1350, 1/B/1381:1385, 1/B/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_6BOK_057 | 1/B/1424:1429, 1/B/1564:1565, 1/B/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_6BOK_021 | 1/B/2091:2093, 1/B/2196:2205, 1/B/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_6BOK_058 | 1/B/2282:2284, 1/B/2384:2395, 1/B/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_6BOK_022 | 1/B/2295:2297, 1/B/2321:2323, 1/B/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_6BOK_023 | 1/B/2517:2520, 1/B/2545:2547, 1/B/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_6BOK_024 | 1/B/2814:2815, 1/B/2831:2836, 1/B/2882:2886 | No text annotation | homologous J3_4WF9_021 J3_76911.2 | |
| J3_6BOK_025 | 1/C/11:16, 1/C/68:69, 1/C/107:109 | No text annotation | homologous J3_7RQB_015 NA | |
| J3_6BOK_026 | 1/DB/46:47, 1/DB/361:367, 1/DB/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_6BOK_059 | 1/DB/46:52, 1/DB/359:367, 1/DB/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_6BOK_027 | 1/DB/586:588, 1/DB/651:655, 1/DB/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_6BOK_028 | 1/DB/672:673, 1/DB/717:725, 1/DB/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_6BOK_029 | 1/DB/826:829, 1/DB/857:861, 1/DB/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_6BOK_030 | 1/DB/936:939, 1/DB/1344:1350, 1/DB/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_6BOK_031 | 1/DB/943:946, 1/DB/1235:1237, 1/DB/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_6BOK_032 | 1/DB/955:962, 1/DB/973:984, 1/DB/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_6BOK_033 | 1/DB/990:993, 1/DB/1045:1047, 1/DB/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_6BOK_060 | 1/DB/990:997, 1/DB/1044:1047, 1/DB/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_6BOK_034 | 1/DB/1063:1068, 1/DB/1107:1113, 1/DB/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_6BOK_068 | 1/DB/1073:1074, 1/DB/1083:1086, 1/DB/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_6BOK_036 | 1/DB/1116:1118, 1/DB/1155:1158, 1/DB/1181:1184 | No text annotation | homologous J3_4LFB_008 J3_82365.4 | |
| J3_6BOK_061 | 1/DB/1116:1118, 1/DB/1155:1161, 1/DB/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_6BOK_037 | 1/DB/1237:1241, 1/DB/1296:1303, 1/DB/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_6BOK_038 | 1/EB/30:31, 1/EB/474:481, 1/EB/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6BOK_062 | 1/EB/30:31, 1/EB/474:484, 1/EB/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_6BOK_063 | 1/EB/32:35, 1/EB/445:461, 1/EB/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_6BOK_039 | 1/EB/56:57, 1/EB/70:76, 1/EB/110:114 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_6BOK_064 | 1/EB/269:270, 1/EB/270:271, 1/EB/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_6BOK_041 | 1/EB/683:689, 1/EB/773:775, 1/EB/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_6BOK_042 | 1/EB/698:700, 1/EB/732:736, 1/EB/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6BOK_043 | 1/EB/1298:1303, 1/EB/1625:1627, 1/EB/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_6BOK_044 | 1/EB/1306:1309, 1/EB/1605:1611, 1/EB/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_6BOK_045 | 1/EB/1344:1350, 1/EB/1381:1385, 1/EB/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_6BOK_065 | 1/EB/1424:1429, 1/EB/1564:1565, 1/EB/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_6BOK_046 | 1/EB/2091:2093, 1/EB/2196:2205, 1/EB/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_6BOK_066 | 1/EB/2282:2284, 1/EB/2384:2395, 1/EB/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_6BOK_047 | 1/EB/2295:2297, 1/EB/2321:2323, 1/EB/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_6BOK_048 | 1/EB/2517:2520, 1/EB/2545:2547, 1/EB/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_6BOK_049 | 1/EB/2814:2815, 1/EB/2831:2836, 1/EB/2882:2886 | No text annotation | homologous J3_4WF9_021 J3_76911.2 | |
| J3_6BOK_050 | 1/FB/11:16, 1/FB/68:69, 1/FB/107:109 | No text annotation | homologous J3_7RQB_015 NA | |
| J4_6BOK_001 | 1/A/115:122, 1/A/239:240, 1/A/286:289, 1/A/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_6BOK_002 | 1/A/142:144, 1/A/178:183, 1/A/194:198, 1/A/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_6BOK_003 | 1/A/575:577, 1/A/764:769, 1/A/810:821, 1/A/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_6BOK_004 | 1/B/268:269, 1/B/370:375, 1/B/399:406, 1/B/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_6BOK_005 | 1/B/297:301, 1/B/316:319, 1/B/323:325, 1/B/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_6BOK_006 | 1/B/601:604, 1/B/624:628, 1/B/635:638, 1/B/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_6BOK_007 | 1/B/1270:1276, 1/B/1294:1295, 1/B/1645:1648, 1/B/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_6BOK_008 | 1/B/1310:1314, 1/B/1338:1343, 1/B/1404:1405, 1/B/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_6BOK_033 | 1/B/1313:1314, 1/B/1338:1343, 1/B/1404:1405, 1/B/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_6BOK_009 | 1/B/1444:1445, 1/B/1466:1467, 1/B/1525:1526, 1/B/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_6BOK_010 | 1/B/1674:1682, 1/B/1706:1707, 1/B/1751:1764, 1/B/1988:1990 | No text annotation | ||
| J4_6BOK_011 | 1/B/1772:1776, 1/B/1788:1792, 1/B/1827:1830, 1/B/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_6BOK_012 | 1/B/1833:1835, 1/B/1905:1906, 1/B/1924:1933, 1/B/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_6BOK_013 | 1/B/2285:2289, 1/B/2343:2347, 1/B/2370:2372, 1/B/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_6BOK_014 | 1/B/2643:2646, 1/B/2674:2676, 1/B/2731:2735, 1/B/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_6BOK_034 | 1/D/7:10, 1/D/25:27, 1/D/43:49, 1/D/65:66 | tRNA junction | homologous J4_4V9Q_031 J4_70449.27 | |
| J4_6BOK_016 | 1/DB/115:122, 1/DB/239:240, 1/DB/286:289, 1/DB/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_6BOK_017 | 1/DB/142:144, 1/DB/178:183, 1/DB/194:198, 1/DB/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_6BOK_018 | 1/DB/575:577, 1/DB/764:769, 1/DB/810:821, 1/DB/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_6BOK_019 | 1/EB/268:269, 1/EB/370:375, 1/EB/399:406, 1/EB/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_6BOK_020 | 1/EB/297:301, 1/EB/316:319, 1/EB/323:325, 1/EB/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_6BOK_021 | 1/EB/601:604, 1/EB/624:628, 1/EB/635:638, 1/EB/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_6BOK_022 | 1/EB/1270:1276, 1/EB/1294:1295, 1/EB/1645:1648, 1/EB/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_6BOK_023 | 1/EB/1310:1314, 1/EB/1338:1343, 1/EB/1404:1405, 1/EB/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_6BOK_035 | 1/EB/1313:1314, 1/EB/1338:1343, 1/EB/1404:1405, 1/EB/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_6BOK_024 | 1/EB/1444:1445, 1/EB/1466:1467, 1/EB/1525:1526, 1/EB/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_6BOK_025 | 1/EB/1674:1682, 1/EB/1706:1707, 1/EB/1751:1764, 1/EB/1988:1990 | No text annotation | ||
| J4_6BOK_026 | 1/EB/1772:1776, 1/EB/1788:1792, 1/EB/1827:1830, 1/EB/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_6BOK_027 | 1/EB/1833:1835, 1/EB/1905:1906, 1/EB/1924:1933, 1/EB/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_6BOK_028 | 1/EB/2285:2289, 1/EB/2343:2347, 1/EB/2370:2372, 1/EB/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_6BOK_029 | 1/EB/2643:2646, 1/EB/2674:2676, 1/EB/2731:2735, 1/EB/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_6BOK_036 | 1/GB/7:10, 1/GB/25:27, 1/GB/43:49, 1/GB/65:66 | tRNA junction | homologous J4_4V9Q_031 J4_70449.27 | |
| J4_6BOK_031 | 1/IA/7:10, 1/IA/25:27, 1/IA/43:49, 1/IA/65:66 | No text annotation | homologous J4_9DFC_015 J4_70449.27 | |
| J4_6BOK_032 | 1/LC/7:10, 1/LC/25:27, 1/LC/43:49, 1/LC/65:66 | No text annotation | homologous J4_9DFC_015 J4_70449.27 | |
| J5_6BOK_001 | 1/A/36:39, 1/A/403:406, 1/A/436:442, 1/A/492:500, 1/A/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_6BOK_002 | 1/A/58:61, 1/A/106:113, 1/A/314:316, 1/A/337:339, 1/A/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_6BOK_003 | 1/B/47:54, 1/B/116:121, 1/B/130:131, 1/B/148:150, 1/B/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_6BOK_004 | 1/B/268:270, 1/B/270:271, 1/B/366:375, 1/B/399:406, 1/B/421:424 | No text annotation | ||
| J5_6BOK_005 | 1/B/531:533, 1/B/560:564, 1/B/577:579, 1/B/1261:1262, 1/B/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_6BOK_006 | 1/B/584:589, 1/B/668:671, 1/B/809:812, 1/B/1195:1196, 1/B/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_6BOK_007 | 1/B/2057:2064, 1/B/2446:2453, 1/B/2500:2507, 1/B/2582:2588, 1/B/2606:2611 | No text annotation | ||
| J5_6BOK_008 | 1/B/2074:2077, 1/B/2243:2246, 1/B/2258:2259, 1/B/2281:2282, 1/B/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_6BOK_009 | 1/DB/36:39, 1/DB/403:406, 1/DB/436:442, 1/DB/492:500, 1/DB/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_6BOK_010 | 1/DB/58:61, 1/DB/106:113, 1/DB/314:316, 1/DB/337:339, 1/DB/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_6BOK_011 | 1/EB/47:54, 1/EB/116:121, 1/EB/130:131, 1/EB/148:150, 1/EB/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_6BOK_012 | 1/EB/268:270, 1/EB/270:271, 1/EB/366:375, 1/EB/399:406, 1/EB/421:424 | No text annotation | ||
| J5_6BOK_013 | 1/EB/531:533, 1/EB/560:564, 1/EB/577:579, 1/EB/1261:1262, 1/EB/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_6BOK_014 | 1/EB/584:589, 1/EB/668:671, 1/EB/809:812, 1/EB/1195:1196, 1/EB/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_6BOK_015 | 1/EB/2057:2064, 1/EB/2446:2453, 1/EB/2500:2507, 1/EB/2582:2588, 1/EB/2606:2611 | No text annotation | ||
| J5_6BOK_016 | 1/EB/2074:2077, 1/EB/2243:2246, 1/EB/2258:2259, 1/EB/2281:2282, 1/EB/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J6_6BOK_001 | 1/B/45:46, 1/B/179:183, 1/B/214:224, 1/B/231:235, 1/B/262:266, 1/B/426:433 | No text annotation | ||
| J6_6BOK_002 | 1/B/2074:2077, 1/B/2243:2246, 1/B/2258:2259, 1/B/2281:2284, 1/B/2384:2395, 1/B/2421:2435 | No text annotation | ||
| J6_6BOK_003 | 1/EB/45:46, 1/EB/179:183, 1/EB/214:224, 1/EB/231:235, 1/EB/262:266, 1/EB/426:433 | No text annotation | ||
| J6_6BOK_004 | 1/EB/2074:2077, 1/EB/2243:2246, 1/EB/2258:2259, 1/EB/2281:2284, 1/EB/2384:2395, 1/EB/2421:2435 | No text annotation | ||
| J7_6BOK_001 | 1/B/817:822, 1/B/835:836, 1/B/943:946, 1/B/971:976, 1/B/987:991, 1/B/1163:1164, 1/B/1185:1190 | No text annotation | ||
| J7_6BOK_002 | 1/EB/817:822, 1/EB/835:836, 1/EB/943:946, 1/EB/971:976, 1/EB/987:991, 1/EB/1163:1164, 1/EB/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6BOK_010 | No text annotation | ||
| J3_6BOK_015 | No text annotation | ||
| J3_6BOK_035 | No text annotation | ||
| J3_6BOK_040 | No text annotation | ||
| J4_6BOK_015 | No text annotation | ||
| J4_6BOK_030 | No text annotation |
Coloring options: