Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6BOK_0011/A/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_6BOK_0021/A/81:88No text annotation
Not in a motif group
HL_6BOK_0031/A/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.1
HL_6BOK_0041/A/186G:191ANo text annotation
Not in a motif group
homologous
HL_4LFB_004
HL_10278.1
HL_6BOK_0051/A/200:217No text annotation
Not in a motif group
HL_6BOK_0061/A/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_6BOK_0071/A/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_6BOK_0081/A/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_6BOK_0091/A/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_6BOK_0101/A/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_6BOK_0111/A/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_6BOK_0121/A/458:474No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_6BOK_0131/A/521:528No text annotation
Not in a motif group
homologous
HL_4LFB_013
NA
HL_6BOK_0141/A/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_6BOK_0151/A/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_6BOK_0161/A/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_6BOK_0171/A/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_6BOK_0181/A/838:848No text annotation
Not in a motif group
homologous
HL_6CZR_089
HL_53837.1
HL_6BOK_0191/A/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_6BOK_0201/A/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_6BOK_0211/A/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_6BOK_0221/A/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_6BOK_0231/A/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_6BOK_0241/A/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_6BOK_0251/A/1133:1141No text annotation
Not in a motif group
HL_6BOK_0261/A/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_6BOK_0271/A/1265:1270GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_42097.1
HL_6BOK_0281/A/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_6BOK_0291/A/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_6BOK_0301/A/1449:1454No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_6BOK_0311/A/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_6BOK_0321/B/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_6BOK_0331/B/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_6BOK_0341/B/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_6BOK_0351/B/137B:141BNo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.2
HL_6BOK_0361/B/154:172No text annotation
Not in a motif group
HL_6BOK_0371/B/194:201No text annotation
Not in a motif group
geometric
HL_5J7L_139
HL_06192.2
HL_6BOK_0381/B/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_6BOK_0391/B/246:252No text annotation
Not in a motif group
homologous
HL_7A0S_008
HL_67216.7
HL_6BOK_0401/B/270K:270QNo text annotation
Not in a motif group
HL_6BOK_0411/B/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_6BOK_0421/B/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_6BOK_0431/B/327:335No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.8
HL_6BOK_0441/B/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_6BOK_0451/B/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_6BOK_0461/B/462:467GNRA
Not in a motif group
homologous
HL_5J7L_147
HL_42097.1
HL_6BOK_0471/B/487:493GNRA
Not in a motif group
homologous
HL_4WF9_016
HL_42097.1
HL_6BOK_0481/B/544:549No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_6BOK_0491/B/566:575No text annotation
Not in a motif group
geometric
HL_7RQB_018
HL_89380.2
HL_6BOK_0501/B/611:617No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_6BOK_0511/B/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.1
HL_6BOK_0521/B/641:647No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_42097.1
HL_6BOK_0531/B/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_6BOK_0541/B/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_6BOK_0551/B/779:785No text annotation
Not in a motif group
homologous
HL_5J7L_156
HL_74322.1
HL_6BOK_0561/B/826:831No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_64365.1
HL_6BOK_0571/B/882:894No text annotation
Not in a motif group
HL_6BOK_0581/B/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_6BOK_0591/B/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_6BOK_0601/B/1091:1100No text annotation
Not in a motif group
HL_6BOK_0611/B/1170:1179No text annotation
Not in a motif group
HL_6BOK_0621/B/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_6BOK_0631/B/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_6BOK_0641/B/1324:1330No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_6BOK_0651/B/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_6BOK_0661/B/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_6BOK_0671/B/1451:1459No text annotation
Not in a motif group
geometric
HL_7RQB_037
HL_32426.1
HL_6BOK_0681/B/1492:1498No text annotation
Not in a motif group
homologous
HL_7RQB_038
HL_46680.1
HL_6BOK_0691/B/1531:1540No text annotation
Not in a motif group
HL_6BOK_0701/B/1565:1568No text annotation
Not in a motif group
homologous
HL_5J7L_172
HL_38927.2
HL_6BOK_0711/B/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_6BOK_0721/B/1630B:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_6BOK_0731/B/1691:1696UNCG
Not in a motif group
homologous
HL_5J7L_175
HL_03562.2
HL_6BOK_0741/B/1727:1733No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_6BOK_0751/B/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_6BOK_0761/B/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_6BOK_0771/B/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_6BOK_0781/B/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_6BOK_0791/B/1909:1921No text annotation
Not in a motif group
homologous
HL_7RQB_048
NA
HL_6BOK_0801/B/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_6BOK_0811/B/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_6BOK_0821/B/2123:2175No text annotation
Not in a motif group
HL_6BOK_0831/B/2209:2215No text annotation
Not in a motif group
homologous
HL_7RQB_052
HL_98426.1
HL_6BOK_0841/B/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_6BOK_0851/B/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_6BOK_0861/B/2302:2314No text annotation
Not in a motif group
HL_6BOK_0871/B/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_6BOK_0881/B/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_6BOK_0891/B/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_6BOK_0901/B/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_6BOK_0911/B/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_6BOK_0921/B/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_6BOK_0931/B/2551:2557No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_6BOK_0941/B/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_6BOK_0951/B/2658:2663GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_42097.1
HL_6BOK_0961/B/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_6BOK_0971/B/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_6BOK_0981/B/2793:2803No text annotation
Not in a motif group
HL_6BOK_0991/B/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_6BOK_1001/B/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_6BOK_1011/C/38:44No text annotation
Not in a motif group
geometric
HL_7RQB_070
HL_87939.1
HL_6BOK_1021/C/86:90No text annotation
Not in a motif group
homologous
HL_7A0S_070
HL_42097.1
HL_6BOK_1031/D/12:23No text annotation
Not in a motif group
homologous
HL_5IB8_207
NA
HL_6BOK_1041/D/31:39No text annotation
Not in a motif group
homologous
HL_1H3E_002
NA
HL_6BOK_1051/D/53:61No text annotation
Not in a motif group
homologous
HL_5E81_207
NA
HL_6BOK_1061/DB/12:22No text annotation
Not in a motif group
geometric
HL_4LFB_001
HL_89881.2
HL_6BOK_1071/DB/81:88No text annotation
Not in a motif group
HL_6BOK_1081/DB/158:163GNRA
Not in a motif group
geometric
HL_4LFB_003
HL_42097.1
HL_6BOK_1091/DB/186G:191ANo text annotation
Not in a motif group
geometric
HL_4LFB_004
HL_10278.1
HL_6BOK_1101/DB/200:217No text annotation
Not in a motif group
HL_6BOK_1111/DB/259:267No text annotation
Not in a motif group
geometric
HL_4LFB_006
HL_69023.2
HL_6BOK_1121/DB/296:301GNRA
Not in a motif group
geometric
HL_4LFB_007
HL_42097.1
HL_6BOK_1131/DB/320:333No text annotation
Not in a motif group
geometric
HL_4LFB_008
HL_81205.2
HL_6BOK_1141/DB/342:347UNCG
Not in a motif group
geometric
HL_4LFB_009
HL_03562.2
HL_6BOK_1151/DB/379:384GNRA
Not in a motif group
geometric
HL_4LFB_010
HL_42097.1
HL_6BOK_1161/DB/419:424UNCG
Not in a motif group
geometric
HL_5Y85_004
HL_03562.2
HL_6BOK_1171/DB/458:474No text annotation
Not in a motif group
geometric
HL_4LFB_012
HL_43656.2
HL_6BOK_1181/DB/521:528No text annotation
Not in a motif group
geometric
HL_2Y9H_003
HL_16173.1
HL_6BOK_1191/DB/617:623No text annotation
Not in a motif group
geometric
HL_4LFB_014
HL_26881.1
HL_6BOK_1201/DB/689:698No text annotation
Not in a motif group
geometric
HL_4LFB_015
HL_12326.1
HL_6BOK_1211/DB/726:731Other HL
Not in a motif group
geometric
HL_4LFB_016
HL_87030.2
HL_6BOK_1221/DB/786:796No text annotation
Not in a motif group
geometric
HL_4LFB_017
HL_12326.1
HL_6BOK_1231/DB/838:848No text annotation
Not in a motif group
homologous
HL_6CZR_089
HL_53837.1
HL_6BOK_1241/DB/862:867GNRA
Not in a motif group
geometric
HL_4LFB_019
HL_42097.1
HL_6BOK_1251/DB/897:902GNRA
Not in a motif group
geometric
HL_4V9F_048
HL_42097.1
HL_6BOK_1261/DB/963:972No text annotation
Not in a motif group
geometric
HL_4V88_212
HL_73530.2
HL_6BOK_1271/DB/1012:1017GNRA
Not in a motif group
geometric
HL_4LFB_022
HL_42097.1
HL_6BOK_1281/DB/1076:1081GNRA
Not in a motif group
geometric
HL_4V9F_065
HL_42097.1
HL_6BOK_1291/DB/1089:1096No text annotation
Not in a motif group
geometric
HL_4LFB_025
HL_71554.2
HL_6BOK_1301/DB/1133:1141No text annotation
Not in a motif group
HL_6BOK_1311/DB/1165:1171GNRA
Not in a motif group
geometric
HL_3PDR_001
HL_42097.1
HL_6BOK_1321/DB/1265:1270Other HL
Not in a motif group
geometric
HL_5TBW_033
HL_76539.2
HL_6BOK_1331/DB/1314:1323No text annotation
Not in a motif group
geometric
HL_4LFB_029
HL_89380.2
HL_6BOK_1341/DB/1356:1366No text annotation
Not in a motif group
geometric
HL_4LFB_030
HL_96366.1
HL_6BOK_1351/DB/1449:1454No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_6BOK_1361/DB/1515:1520Other HL
Not in a motif group
geometric
HL_4V88_222
HL_16173.1
HL_6BOK_1371/EB/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_6BOK_1381/EB/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_6BOK_1391/EB/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_6BOK_1401/EB/137B:141BNo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.2
HL_6BOK_1411/EB/154:172No text annotation
Not in a motif group
HL_6BOK_1421/EB/194:201No text annotation
Not in a motif group
homologous
HL_5J7L_139
HL_06192.2
HL_6BOK_1431/EB/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_6BOK_1441/EB/246:252No text annotation
Not in a motif group
homologous
HL_7A0S_008
HL_67216.7
HL_6BOK_1451/EB/270K:270QNo text annotation
Not in a motif group
HL_6BOK_1461/EB/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_6BOK_1471/EB/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_6BOK_1481/EB/327:335No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.8
HL_6BOK_1491/EB/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_6BOK_1501/EB/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_6BOK_1511/EB/462:467GNRA
Not in a motif group
homologous
HL_5J7L_147
HL_42097.1
HL_6BOK_1521/EB/487:493GNRA
Not in a motif group
homologous
HL_4WF9_016
HL_42097.1
HL_6BOK_1531/EB/544:549No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_6BOK_1541/EB/566:575No text annotation
Not in a motif group
geometric
HL_7RQB_018
HL_89380.2
HL_6BOK_1551/EB/611:617No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_6BOK_1561/EB/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.1
HL_6BOK_1571/EB/641:647No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_42097.1
HL_6BOK_1581/EB/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_6BOK_1591/EB/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_6BOK_1601/EB/779:785No text annotation
Not in a motif group
homologous
HL_5J7L_156
HL_74322.1
HL_6BOK_1611/EB/826:831No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_64365.1
HL_6BOK_1621/EB/882:894No text annotation
Not in a motif group
HL_6BOK_1631/EB/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_6BOK_1641/EB/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_6BOK_1651/EB/1091:1100No text annotation
Not in a motif group
HL_6BOK_1661/EB/1170:1179No text annotation
Not in a motif group
HL_6BOK_1671/EB/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_6BOK_1681/EB/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_6BOK_1691/EB/1324:1330No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_6BOK_1701/EB/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_6BOK_1711/EB/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_6BOK_1721/EB/1451:1459No text annotation
Not in a motif group
geometric
HL_7RQB_037
HL_32426.1
HL_6BOK_1731/EB/1492:1498No text annotation
Not in a motif group
homologous
HL_7RQB_038
HL_46680.1
HL_6BOK_1741/EB/1531:1540No text annotation
Not in a motif group
HL_6BOK_1751/EB/1565:1568No text annotation
Not in a motif group
homologous
HL_5J7L_172
HL_38927.2
HL_6BOK_1761/EB/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_6BOK_1771/EB/1630B:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_6BOK_1781/EB/1691:1696UNCG
Not in a motif group
homologous
HL_5J7L_175
HL_03562.2
HL_6BOK_1791/EB/1727:1733No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_6BOK_1801/EB/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_6BOK_1811/EB/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_6BOK_1821/EB/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_6BOK_1831/EB/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_6BOK_1841/EB/1909:1921No text annotation
Not in a motif group
homologous
HL_7RQB_048
NA
HL_6BOK_1851/EB/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_6BOK_1861/EB/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_6BOK_1871/EB/2123:2175No text annotation
Not in a motif group
HL_6BOK_1881/EB/2209:2215No text annotation
Not in a motif group
homologous
HL_7RQB_052
HL_98426.1
HL_6BOK_1891/EB/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_6BOK_1901/EB/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_6BOK_1911/EB/2302:2314No text annotation
Not in a motif group
HL_6BOK_1921/EB/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_6BOK_1931/EB/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_6BOK_1941/EB/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_6BOK_1951/EB/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_6BOK_1961/EB/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_6BOK_1971/EB/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_6BOK_1981/EB/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_6BOK_1991/EB/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_6BOK_2001/EB/2658:2663GNRA
Not in a motif group
geometric
HL_5J7L_197
HL_42097.1
HL_6BOK_2011/EB/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_6BOK_2021/EB/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_6BOK_2031/EB/2793:2803No text annotation
Not in a motif group
HL_6BOK_2041/EB/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_6BOK_2051/EB/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_6BOK_2061/FB/38:44No text annotation
Not in a motif group
geometric
HL_7RQB_070
HL_87939.1
HL_6BOK_2071/FB/86:90No text annotation
Not in a motif group
homologous
HL_7A0S_070
HL_42097.1
HL_6BOK_2081/GB/12:23No text annotation
Not in a motif group
homologous
HL_5IB8_207
NA
HL_6BOK_2091/GB/31:39No text annotation
Not in a motif group
homologous
HL_1H3E_002
NA
HL_6BOK_2101/GB/53:61No text annotation
Not in a motif group
homologous
HL_5E81_207
NA
HL_6BOK_2111/IA/13:22No text annotation
Not in a motif group
homologous
HL_1QF6_001
NA
HL_6BOK_2121/IA/31:39No text annotation
Not in a motif group
homologous
HL_5E81_212
NA
HL_6BOK_2131/IA/53:61No text annotation
Not in a motif group
homologous
HL_6CFJ_108
NA
HL_6BOK_2141/LC/13:22No text annotation
Not in a motif group
homologous
HL_1QF6_001
NA
HL_6BOK_2151/LC/31:39No text annotation
Not in a motif group
homologous
HL_5E81_212
NA
HL_6BOK_2161/LC/53:61No text annotation
Not in a motif group
homologous
HL_6CFJ_108
NA

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6BOK_0011/A/30:32,
1/A/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.2
IL_6BOK_0021/A/44:45,
1/A/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.2
IL_6BOK_0031/A/47:52,
1/A/359:361
No text annotation
Not in a motif group
geometric
IL_4LFB_003
IL_11178.1
IL_6BOK_0041/A/54:56,
1/A/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_6BOK_0051/A/63:66,
1/A/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_6CZR_117
IL_76389.1
IL_6BOK_0061/A/67:69,
1/A/99:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_95997.1
IL_6BOK_0071/A/129A:131,
1/A/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_6BOK_0081/A/132:136,
1/A/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_6BOK_0091/A/148:153,
1/A/168:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_6BOK_0101/A/186A:186C,
1/A/191E:191G
No text annotation
Not in a motif group
homologous
IL_4LFB_010
IL_95997.1
IL_6BOK_0111/A/242:247,
1/A/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_6BOK_0121/A/249:252,
1/A/274:275
No text annotation
Not in a motif group
homologous
IL_5J7L_015
IL_48100.2
IL_6BOK_0131/A/292:293,
1/A/304:308
C-loop
Not in a motif group
homologous
IL_6CZR_125
IL_37712.2
IL_6BOK_0141/A/367:369,
1/A/392:393
Single bulged U
Not in a motif group
geometric
IL_4LFB_014
IL_83039.13
IL_6BOK_0151/A/371:375,
1/A/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_6BOK_0161/A/375:376,
1/A/387:389
Single bulged G
Not in a motif group
homologous
IL_4LFB_016
IL_00225.2
IL_6BOK_0171/A/409:416,
1/A/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_6BOK_0181/A/446:450,
1/A/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4LFB_018
IL_88269.3
IL_6BOK_0191/A/450:455,
1/A/477:483
No text annotation
Not in a motif group
geometric
IL_4LFB_019
IL_11882.1
IL_6BOK_0201/A/504:511,
1/A/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_6BOK_0211/A/515:521,
1/A/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_6BOK_0221/A/569:575,
1/A/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_6BOK_0231/A/580:584,
1/A/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_6BOK_0241/A/594:596,
1/A/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.1
IL_6BOK_0251/A/597:598,
1/A/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_6BOK_0261/A/605:612,
1/A/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_6BOK_0271/A/657:658,
1/A/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.1
IL_6BOK_0281/A/662:666,
1/A/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_6BOK_0291/A/673:678,
1/A/712:717
No text annotation
Not in a motif group
geometric
IL_4LFB_030
IL_04668.1
IL_6BOK_0301/A/683:688,
1/A/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_6BOK_0311/A/774:778,
1/A/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_6BOK_0321/A/779:783,
1/A/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_6BOK_0331/A/887:894,
1/A/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_6BOK_0341/A/922:923,
1/A/1393:1395
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.2
IL_6BOK_0351/A/925:927,
1/A/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_6BOK_0361/A/933:935,
1/A/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_4LFB_037
IL_47078.1
IL_6BOK_0371/A/953:954,
1/A/1226:1228
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_6BOK_0381/A/993:997,
1/A/1044:1045
Minor groove platform
Not in a motif group
geometric
IL_4LFB_039
IL_47078.1
IL_6BOK_0391/A/1008:1010,
1/A/1019:1021
No text annotation
Not in a motif group
geometric
IL_3ICQ_003
IL_51629.2
IL_6BOK_0401/A/1048:1050,
1/A/1208:1209
Single bulged U
Not in a motif group
geometric
IL_4LFB_042
IL_83039.13
IL_6BOK_0411/A/1050:1052,
1/A/1206:1208
No text annotation
Not in a motif group
homologous
IL_4LFB_043
NA
IL_6BOK_0421/A/1052:1056,
1/A/1204:1206
Isolated cWS basepair
Not in a motif group
geometric
IL_4LFB_044
IL_76319.2
IL_6BOK_0431/A/1057:1058,
1/A/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_4LFB_045
IL_93353.1
IL_6BOK_0441/A/1060:1061,
1/A/1195:1197
Single bulged U
Not in a motif group
geometric
IL_6CZR_156
IL_83039.13
IL_6BOK_0451/A/1061:1063,
1/A/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_95997.1
IL_6BOK_0461/A/1124:1128,
1/A/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_6BOK_0471/A/1129:1132,
1/A/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_6BOK_0481/A/1158:1161,
1/A/1175:1181
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_6BOK_0491/A/1247:1253,
1/A/1284:1290
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_6BOK_0501/A/1255:1258,
1/A/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_6BOK_0511/A/1259:1260,
1/A/1274:1276
Not an internal loop
Not in a motif group
geometric
IL_4LFB_053
IL_93353.1
IL_6BOK_0521/A/1260:1262,
1/A/1273:1274
Minor groove platform
Not in a motif group
homologous
IL_4LFB_054
IL_93353.1
IL_6BOK_0531/A/1303:1308,
1/A/1329:1334
No text annotation
Not in a motif group
homologous
IL_4LFB_055
IL_19954.2
IL_6BOK_0541/A/1399:1401,
1/A/1501:1504
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.3
IL_6BOK_0551/A/1401:1405,
1/A/1496:1501
No text annotation
Not in a motif group
IL_6BOK_0561/A/1405:1409,
1/A/1491:1496
No text annotation
Not in a motif group
homologous
IL_4LFB_058
NA
IL_6BOK_0571/A/1412:1414,
1/A/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_6BOK_0581/A/1416:1419,
1/A/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_6BOK_0591/A/1431:1435,
1/A/1466:1469
UAA/GAN variation
Not in a motif group
homologous
IL_4LFB_062
IL_07235.1
IL_6BOK_0601/A/1435:1437,
1/A/1464:1466
No text annotation
Not in a motif group
geometric
IL_4LFB_063
IL_95997.1
IL_6BOK_0611/A/1440:1447,
1/A/1459:1461
Isolated basepair with bulged bases
Not in a motif group
homologous
IL_6CZR_172
IL_92788.2
IL_6BOK_0621/B/24:30,
1/B/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_7RQB_001
IL_66414.6
IL_6BOK_0631/B/36:37,
1/B/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.2
IL_6BOK_0641/B/43:44,
1/B/434:436
Minor groove platform
Not in a motif group
homologous
IL_7RQB_003
IL_42622.2
IL_6BOK_0651/B/81:85,
1/B/97:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_6BOK_0661/B/183:184,
1/B/212:214
Single stack bend
Not in a motif group
homologous
IL_7RQB_005
IL_76488.2
IL_6BOK_0671/B/188:194,
1/B/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_006
IL_04346.7
IL_6BOK_0681/B/239:245,
1/B/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_6BOK_0701/B/273A:273B,
1/B/363F:364
Major groove platform
Not in a motif group
homologous
IL_7RQB_009
IL_27635.1
IL_6BOK_0711/B/273G:280,
1/B/360:363A
No text annotation
Not in a motif group
IL_6BOK_0721/B/280:284,
1/B/357:360
tSH-tHW
Not in a motif group
geometric
IL_7RQB_057
IL_04059.1
IL_6BOK_0731/B/288:290,
1/B/350:353
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_012
IL_38958.7
IL_6BOK_0741/B/293:295,
1/B/343:347
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_6BOK_0751/B/481:484,
1/B/496:509
No text annotation
Not in a motif group
geometric
IL_7RQB_014
IL_60992.6
IL_6BOK_0761/B/564:566,
1/B/575:577
No text annotation
Not in a motif group
homologous
IL_4WF9_017
IL_95997.1
IL_6BOK_0771/B/606:609B,
1/B/618B:622
AAA cross-strand stack
Not in a motif group
homologous
IL_7RQB_016
IL_17136.1
IL_6BOK_0781/B/672:674,
1/B/806:808
No text annotation
Not in a motif group
homologous
IL_5J7L_259
IL_95997.1
IL_6BOK_0791/B/674:678,
1/B/799:806
No text annotation
Not in a motif group
geometric
IL_7RQB_018
IL_17470.6
IL_6BOK_0801/B/697:698,
1/B/763:765
Single bulged A
Not in a motif group
geometric
IL_7RQB_019
IL_37497.2
IL_6BOK_0811/B/702:703,
1/B/728:730
Single bulged G
Not in a motif group
homologous
IL_7RQB_020
IL_00225.2
IL_6BOK_0821/B/703:707,
1/B/724:728
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_6BOK_0831/B/738:741,
1/B/756:758
Major groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_022
IL_05564.2
IL_6BOK_0841/B/775:777,
1/B/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_023
IL_90991.6
IL_6BOK_0851/B/837:838,
1/B/940:942
Single stack bend
Not in a motif group
homologous
IL_7RQB_024
IL_92001.1
IL_6BOK_0861/B/844:846,
1/B/931:934
Intercalated cWW
Not in a motif group
geometric
IL_7RQB_025
IL_52767.2
IL_6BOK_0871/B/846:850,
1/B/928:931
No text annotation
Not in a motif group
homologous
IL_7RQB_026
IL_94165.1
IL_6BOK_0881/B/858:862,
1/B/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7RQB_027
IL_38862.1
IL_6BOK_0891/B/862:863,
1/B/913:915
Minor groove platform
Not in a motif group
homologous
IL_7RQB_028
IL_42622.2
IL_6BOK_0901/B/864:868,
1/B/909:912
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_6BOK_0911/B/870:872,
1/B/905:907
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_030
IL_52767.2
IL_6BOK_0921/B/875:877,
1/B/899:902
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_031
IL_46796.1
IL_6BOK_0931/B/877:879,
1/B/898:899
Minor groove platform
Not in a motif group
geometric
IL_7RQB_032
IL_93353.1
IL_6BOK_0941/B/880:881,
1/B/895:897
Single bulged A
Not in a motif group
homologous
IL_7RQB_033
IL_37497.2
IL_6BOK_0951/B/952:954,
1/B/963:965
No text annotation
Not in a motif group
homologous
IL_7RQB_034
IL_95997.1
IL_6BOK_0961/B/994:996,
1/B/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_6BOK_0971/B/998:1002,
1/B/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_7RQB_036
IL_89002.2
IL_6BOK_0981/B/1004:1011,
1/B/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.7
IL_6BOK_0991/B/1011:1013,
1/B/1149:1150
Single bulged U
Not in a motif group
geometric
IL_7RQB_038
IL_83039.13
IL_6BOK_1001/B/1018:1024,
1/B/1140:1144
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_6BOK_1011/B/1024:1030,
1/B/1124:1140
No text annotation
Not in a motif group
geometric
IL_7RQB_040
IL_50715.1
IL_6BOK_1021/B/1031:1034,
1/B/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_041
IL_82068.2
IL_6BOK_1031/B/1042:1051,
1/B/1108:1113
No text annotation
Not in a motif group
IL_6BOK_1041/B/1055:1087,
1/B/1102:1104
No text annotation
Not in a motif group
IL_6BOK_1051/B/1087:1091,
1/B/1100:1102
Major groove platform with extra cWW
Not in a motif group
geometric
IL_5D8H_003
IL_05564.2
IL_6BOK_1061/B/1196:1198,
1/B/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_045
IL_52767.2
IL_6BOK_1071/B/1202:1206,
1/B/1240:1243
No text annotation
Not in a motif group
homologous
IL_7RQB_046
IL_68574.2
IL_6BOK_1081/B/1208:1215,
1/B/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_6BOK_1091/B/1219:1221,
1/B/1229:1230
Single bulged A
Not in a motif group
homologous
IL_7RQB_048
IL_37497.2
IL_6BOK_1101/B/1262:1269,
1/B/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_049
IL_04346.7
IL_6BOK_1111/B/1319:1323,
1/B/1331:1333
C-loop
Not in a motif group
homologous
IL_7RQB_051
IL_63596.6
IL_6BOK_1121/B/1351:1355,
1/B/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_7RQB_052
IL_89002.2
IL_6BOK_1131/B/1357:1361,
1/B/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_4WF9_052
IL_17136.1
IL_6BOK_1141/B/1415:1416,
1/B/1582:1587
No text annotation
Not in a motif group
homologous
IL_7RQB_054
IL_67474.4
IL_6BOK_1151/B/1417:1421,
1/B/1577:1581
UAA/GAN
Not in a motif group
geometric
IL_4WF9_051
IL_89002.2
IL_6BOK_1161/B/1433:1435,
1/B/1557:1560
Isolated tWW turn
Not in a motif group
homologous
IL_7RQB_056
IL_54997.7
IL_6BOK_1171/B/1437:1440,
1/B/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_04059.1
IL_6BOK_1181/B/1449:1450,
1/B/1461:1462
No text annotation
Not in a motif group
IL_6BOK_1191/B/1450:1451,
1/B/1459:1461
Single bulged A
Not in a motif group
homologous
IL_7RQB_059
IL_37497.2
IL_6BOK_1201/B/1469:1473,
1/B/1520:1523
UAA/GAN
Not in a motif group
homologous
IL_7RQB_060
IL_07235.1
IL_6BOK_1211/B/1481:1483,
1/B/1506:1512
No text annotation
Not in a motif group
IL_6BOK_1221/B/1489:1491,
1/B/1499:1500
Single bulged A
Not in a motif group
homologous
IL_7RQB_062
IL_37497.2
IL_6BOK_1231/B/1526:1530,
1/B/1541:1546B
No text annotation
Not in a motif group
homologous
IL_7RQB_063
IL_02656.1
IL_6BOK_1241/B/1651:1656,
1/B/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_6BOK_1251/B/1663:1665,
1/B/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_7RQB_065
IL_54997.7
IL_6BOK_1261/B/1666:1669,
1/B/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_306
IL_50694.2
IL_6BOK_1271/B/1669:1674,
1/B/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_7A0S_062
IL_82842.2
IL_6BOK_1281/B/1686:1691,
1/B/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_7RQB_068
IL_65969.2
IL_6BOK_1291/B/1770:1771,
1/B/1980:1982
Single bulged A
Not in a motif group
homologous
IL_7RQB_069
IL_37497.2
IL_6BOK_1301/B/1798:1804,
1/B/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_6BOK_1311/B/1837:1840,
1/B/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_6BOK_1321/B/1841:1842,
1/B/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_7RQB_072
IL_16396.2
IL_6BOK_1331/B/1846:1849,
1/B/1893:1894
Minor groove platform
Not in a motif group
homologous
IL_7RQB_073
IL_88739.1
IL_6BOK_1341/B/1851:1855,
1/B/1887:1891
UAA/GAN with extra pair
Not in a motif group
homologous
IL_7RQB_074
IL_90318.1
IL_6BOK_1351/B/1856:1860,
1/B/1882:1886
Triple sheared
Not in a motif group
homologous
IL_7RQB_075
IL_56467.8
IL_6BOK_1361/B/1933:1934,
1/B/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_076
IL_59677.2
IL_6BOK_1371/B/1934:1945,
1/B/1961:1964
No text annotation
Not in a motif group
homologous
IL_7RQB_077
NA
IL_6BOK_1381/B/2050:2052,
1/B/2617:2618
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.1
IL_6BOK_1391/B/2054:2057,
1/B/2611:2615
No text annotation
Not in a motif group
IL_6BOK_1401/B/2067:2069,
1/B/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7A0S_075
IL_83039.13
IL_6BOK_1411/B/2070:2071,
1/B/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_4WF9_081
IL_42622.2
IL_6BOK_1421/B/2081:2083,
1/B/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_082
IL_38958.7
IL_6BOK_1431/B/2085:2087,
1/B/2232:2234
No text annotation
Not in a motif group
homologous
IL_7RQB_083
IL_95997.1
IL_6BOK_1441/B/2107:2120,
1/B/2178:2182
No text annotation
Not in a motif group
IL_6BOK_1451/B/2297:2299,
1/B/2317:2321
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_7RQB_088
IL_38958.7
IL_6BOK_1461/B/2350:2353,
1/B/2364:2367
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.9
IL_6BOK_1471/B/2401:2403,
1/B/2414:2415
Major groove platform
Not in a motif group
homologous
IL_7RQB_090
IL_27635.1
IL_6BOK_1481/B/2453:2454,
1/B/2498:2500
Single stack bend
Not in a motif group
homologous
IL_4WF9_089
IL_76488.2
IL_6BOK_1491/B/2454:2455,
1/B/2496:2498
Major groove platform
Not in a motif group
geometric
IL_4V9F_082
IL_27635.1
IL_6BOK_1501/B/2457:2459,
1/B/2493:2494
Major groove platform
Not in a motif group
geometric
IL_4WF9_091
IL_27635.1
IL_6BOK_1511/B/2459:2461,
1/B/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_7A0S_086
IL_92788.2
IL_6BOK_1521/B/2466:2470,
1/B/2480:2484
Triple sheared
Not in a motif group
homologous
IL_7RQB_095
IL_56467.8
IL_6BOK_1531/B/2507:2508,
1/B/2580:2582
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_6BOK_1541/B/2510:2512,
1/B/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_90933.2
IL_6BOK_1551/B/2512:2513,
1/B/2571:2574
No text annotation
Not in a motif group
homologous
IL_4WF9_096
IL_71530.2
IL_6BOK_1561/B/2522:2523,
1/B/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_6BOK_1571/B/2588:2590,
1/B/2604:2606
No text annotation
Not in a motif group
homologous
IL_7RQB_100
NA
IL_6BOK_1581/B/2591:2592,
1/B/2601:2603
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.2
IL_6BOK_1591/B/2636:2640,
1/B/2774:2782
tSH-tHS-tHW
Not in a motif group
homologous
IL_7RQB_102
IL_04638.1
IL_6BOK_1601/B/2652:2658,
1/B/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_7RQB_103
IL_16458.1
IL_6BOK_1611/B/2680:2684,
1/B/2725:2727
C-loop
Not in a motif group
homologous
IL_7RQB_104
IL_63596.6
IL_6BOK_1621/B/2687:2691,
1/B/2718:2722
No text annotation
Not in a motif group
homologous
IL_7RQB_105
IL_08296.3
IL_6BOK_1631/B/2695:2696,
1/B/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_106
IL_71530.2
IL_6BOK_1641/B/2737:2742,
1/B/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_7RQB_107
IL_49767.5
IL_6BOK_1651/B/2838:2839,
1/B/2878:2880
Single bulged C
Not in a motif group
homologous
IL_7RQB_108
IL_61258.12
IL_6BOK_1661/B/2842:2846,
1/B/2870:2875
No text annotation
Not in a motif group
IL_6BOK_1671/B/2847:2852,
1/B/2865:2869
No text annotation
Not in a motif group
homologous
IL_7RQB_110
IL_83162.5
IL_6BOK_1681/C/17:18,
1/C/65:67
Major groove intercalation
Not in a motif group
homologous
IL_4V9F_101
IL_37497.2
IL_6BOK_1691/C/23:28,
1/C/56:60
No text annotation
Not in a motif group
homologous
IL_7RQB_112
NA
IL_6BOK_1701/C/30:31,
1/C/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4V9F_103
IL_09061.6
IL_6BOK_1711/C/34:38,
1/C/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_7RQB_114
IL_58103.6
IL_6BOK_1721/C/71:79,
1/C/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3
IL_6BOK_1731/DB/30:32,
1/DB/552:553
Single bulged G
Not in a motif group
geometric
IL_4LFB_001
IL_00225.2
IL_6BOK_1741/DB/43:45,
1/DB/396:399
No text annotation
Not in a motif group
geometric
IL_5AOX_001
IL_95997.1
IL_6BOK_1751/DB/47:52,
1/DB/359:361
No text annotation
Not in a motif group
geometric
IL_4LFB_003
IL_11178.1
IL_6BOK_1761/DB/54:56,
1/DB/356:357
Minor groove platform
Not in a motif group
geometric
IL_4V88_388
IL_93353.1
IL_6BOK_1771/DB/63:66,
1/DB/103:104
Multiple bulged bases
Not in a motif group
geometric
IL_6CZR_117
IL_76389.1
IL_6BOK_1781/DB/67:69,
1/DB/99:102
No text annotation
Not in a motif group
geometric
IL_4LFB_006
IL_95997.1
IL_6BOK_1791/DB/129A:131,
1/DB/231:232
Multiple bulged bases
Not in a motif group
geometric
IL_4LFB_007
IL_16396.2
IL_6BOK_1801/DB/132:136,
1/DB/227:230
No text annotation
Not in a motif group
geometric
IL_4LFB_008
IL_58764.3
IL_6BOK_1811/DB/148:153,
1/DB/168:174
tWH-tWH-tHW-tHW
Not in a motif group
geometric
IL_4LFB_009
IL_39753.1
IL_6BOK_1821/DB/186A:186C,
1/DB/191E:191G
No text annotation
Not in a motif group
geometric
IL_4LFB_010
IL_95997.1
IL_6BOK_1831/DB/242:247,
1/DB/277:284
Kink-turn with non-sequential stacking
Not in a motif group
geometric
IL_4LFB_011
IL_45067.2
IL_6BOK_1841/DB/249:252,
1/DB/274:275
No text annotation
Not in a motif group
geometric
IL_5J7L_015
IL_48100.2
IL_6BOK_1851/DB/292:293,
1/DB/304:308
C-loop
Not in a motif group
geometric
IL_6CZR_125
IL_37712.2
IL_6BOK_1861/DB/367:369,
1/DB/392:393
Single bulged U
Not in a motif group
geometric
IL_4LFB_014
IL_83039.13
IL_6BOK_1871/DB/371:375,
1/DB/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_6BOK_1881/DB/375:376,
1/DB/387:389
Single bulged G
Not in a motif group
geometric
IL_4LFB_016
IL_00225.2
IL_6BOK_1891/DB/409:416,
1/DB/427:433
No text annotation
Not in a motif group
geometric
IL_4LFB_017
IL_28026.1
IL_6BOK_1901/DB/446:450,
1/DB/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4LFB_018
IL_88269.3
IL_6BOK_1911/DB/450:455,
1/DB/477:483
No text annotation
Not in a motif group
geometric
IL_4LFB_019
IL_11882.1
IL_6BOK_1921/DB/504:511,
1/DB/540:541
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_4LFB_020
IL_15861.7
IL_6BOK_1931/DB/515:521,
1/DB/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_6BOK_1941/DB/569:575,
1/DB/880:881
No text annotation
Not in a motif group
geometric
IL_4LFB_022
IL_69996.1
IL_6BOK_1951/DB/580:584,
1/DB/757:761
tSH-tHW-tHS
Not in a motif group
geometric
IL_4LFB_023
IL_17136.1
IL_6BOK_1961/DB/594:596,
1/DB/644:645
Major groove platform
Not in a motif group
geometric
IL_4LFB_024
IL_27635.1
IL_6BOK_1971/DB/597:598,
1/DB/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
geometric
IL_4LFB_025
IL_09061.6
IL_6BOK_1981/DB/605:612,
1/DB/628:633
No text annotation
Not in a motif group
geometric
IL_4LFB_026
IL_78349.1
IL_6BOK_1991/DB/657:658,
1/DB/747:749
Major groove platform
Not in a motif group
geometric
IL_4LFB_028
IL_27635.1
IL_6BOK_2001/DB/662:666,
1/DB/740:743
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4LFB_029
IL_71110.1
IL_6BOK_2011/DB/673:678,
1/DB/712:717
No text annotation
Not in a motif group
geometric
IL_4LFB_030
IL_04668.1
IL_6BOK_2021/DB/683:688,
1/DB/699:707
Kink-turn
Not in a motif group
geometric
IL_4LFB_031
IL_37722.1
IL_6BOK_2031/DB/774:778,
1/DB/804:805
Left turn
Not in a motif group
geometric
IL_5J7L_036
IL_29346.1
IL_6BOK_2041/DB/779:783,
1/DB/799:803
tSH-tHW-tHS
Not in a motif group
geometric
IL_5J7L_037
IL_17136.1
IL_6BOK_2051/DB/887:894,
1/DB/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
geometric
IL_5J7L_038
IL_24606.2
IL_6BOK_2061/DB/922:923,
1/DB/1393:1395
Single bulged A
Not in a motif group
geometric
IL_4LFB_035
IL_37497.2
IL_6BOK_2071/DB/925:927,
1/DB/1390:1391
Single bulged G
Not in a motif group
geometric
IL_4LFB_036
IL_00225.2
IL_6BOK_2081/DB/933:935,
1/DB/1380:1384
Minor groove platform
Not in a motif group
geometric
IL_4LFB_037
IL_47078.1
IL_6BOK_2091/DB/953:954,
1/DB/1226:1228
Minor groove platform
Not in a motif group
geometric
IL_4V88_445
IL_42622.2
IL_6BOK_2101/DB/993:997,
1/DB/1044:1045
Minor groove platform
Not in a motif group
geometric
IL_4LFB_039
IL_47078.1
IL_6BOK_2111/DB/1008:1010,
1/DB/1019:1021
No text annotation
Not in a motif group
geometric
IL_3ICQ_003
IL_51629.2
IL_6BOK_2121/DB/1048:1050,
1/DB/1208:1209
Single bulged U
Not in a motif group
geometric
IL_4LFB_042
IL_83039.13
IL_6BOK_2131/DB/1050:1052,
1/DB/1206:1208
No text annotation
Not in a motif group
geometric
IL_4WF9_042
IL_95997.1
IL_6BOK_2141/DB/1052:1056,
1/DB/1204:1206
Isolated cWS basepair
Not in a motif group
geometric
IL_4LFB_044
IL_76319.2
IL_6BOK_2151/DB/1057:1058,
1/DB/1199:1203
Minor groove platform
Not in a motif group
geometric
IL_4LFB_045
IL_93353.1
IL_6BOK_2161/DB/1060:1061,
1/DB/1195:1197
Single bulged U
Not in a motif group
geometric
IL_6CZR_156
IL_83039.13
IL_6BOK_2171/DB/1061:1063,
1/DB/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_95997.1
IL_6BOK_2181/DB/1124:1128,
1/DB/1144:1149
No text annotation
Not in a motif group
geometric
IL_5J7L_051
IL_93211.1
IL_6BOK_2191/DB/1129:1132,
1/DB/1142:1143
Minor groove platform
Not in a motif group
geometric
IL_3MXH_005
IL_15052.1
IL_6BOK_2201/DB/1158:1161,
1/DB/1175:1181
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_6BOK_2211/DB/1247:1253,
1/DB/1284:1290
No text annotation
Not in a motif group
geometric
IL_4LFB_051
IL_09129.1
IL_6BOK_2221/DB/1255:1258,
1/DB/1277:1282
No text annotation
Not in a motif group
geometric
IL_4LFB_052
IL_84205.1
IL_6BOK_2231/DB/1259:1260,
1/DB/1274:1276
Not an internal loop
Not in a motif group
geometric
IL_4LFB_053
IL_93353.1
IL_6BOK_2241/DB/1260:1262,
1/DB/1273:1274
Minor groove platform
Not in a motif group
geometric
IL_4UYK_001
IL_93353.1
IL_6BOK_2251/DB/1303:1308,
1/DB/1329:1334
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_6BOK_2261/DB/1399:1401,
1/DB/1501:1504
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.3
IL_6BOK_2271/DB/1401:1405,
1/DB/1496:1501
No text annotation
Not in a motif group
IL_6BOK_2281/DB/1405:1409,
1/DB/1491:1496
No text annotation
Not in a motif group
IL_6BOK_2291/DB/1412:1414,
1/DB/1486:1488
No text annotation
Not in a motif group
geometric
IL_5J7L_061
IL_95997.1
IL_6BOK_2301/DB/1416:1419,
1/DB/1481:1484
Double sheared
Not in a motif group
geometric
IL_5J7L_062
IL_09705.9
IL_6BOK_2311/DB/1431:1435,
1/DB/1466:1469
UAA/GAN variation
Not in a motif group
geometric
IL_4LFB_062
IL_07235.1
IL_6BOK_2321/DB/1435:1437,
1/DB/1464:1466
No text annotation
Not in a motif group
geometric
IL_4LFB_063
IL_95997.1
IL_6BOK_2331/DB/1440:1447,
1/DB/1459:1461
Isolated basepair with bulged bases
Not in a motif group
geometric
IL_6CZR_172
IL_92788.2
IL_6BOK_2341/EB/24:30,
1/EB/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_7RQB_001
IL_66414.6
IL_6BOK_2351/EB/36:37,
1/EB/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.2
IL_6BOK_2361/EB/43:44,
1/EB/434:436
Minor groove platform
Not in a motif group
homologous
IL_7RQB_003
IL_42622.2
IL_6BOK_2371/EB/81:85,
1/EB/97:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_6BOK_2381/EB/183:184,
1/EB/212:214
Single stack bend
Not in a motif group
homologous
IL_7RQB_005
IL_76488.2
IL_6BOK_2391/EB/188:194,
1/EB/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7RQB_006
IL_04346.7
IL_6BOK_2401/EB/239:245,
1/EB/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_6BOK_2421/EB/273A:273B,
1/EB/363F:364
Major groove platform
Not in a motif group
homologous
IL_7RQB_009
IL_27635.1
IL_6BOK_2431/EB/273G:280,
1/EB/360:363A
No text annotation
Not in a motif group
IL_6BOK_2441/EB/280:284,
1/EB/357:360
tSH-tHW
Not in a motif group
homologous
IL_7RQB_011
IL_04059.1
IL_6BOK_2451/EB/288:290,
1/EB/350:353
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_012
IL_38958.7
IL_6BOK_2461/EB/293:295,
1/EB/343:347
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_6BOK_2471/EB/481:484,
1/EB/496:509
No text annotation
Not in a motif group
geometric
IL_7RQB_014
IL_60992.6
IL_6BOK_2481/EB/564:566,
1/EB/575:577
No text annotation
Not in a motif group
homologous
IL_4WF9_017
IL_95997.1
IL_6BOK_2491/EB/606:609B,
1/EB/618B:622
AAA cross-strand stack
Not in a motif group
homologous
IL_7RQB_016
IL_17136.1
IL_6BOK_2501/EB/672:674,
1/EB/806:808
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_95997.1
IL_6BOK_2511/EB/674:678,
1/EB/799:806
No text annotation
Not in a motif group
homologous
IL_7RQB_018
IL_17470.6
IL_6BOK_2521/EB/697:698,
1/EB/763:765
Single bulged A
Not in a motif group
homologous
IL_7RQB_019
IL_37497.2
IL_6BOK_2531/EB/702:703,
1/EB/728:730
Single bulged G
Not in a motif group
geometric
IL_7RQB_020
IL_00225.2
IL_6BOK_2541/EB/703:707,
1/EB/724:728
Triple sheared
Not in a motif group
homologous
IL_7RQB_021
IL_56467.8
IL_6BOK_2551/EB/738:741,
1/EB/756:758
Major groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_022
IL_05564.2
IL_6BOK_2561/EB/775:777,
1/EB/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_023
IL_90991.6
IL_6BOK_2571/EB/837:838,
1/EB/940:942
Single stack bend
Not in a motif group
homologous
IL_7RQB_024
IL_92001.1
IL_6BOK_2581/EB/844:846,
1/EB/931:934
Intercalated cWW
Not in a motif group
homologous
IL_7RQB_025
IL_52767.2
IL_6BOK_2591/EB/846:850,
1/EB/928:931
No text annotation
Not in a motif group
geometric
IL_7RQB_026
IL_94165.1
IL_6BOK_2601/EB/858:862,
1/EB/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7RQB_027
IL_38862.1
IL_6BOK_2611/EB/862:863,
1/EB/913:915
Minor groove platform
Not in a motif group
homologous
IL_7RQB_028
IL_42622.2
IL_6BOK_2621/EB/864:868,
1/EB/909:912
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_6BOK_2631/EB/870:872,
1/EB/905:907
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_030
IL_52767.2
IL_6BOK_2641/EB/875:877,
1/EB/899:902
Minor groove platform with extra cWW
Not in a motif group
geometric
IL_7RQB_031
IL_46796.1
IL_6BOK_2651/EB/877:879,
1/EB/898:899
Minor groove platform
Not in a motif group
homologous
IL_7RQB_032
IL_93353.1
IL_6BOK_2661/EB/880:881,
1/EB/895:897
Single bulged A
Not in a motif group
homologous
IL_7RQB_033
IL_37497.2
IL_6BOK_2671/EB/952:954,
1/EB/963:965
No text annotation
Not in a motif group
homologous
IL_7RQB_034
IL_95997.1
IL_6BOK_2681/EB/994:996,
1/EB/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_6BOK_2691/EB/998:1002,
1/EB/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_7RQB_036
IL_89002.2
IL_6BOK_2701/EB/1004:1011,
1/EB/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.7
IL_6BOK_2711/EB/1011:1013,
1/EB/1149:1150
Single bulged U
Not in a motif group
geometric
IL_7RQB_038
IL_83039.13
IL_6BOK_2721/EB/1018:1024,
1/EB/1140:1144
No text annotation
Not in a motif group
homologous
IL_4WF9_039
IL_57188.3
IL_6BOK_2731/EB/1024:1030,
1/EB/1124:1140
No text annotation
Not in a motif group
geometric
IL_7RQB_040
IL_50715.1
IL_6BOK_2741/EB/1031:1034,
1/EB/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_041
IL_82068.2
IL_6BOK_2751/EB/1042:1051,
1/EB/1108:1113
No text annotation
Not in a motif group
IL_6BOK_2761/EB/1055:1087,
1/EB/1102:1104
No text annotation
Not in a motif group
IL_6BOK_2771/EB/1087:1091,
1/EB/1100:1102
Major groove platform with extra cWW
Not in a motif group
geometric
IL_5D8H_003
IL_05564.2
IL_6BOK_2781/EB/1196:1198,
1/EB/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_045
IL_52767.2
IL_6BOK_2791/EB/1202:1206,
1/EB/1240:1243
No text annotation
Not in a motif group
homologous
IL_7RQB_046
IL_68574.2
IL_6BOK_2801/EB/1208:1215,
1/EB/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_6BOK_2811/EB/1219:1221,
1/EB/1229:1230
Single bulged A
Not in a motif group
homologous
IL_7RQB_048
IL_37497.2
IL_6BOK_2821/EB/1262:1269,
1/EB/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_049
IL_04346.7
IL_6BOK_2831/EB/1319:1323,
1/EB/1331:1333
C-loop
Not in a motif group
homologous
IL_7RQB_051
IL_63596.6
IL_6BOK_2841/EB/1351:1355,
1/EB/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_7RQB_052
IL_89002.2
IL_6BOK_2851/EB/1357:1361,
1/EB/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_4WF9_052
IL_17136.1
IL_6BOK_2861/EB/1415:1416,
1/EB/1582:1587
No text annotation
Not in a motif group
homologous
IL_7RQB_054
IL_67474.4
IL_6BOK_2871/EB/1417:1421,
1/EB/1577:1581
UAA/GAN
Not in a motif group
geometric
IL_4WF9_051
IL_89002.2
IL_6BOK_2881/EB/1433:1435,
1/EB/1557:1560
Isolated tWW turn
Not in a motif group
homologous
IL_7RQB_056
IL_54997.7
IL_6BOK_2891/EB/1437:1440,
1/EB/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_04059.1
IL_6BOK_2901/EB/1449:1450,
1/EB/1461:1462
No text annotation
Not in a motif group
IL_6BOK_2911/EB/1450:1451,
1/EB/1459:1461
Single bulged A
Not in a motif group
geometric
IL_7RQB_059
IL_37497.2
IL_6BOK_2921/EB/1469:1473,
1/EB/1520:1523
UAA/GAN
Not in a motif group
homologous
IL_7RQB_060
IL_07235.1
IL_6BOK_2931/EB/1481:1483,
1/EB/1506:1512
No text annotation
Not in a motif group
IL_6BOK_2941/EB/1489:1491,
1/EB/1499:1500
Single bulged A
Not in a motif group
homologous
IL_7RQB_062
IL_37497.2
IL_6BOK_2951/EB/1526:1530,
1/EB/1541:1546B
No text annotation
Not in a motif group
homologous
IL_7RQB_063
IL_02656.1
IL_6BOK_2961/EB/1651:1656,
1/EB/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_6BOK_2971/EB/1663:1665,
1/EB/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_7RQB_065
IL_54997.7
IL_6BOK_2981/EB/1666:1669,
1/EB/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_306
IL_50694.2
IL_6BOK_2991/EB/1669:1674,
1/EB/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_7A0S_062
IL_82842.2
IL_6BOK_3001/EB/1686:1691,
1/EB/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_7RQB_068
IL_65969.2
IL_6BOK_3011/EB/1770:1771,
1/EB/1980:1982
Single bulged A
Not in a motif group
homologous
IL_7RQB_069
IL_37497.2
IL_6BOK_3021/EB/1798:1804,
1/EB/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_6BOK_3031/EB/1837:1840,
1/EB/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_6BOK_3041/EB/1841:1842,
1/EB/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_7RQB_072
IL_16396.2
IL_6BOK_3051/EB/1846:1849,
1/EB/1893:1894
Minor groove platform
Not in a motif group
homologous
IL_7RQB_073
IL_88739.1
IL_6BOK_3061/EB/1851:1855,
1/EB/1887:1891
UAA/GAN with extra pair
Not in a motif group
homologous
IL_7RQB_074
IL_90318.1
IL_6BOK_3071/EB/1856:1860,
1/EB/1882:1886
Triple sheared
Not in a motif group
homologous
IL_7RQB_075
IL_56467.8
IL_6BOK_3081/EB/1933:1934,
1/EB/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_076
IL_59677.2
IL_6BOK_3091/EB/1934:1945,
1/EB/1961:1964
No text annotation
Not in a motif group
homologous
IL_7RQB_077
NA
IL_6BOK_3101/EB/2050:2052,
1/EB/2617:2618
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.1
IL_6BOK_3111/EB/2054:2057,
1/EB/2611:2615
No text annotation
Not in a motif group
IL_6BOK_3121/EB/2067:2069,
1/EB/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7A0S_075
IL_83039.13
IL_6BOK_3131/EB/2070:2071,
1/EB/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_4WF9_081
IL_42622.2
IL_6BOK_3141/EB/2081:2083,
1/EB/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_082
IL_38958.7
IL_6BOK_3151/EB/2085:2087,
1/EB/2232:2234
No text annotation
Not in a motif group
homologous
IL_7RQB_083
IL_95997.1
IL_6BOK_3161/EB/2107:2120,
1/EB/2178:2182
No text annotation
Not in a motif group
IL_6BOK_3171/EB/2297:2299,
1/EB/2317:2321
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_088
IL_38958.7
IL_6BOK_3181/EB/2350:2353,
1/EB/2364:2367
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.9
IL_6BOK_3191/EB/2401:2403,
1/EB/2414:2415
Major groove platform
Not in a motif group
homologous
IL_7RQB_090
IL_27635.1
IL_6BOK_3201/EB/2453:2454,
1/EB/2498:2500
Single stack bend
Not in a motif group
homologous
IL_4WF9_089
IL_76488.2
IL_6BOK_3211/EB/2454:2455,
1/EB/2496:2498
Major groove platform
Not in a motif group
geometric
IL_4V9F_082
IL_27635.1
IL_6BOK_3221/EB/2457:2459,
1/EB/2493:2494
Major groove platform
Not in a motif group
homologous
IL_4WF9_091
IL_27635.1
IL_6BOK_3231/EB/2459:2461,
1/EB/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_7A0S_086
IL_92788.2
IL_6BOK_3241/EB/2466:2470,
1/EB/2480:2484
Triple sheared
Not in a motif group
homologous
IL_7RQB_095
IL_56467.8
IL_6BOK_3251/EB/2507:2508,
1/EB/2580:2582
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_6BOK_3261/EB/2510:2512,
1/EB/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_90933.2
IL_6BOK_3271/EB/2512:2513,
1/EB/2571:2574
No text annotation
Not in a motif group
homologous
IL_5J7L_341
IL_71530.2
IL_6BOK_3281/EB/2522:2523,
1/EB/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_6BOK_3291/EB/2588:2590,
1/EB/2604:2606
No text annotation
Not in a motif group
homologous
IL_7RQB_100
NA
IL_6BOK_3301/EB/2591:2592,
1/EB/2601:2603
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.2
IL_6BOK_3311/EB/2636:2640,
1/EB/2774:2782
tSH-tHS-tHW
Not in a motif group
homologous
IL_7RQB_102
IL_04638.1
IL_6BOK_3321/EB/2652:2658,
1/EB/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7RQB_103
IL_16458.1
IL_6BOK_3331/EB/2680:2684,
1/EB/2725:2727
C-loop
Not in a motif group
homologous
IL_7RQB_104
IL_63596.6
IL_6BOK_3341/EB/2687:2691,
1/EB/2718:2722
No text annotation
Not in a motif group
homologous
IL_7RQB_105
IL_08296.3
IL_6BOK_3351/EB/2695:2696,
1/EB/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_106
IL_71530.2
IL_6BOK_3361/EB/2737:2742,
1/EB/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_7RQB_107
IL_49767.5
IL_6BOK_3371/EB/2838:2839,
1/EB/2878:2880
Single bulged C
Not in a motif group
homologous
IL_7RQB_108
IL_61258.12
IL_6BOK_3381/EB/2843:2846,
1/EB/2870:2874
No text annotation
Not in a motif group
homologous
IL_7RQB_109
IL_58764.3
IL_6BOK_3391/EB/2847:2852,
1/EB/2865:2869
No text annotation
Not in a motif group
homologous
IL_7RQB_110
IL_83162.5
IL_6BOK_3401/FB/17:18,
1/FB/65:67
Major groove intercalation
Not in a motif group
homologous
IL_4V9F_101
IL_37497.2
IL_6BOK_3411/FB/23:28,
1/FB/56:60
No text annotation
Not in a motif group
homologous
IL_7RQB_112
NA
IL_6BOK_3421/FB/30:31,
1/FB/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4V9F_103
IL_09061.6
IL_6BOK_3431/FB/34:38,
1/FB/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_7RQB_114
IL_58103.6
IL_6BOK_3441/FB/71:79,
1/FB/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3

Problematic loops

#loop idProblemSequence
IL_6BOK_069No text annotation
IL_6BOK_241No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6BOK_0011/A/46:47,
1/A/361:367,
1/A/393:395
No text annotation
Not in a motif group
homologous
J3_5J7L_001
NA
J3_6BOK_0021/A/586:588,
1/A/651:655,
1/A/751:755
No text annotation
Not in a motif group
J3_6BOK_0031/A/672:673,
1/A/717:725,
1/A/732:734
No text annotation
Not in a motif group
homologous
J3_5J7L_003
NA
J3_6BOK_0041/A/826:829,
1/A/857:861,
1/A/868:874
No text annotation
Not in a motif group
homologous
J3_4LFB_001
NA
J3_6BOK_0051/A/936:939,
1/A/1344:1350,
1/A/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_6BOK_0061/A/943:946,
1/A/1235:1237,
1/A/1337:1340
No text annotation
Not in a motif group
homologous
J3_5J7L_005
NA
J3_6BOK_0071/A/955:962,
1/A/973:984,
1/A/1221:1225
No text annotation
Not in a motif group
J3_6BOK_0081/A/990:993,
1/A/1045:1047,
1/A/1210:1215
No text annotation
Not in a motif group
homologous
J3_4LFB_005
NA
J3_6BOK_0091/A/1063:1068,
1/A/1107:1113,
1/A/1187:1193
No text annotation
Not in a motif group
J3_6BOK_0101/A/1073:1074,
1/A/1083:1087,
1/A/1098:1102
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_6BOK_0111/A/1116:1118,
1/A/1155:1158,
1/A/1181:1184
No text annotation
Not in a motif group
homologous
J3_4LFB_008
NA
J3_6BOK_0121/A/1237:1241,
1/A/1296:1303,
1/A/1334:1337
No text annotation
Not in a motif group
J3_6BOK_0131/B/30:31,
1/B/474:481,
1/B/509:510
No text annotation
Not in a motif group
J3_6BOK_0141/B/56:57,
1/B/70:76,
1/B/110:114
No text annotation
Not in a motif group
homologous
J3_7RQB_002
NA
J3_6BOK_0151/B/269:270D,
1/B/270X:271,
1/B/366:370
No text annotation
Not in a motif group
J3_6BOK_0161/B/683:689,
1/B/773:775,
1/B/791:794
No text annotation
Not in a motif group
homologous
J3_7RQB_004
NA
J3_6BOK_0171/B/698:700,
1/B/732:736,
1/B/760:763
No text annotation
Not in a motif group
homologous
J3_7RQB_005
NA
J3_6BOK_0181/B/1298:1303,
1/B/1625:1627,
1/B/1639:1642
No text annotation
Not in a motif group
homologous
J3_7RQB_007
NA
J3_6BOK_0191/B/1306:1309,
1/B/1605:1611,
1/B/1620:1622
No text annotation
Not in a motif group
homologous
J3_7RQB_008
NA
J3_6BOK_0201/B/1344:1350,
1/B/1381:1385,
1/B/1402:1403
No text annotation
Not in a motif group
homologous
J3_7RQB_009
NA
J3_6BOK_0211/B/2091:2093,
1/B/2196:2205,
1/B/2219:2228
No text annotation
Not in a motif group
homologous
J3_7RQB_010
NA
J3_6BOK_0221/B/2295:2297,
1/B/2321:2323,
1/B/2332:2337
No text annotation
Not in a motif group
homologous
J3_7RQB_011
NA
J3_6BOK_0231/B/2517:2520,
1/B/2545:2547,
1/B/2561:2567
No text annotation
Not in a motif group
homologous
J3_7RQB_012
NA
J3_6BOK_0241/B/2814:2815,
1/B/2831:2836,
1/B/2882:2886
No text annotation
Not in a motif group
J3_6BOK_0251/C/11:16,
1/C/68:69,
1/C/107:109
No text annotation
Not in a motif group
homologous
J3_7RQB_015
NA
J3_6BOK_0261/DB/46:47,
1/DB/361:367,
1/DB/393:395
No text annotation
Not in a motif group
homologous
J3_5J7L_001
NA
J3_6BOK_0271/DB/586:588,
1/DB/651:655,
1/DB/751:755
No text annotation
Not in a motif group
J3_6BOK_0281/DB/672:673,
1/DB/717:725,
1/DB/732:734
No text annotation
Not in a motif group
homologous
J3_5J7L_003
NA
J3_6BOK_0291/DB/826:829,
1/DB/857:861,
1/DB/868:874
No text annotation
Not in a motif group
homologous
J3_4LFB_001
NA
J3_6BOK_0301/DB/936:939,
1/DB/1344:1350,
1/DB/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_6BOK_0311/DB/943:946,
1/DB/1235:1237,
1/DB/1337:1340
No text annotation
Not in a motif group
J3_6BOK_0321/DB/955:962,
1/DB/973:984,
1/DB/1221:1225
No text annotation
Not in a motif group
J3_6BOK_0331/DB/990:993,
1/DB/1045:1047,
1/DB/1210:1215
No text annotation
Not in a motif group
homologous
J3_4LFB_005
NA
J3_6BOK_0341/DB/1063:1068,
1/DB/1107:1113,
1/DB/1187:1193
No text annotation
Not in a motif group
J3_6BOK_0351/DB/1073:1074,
1/DB/1083:1087,
1/DB/1098:1102
No text annotation
Not in a motif group
homologous
J3_6CZR_024
NA
J3_6BOK_0361/DB/1116:1118,
1/DB/1155:1158,
1/DB/1181:1184
No text annotation
Not in a motif group
homologous
J3_4LFB_008
NA
J3_6BOK_0371/DB/1237:1241,
1/DB/1296:1303,
1/DB/1334:1337
No text annotation
Not in a motif group
homologous
J3_4LFB_009
NA
J3_6BOK_0381/EB/30:31,
1/EB/474:481,
1/EB/509:510
No text annotation
Not in a motif group
homologous
J3_7RQB_001
NA
J3_6BOK_0391/EB/56:57,
1/EB/70:76,
1/EB/110:114
No text annotation
Not in a motif group
homologous
J3_7RQB_002
NA
J3_6BOK_0401/EB/269:270D,
1/EB/270X:271,
1/EB/366:370
No text annotation
Not in a motif group
J3_6BOK_0411/EB/683:689,
1/EB/773:775,
1/EB/791:794
No text annotation
Not in a motif group
J3_6BOK_0421/EB/698:700,
1/EB/732:736,
1/EB/760:763
No text annotation
Not in a motif group
J3_6BOK_0431/EB/1298:1303,
1/EB/1625:1627,
1/EB/1639:1642
No text annotation
Not in a motif group
homologous
J3_7RQB_007
NA
J3_6BOK_0441/EB/1306:1309,
1/EB/1605:1611,
1/EB/1620:1622
No text annotation
Not in a motif group
homologous
J3_7RQB_008
NA
J3_6BOK_0451/EB/1344:1350,
1/EB/1381:1385,
1/EB/1402:1403
No text annotation
Not in a motif group
homologous
J3_7RQB_009
NA
J3_6BOK_0461/EB/2091:2093,
1/EB/2196:2205,
1/EB/2219:2228
No text annotation
Not in a motif group
homologous
J3_7RQB_010
NA
J3_6BOK_0471/EB/2295:2297,
1/EB/2321:2323,
1/EB/2332:2337
No text annotation
Not in a motif group
J3_6BOK_0481/EB/2517:2520,
1/EB/2545:2547,
1/EB/2561:2567
No text annotation
Not in a motif group
homologous
J3_7RQB_012
NA
J3_6BOK_0491/EB/2814:2815,
1/EB/2831:2836,
1/EB/2882:2886
No text annotation
Not in a motif group
J3_6BOK_0501/FB/11:16,
1/FB/68:69,
1/FB/107:109
No text annotation
Not in a motif group
homologous
J3_7RQB_015
NA

Problematic loops

No problematic loops


Coloring options:
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