4V4J Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/2/11:24 | NA | NA | ||
1/2/31:39 | NA | NA | ||
1/2/53:61 | NA | NA | ||
1/w/59:68 | homologous HL_7RQB_001 | NA HL_29414.1* | ||
1/w/87:95 | homologous HL_7RQB_002 | NA HL_17926.5* | ||
1/w/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
1/w/137B:141B | NA | NA | ||
1/w/155:171 | homologous HL_7RQB_005 | NA | ||
1/w/194:201 | homologous HL_7RQB_006 | NA HL_23481.5* | ||
1/w/225:230 | homologous HL_7RQB_007 | NA HL_06569.2* | ||
1/w/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
1/w/270K:270Q | NA | NA | ||
1/w/305:312 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
1/w/319:323 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
1/w/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
1/w/382:392 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
1/w/410:417 | NA | NA | ||
1/w/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
1/w/487:493 | NA | NA | ||
1/w/544:549 | GNRA geometric HL_5TBW_036 | NA HL_43074.18* | ||
1/w/564:577 | NA | NA | ||
1/w/611:617 | Other HL geometric HL_1P6V_001 | NA HL_79299.11* | ||
1/w/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
1/w/641:647 | homologous HL_7RQB_021 | NA HL_02361.6* | ||
1/w/712:719 | homologous HL_7RQB_022 | NA HL_93727.5* | ||
1/w/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
1/w/779:785 | NA | NA | ||
1/w/825:832 | Other HL geometric HL_1P6V_001 | NA HL_79299.11* | ||
1/w/884:892 | NA | NA | ||
1/w/955:962 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
1/w/978:985 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
1/w/1065:1073 | geometric HL_4YAZ_004 | NA HL_57052.3* | ||
1/w/1092:1099 | homologous HL_7RQB_030 | NA | ||
1/w/1171:1178 | geometric HL_7RQB_043 | NA HL_49638.1* | ||
1/w/1222:1227 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
1/w/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
1/w/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
1/w/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
1/w/1389:1398 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
1/w/1450:1461 | Other HL geometric HL_5J7L_200 | NA HL_96776.3* | ||
1/w/1492:1498 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
1/w/1533:1538 | geometric HL_4YAZ_004 | NA HL_57052.3* | ||
1/w/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
1/w/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
1/w/1630B:1635 | homologous HL_7RQB_041 | NA HL_86880.5* | ||
1/w/1691:1696 | UNCG geometric HL_4PMI_004 | NA HL_79299.11* | ||
1/w/1727:1733 | NA | NA | ||
1/w/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
1/w/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
1/w/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
1/w/1863:1879 | geometric HL_7A0S_056 | NA HL_93727.5* | ||
1/w/1910:1920 | geometric HL_5TBW_049 | NA HL_98248.1* | ||
1/w/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
1/w/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
1/w/2143:2148 | geometric HL_4V88_198 | NA HL_30541.1* | ||
1/w/2209:2215 | geometric HL_5NFV_001 | NA HL_58912.1* | ||
1/w/2248:2256 | homologous HL_7RQB_053 | NA | ||
1/w/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
1/w/2304:2312 | NA | NA | ||
1/w/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
1/w/2355:2362 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
1/w/2374:2379 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
1/w/2404:2413 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
1/w/2471:2479 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
1/w/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
1/w/2551:2557 | homologous HL_7RQB_062 | NA | ||
1/w/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
1/w/2658:2663 | geometric HL_3OXE_002 | NA HL_32527.3* | ||
1/w/2701:2706 | homologous HL_7RQB_065 | NA HL_31583.1* | ||
1/w/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
1/w/2794:2802 | Other HL geometric HL_1P6V_001 | NA HL_79299.11* | ||
1/w/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
1/w/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
1/x/38:44 | geometric HL_4V9F_011 | NA HL_98557.5* | ||
1/x/86:90 | GNRA homologous HL_5TBW_186 | NA HL_43074.18* | ||
1/y/12:22 | NA | NA | ||
1/y/81:88 | NA | NA | ||
1/y/102C:103B | NA | NA | ||
1/y/158:163 | NA | NA | ||
1/y/186G:191A | NA | NA | ||
1/y/201:216 | NA | NA | ||
1/y/259:267 | NA | NA | ||
1/y/296:301 | NA | NA | ||
1/y/320:333 | NA | NA | ||
1/y/342:347 | NA | NA | ||
1/y/379:384 | NA | NA | ||
1/y/419:424 | NA | NA | ||
1/y/458:474 | NA | NA | ||
1/y/521:528 | NA | NA | ||
1/y/617:623 | NA | NA | ||
1/y/689:698 | NA | NA | ||
1/y/726:731 | NA | NA | ||
1/y/786:796 | NA | NA | ||
1/y/838:848 | NA | NA | ||
1/y/897:902 | NA | NA | ||
1/y/963:972 | NA | NA | ||
1/y/1012:1017 | NA | NA | ||
1/y/1027:1034 | NA | NA | ||
1/y/1076:1081 | NA | NA | ||
1/y/1089:1096 | NA | NA | ||
1/y/1134:1140 | NA | NA | ||
1/y/1165:1171 | NA | NA | ||
1/y/1265:1270 | NA | NA | ||
1/y/1314:1323 | NA | NA | ||
1/y/1356:1366 | NA | NA | ||
1/y/1449:1454 | NA | NA | ||
1/y/1515:1520 | NA | NA | ||
1/z/13:22 | NA | NA | ||
1/z/31:39 | NA | NA | ||
1/z/53:61 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4V4J_095 | NA |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/w/24:30, 1/w/510:516 | Triple sheared with non-canonical cWW geometric IL_5TBW_015 | NA IL_66414.5* | ||
1/w/36:37, 1/w/442:444 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
1/w/43:44, 1/w/434:436 | Minor groove platform homologous IL_7RQB_003 | NA IL_06437.11* | ||
1/w/81:85, 1/w/97:105 | NA | NA | ||
1/w/183:184, 1/w/212:214 | Single stack bend homologous IL_7RQB_005 | NA IL_04038.4* | ||
1/w/188:194, 1/w/201:208 | 8x7 Sarcin-Ricin; G-bulge geometric IL_7RQB_006 | NA IL_04346.5* | ||
1/w/239:245, 1/w/253:258 | 7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007 | NA IL_35110.5* | ||
1/w/273A:273C, 1/w/363E:364 | NA | NA | ||
1/w/273G:278, 1/w/362:363A | NA | NA | ||
1/w/280:284, 1/w/356:360 | tSH-tHW-tHS geometric IL_6CZR_145 | NA IL_39521.5* | ||
1/w/288:290, 1/w/350:352 | geometric IL_1RPU_001 | NA IL_01312.13* | ||
1/w/292:295, 1/w/343:348 | NA | NA | ||
1/w/481:484, 1/w/496:509 | geometric IL_7A0S_009 | NA IL_60992.5* | ||
1/w/605:609B, 1/w/618B:623 | NA | NA | ||
1/w/672:674, 1/w/806:808 | homologous IL_7RQB_017 | NA IL_01312.13* | ||
1/w/674:678, 1/w/799:806 | tHW-tHW cross-strand stack geometric IL_4WF9_021 | NA IL_17470.5* | ||
1/w/697:698, 1/w/763:765 | Single bulged A homologous IL_7RQB_019 | NA IL_80007.16* | ||
1/w/702:703, 1/w/728:730 | Single bulged G geometric IL_4WF9_023 | NA IL_59137.10* | ||
1/w/703:707, 1/w/724:728 | Triple sheared homologous IL_7RQB_021 | NA IL_56467.6* | ||
1/w/738:741, 1/w/756:758 | Major groove platform with extra cWW homologous IL_7RQB_022 | NA IL_95485.6* | ||
1/w/775:778, 1/w/786:791 | NA | NA | ||
1/w/837:838, 1/w/940:942 | Single stack bend homologous IL_7RQB_024 | NA IL_04038.4* | ||
1/w/844:846, 1/w/931:934 | Intercalated cWW geometric IL_7RQB_025 | NA IL_01312.13* | ||
1/w/846:850, 1/w/928:931 | homologous IL_7RQB_026 | NA IL_94165.1* | ||
1/w/858:862, 1/w/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge geometric IL_7RQB_027 | NA IL_83354.1* | ||
1/w/862:863, 1/w/913:915 | Minor groove platform homologous IL_7RQB_028 | NA IL_06437.11* | ||
1/w/864:868, 1/w/909:912 | NA | NA | ||
1/w/875:877, 1/w/900:902 | Isolated tHS basepair with bulges geometric IL_1L9A_004 | NA IL_38958.6* | ||
1/w/877:879, 1/w/898:900 | NA | NA | ||
1/w/880:881, 1/w/895:897 | NA | NA | ||
1/w/952:954, 1/w/963:965 | homologous IL_7RQB_034 | NA IL_01312.13* | ||
1/w/994:996, 1/w/1159:1160 | Single bulged C homologous IL_7RQB_035 | NA IL_61258.10* | ||
1/w/998:1002, 1/w/1153:1157 | UAA/GAN homologous IL_7RQB_036 | NA IL_53523.5* | ||
1/w/1004:1011, 1/w/1150:1151 | Multiple bulged bases geometric IL_1R3E_001 | NA IL_13730.12* | ||
1/w/1011:1013, 1/w/1149:1150 | Single bulged U homologous IL_7RQB_038 | NA IL_83039.11* | ||
1/w/1018:1024, 1/w/1140:1144 | geometric IL_4WF9_039 | NA IL_57188.3* | ||
1/w/1024:1030, 1/w/1124:1140 | homologous IL_7RQB_040 | NA IL_55786.1* | ||
1/w/1031:1034, 1/w/1121:1123 | Isolated non-canonical cWW with bulges homologous IL_7RQB_041 | NA IL_55456.1* | ||
1/w/1043:1051, 1/w/1108:1112 | Kink-turn homologous IL_7RQB_042 | NA IL_90538.3* | ||
1/w/1058:1062, 1/w/1076:1080 | NA | NA | ||
1/w/1087:1091, 1/w/1100:1102 | Major groove platform with extra cWW geometric IL_5TBW_056 | NA IL_95485.6* | ||
1/w/1197:1198, 1/w/1247:1249 | Single bulged G geometric IL_5J7L_001 | NA IL_59137.10* | ||
1/w/1202:1206, 1/w/1240:1243 | homologous IL_7RQB_046 | NA IL_68574.2* | ||
1/w/1208:1215, 1/w/1234:1238 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
1/w/1219:1221, 1/w/1229:1230 | Single bulged A homologous IL_7RQB_048 | NA IL_80007.16* | ||
1/w/1262:1269, 1/w/2011:2017 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049 | NA IL_04346.5* | ||
1/w/1310:1313, 1/w/1603:1604 | Major groove platform; stack outside cWW homologous IL_7RQB_050 | NA IL_70995.6* | ||
1/w/1319:1323, 1/w/1331:1333 | C-loop homologous IL_7RQB_051 | NA IL_63596.4* | ||
1/w/1351:1355, 1/w/1376:1380 | UAA/GAN homologous IL_7RQB_052 | NA IL_53523.5* | ||
1/w/1357:1361, 1/w/1370:1374 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
1/w/1415:1416, 1/w/1582:1587 | homologous IL_7RQB_054 | NA IL_67474.3* | ||
1/w/1417:1421, 1/w/1577:1581 | UAA/GAN homologous IL_7RQB_055 | NA IL_53523.5* | ||
1/w/1432:1435, 1/w/1557:1561 | NA | NA | ||
1/w/1437:1440, 1/w/1551:1555 | tSH-tHW homologous IL_7RQB_057 | NA IL_08757.3* | ||
1/w/1448:1449, 1/w/1462:1463 | NA | NA | ||
1/w/1469:1473, 1/w/1520:1523 | UAA/GAN homologous IL_7RQB_060 | NA IL_53523.5* | ||
1/w/1481:1483, 1/w/1506:1512 | NA | NA | ||
1/w/1489:1491, 1/w/1499:1500 | Single bulged A homologous IL_7RQB_062 | NA IL_40508.4* | ||
1/w/1526:1527, 1/w/1544:1546B | NA | NA | ||
1/w/1527:1531, 1/w/1540:1544 | NA | NA | ||
1/w/1651:1656, 1/w/2004:2006 | homologous IL_7RQB_064 | NA IL_12566.2* | ||
1/w/1663:1665, 1/w/1995:1997 | Isolated tWW turn homologous IL_7RQB_065 | NA IL_54997.5* | ||
1/w/1666:1669, 1/w/1993:1994 | Major groove platform; stack outside cWW geometric IL_5J7L_306 | NA IL_80663.10* | ||
1/w/1669:1674, 1/w/1990:1993 | Intercalated tWH homologous IL_7RQB_067 | NA IL_01312.13* | ||
1/w/1686:1691, 1/w/1696:1702 | tSH-tSH-tHH-tHS homologous IL_7RQB_068 | NA IL_66584.5* | ||
1/w/1770:1771, 1/w/1980:1982 | Single bulged A homologous IL_7RQB_069 | NA IL_80007.16* | ||
1/w/1798:1804, 1/w/1813:1821 | Kink-turn related homologous IL_7RQB_070 | NA IL_17069.3* | ||
1/w/1837:1840, 1/w/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071 | NA IL_31836.1* | ||
1/w/1841:1842, 1/w/1898:1901 | Multiple bulged bases geometric IL_3IWN_004 | NA IL_13730.12* | ||
1/w/1846:1849, 1/w/1893:1894 | Minor groove platform homologous IL_7RQB_073 | NA IL_06437.11* | ||
1/w/1851:1855, 1/w/1887:1891 | UAA/GAN with extra pair homologous IL_7RQB_074 | NA IL_34907.2* | ||
1/w/1856:1860, 1/w/1882:1886 | Triple sheared homologous IL_7RQB_075 | NA IL_56467.6* | ||
1/w/1933:1934, 1/w/1964:1967 | Multiple bulged bases homologous IL_7RQB_076 | NA IL_69632.1* | ||
1/w/1934:1945, 1/w/1961:1964 | geometric IL_4WF9_077 | NA IL_70285.1* | ||
1/w/2050:2052, 1/w/2617:2618 | Major groove platform homologous IL_7RQB_078 | NA IL_80663.10* | ||
1/w/2054:2056, 1/w/2612:2615 | NA | NA | ||
1/w/2067:2069, 1/w/2442:2443 | Single bulged U homologous IL_7RQB_080 | NA IL_83039.11* | ||
1/w/2070:2071, 1/w/2438:2441 | Minor groove platform homologous IL_7RQB_081 | NA IL_06437.11* | ||
1/w/2081:2083, 1/w/2236:2239 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | NA IL_38958.6* | ||
1/w/2085:2087, 1/w/2232:2234 | homologous IL_7RQB_083 | NA IL_01312.13* | ||
1/w/2108:2110, 1/w/2179:2181 | geometric IL_4KZD_003 | NA IL_01312.13* | ||
1/w/2110:2120, 1/w/2178:2179 | NA | NA | ||
1/w/2124:2127, 1/w/2161:2174 | homologous IL_7RQB_086 | NA | ||
1/w/2129:2136, 1/w/2155:2159 | NA | NA | ||
1/w/2297:2299, 1/w/2317:2321 | Isolated tHS basepair with bulges homologous IL_7RQB_088 | NA IL_38958.6* | ||
1/w/2350:2353, 1/w/2364:2367 | Double sheared homologous IL_7RQB_089 | NA IL_09705.7* | ||
1/w/2401:2403, 1/w/2414:2415 | NA | NA | ||
1/w/2454:2455, 1/w/2496:2498 | Major groove platform geometric IL_7A0S_073 | NA IL_80663.10* | ||
1/w/2457:2459, 1/w/2493:2494 | Major groove platform geometric IL_1S03_004 | NA IL_80663.10* | ||
1/w/2459:2461, 1/w/2489:2493 | Major groove minor groove platform with extra cWW geometric IL_5J7L_337 | NA IL_96042.4* | ||
1/w/2466:2470, 1/w/2480:2484 | Triple sheared homologous IL_7RQB_095 | NA IL_56467.6* | ||
1/w/2507:2508, 1/w/2580:2582 | Major groove platform homologous IL_7RQB_096 | NA IL_02060.4* | ||
1/w/2510:2512, 1/w/2574:2578 | Isolated non-canonical cWW with bulges homologous IL_7RQB_097 | NA IL_01312.13* | ||
1/w/2512:2513, 1/w/2571:2574 | Multiple bulged bases geometric IL_7RQB_098 | NA IL_13730.12* | ||
1/w/2522:2523, 1/w/2540:2543 | Minor groove platform with intercalation homologous IL_7RQB_099 | NA IL_95601.1* | ||
1/w/2591:2592, 1/w/2601:2603 | Single bulged A geometric IL_2QUX_002 | NA IL_80007.16* | ||
1/w/2636:2640, 1/w/2774:2782 | tSH-tHS-tHW homologous IL_7RQB_102 | NA IL_34907.2* | ||
1/w/2652:2658, 1/w/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge homologous IL_7RQB_103 | NA IL_35110.5* | ||
1/w/2680:2684, 1/w/2725:2727 | C-loop homologous IL_7RQB_104 | NA IL_63596.4* | ||
1/w/2687:2691, 1/w/2718:2722 | homologous IL_7RQB_105 | NA IL_08296.3* | ||
1/w/2695:2697, 1/w/2710:2714 | geometric IL_5VSU_002 | NA IL_01312.13* | ||
1/w/2737:2742, 1/w/2762:2767 | UAA/GAN with extra cWW geometric IL_5J7L_350 | NA IL_49767.4* | ||
1/w/2838:2839, 1/w/2878:2880 | Single bulged C homologous IL_7RQB_108 | NA IL_61258.10* | ||
1/w/2843:2845, 1/w/2871:2874 | NA | NA | ||
1/w/2847:2852, 1/w/2865:2869 | homologous IL_7RQB_110 | NA IL_83162.3* | ||
1/x/17:18, 1/x/65:67 | Major groove intercalation geometric IL_4V9F_101 | NA IL_40508.4* | ||
1/x/23:28, 1/x/56:60 | NA | NA | ||
1/x/30:31, 1/x/51:54 | NA | NA | ||
1/x/34:38, 1/x/44:48 | Symmetric double minor groove platform homologous IL_5TBW_376 | NA IL_58103.5* | ||
1/x/71:79, 1/x/97:105 | Bacterial 5S Loop E geometric IL_5J7L_359 | NA IL_56455.3* | ||
1/y/30:32, 1/y/552:553 | NA | NA | ||
1/y/44:45, 1/y/396:398 | NA | NA | ||
1/y/47:52, 1/y/359:361 | NA | NA | ||
1/y/54:56, 1/y/356:357 | NA | NA | ||
1/y/67:69, 1/y/99:102 | NA | NA | ||
1/y/129A:131, 1/y/231:232 | NA | NA | ||
1/y/132:136, 1/y/227:230 | NA | NA | ||
1/y/148:153, 1/y/168:174 | NA | NA | ||
1/y/186A:186C, 1/y/191E:191G | NA | NA | ||
1/y/242:247, 1/y/277:284 | NA | NA | ||
1/y/249:252, 1/y/274:275 | NA | NA | ||
1/y/292:293, 1/y/304:308 | NA | NA | ||
1/y/367:370, 1/y/391:393 | NA | NA | ||
1/y/371:375, 1/y/389:390 | NA | NA | ||
1/y/375:376, 1/y/387:389 | NA | NA | ||
1/y/409:417, 1/y/426:433 | NA | NA | ||
1/y/446:450, 1/y/483:488 | NA | NA | ||
1/y/450:455, 1/y/477:483 | NA | NA | ||
1/y/504:511, 1/y/540:541 | NA | NA | ||
1/y/515:521, 1/y/528:536 | NA | NA | ||
1/y/569:575, 1/y/880:881 | NA | NA | ||
1/y/580:584, 1/y/757:761 | NA | NA | ||
1/y/594:596, 1/y/644:645 | NA | NA | ||
1/y/597:598, 1/y/640:643 | NA | NA | ||
1/y/605:612, 1/y/628:633 | NA | NA | ||
1/y/654:656, 1/y/750:754 | NA | NA | ||
1/y/657:658, 1/y/747:749 | NA | NA | ||
1/y/662:666, 1/y/740:743 | NA | NA | ||
1/y/673:677, 1/y/713:717 | NA | NA | ||
1/y/683:688, 1/y/699:707 | NA | NA | ||
1/y/774:778, 1/y/804:805 | NA | NA | ||
1/y/779:783, 1/y/799:803 | NA | NA | ||
1/y/887:895, 1/y/904:910 | NA | NA | ||
1/y/922:923, 1/y/1393:1395 | NA | NA | ||
1/y/925:927, 1/y/1390:1391 | NA | NA | ||
1/y/933:935, 1/y/1380:1384 | NA | NA | ||
1/y/953:954, 1/y/1226:1228 | NA | NA | ||
1/y/993:997, 1/y/1044:1045 | NA | NA | ||
1/y/1048:1050, 1/y/1208:1209 | NA | NA | ||
1/y/1050:1056, 1/y/1204:1208 | NA | NA | ||
1/y/1057:1059, 1/y/1198:1203 | NA | NA | ||
1/y/1060:1061, 1/y/1195:1197 | NA | NA | ||
1/y/1061:1063, 1/y/1193:1195 | NA | NA | ||
1/y/1124:1127, 1/y/1145:1149 | NA | NA | ||
1/y/1129:1132, 1/y/1142:1143 | NA | NA | ||
1/y/1158:1161, 1/y/1175:1181 | NA | NA | ||
1/y/1247:1253, 1/y/1284:1290 | NA | NA | ||
1/y/1255:1258, 1/y/1277:1282 | NA | NA | ||
1/y/1259:1262, 1/y/1273:1276 | NA | NA | ||
1/y/1303:1308, 1/y/1329:1334 | NA | NA | ||
1/y/1399:1401, 1/y/1501:1504 | NA | NA | ||
1/y/1401:1409, 1/y/1491:1501 | NA | NA | ||
1/y/1412:1414, 1/y/1486:1488 | NA | NA | ||
1/y/1416:1419, 1/y/1481:1484 | NA | NA | ||
1/y/1431:1435, 1/y/1466:1469 | NA | NA | ||
1/y/1435:1437, 1/y/1464:1466 | NA | NA | ||
1/y/1440:1447, 1/y/1459:1461 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_4V4J_008 | Multiple bulged bases geometric IL_6JXM_001 | ||
IL_4V4J_119 | NA |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/w/30:31, 1/w/474:481, 1/w/509:510 | homologous J3_7RQB_001 | NA | ||
1/w/56:57, 1/w/70:76, 1/w/110:114 | homologous J3_7RQB_002 | NA | ||
1/w/269:270D, 1/w/270X:271, 1/w/366B:370 | NA | NA | ||
1/w/683:689, 1/w/773:775, 1/w/791:794 | homologous J3_7RQB_004 | NA | ||
1/w/698:700, 1/w/732:736, 1/w/760:763 | NA | NA | ||
1/w/1055:1057, 1/w/1081:1087, 1/w/1102:1104 | homologous J3_7RQB_006 | NA | ||
1/w/1298:1303, 1/w/1625:1627, 1/w/1639:1642 | homologous J3_7RQB_007 | NA | ||
1/w/1306:1309, 1/w/1605:1611, 1/w/1620:1622 | homologous J3_7RQB_008 | NA | ||
1/w/1344:1350, 1/w/1381:1385, 1/w/1402:1403 | homologous J3_7RQB_009 | NA | ||
1/w/2091:2093, 1/w/2196:2205, 1/w/2219:2228 | homologous J3_7RQB_010 | NA | ||
1/w/2295:2297, 1/w/2321:2323, 1/w/2332:2337 | NA | NA | ||
1/w/2517:2520, 1/w/2545:2547, 1/w/2561:2567 | NA | NA | ||
1/w/2814:2815, 1/w/2831:2836, 1/w/2882:2886 | homologous J3_7RQB_014 | NA | ||
1/x/11:16, 1/x/68:70, 1/x/106:109 | NA | NA | ||
1/y/46:47, 1/y/361:366, 1/y/394:395 | NA | NA | ||
1/y/586:588, 1/y/651:654, 1/y/754:755 | NA | NA | ||
1/y/672:673, 1/y/717:725, 1/y/732:734 | NA | NA | ||
1/y/826:829, 1/y/857:861, 1/y/868:874 | NA | NA | ||
1/y/943:946, 1/y/1235:1237, 1/y/1337:1340 | NA | NA | ||
1/y/955:962, 1/y/973:984, 1/y/1221:1225 | NA | NA | ||
1/y/990:993, 1/y/1045:1047, 1/y/1210:1215 | NA | NA | ||
1/y/1003:1006, 1/y/1023:1027, 1/y/1034:1037 | NA | NA | ||
1/y/1063:1068, 1/y/1107:1113, 1/y/1187:1193 | NA | NA | ||
1/y/1073:1074, 1/y/1083:1086, 1/y/1099:1102 | NA | NA | ||
1/y/1116:1118, 1/y/1155:1158, 1/y/1181:1184 | NA | NA | ||
1/y/1237:1241, 1/y/1296:1303, 1/y/1334:1337 | NA | NA |
Problematic loops
No problematic loops
Coloring options: