4V4J | Motifs

111 Hairpin loops
169 Internal loops
26 Junction loops

Valid loops

#	loop id	location	annotation	motif
1	HL_4V4J_001 ➜	1/2/11:24	NA	NA
2	HL_4V4J_002 ➜	1/2/31:39	NA	NA
3	HL_4V4J_003 ➜	1/2/53:61	NA	NA
4	HL_4V4J_004 ➜	1/w/59:68	NA	NA
5	HL_4V4J_005 ➜	1/w/87:95	NA	NA
6	HL_4V4J_006 ➜	1/w/123:128	NA	NA
7	HL_4V4J_007 ➜	1/w/137B:141B	NA	NA
8	HL_4V4J_008 ➜	1/w/155:171	NA	NA
9	HL_4V4J_009 ➜	1/w/194:201	NA	NA
10	HL_4V4J_010 ➜	1/w/225:230	NA	NA
11	HL_4V4J_011 ➜	1/w/246:252	NA	NA
12	HL_4V4J_012 ➜	1/w/270K:270Q	NA	NA
13	HL_4V4J_013 ➜	1/w/305:312	NA	NA
14	HL_4V4J_014 ➜	1/w/319:323	NA	NA
15	HL_4V4J_015 ➜	1/w/327:335	NA	NA
16	HL_4V4J_016 ➜	1/w/382:392	NA	NA
17	HL_4V4J_017 ➜	1/w/410:417	NA	NA
18	HL_4V4J_018 ➜	1/w/462:467	NA	NA
19	HL_4V4J_019 ➜	1/w/487:493	NA	NA
20	HL_4V4J_020 ➜	1/w/544:549	NA	NA
21	HL_4V4J_021 ➜	1/w/564:577	NA	NA
22	HL_4V4J_022 ➜	1/w/611:617	NA	NA
23	HL_4V4J_023 ➜	1/w/629:634	NA	NA
24	HL_4V4J_024 ➜	1/w/641:647	NA	NA
25	HL_4V4J_025 ➜	1/w/712:719	NA	NA
26	HL_4V4J_026 ➜	1/w/744:753	NA	NA
27	HL_4V4J_027 ➜	1/w/779:785	NA	NA
28	HL_4V4J_028 ➜	1/w/825:832	NA	NA
29	HL_4V4J_029 ➜	1/w/884:892	NA	NA
30	HL_4V4J_030 ➜	1/w/955:962	NA	NA
31	HL_4V4J_031 ➜	1/w/978:985	NA	NA
32	HL_4V4J_032 ➜	1/w/1065:1073	NA	NA
33	HL_4V4J_033 ➜	1/w/1092:1099	NA	NA
34	HL_4V4J_034 ➜	1/w/1171:1178	NA	NA
35	HL_4V4J_035 ➜	1/w/1222:1227	NA	NA
36	HL_4V4J_036 ➜	1/w/1281:1289	NA	NA
37	HL_4V4J_037 ➜	1/w/1324:1330	NA	NA
38	HL_4V4J_038 ➜	1/w/1363:1368	NA	NA
39	HL_4V4J_039 ➜	1/w/1389:1398	NA	NA
40	HL_4V4J_040 ➜	1/w/1450:1461	NA	NA
41	HL_4V4J_041 ➜	1/w/1492:1498	NA	NA
42	HL_4V4J_042 ➜	1/w/1533:1538	NA	NA
43	HL_4V4J_043 ➜	1/w/1565:1568	NA	NA
44	HL_4V4J_044 ➜	1/w/1612:1619	NA	NA
45	HL_4V4J_045 ➜	1/w/1630B:1635	NA	NA
46	HL_4V4J_046 ➜	1/w/1691:1696	NA	NA
47	HL_4V4J_047 ➜	1/w/1727:1733	NA	NA
48	HL_4V4J_048 ➜	1/w/1752:1756	NA	NA
49	HL_4V4J_049 ➜	1/w/1777:1787	NA	NA
50	HL_4V4J_050 ➜	1/w/1806:1811	NA	NA
51	HL_4V4J_051 ➜	1/w/1863:1879	NA	NA
52	HL_4V4J_052 ➜	1/w/1910:1920	NA	NA
53	HL_4V4J_053 ➜	1/w/1949:1957	NA	NA
54	HL_4V4J_054 ➜	1/w/2027:2036	NA	NA
55	HL_4V4J_055 ➜	1/w/2143:2148	NA	NA
56	HL_4V4J_056 ➜	1/w/2209:2215	NA	NA
57	HL_4V4J_057 ➜	1/w/2248:2256	NA	NA
58	HL_4V4J_058 ➜	1/w/2264:2276	NA	NA
59	HL_4V4J_059 ➜	1/w/2304:2312	NA	NA
60	HL_4V4J_060 ➜	1/w/2324:2331	NA	NA
61	HL_4V4J_061 ➜	1/w/2355:2362	NA	NA
62	HL_4V4J_062 ➜	1/w/2374:2379	NA	NA
63	HL_4V4J_063 ➜	1/w/2404:2413	NA	NA
64	HL_4V4J_064 ➜	1/w/2471:2479	NA	NA
65	HL_4V4J_065 ➜	1/w/2528:2535	NA	NA
66	HL_4V4J_066 ➜	1/w/2551:2557	NA	NA
67	HL_4V4J_067 ➜	1/w/2594:2599	NA	NA
68	HL_4V4J_068 ➜	1/w/2658:2663	NA	NA
69	HL_4V4J_069 ➜	1/w/2701:2706	NA	NA
70	HL_4V4J_070 ➜	1/w/2745:2759	NA	NA
71	HL_4V4J_071 ➜	1/w/2794:2802	NA	NA
72	HL_4V4J_072 ➜	1/w/2819:2827	NA	NA
73	HL_4V4J_073 ➜	1/w/2856:2861	NA	NA
74	HL_4V4J_074 ➜	1/x/38:44	NA	NA
75	HL_4V4J_075 ➜	1/x/86:90	NA	NA
76	HL_4V4J_076 ➜	1/y/12:22	NA	NA
77	HL_4V4J_077 ➜	1/y/81:88	NA	NA
78	HL_4V4J_078 ➜	1/y/102C:103B	NA	NA
79	HL_4V4J_079 ➜	1/y/158:163	NA	NA
80	HL_4V4J_080 ➜	1/y/186G:191A	NA	NA
81	HL_4V4J_081 ➜	1/y/201:216	NA	NA
82	HL_4V4J_082 ➜	1/y/259:267	NA	NA
83	HL_4V4J_083 ➜	1/y/296:301	NA	NA
84	HL_4V4J_084 ➜	1/y/320:333	NA	NA
85	HL_4V4J_085 ➜	1/y/342:347	NA	NA
86	HL_4V4J_086 ➜	1/y/379:384	NA	NA
87	HL_4V4J_087 ➜	1/y/419:424	NA	NA
88	HL_4V4J_088 ➜	1/y/458:474	NA	NA
89	HL_4V4J_089 ➜	1/y/521:528	NA	NA
90	HL_4V4J_090 ➜	1/y/617:623	NA	NA
91	HL_4V4J_091 ➜	1/y/689:698	NA	NA
92	HL_4V4J_092 ➜	1/y/726:731	NA	NA
93	HL_4V4J_093 ➜	1/y/786:796	NA	NA
94	HL_4V4J_094 ➜	1/y/838:848	NA	NA
95	HL_4V4J_096 ➜	1/y/897:902	NA	NA
96	HL_4V4J_097 ➜	1/y/963:972	NA	NA
97	HL_4V4J_098 ➜	1/y/1012:1017	NA	NA
98	HL_4V4J_099 ➜	1/y/1027:1034	NA	NA
99	HL_4V4J_100 ➜	1/y/1076:1081	NA	NA
100	HL_4V4J_101 ➜	1/y/1089:1096	NA	NA
101	HL_4V4J_102 ➜	1/y/1134:1140	NA	NA
102	HL_4V4J_103 ➜	1/y/1165:1171	NA	NA
103	HL_4V4J_104 ➜	1/y/1265:1270	NA	NA
104	HL_4V4J_105 ➜	1/y/1314:1323	NA	NA
105	HL_4V4J_106 ➜	1/y/1356:1366	NA	NA
106	HL_4V4J_107 ➜	1/y/1449:1454	NA	NA
107	HL_4V4J_108 ➜	1/y/1515:1520	NA	NA
108	HL_4V4J_109 ➜	1/z/13:22	NA	NA
109	HL_4V4J_110 ➜	1/z/31:39	NA	NA
110	HL_4V4J_111 ➜	1/z/53:61	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_4V4J_095 ➜	all high RSRZ	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_4V4J_001 ➜	1/w/24:30,1/w/510:516	NA	NA
2	IL_4V4J_002 ➜	1/w/36:37,1/w/442:444	NA	NA
3	IL_4V4J_003 ➜	1/w/43:44,1/w/434:436	NA	NA
4	IL_4V4J_004 ➜	1/w/81:85,1/w/97:105	NA	NA
5	IL_4V4J_005 ➜	1/w/183:184,1/w/212:214	NA	NA
6	IL_4V4J_006 ➜	1/w/188:194,1/w/201:208	NA	NA
7	IL_4V4J_007 ➜	1/w/239:245,1/w/253:258	NA	NA
8	IL_4V4J_009 ➜	1/w/273A:273C,1/w/363E:364	NA	NA
9	IL_4V4J_010 ➜	1/w/273G:278,1/w/362:363A	NA	NA
10	IL_4V4J_011 ➜	1/w/280:284,1/w/356:360	NA	NA
11	IL_4V4J_012 ➜	1/w/288:290,1/w/350:352	NA	NA
12	IL_4V4J_013 ➜	1/w/292:295,1/w/343:348	NA	NA
13	IL_4V4J_014 ➜	1/w/481:484,1/w/496:509	NA	NA
14	IL_4V4J_015 ➜	1/w/605:609B,1/w/618B:623	NA	NA
15	IL_4V4J_016 ➜	1/w/672:674,1/w/806:808	NA	NA
16	IL_4V4J_017 ➜	1/w/674:678,1/w/799:806	NA	NA
17	IL_4V4J_018 ➜	1/w/697:698,1/w/763:765	NA	NA
18	IL_4V4J_019 ➜	1/w/702:703,1/w/728:730	NA	NA
19	IL_4V4J_020 ➜	1/w/703:707,1/w/724:728	NA	NA
20	IL_4V4J_021 ➜	1/w/738:741,1/w/756:758	NA	NA
21	IL_4V4J_022 ➜	1/w/775:778,1/w/786:791	NA	NA
22	IL_4V4J_023 ➜	1/w/837:838,1/w/940:942	NA	NA
23	IL_4V4J_024 ➜	1/w/844:846,1/w/931:934	NA	NA
24	IL_4V4J_025 ➜	1/w/846:850,1/w/928:931	NA	NA
25	IL_4V4J_026 ➜	1/w/858:862,1/w/915:919	NA	NA
26	IL_4V4J_027 ➜	1/w/862:863,1/w/913:915	NA	NA
27	IL_4V4J_028 ➜	1/w/864:868,1/w/909:912	NA	NA
28	IL_4V4J_029 ➜	1/w/875:877,1/w/900:902	NA	NA
29	IL_4V4J_030 ➜	1/w/877:879,1/w/898:900	NA	NA
30	IL_4V4J_031 ➜	1/w/880:881,1/w/895:897	NA	NA
31	IL_4V4J_032 ➜	1/w/952:954,1/w/963:965	NA	NA
32	IL_4V4J_033 ➜	1/w/994:996,1/w/1159:1160	NA	NA
33	IL_4V4J_034 ➜	1/w/998:1002,1/w/1153:1157	NA	NA
34	IL_4V4J_035 ➜	1/w/1004:1011,1/w/1150:1151	NA	NA
35	IL_4V4J_036 ➜	1/w/1011:1013,1/w/1149:1150	NA	NA
36	IL_4V4J_037 ➜	1/w/1018:1024,1/w/1140:1144	NA	NA
37	IL_4V4J_038 ➜	1/w/1024:1030,1/w/1124:1140	NA	NA
38	IL_4V4J_039 ➜	1/w/1031:1034,1/w/1121:1123	NA	NA
39	IL_4V4J_040 ➜	1/w/1043:1051,1/w/1108:1112	NA	NA
40	IL_4V4J_041 ➜	1/w/1058:1062,1/w/1076:1080	NA	NA
41	IL_4V4J_042 ➜	1/w/1087:1091,1/w/1100:1102	NA	NA
42	IL_4V4J_043 ➜	1/w/1197:1198,1/w/1247:1249	NA	NA
43	IL_4V4J_044 ➜	1/w/1202:1206,1/w/1240:1243	NA	NA
44	IL_4V4J_045 ➜	1/w/1208:1215,1/w/1234:1238	NA	NA
45	IL_4V4J_046 ➜	1/w/1219:1221,1/w/1229:1230	NA	NA
46	IL_4V4J_047 ➜	1/w/1262:1269,1/w/2011:2017	NA	NA
47	IL_4V4J_048 ➜	1/w/1310:1313,1/w/1603:1604	NA	NA
48	IL_4V4J_049 ➜	1/w/1319:1323,1/w/1331:1333	NA	NA
49	IL_4V4J_050 ➜	1/w/1351:1355,1/w/1376:1380	NA	NA
50	IL_4V4J_051 ➜	1/w/1357:1361,1/w/1370:1374	NA	NA
51	IL_4V4J_052 ➜	1/w/1415:1416,1/w/1582:1587	NA	NA
52	IL_4V4J_053 ➜	1/w/1417:1421,1/w/1577:1581	NA	NA
53	IL_4V4J_054 ➜	1/w/1432:1435,1/w/1557:1561	NA	NA
54	IL_4V4J_055 ➜	1/w/1437:1440,1/w/1551:1555	NA	NA
55	IL_4V4J_056 ➜	1/w/1448:1449,1/w/1462:1463	NA	NA
56	IL_4V4J_057 ➜	1/w/1469:1473,1/w/1520:1523	NA	NA
57	IL_4V4J_058 ➜	1/w/1481:1483,1/w/1506:1512	NA	NA
58	IL_4V4J_059 ➜	1/w/1489:1491,1/w/1499:1500	NA	NA
59	IL_4V4J_060 ➜	1/w/1526:1527,1/w/1544:1546B	NA	NA
60	IL_4V4J_061 ➜	1/w/1527:1531,1/w/1540:1544	NA	NA
61	IL_4V4J_062 ➜	1/w/1651:1656,1/w/2004:2006	NA	NA
62	IL_4V4J_063 ➜	1/w/1663:1665,1/w/1995:1997	NA	NA
63	IL_4V4J_064 ➜	1/w/1666:1669,1/w/1993:1994	NA	NA
64	IL_4V4J_065 ➜	1/w/1669:1674,1/w/1990:1993	NA	NA
65	IL_4V4J_066 ➜	1/w/1686:1691,1/w/1696:1702	NA	NA
66	IL_4V4J_067 ➜	1/w/1770:1771,1/w/1980:1982	NA	NA
67	IL_4V4J_068 ➜	1/w/1798:1804,1/w/1813:1821	NA	NA
68	IL_4V4J_069 ➜	1/w/1837:1840,1/w/1902:1903	NA	NA
69	IL_4V4J_070 ➜	1/w/1841:1842,1/w/1898:1901	NA	NA
70	IL_4V4J_071 ➜	1/w/1846:1849,1/w/1893:1894	NA	NA
71	IL_4V4J_072 ➜	1/w/1851:1855,1/w/1887:1891	NA	NA
72	IL_4V4J_073 ➜	1/w/1856:1860,1/w/1882:1886	NA	NA
73	IL_4V4J_074 ➜	1/w/1933:1934,1/w/1964:1967	NA	NA
74	IL_4V4J_075 ➜	1/w/1934:1945,1/w/1961:1964	NA	NA
75	IL_4V4J_076 ➜	1/w/2050:2052,1/w/2617:2618	NA	NA
76	IL_4V4J_077 ➜	1/w/2054:2056,1/w/2612:2615	NA	NA
77	IL_4V4J_078 ➜	1/w/2067:2069,1/w/2442:2443	NA	NA
78	IL_4V4J_079 ➜	1/w/2070:2071,1/w/2438:2441	NA	NA
79	IL_4V4J_080 ➜	1/w/2081:2083,1/w/2236:2239	NA	NA
80	IL_4V4J_081 ➜	1/w/2085:2087,1/w/2232:2234	NA	NA
81	IL_4V4J_082 ➜	1/w/2108:2110,1/w/2179:2181	NA	NA
82	IL_4V4J_083 ➜	1/w/2110:2120,1/w/2178:2179	NA	NA
83	IL_4V4J_084 ➜	1/w/2124:2127,1/w/2161:2174	NA	NA
84	IL_4V4J_085 ➜	1/w/2129:2136,1/w/2155:2159	NA	NA
85	IL_4V4J_086 ➜	1/w/2297:2299,1/w/2317:2321	NA	NA
86	IL_4V4J_087 ➜	1/w/2350:2353,1/w/2364:2367	NA	NA
87	IL_4V4J_088 ➜	1/w/2401:2403,1/w/2414:2415	NA	NA
88	IL_4V4J_089 ➜	1/w/2454:2455,1/w/2496:2498	NA	NA
89	IL_4V4J_090 ➜	1/w/2457:2459,1/w/2493:2494	NA	NA
90	IL_4V4J_091 ➜	1/w/2459:2461,1/w/2489:2493	NA	NA
91	IL_4V4J_092 ➜	1/w/2466:2470,1/w/2480:2484	NA	NA
92	IL_4V4J_093 ➜	1/w/2507:2508,1/w/2580:2582	NA	NA
93	IL_4V4J_094 ➜	1/w/2510:2512,1/w/2574:2578	NA	NA
94	IL_4V4J_095 ➜	1/w/2512:2513,1/w/2571:2574	NA	NA
95	IL_4V4J_096 ➜	1/w/2522:2523,1/w/2540:2543	NA	NA
96	IL_4V4J_097 ➜	1/w/2591:2592,1/w/2601:2603	NA	NA
97	IL_4V4J_098 ➜	1/w/2636:2640,1/w/2774:2782	NA	NA
98	IL_4V4J_099 ➜	1/w/2652:2658,1/w/2663:2668	NA	NA
99	IL_4V4J_100 ➜	1/w/2680:2684,1/w/2725:2727	NA	NA
100	IL_4V4J_101 ➜	1/w/2687:2691,1/w/2718:2722	NA	NA
101	IL_4V4J_102 ➜	1/w/2695:2697,1/w/2710:2714	NA	NA
102	IL_4V4J_103 ➜	1/w/2737:2742,1/w/2762:2767	NA	NA
103	IL_4V4J_104 ➜	1/w/2838:2839,1/w/2878:2880	NA	NA
104	IL_4V4J_105 ➜	1/w/2843:2845,1/w/2871:2874	NA	NA
105	IL_4V4J_106 ➜	1/w/2847:2852,1/w/2865:2869	NA	NA
106	IL_4V4J_107 ➜	1/x/17:18,1/x/65:67	NA	NA
107	IL_4V4J_108 ➜	1/x/23:28,1/x/56:60	NA	NA
108	IL_4V4J_109 ➜	1/x/30:31,1/x/51:54	NA	NA
109	IL_4V4J_110 ➜	1/x/34:38,1/x/44:48	NA	NA
110	IL_4V4J_111 ➜	1/x/71:79,1/x/97:105	NA	NA
111	IL_4V4J_112 ➜	1/y/30:32,1/y/552:553	NA	NA
112	IL_4V4J_113 ➜	1/y/44:45,1/y/396:398	NA	NA
113	IL_4V4J_114 ➜	1/y/47:52,1/y/359:361	NA	NA
114	IL_4V4J_115 ➜	1/y/54:56,1/y/356:357	NA	NA
115	IL_4V4J_116 ➜	1/y/67:69,1/y/99:102	NA	NA
116	IL_4V4J_117 ➜	1/y/129A:131,1/y/231:232	NA	NA
117	IL_4V4J_118 ➜	1/y/132:136,1/y/227:230	NA	NA
118	IL_4V4J_120 ➜	1/y/148:153,1/y/168:174	NA	NA
119	IL_4V4J_121 ➜	1/y/186A:186C,1/y/191E:191G	NA	NA
120	IL_4V4J_122 ➜	1/y/242:247,1/y/277:284	NA	NA
121	IL_4V4J_123 ➜	1/y/249:252,1/y/274:275	NA	NA
122	IL_4V4J_124 ➜	1/y/292:293,1/y/304:308	NA	NA
123	IL_4V4J_125 ➜	1/y/367:370,1/y/391:393	NA	NA
124	IL_4V4J_126 ➜	1/y/371:375,1/y/389:390	NA	NA
125	IL_4V4J_127 ➜	1/y/375:376,1/y/387:389	NA	NA
126	IL_4V4J_128 ➜	1/y/409:417,1/y/426:433	NA	NA
127	IL_4V4J_129 ➜	1/y/446:450,1/y/483:488	NA	NA
128	IL_4V4J_130 ➜	1/y/450:455,1/y/477:483	NA	NA
129	IL_4V4J_131 ➜	1/y/504:511,1/y/540:541	NA	NA
130	IL_4V4J_132 ➜	1/y/515:521,1/y/528:536	NA	NA
131	IL_4V4J_133 ➜	1/y/569:575,1/y/880:881	NA	NA
132	IL_4V4J_134 ➜	1/y/580:584,1/y/757:761	NA	NA
133	IL_4V4J_135 ➜	1/y/594:596,1/y/644:645	NA	NA
134	IL_4V4J_136 ➜	1/y/597:598,1/y/640:643	NA	NA
135	IL_4V4J_137 ➜	1/y/605:612,1/y/628:633	NA	NA
136	IL_4V4J_138 ➜	1/y/654:656,1/y/750:754	NA	NA
137	IL_4V4J_139 ➜	1/y/657:658,1/y/747:749	NA	NA
138	IL_4V4J_140 ➜	1/y/662:666,1/y/740:743	NA	NA
139	IL_4V4J_141 ➜	1/y/673:677,1/y/713:717	NA	NA
140	IL_4V4J_142 ➜	1/y/683:688,1/y/699:707	NA	NA
141	IL_4V4J_143 ➜	1/y/774:778,1/y/804:805	NA	NA
142	IL_4V4J_144 ➜	1/y/779:783,1/y/799:803	NA	NA
143	IL_4V4J_145 ➜	1/y/887:895,1/y/904:910	NA	NA
144	IL_4V4J_146 ➜	1/y/922:923,1/y/1393:1395	NA	NA
145	IL_4V4J_147 ➜	1/y/925:927,1/y/1390:1391	NA	NA
146	IL_4V4J_148 ➜	1/y/933:935,1/y/1380:1384	NA	NA
147	IL_4V4J_149 ➜	1/y/953:954,1/y/1226:1228	NA	NA
148	IL_4V4J_150 ➜	1/y/993:997,1/y/1044:1045	NA	NA
149	IL_4V4J_151 ➜	1/y/1048:1050,1/y/1208:1209	NA	NA
150	IL_4V4J_152 ➜	1/y/1050:1056,1/y/1204:1208	NA	NA
151	IL_4V4J_153 ➜	1/y/1057:1059,1/y/1198:1203	NA	NA
152	IL_4V4J_154 ➜	1/y/1060:1061,1/y/1195:1197	NA	NA
153	IL_4V4J_155 ➜	1/y/1061:1063,1/y/1193:1195	NA	NA
154	IL_4V4J_156 ➜	1/y/1124:1127,1/y/1145:1149	NA	NA
155	IL_4V4J_157 ➜	1/y/1129:1132,1/y/1142:1143	NA	NA
156	IL_4V4J_158 ➜	1/y/1158:1161,1/y/1175:1181	NA	NA
157	IL_4V4J_159 ➜	1/y/1247:1253,1/y/1284:1290	NA	NA
158	IL_4V4J_160 ➜	1/y/1255:1258,1/y/1277:1282	NA	NA
159	IL_4V4J_161 ➜	1/y/1259:1262,1/y/1273:1276	NA	NA
160	IL_4V4J_162 ➜	1/y/1303:1308,1/y/1329:1334	NA	NA
161	IL_4V4J_163 ➜	1/y/1399:1401,1/y/1501:1504	NA	NA
162	IL_4V4J_164 ➜	1/y/1401:1409,1/y/1491:1501	NA	NA
163	IL_4V4J_165 ➜	1/y/1412:1414,1/y/1486:1488	NA	NA
164	IL_4V4J_166 ➜	1/y/1416:1419,1/y/1481:1484	NA	NA
165	IL_4V4J_167 ➜	1/y/1431:1435,1/y/1466:1469	NA	NA
166	IL_4V4J_168 ➜	1/y/1435:1437,1/y/1464:1466	NA	NA
167	IL_4V4J_169 ➜	1/y/1440:1447,1/y/1459:1461	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_4V4J_008 ➜	complementary	NA
2	IL_4V4J_119 ➜	complementary	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_4V4J_001 ➜	1/w/30:31,1/w/474:481,1/w/509:510	NA	NA
2	J3_4V4J_002 ➜	1/w/56:57,1/w/70:76,1/w/110:114	NA	NA
3	J3_4V4J_003 ➜	1/w/269:270D,1/w/270X:271,1/w/366B:370	NA	NA
4	J3_4V4J_004 ➜	1/w/683:689,1/w/773:775,1/w/791:794	NA	NA
5	J3_4V4J_005 ➜	1/w/698:700,1/w/732:736,1/w/760:763	NA	NA
6	J3_4V4J_006 ➜	1/w/1055:1057,1/w/1081:1087,1/w/1102:1104	NA	NA
7	J3_4V4J_007 ➜	1/w/1298:1303,1/w/1625:1627,1/w/1639:1642	NA	NA
8	J3_4V4J_008 ➜	1/w/1306:1309,1/w/1605:1611,1/w/1620:1622	NA	NA
9	J3_4V4J_009 ➜	1/w/1344:1350,1/w/1381:1385,1/w/1402:1403	NA	NA
10	J3_4V4J_010 ➜	1/w/2091:2093,1/w/2196:2205,1/w/2219:2228	NA	NA
11	J3_4V4J_011 ➜	1/w/2295:2297,1/w/2321:2323,1/w/2332:2337	NA	NA
12	J3_4V4J_012 ➜	1/w/2517:2520,1/w/2545:2547,1/w/2561:2567	NA	NA
13	J3_4V4J_013 ➜	1/w/2814:2815,1/w/2831:2836,1/w/2882:2886	NA	NA
14	J3_4V4J_014 ➜	1/x/11:16,1/x/68:70,1/x/106:109	NA	NA
15	J3_4V4J_015 ➜	1/y/46:47,1/y/361:366,1/y/394:395	NA	NA
16	J3_4V4J_016 ➜	1/y/586:588,1/y/651:654,1/y/754:755	NA	NA
17	J3_4V4J_017 ➜	1/y/672:673,1/y/717:725,1/y/732:734	NA	NA
18	J3_4V4J_018 ➜	1/y/826:829,1/y/857:861,1/y/868:874	NA	NA
19	J3_4V4J_019 ➜	1/y/943:946,1/y/1235:1237,1/y/1337:1340	NA	NA
20	J3_4V4J_020 ➜	1/y/955:962,1/y/973:984,1/y/1221:1225	NA	NA
21	J3_4V4J_021 ➜	1/y/990:993,1/y/1045:1047,1/y/1210:1215	NA	NA
22	J3_4V4J_022 ➜	1/y/1003:1006,1/y/1023:1027,1/y/1034:1037	NA	NA
23	J3_4V4J_023 ➜	1/y/1063:1068,1/y/1107:1113,1/y/1187:1193	NA	NA
24	J3_4V4J_024 ➜	1/y/1073:1074,1/y/1083:1086,1/y/1099:1102	NA	NA
25	J3_4V4J_025 ➜	1/y/1116:1118,1/y/1155:1158,1/y/1181:1184	NA	NA
26	J3_4V4J_026 ➜	1/y/1237:1241,1/y/1296:1303,1/y/1334:1337	NA	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers

4V4J Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops