4U50 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4U50_001 | 1/1/38:45 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_4U50_002 | 1/1/69:74 | No text annotation | homologous HL_5TBW_002 NA | |
| HL_4U50_003 | 1/1/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_4U50_004 | 1/1/132:136 | No text annotation | homologous HL_5TBW_004 NA | |
| HL_4U50_005 | 1/1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_005 NA | |
| HL_4U50_006 | 1/1/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_4U50_007 | 1/1/216:224 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_4U50_008 | 1/1/278:287 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_4U50_009 | 1/1/303:312 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_4U50_010 | 1/1/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_4U50_011 | 1/1/382:387 | GNRA | homologous HL_5TBW_011 NA | |
| HL_4U50_012 | 1/1/542:549 | No text annotation | geometric HL_5VOE_001 HL_20535.2 | |
| HL_4U50_013 | 1/1/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_4U50_014 | 1/1/640:649 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_4U50_015 | 1/1/686:694 | No text annotation | homologous HL_5TBW_015 NA | |
| HL_4U50_016 | 1/1/707:712 | GNRA | homologous HL_5TBW_016 NA | |
| HL_4U50_017 | 1/1/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_4U50_018 | 1/1/763:768 | No text annotation | homologous HL_5TBW_018 NA | |
| HL_4U50_019 | 1/1/844:849 | GNRA | homologous HL_5TBW_019 NA | |
| HL_4U50_020 | 1/1/876:885 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_4U50_021 | 1/1/910:918 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_4U50_022 | 1/1/958:963 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_4U50_023 | 1/1/1023:1029 | GNRA | homologous HL_5TBW_023 NA | |
| HL_4U50_024 | 1/1/1076:1083 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_4U50_025 | 1/1/1126:1132 | GNRA | homologous HL_5TBW_025 NA | |
| HL_4U50_026 | 1/1/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_4U50_027 | 1/1/1239:1249 | No text annotation | homologous HL_5TBW_027 NA | |
| HL_4U50_229 | 1/1/1262:1277 | No text annotation | geometric HL_5TBW_227 NA | |
| HL_4U50_028 | 1/1/1266:1275 | No text annotation | geometric HL_5TBW_028 NA | |
| HL_4U50_029 | 1/1/1347:1357 | No text annotation | homologous HL_5TBW_029 NA | |
| HL_4U50_030 | 1/1/1403:1408 | GNRA | homologous HL_5TBW_030 NA | |
| HL_4U50_031 | 1/1/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_4U50_032 | 1/1/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_4U50_033 | 1/1/1544:1549 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_4U50_034 | 1/1/1566:1572 | No text annotation | homologous HL_5TBW_034 NA | |
| HL_4U50_035 | 1/1/1599:1608 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_4U50_036 | 1/1/1634:1639 | GNRA | homologous HL_5TBW_036 NA | |
| HL_4U50_037 | 1/1/1680:1688 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_4U50_038 | 1/1/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_4U50_039 | 1/1/1759:1766 | No text annotation | homologous HL_8P9A_150 HL_25967.2 | |
| HL_4U50_040 | 1/1/1792:1796 | Mini UNCG | homologous HL_5TBW_040 NA | |
| HL_4U50_041 | 1/1/1844:1851 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_4U50_042 | 1/1/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_4U50_043 | 1/1/1923:1928 | UNCG | homologous HL_5TBW_043 NA | |
| HL_4U50_045 | 1/1/2110:2114 | No text annotation | homologous HL_5TBW_045 NA | |
| HL_4U50_046 | 1/1/2135:2145 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_4U50_047 | 1/1/2164:2170 | GNRA | homologous HL_5TBW_047 NA | |
| HL_4U50_048 | 1/1/2220:2225 | GNRA | homologous HL_5TBW_048 NA | |
| HL_4U50_049 | 1/1/2253:2263 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_4U50_050 | 1/1/2292:2300 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_4U50_051 | 1/1/2369:2378 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_4U50_230 | 1/1/2534:2545 | No text annotation | ||
| HL_4U50_054 | 1/1/2568:2573 | No text annotation | homologous HL_5TBW_053 NA | |
| HL_4U50_055 | 1/1/2616:2624 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_4U50_056 | 1/1/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_4U50_057 | 1/1/2673:2681 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_4U50_058 | 1/1/2693:2700 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_4U50_059 | 1/1/2724:2732 | No text annotation | homologous HL_5TBW_058 NA | |
| HL_4U50_060 | 1/1/2744:2749 | GNRA | homologous HL_5TBW_059 NA | |
| HL_4U50_061 | 1/1/2776:2784 | Pseudoknot geometry | homologous HL_5TBW_060 NA | |
| HL_4U50_062 | 1/1/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_4U50_063 | 1/1/2897:2904 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_4U50_064 | 1/1/2920:2926 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_4U50_065 | 1/1/2963:2968 | GNRA | homologous HL_5TBW_064 NA | |
| HL_4U50_066 | 1/1/3025:3030 | GNRA | geometric HL_5TBW_065 NA | |
| HL_4U50_067 | 1/1/3068:3073 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_4U50_068 | 1/1/3110:3124 | No text annotation | homologous HL_5TBW_067 NA | |
| HL_4U50_069 | 1/1/3194:3197 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_4U50_070 | 1/1/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_4U50_071 | 1/1/3303:3311 | No text annotation | homologous HL_5TBW_070 NA | |
| HL_4U50_072 | 1/1/3350:3353 | Mini UNCG | homologous HL_5TBW_071 NA | |
| HL_4U50_073 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_4U50_074 | 1/2/70:81 | No text annotation | homologous HL_4V88_187 NA | |
| HL_4U50_075 | 1/2/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_4U50_241 | 1/2/190:195 | No text annotation | homologous HL_8P9A_193 HL_53890.2 | |
| HL_4U50_077 | 1/2/230:235 | No text annotation | geometric HL_6CZR_082 NA | |
| HL_4U50_078 | 1/2/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_4U50_232 | 1/2/274:282 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_4U50_080 | 1/2/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_4U50_081 | 1/2/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_4U50_082 | 1/2/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_4U50_083 | 1/2/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_4U50_084 | 1/2/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_4U50_242 | 1/2/487:500 | No text annotation | ||
| HL_4U50_086 | 1/2/520:532 | No text annotation | homologous HL_4V88_199 NA | |
| HL_4U50_087 | 1/2/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_4U50_088 | 1/2/703:735 | No text annotation | ||
| HL_4U50_089 | 1/2/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_4U50_233 | 1/2/777:783 | No text annotation | homologous HL_8P9A_207 HL_48417.5 | |
| HL_4U50_091 | 1/2/829:843 | Pseudoknot geometry | homologous HL_4V88_205 NA | |
| HL_4U50_092 | 1/2/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_4U50_093 | 1/2/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_4U50_094 | 1/2/997:1007 | No text annotation | homologous HL_4V88_208 NA | |
| HL_4U50_095 | 1/2/1055:1064 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_4U50_096 | 1/2/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_4U50_097 | 1/2/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_4U50_098 | 1/2/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_4U50_099 | 1/2/1238:1247 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_4U50_100 | 1/2/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_4U50_101 | 1/2/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_4U50_102 | 1/2/1359:1364 | No text annotation | homologous HL_4V88_216 NA | |
| HL_4U50_103 | 1/2/1396:1402 | GNRA | homologous HL_4V88_217 NA | |
| HL_4U50_104 | 1/2/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_4U50_105 | 1/2/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_4U50_106 | 1/2/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_4U50_108 | 1/2/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_4U50_234 | 1/3/32:45 | No text annotation | homologous HL_8P9A_183 HL_13971.1 | |
| HL_4U50_109 | 1/3/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_4U50_110 | 1/3/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_4U50_235 | 1/4/47:56 | No text annotation | homologous HL_8P4V_072 NA | |
| HL_4U50_111 | 1/4/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_4U50_112 | 1/4/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_4U50_113 | 1/4/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_4U50_114 | 1/5/38:45 | No text annotation | geometric HL_5TBW_001 NA | |
| HL_4U50_115 | 1/5/69:74 | No text annotation | homologous HL_5TBW_002 NA | |
| HL_4U50_116 | 1/5/90:96 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_4U50_117 | 1/5/132:136 | No text annotation | homologous HL_5TBW_004 NA | |
| HL_4U50_118 | 1/5/194:201 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_005 NA | |
| HL_4U50_119 | 1/5/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_4U50_120 | 1/5/216:224 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_4U50_121 | 1/5/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_4U50_122 | 1/5/303:312 | Pseudoknot geometry | geometric HL_4QLM_002 HL_77600.2 | |
| HL_4U50_123 | 1/5/357:362 | GNRA | homologous HL_5TBW_010 NA | |
| HL_4U50_124 | 1/5/382:387 | GNRA | homologous HL_5TBW_011 NA | |
| HL_4U50_125 | 1/5/543:548 | No text annotation | geometric HL_2IZN_001 HL_48417.5 | |
| HL_4U50_126 | 1/5/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_4U50_127 | 1/5/640:649 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_4U50_128 | 1/5/686:694 | No text annotation | homologous HL_5TBW_015 NA | |
| HL_4U50_129 | 1/5/707:712 | GNRA | homologous HL_5TBW_016 NA | |
| HL_4U50_130 | 1/5/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_4U50_131 | 1/5/763:768 | No text annotation | homologous HL_5TBW_018 NA | |
| HL_4U50_132 | 1/5/844:849 | GNRA | homologous HL_5TBW_019 NA | |
| HL_4U50_133 | 1/5/876:885 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_4U50_134 | 1/5/910:918 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_4U50_135 | 1/5/958:963 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_4U50_136 | 1/5/1020:1032 | No text annotation | ||
| HL_4U50_137 | 1/5/1076:1083 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_4U50_138 | 1/5/1126:1132 | GNRA | homologous HL_5TBW_025 NA | |
| HL_4U50_139 | 1/5/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_4U50_140 | 1/5/1239:1249 | No text annotation | homologous HL_8P9A_139 HL_19210.3 | |
| HL_4U50_141 | 1/5/1267:1274 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_4U50_142 | 1/5/1347:1357 | Mini UNCG | geometric HL_4OOG_001 HL_56334.1 | |
| HL_4U50_143 | 1/5/1403:1408 | GNRA | homologous HL_5TBW_030 NA | |
| HL_4U50_144 | 1/5/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_4U50_145 | 1/5/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_4U50_146 | 1/5/1544:1549 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_4U50_147 | 1/5/1562:1577 | No text annotation | ||
| HL_4U50_148 | 1/5/1599:1608 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_4U50_149 | 1/5/1634:1639 | GNRA | homologous HL_5TBW_036 NA | |
| HL_4U50_150 | 1/5/1680:1688 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_4U50_151 | 1/5/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_4U50_152 | 1/5/1760:1765 | GNRA related | homologous HL_5TBW_039 NA | |
| HL_4U50_153 | 1/5/1792:1796 | Mini UNCG | homologous HL_5TBW_040 NA | |
| HL_4U50_154 | 1/5/1844:1851 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_4U50_155 | 1/5/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_4U50_156 | 1/5/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_4U50_158 | 1/5/2110:2114 | No text annotation | homologous HL_5TBW_045 NA | |
| HL_4U50_159 | 1/5/2135:2145 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_4U50_160 | 1/5/2164:2170 | GNRA | homologous HL_5TBW_047 NA | |
| HL_4U50_161 | 1/5/2220:2225 | GNRA | homologous HL_5TBW_048 NA | |
| HL_4U50_162 | 1/5/2253:2263 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_4U50_163 | 1/5/2292:2300 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_4U50_164 | 1/5/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_4U50_243 | 1/5/2536:2543 | No text annotation | ||
| HL_4U50_167 | 1/5/2568:2573 | No text annotation | ||
| HL_4U50_168 | 1/5/2616:2624 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_4U50_169 | 1/5/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_4U50_170 | 1/5/2673:2681 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_4U50_171 | 1/5/2693:2700 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_4U50_172 | 1/5/2724:2732 | No text annotation | homologous HL_5TBW_058 NA | |
| HL_4U50_173 | 1/5/2744:2749 | GNRA | homologous HL_5TBW_059 NA | |
| HL_4U50_174 | 1/5/2776:2784 | Pseudoknot geometry | homologous HL_5TBW_060 NA | |
| HL_4U50_175 | 1/5/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_4U50_176 | 1/5/2897:2904 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_4U50_177 | 1/5/2920:2926 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_4U50_178 | 1/5/2963:2968 | GNRA | homologous HL_5TBW_064 NA | |
| HL_4U50_179 | 1/5/3025:3030 | GNRA | homologous HL_5TBW_065 NA | |
| HL_4U50_180 | 1/5/3068:3073 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_4U50_181 | 1/5/3110:3124 | No text annotation | homologous HL_5TBW_067 NA | |
| HL_4U50_237 | 1/5/3193:3199 | No text annotation | homologous HL_8P9A_179 HL_08100.1 | |
| HL_4U50_182 | 1/5/3194:3197 | Mini UNCG | geometric HL_4V9F_021 HL_48778.2 | |
| HL_4U50_183 | 1/5/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_4U50_184 | 1/5/3303:3311 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_4U50_185 | 1/5/3350:3353 | Mini UNCG | homologous HL_8C3A_072 NA | |
| HL_4U50_186 | 1/6/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_4U50_187 | 1/6/70:81 | No text annotation | homologous HL_4V88_187 NA | |
| HL_4U50_188 | 1/6/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_4U50_189 | 1/6/190:195 | No text annotation | homologous HL_4V88_189 NA | |
| HL_4U50_190 | 1/6/230:235 | No text annotation | homologous HL_4V88_190 NA | |
| HL_4U50_191 | 1/6/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_4U50_192 | 1/6/276:279 | Mini UNCG | geometric HL_4V88_192 NA | |
| HL_4U50_193 | 1/6/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_4U50_194 | 1/6/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_4U50_195 | 1/6/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_4U50_196 | 1/6/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_4U50_197 | 1/6/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_4U50_244 | 1/6/486:501 | No text annotation | homologous HL_8P9A_234 HL_64292.1 | |
| HL_4U50_199 | 1/6/520:532 | No text annotation | geometric HL_4V88_199 NA | |
| HL_4U50_200 | 1/6/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_4U50_245 | 1/6/716:722 | No text annotation | ||
| HL_4U50_203 | 1/6/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_4U50_204 | 1/6/777:783 | No text annotation | homologous HL_4V88_204 NA | |
| HL_4U50_205 | 1/6/829:843 | Pseudoknot geometry | homologous HL_4V88_205 NA | |
| HL_4U50_206 | 1/6/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_4U50_207 | 1/6/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_4U50_208 | 1/6/997:1007 | No text annotation | homologous HL_4V88_208 NA | |
| HL_4U50_209 | 1/6/1055:1064 | No text annotation | homologous HL_4V88_209 NA | |
| HL_4U50_210 | 1/6/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_4U50_211 | 1/6/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_4U50_212 | 1/6/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_4U50_213 | 1/6/1238:1247 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_4U50_214 | 1/6/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_4U50_215 | 1/6/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_4U50_216 | 1/6/1359:1364 | No text annotation | homologous HL_4V88_216 NA | |
| HL_4U50_217 | 1/6/1396:1402 | GNRA | homologous HL_4V88_217 NA | |
| HL_4U50_218 | 1/6/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_4U50_219 | 1/6/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_4U50_220 | 1/6/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_4U50_238 | 1/6/1688:1713 | No text annotation | ||
| HL_4U50_221 | 1/6/1691:1710 | No text annotation | ||
| HL_4U50_222 | 1/6/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_4U50_239 | 1/7/32:45 | No text annotation | homologous HL_8P9A_183 HL_13971.1 | |
| HL_4U50_223 | 1/7/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_4U50_224 | 1/7/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_4U50_240 | 1/8/47:56 | No text annotation | homologous HL_8P9A_186 HL_93438.2 | |
| HL_4U50_225 | 1/8/69:89 | No text annotation | homologous HL_8P9A_187 HL_51921.1 | |
| HL_4U50_226 | 1/8/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_4U50_227 | 1/8/124:129 | No text annotation | homologous HL_5TBW_076 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4U50_228 | No text annotation | ||
| HL_4U50_044 | No text annotation | ||
| HL_4U50_052 | No text annotation | ||
| HL_4U50_053 | No text annotation | ||
| HL_4U50_076 | No text annotation | ||
| HL_4U50_231 | No text annotation | ||
| HL_4U50_079 | No text annotation | ||
| HL_4U50_085 | No text annotation | ||
| HL_4U50_090 | No text annotation | ||
| HL_4U50_107 | No text annotation | ||
| HL_4U50_236 | No text annotation | ||
| HL_4U50_157 | No text annotation | ||
| HL_4U50_165 | No text annotation | ||
| HL_4U50_166 | No text annotation | ||
| HL_4U50_198 | No text annotation | ||
| HL_4U50_201 | No text annotation | ||
| HL_4U50_202 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4U50_002 | 1/1/7:8, 1/4/150:152 | Single bulged C | homologous IL_5TBW_002 NA | |
| IL_4U50_003 | 1/1/13:15, 1/4/144:145 | Single bulged U | homologous IL_5TBW_003 NA | |
| IL_4U50_004 | 1/1/27:28, 1/1/56:58 | Single stack bend | homologous IL_5TBW_004 NA | |
| IL_4U50_005 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_4U50_006 | 1/1/82:89, 1/1/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_4U50_007 | 1/1/123:124, 1/1/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_4U50_008 | 1/1/125:127, 1/1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_4U50_009 | 1/1/163:165, 1/1/257:258 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_4U50_010 | 1/1/169:170, 1/1/248:253 | No text annotation | homologous IL_5TBW_010 NA | |
| IL_4U50_495 | 1/1/177:178, 1/1/238:241 | No text annotation | ||
| IL_4U50_012 | 1/1/189:191, 1/1/204:205 | Single bulged U | homologous IL_5TBW_012 NA | |
| IL_4U50_013 | 1/1/337:339, 1/4/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_4U50_014 | 1/1/376:379, 1/1/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_4U50_015 | 1/1/404:410, 1/4/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_4U50_016 | 1/1/429:431, 1/1/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_4U50_018 | 1/1/512:513, 1/1/577:579 | Single bulged A | homologous IL_5TBW_018 NA | |
| IL_4U50_019 | 1/1/517:525, 1/1/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_4U50_020 | 1/1/531:538, 1/1/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_4U50_021 | 1/1/668:670, 1/1/792:794 | Isolated non-canonical cWW pair | homologous IL_5TBW_021 NA | |
| IL_4U50_022 | 1/1/680:684, 1/1/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_4U50_023 | 1/1/725:728, 1/1/741:745 | UAA/GAN | homologous IL_5TBW_023 NA | |
| IL_4U50_024 | 1/1/752:753, 1/1/779:781 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_4U50_025 | 1/1/755:756, 1/1/775:777 | Single bulged U | homologous IL_5TBW_025 NA | |
| IL_4U50_026 | 1/1/758:763, 1/1/768:773 | No text annotation | geometric IL_5TBW_026 NA | |
| IL_4U50_027 | 1/1/803:805, 1/1/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_4U50_028 | 1/1/805:809, 1/1/931:938 | tHW-tHW cross-strand stack | homologous IL_5TBW_028 NA | |
| IL_4U50_029 | 1/1/833:834, 1/1/859:861 | Single bulged G | homologous IL_5TBW_029 NA | |
| IL_4U50_030 | 1/1/834:838, 1/1/855:859 | Triple sheared | geometric IL_5TBW_030 NA | |
| IL_4U50_031 | 1/1/869:872, 1/1/888:890 | Major groove platform with extra cWW | homologous IL_5TBW_031 NA | |
| IL_4U50_032 | 1/1/873:875, 1/1/886:887 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_4U50_033 | 1/1/907:909, 1/1/919:923 | Multiple bulged bases | homologous IL_5TBW_033 NA | |
| IL_4U50_034 | 1/1/954:956, 1/1/965:967 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_4U50_035 | 1/1/969:970, 1/1/1111:1113 | Single stack bend | homologous IL_5TBW_035 NA | |
| IL_4U50_036 | 1/1/977:981, 1/1/1102:1104 | 180 degree turn | homologous IL_5TBW_036 NA | |
| IL_4U50_037 | 1/1/983:985, 1/1/1099:1100 | Single bulged G | homologous IL_5TBW_037 NA | |
| IL_4U50_038 | 1/1/991:997, 1/1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5TBW_038 NA | |
| IL_4U50_039 | 1/1/997:998, 1/1/1050:1052 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_4U50_040 | 1/1/999:1004, 1/1/1046:1049 | C-loop | homologous IL_5TBW_040 NA | |
| IL_4U50_041 | 1/1/1006:1009, 1/1/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_4U50_042 | 1/1/1009:1011, 1/1/1039:1041 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_4U50_043 | 1/1/1014:1018, 1/1/1034:1036 | No text annotation | homologous IL_8P9A_271 IL_11415.1 | |
| IL_4U50_044 | 1/1/1069:1071, 1/1/1087:1089 | Isolated non-canonical cWW pair | homologous IL_5TBW_044 NA | |
| IL_4U50_045 | 1/1/1074:1076, 1/1/1083:1084 | Single bulged A | geometric IL_5TBW_045 NA | |
| IL_4U50_046 | 1/1/1120:1122, 1/1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_4U50_048 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_4U50_049 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot | geometric IL_5TBW_049 NA | |
| IL_4U50_050 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U | homologous IL_5TBW_050 NA | |
| IL_4U50_051 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_4U50_052 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_4U50_053 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_4U50_054 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn | homologous IL_5TBW_054 NA | |
| IL_4U50_055 | 1/1/1234:1238, 1/1/1250:1254 | No text annotation | ||
| IL_4U50_056 | 1/1/1262:1266, 1/1/1275:1277 | Major groove platform with extra cWW | homologous IL_5TBW_056 NA | |
| IL_4U50_057 | 1/1/1376:1378, 1/1/1428:1431 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_4U50_058 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | homologous IL_5TBW_058 NA | |
| IL_4U50_059 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_4U50_060 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_4U50_061 | 1/1/1444:1450, 1/1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_4U50_464 | 1/1/1501:1505, 1/1/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.11 | |
| IL_4U50_063 | 1/1/1532:1536, 1/1/1585:1590 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_4U50_064 | 1/1/1618:1621, 1/1/1824:1826 | Other IL | homologous IL_5TBW_064 NA | |
| IL_4U50_496 | 1/1/1623:1624, 1/1/1819:1822 | Major groove platform related | homologous IL_8P9A_293 IL_48076.6 | |
| IL_4U50_066 | 1/1/1627:1631, 1/1/1811:1816 | No text annotation | homologous IL_5TBW_066 NA | |
| IL_4U50_067 | 1/1/1645:1649, 1/1/1806:1810 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_4U50_068 | 1/1/1661:1663, 1/1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_5TBW_068 NA | |
| IL_4U50_069 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_4U50_070 | 1/1/1670:1671, 1/1/1776:1778 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_4U50_071 | 1/1/1694:1698, 1/1/1747:1752 | No text annotation | homologous IL_5TBW_071 NA | |
| IL_4U50_072 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_4U50_073 | 1/1/1711:1717, 1/1/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_4U50_074 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_4U50_075 | 1/1/1895:1897, 1/1/2338:2340 | Isolated tWW turn | homologous IL_5TBW_075 NA | |
| IL_4U50_076 | 1/1/1898:1901, 1/1/2336:2337 | Major groove platform; stack outside cWW | homologous IL_5TBW_076 NA | |
| IL_4U50_466 | 1/1/1898:1906, 1/1/2333:2337 | No text annotation | homologous IL_8P9A_305 IL_22854.4 | |
| IL_4U50_077 | 1/1/1901:1906, 1/1/2333:2336 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_4U50_078 | 1/1/1918:1923, 1/1/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_4U50_079 | 1/1/1940:1942, 1/1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
| IL_4U50_080 | 1/1/1947:1948, 1/1/2098:2101 | No text annotation | homologous IL_5TBW_080 NA | |
| IL_4U50_497 | 1/1/1951:1953, 1/1/2094:2095 | Single stack bend | geometric IL_5J7L_044 IL_26793.1 | |
| IL_4U50_082 | 1/1/2128:2129, 1/1/2323:2325 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_4U50_083 | 1/1/2156:2161, 1/1/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_4U50_084 | 1/1/2196:2199, 1/1/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_4U50_085 | 1/1/2200:2201, 1/1/2241:2244 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_4U50_086 | 1/1/2204:2206, 1/1/2237:2238 | Single bulged U | geometric IL_5TBW_086 NA | |
| IL_4U50_468 | 1/1/2204:2210, 1/1/2235:2238 | No text annotation | ||
| IL_4U50_087 | 1/1/2206:2210, 1/1/2235:2237 | Major groove platform with extra pair | homologous IL_5TBW_087 NA | |
| IL_4U50_088 | 1/1/2211:2217, 1/1/2228:2234 | No text annotation | homologous IL_5TBW_088 NA | |
| IL_4U50_089 | 1/1/2276:2277, 1/1/2307:2310 | Bulged stacked bases | homologous IL_5TBW_089 NA | |
| IL_4U50_090 | 1/1/2277:2288, 1/1/2304:2307 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_4U50_091 | 1/1/2391:2394, 1/1/2986:2988 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_4U50_092 | 1/1/2396:2398, 1/1/2981:2984 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_4U50_093 | 1/1/2409:2411, 1/1/2811:2812 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_4U50_094 | 1/1/2412:2413, 1/1/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_4U50_095 | 1/1/2423:2425, 1/1/2604:2607 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_4U50_096 | 1/1/2520:2526, 1/1/2584:2587 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_4U50_097 | 1/1/2614:2615, 1/1/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_4U50_098 | 1/1/2666:2668, 1/1/2686:2690 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_4U50_099 | 1/1/2718:2721, 1/1/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_4U50_100 | 1/1/2770:2773, 1/1/2787:2788 | Single stack bend with bulge | homologous IL_5TBW_101 NA | |
| IL_4U50_101 | 1/1/2823:2824, 1/1/2865:2867 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_4U50_102 | 1/1/2824:2826, 1/1/2863:2865 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_4U50_103 | 1/1/2826:2828, 1/1/2862:2863 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_4U50_104 | 1/1/2828:2830, 1/1/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
| IL_4U50_105 | 1/1/2835:2839, 1/1/2849:2853 | Triple sheared | homologous IL_5TBW_106 NA | |
| IL_4U50_106 | 1/1/2876:2877, 1/1/2949:2951 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_4U50_107 | 1/1/2879:2881, 1/1/2943:2947 | Isolated non-canonical cWW with bulges | homologous IL_5TBW_108 NA | |
| IL_4U50_108 | 1/1/2881:2882, 1/1/2940:2943 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_4U50_109 | 1/1/2889:2891, 1/1/2912:2914 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_4U50_110 | 1/1/2891:2892, 1/1/2909:2912 | Major groove platform with intercalation | homologous IL_5TBW_111 NA | |
| IL_4U50_111 | 1/1/2918:2920, 1/1/2926:2928 | Isolated non-canonical cWW pair | homologous IL_5TBW_112 NA | |
| IL_4U50_112 | 1/1/2960:2961, 1/1/2970:2972 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_4U50_113 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_4U50_114 | 1/1/3012:3014, 1/1/3040:3042 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_4U50_115 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_116 NA | |
| IL_4U50_116 | 1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_4U50_117 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_4U50_118 | 1/1/3063:3064, 1/1/3077:3080 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_4U50_119 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN | homologous IL_5TBW_120 NA | |
| IL_4U50_498 | 1/1/3163:3166, 1/1/3284:3287 | No text annotation | geometric IL_8BH9_001 IL_51479.1 | |
| IL_4U50_499 | 1/1/3168:3170, 1/1/3280:3282 | Isolated non-canonical cWW pair | homologous IL_8P9A_350 IL_28037.2 | |
| IL_4U50_122 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A | homologous IL_5TBW_123 NA | |
| IL_4U50_123 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | geometric IL_5TBW_124 NA | |
| IL_4U50_124 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U | homologous IL_5TBW_125 NA | |
| IL_4U50_125 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation | homologous IL_5TBW_126 NA | |
| IL_4U50_126 | 1/1/3233:3235, 1/1/3252:3254 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_4U50_127 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_5TBW_128 NA | |
| IL_4U50_128 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_4U50_129 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U | geometric IL_5TBW_130 NA | |
| IL_4U50_130 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_4U50_131 | 1/1/3328:3330, 1/1/3373:3378 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_4U50_132 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation | homologous IL_5TBW_133 NA | |
| IL_4U50_133 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U | geometric IL_5TBW_134 NA | |
| IL_4U50_134 | 1/1/3342:3345, 1/1/3360:3363 | Double sheared; A in syn | homologous IL_5TBW_135 NA | |
| IL_4U50_135 | 1/1/3349:3350, 1/1/3353:3356 | Multiple bulged bases | geometric IL_5TBW_136 NA | |
| IL_4U50_136 | 1/2/24:26, 1/2/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_4U50_137 | 1/2/35:37, 1/2/471:473 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_4U50_138 | 1/2/37:41, 1/2/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_4U50_139 | 1/2/42:48, 1/2/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_4U50_140 | 1/2/50:52, 1/2/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_4U50_141 | 1/2/58:63, 1/2/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_4U50_142 | 1/2/64:69, 1/2/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_4U50_143 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_4U50_144 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_4U50_470 | 1/2/117:122, 1/2/295:299 | No text annotation | homologous IL_8P9A_382 IL_29223.1 | |
| IL_4U50_146 | 1/2/143:149, 1/2/165:172 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_4U50_147 | 1/2/150:152, 1/2/162:164 | Isolated cWH basepair | geometric IL_6RA4_002 IL_10167.5 | |
| IL_4U50_471 | 1/2/186:189, 1/2/196:199 | Double sheared | homologous IL_8C3A_404 NA | |
| IL_4U50_148 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW | homologous IL_4V88_397 NA | |
| IL_4U50_149 | 1/2/206:208, 1/2/257:259 | Isolated non-canonical cWW pair | geometric IL_4V88_398 NA | |
| IL_4U50_150 | 1/2/265:267, 1/2/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_4U50_151 | 1/2/270:273, 1/2/283:285 | No text annotation | homologous IL_4V88_400 NA | |
| IL_4U50_152 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_4U50_153 | 1/2/318:323, 1/2/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_4U50_154 | 1/2/363:365, 1/2/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_4U50_155 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_4U50_156 | 1/2/411:413, 1/2/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_4U50_157 | 1/2/439:441, 1/2/463:464 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_4U50_500 | 1/2/443:447, 1/2/460:461 | No text annotation | homologous IL_8P9A_397 IL_03109.3 | |
| IL_4U50_501 | 1/2/447:448, 1/2/458:460 | Single bulged G | homologous IL_8P9A_398 IL_00225.13 | |
| IL_4U50_472 | 1/2/480:485, 1/2/502:508 | No text annotation | ||
| IL_4U50_160 | 1/2/517:520, 1/2/532:535 | Double sheared | geometric IL_4LFB_060 IL_09705.15 | |
| IL_4U50_161 | 1/2/550:557, 1/2/587:588 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_4U50_162 | 1/2/557:559, 1/2/586:587 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_4U50_163 | 1/2/562:568, 1/2/575:583 | Kink-turn related | homologous IL_8C3A_425 NA | |
| IL_4U50_164 | 1/2/616:622, 1/2/1104:1105 | No text annotation | homologous IL_4V88_416 NA | |
| IL_4U50_165 | 1/2/624:626, 1/2/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_4U50_166 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_4U50_167 | 1/2/646:648, 1/2/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_4U50_168 | 1/2/652:658, 1/2/676:682 | No text annotation | ||
| IL_4U50_169 | 1/2/746:747, 1/2/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_4U50_170 | 1/2/748:750, 1/2/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_4U50_473 | 1/2/751:759, 1/2/791:798 | No text annotation | homologous IL_8P9A_414 IL_59049.1 | |
| IL_4U50_172 | 1/2/817:822, 1/2/850:854 | No text annotation | ||
| IL_4U50_173 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_4U50_474 | 1/2/868:870, 1/2/957:960 | Isolated non-canonical cWW pair | homologous IL_8P9A_418 IL_57744.1 | |
| IL_4U50_475 | 1/2/871:873, 1/2/954:956 | Isolated non-canonical cWW pair | geometric IL_2R8S_001 IL_87907.2 | |
| IL_4U50_176 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_4U50_476 | 1/2/885:888, 1/2/924:927 | No text annotation | homologous IL_8P9A_421 IL_85033.2 | |
| IL_4U50_178 | 1/2/893:895, 1/2/917:919 | Isolated non-canonical cWW pair | geometric IL_4V88_433 NA | |
| IL_4U50_477 | 1/2/893:899, 1/2/910:919 | No text annotation | homologous IL_8P9A_422 IL_57741.1 | |
| IL_4U50_179 | 1/2/895:899, 1/2/910:917 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_4U50_180 | 1/2/985:990, 1/2/1014:1016 | Other IL | homologous IL_4V88_435 NA | |
| IL_4U50_181 | 1/2/990:994, 1/2/1010:1014 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_4U50_182 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_4U50_183 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_4U50_184 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_4U50_185 | 1/2/1111:1118, 1/2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_4U50_186 | 1/2/1146:1147, 1/2/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_4U50_187 | 1/2/1149:1151, 1/2/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_4U50_479 | 1/2/1157:1160, 1/2/1617:1621 | C-loop | homologous IL_8C3A_449 NA | |
| IL_4U50_189 | 1/2/1173:1175, 1/2/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_4U50_190 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_4U50_191 | 1/2/1213:1215, 1/2/1448:1450 | Isolated non-canonical cWW pair | geometric IL_4V88_446 NA | |
| IL_4U50_502 | 1/2/1224:1230, 1/2/1257:1259 | No text annotation | ||
| IL_4U50_503 | 1/2/1224:1233, 1/2/1252:1259 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_4U50_193 | 1/2/1230:1233, 1/2/1252:1257 | No text annotation | ||
| IL_4U50_194 | 1/2/1234:1236, 1/2/1249:1251 | No text annotation | homologous IL_4V88_448 NA | |
| IL_4U50_195 | 1/2/1268:1270, 1/2/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_4U50_196 | 1/2/1272:1276, 1/2/1436:1438 | Isolated cWS basepair | homologous IL_4V88_450 NA | |
| IL_4U50_481 | 1/2/1272:1278, 1/2/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_4U50_197 | 1/2/1276:1278, 1/2/1430:1436 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_4U50_198 | 1/2/1280:1281, 1/2/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_4U50_199 | 1/2/1290:1292, 1/2/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_4U50_200 | 1/2/1306:1308, 1/2/1317:1318 | Minor groove platform | geometric IL_6DLR_003 IL_51454.2 | |
| IL_4U50_201 | 1/2/1339:1342, 1/2/1383:1385 | Isolated non-canonical cWW pair | homologous IL_4V88_455 NA | |
| IL_4U50_504 | 1/2/1345:1348, 1/2/1377:1380 | No text annotation | homologous IL_8CRE_481 IL_78800.1 | |
| IL_4U50_203 | 1/2/1352:1354, 1/2/1369:1373 | Isolated non-canonical cWW pair | homologous IL_4V88_457 NA | |
| IL_4U50_204 | 1/2/1389:1391, 1/2/1407:1412 | Major groove platform; stack outside cWW | geometric IL_4V88_458 NA | |
| IL_4U50_205 | 1/2/1480:1487, 1/2/1519:1527 | No text annotation | homologous IL_4V88_459 NA | |
| IL_4U50_206 | 1/2/1488:1494, 1/2/1513:1518 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_4U50_207 | 1/2/1495:1498, 1/2/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_4U50_208 | 1/2/1540:1545, 1/2/1566:1571 | No text annotation | geometric IL_4V88_462 NA | |
| IL_4U50_209 | 1/2/1636:1638, 1/2/1764:1767 | No text annotation | geometric IL_4V88_463 NA | |
| IL_4U50_210 | 1/2/1638:1641, 1/2/1760:1764 | No text annotation | homologous IL_4V88_464 NA | |
| IL_4U50_211 | 1/2/1642:1644, 1/2/1757:1759 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_4U50_212 | 1/2/1644:1647, 1/2/1753:1757 | Non canonical cWW and near pair | geometric IL_4V88_466 NA | |
| IL_4U50_213 | 1/2/1650:1652, 1/2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_4U50_214 | 1/2/1653:1656, 1/2/1744:1747 | Double sheared | homologous IL_4V88_468 NA | |
| IL_4U50_215 | 1/2/1656:1658, 1/2/1743:1744 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_4U50_216 | 1/2/1665:1667, 1/2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_4U50_217 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared | geometric IL_4V88_471 NA | |
| IL_4U50_218 | 1/2/1672:1674, 1/2/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
| IL_4U50_219 | 1/2/1675:1678, 1/2/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_4U50_220 | 1/2/1678:1682, 1/2/1719:1723 | Triple sheared | geometric IL_4V88_474 NA | |
| IL_4U50_221 | 1/3/15:16, 1/3/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_4U50_222 | 1/3/21:27, 1/3/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_4U50_223 | 1/3/28:29, 1/3/49:52 | Minor groove platform | geometric IL_5TBW_374 NA | |
| IL_4U50_224 | 1/3/29:30, 1/3/47:49 | Single stack bend | homologous IL_5TBW_375 NA | |
| IL_4U50_225 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_4U50_226 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_4U50_227 | 1/3/84:87, 1/3/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_4U50_228 | 1/4/44:64, 1/4/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_4U50_229 | 1/4/64:66, 1/4/93:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_4U50_230 | 1/4/68:69, 1/4/89:91 | Single bulged U | geometric IL_5TBW_146 NA | |
| IL_4U50_232 | 1/5/7:8, 1/8/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_4U50_233 | 1/5/13:15, 1/8/144:145 | Single bulged U | homologous IL_5TBW_003 NA | |
| IL_4U50_234 | 1/5/27:28, 1/5/56:58 | Single stack bend | homologous IL_5TBW_004 NA | |
| IL_4U50_235 | 1/5/31:38, 1/5/45:53 | tSH-tHW-tHH-tHS | homologous IL_5TBW_005 NA | |
| IL_4U50_236 | 1/5/82:89, 1/5/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_4U50_237 | 1/5/123:124, 1/5/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_4U50_238 | 1/5/125:127, 1/5/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_4U50_239 | 1/5/163:165, 1/5/257:258 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_4U50_240 | 1/5/169:174, 1/5/244:253 | No text annotation | ||
| IL_4U50_505 | 1/5/177:178, 1/5/238:241 | No text annotation | ||
| IL_4U50_242 | 1/5/189:191, 1/5/204:205 | Single bulged U | homologous IL_5TBW_012 NA | |
| IL_4U50_243 | 1/5/337:339, 1/8/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_4U50_244 | 1/5/376:379, 1/5/390:403 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_4U50_245 | 1/5/404:410, 1/8/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_4U50_246 | 1/5/429:431, 1/5/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_4U50_248 | 1/5/512:513, 1/5/577:579 | Single bulged A | homologous IL_5TBW_018 NA | |
| IL_4U50_249 | 1/5/517:525, 1/5/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_4U50_250 | 1/5/531:538, 1/5/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_4U50_251 | 1/5/668:670, 1/5/792:794 | Isolated non-canonical cWW pair | homologous IL_5TBW_021 NA | |
| IL_4U50_252 | 1/5/680:684, 1/5/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_4U50_253 | 1/5/725:728, 1/5/741:745 | UAA/GAN | homologous IL_5TBW_023 NA | |
| IL_4U50_254 | 1/5/752:753, 1/5/779:781 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_4U50_255 | 1/5/755:756, 1/5/775:777 | Single bulged U | homologous IL_5TBW_025 NA | |
| IL_4U50_256 | 1/5/758:763, 1/5/768:773 | No text annotation | geometric IL_5TBW_026 NA | |
| IL_4U50_257 | 1/5/803:805, 1/5/938:940 | Isolated non-canonical cWW pair | homologous IL_5TBW_027 NA | |
| IL_4U50_258 | 1/5/805:809, 1/5/931:938 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_4U50_259 | 1/5/828:829, 1/5/895:897 | Single bulged A | geometric IL_7A0S_016 IL_31462.5 | |
| IL_4U50_260 | 1/5/833:834, 1/5/859:861 | Single bulged G | geometric IL_5TBW_029 NA | |
| IL_4U50_261 | 1/5/834:838, 1/5/855:859 | Triple sheared | homologous IL_5TBW_030 NA | |
| IL_4U50_262 | 1/5/869:872, 1/5/888:890 | Major groove platform with extra cWW | homologous IL_5TBW_031 NA | |
| IL_4U50_263 | 1/5/873:875, 1/5/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_4U50_264 | 1/5/907:909, 1/5/919:923 | Multiple bulged bases | homologous IL_5TBW_033 NA | |
| IL_4U50_265 | 1/5/954:956, 1/5/965:967 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_4U50_266 | 1/5/969:970, 1/5/1111:1113 | Single stack bend | homologous IL_5TBW_035 NA | |
| IL_4U50_267 | 1/5/977:981, 1/5/1102:1104 | 180 degree turn | homologous IL_5TBW_036 NA | |
| IL_4U50_268 | 1/5/983:985, 1/5/1099:1100 | Single bulged G | homologous IL_5TBW_037 NA | |
| IL_4U50_269 | 1/5/991:997, 1/5/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5TBW_038 NA | |
| IL_4U50_270 | 1/5/997:998, 1/5/1050:1052 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_4U50_271 | 1/5/999:1004, 1/5/1046:1049 | C-loop | homologous IL_5TBW_040 NA | |
| IL_4U50_272 | 1/5/1006:1009, 1/5/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_4U50_273 | 1/5/1009:1011, 1/5/1039:1041 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_4U50_506 | 1/5/1014:1018, 1/5/1034:1036 | No text annotation | homologous IL_8CRE_477 IL_31737.3 | |
| IL_4U50_275 | 1/5/1069:1071, 1/5/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_4U50_276 | 1/5/1074:1076, 1/5/1083:1084 | Single bulged A | homologous IL_5TBW_045 NA | |
| IL_4U50_277 | 1/5/1120:1122, 1/5/1136:1138 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_4U50_278 | 1/5/1167:1171, 1/5/1328:1332 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_4U50_279 | 1/5/1173:1180, 1/5/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_4U50_280 | 1/5/1180:1182, 1/5/1324:1325 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_4U50_281 | 1/5/1187:1194, 1/5/1314:1319 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_4U50_282 | 1/5/1194:1205, 1/5/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_4U50_283 | 1/5/1207:1209, 1/5/1296:1297 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_4U50_284 | 1/5/1218:1226, 1/5/1283:1287 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_4U50_285 | 1/5/1234:1238, 1/5/1250:1254 | No text annotation | homologous IL_8C3A_058 NA | |
| IL_4U50_286 | 1/5/1262:1266, 1/5/1275:1277 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_51387.2 | |
| IL_4U50_287 | 1/5/1376:1378, 1/5/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_4U50_288 | 1/5/1385:1387, 1/5/1420:1421 | Single bulged A | homologous IL_5TBW_058 NA | |
| IL_4U50_289 | 1/5/1388:1395, 1/5/1415:1419 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_4U50_290 | 1/5/1398:1400, 1/5/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_4U50_291 | 1/5/1444:1450, 1/5/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_4U50_292 | 1/5/1492:1495, 1/5/1835:1836 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_50694.7 | |
| IL_4U50_485 | 1/5/1501:1505, 1/5/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.11 | |
| IL_4U50_294 | 1/5/1532:1536, 1/5/1585:1590 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_4U50_295 | 1/5/1618:1620, 1/5/1825:1826 | No text annotation | ||
| IL_4U50_486 | 1/5/1618:1621, 1/5/1824:1826 | No text annotation | homologous IL_8P9A_292 IL_15698.3 | |
| IL_4U50_487 | 1/5/1623:1624, 1/5/1819:1822 | Major groove platform related | homologous IL_8P9A_293 IL_48076.6 | |
| IL_4U50_297 | 1/5/1627:1631, 1/5/1811:1816 | No text annotation | homologous IL_5TBW_066 NA | |
| IL_4U50_298 | 1/5/1645:1649, 1/5/1806:1810 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_4U50_299 | 1/5/1661:1663, 1/5/1786:1788 | Isolated non-canonical cWW pair | homologous IL_5TBW_068 NA | |
| IL_4U50_300 | 1/5/1669:1670, 1/5/1778:1780 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_4U50_301 | 1/5/1670:1671, 1/5/1776:1778 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_4U50_302 | 1/5/1694:1698, 1/5/1747:1752 | No text annotation | homologous IL_5TBW_071 NA | |
| IL_4U50_303 | 1/5/1702:1707, 1/5/1737:1743 | No text annotation | homologous IL_8C3A_078 NA | |
| IL_4U50_488 | 1/5/1711:1717, 1/5/1727:1733 | No text annotation | homologous IL_8P9A_301 IL_69543.3 | |
| IL_4U50_305 | 1/5/1883:1889, 1/5/2346:2349 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_4U50_306 | 1/5/1895:1897, 1/5/2338:2340 | Isolated tWW turn | homologous IL_5TBW_075 NA | |
| IL_4U50_307 | 1/5/1898:1901, 1/5/2336:2337 | Major groove platform; stack outside cWW | homologous IL_5TBW_076 NA | |
| IL_4U50_489 | 1/5/1898:1906, 1/5/2333:2337 | No text annotation | homologous IL_8P9A_305 IL_22854.4 | |
| IL_4U50_308 | 1/5/1901:1906, 1/5/2333:2336 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_4U50_309 | 1/5/1918:1923, 1/5/1928:1934 | tSH-tSH-tHH-tHS | geometric IL_5TBW_078 NA | |
| IL_4U50_310 | 1/5/1940:1942, 1/5/2106:2108 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
| IL_4U50_311 | 1/5/1947:1948, 1/5/2098:2101 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_4U50_312 | 1/5/2128:2129, 1/5/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_4U50_313 | 1/5/2156:2161, 1/5/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_4U50_314 | 1/5/2196:2199, 1/5/2245:2246 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_4U50_315 | 1/5/2200:2201, 1/5/2241:2244 | Major groove intercalation | homologous IL_5TBW_085 NA | |
| IL_4U50_316 | 1/5/2204:2206, 1/5/2237:2238 | Single bulged U | homologous IL_5TBW_086 NA | |
| IL_4U50_490 | 1/5/2206:2210, 1/5/2235:2237 | No text annotation | homologous IL_8P9A_315 IL_36516.3 | |
| IL_4U50_491 | 1/5/2210:2217, 1/5/2228:2235 | No text annotation | ||
| IL_4U50_317 | 1/5/2276:2277, 1/5/2307:2310 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_4U50_318 | 1/5/2277:2288, 1/5/2304:2307 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_4U50_319 | 1/5/2391:2394, 1/5/2986:2988 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_4U50_320 | 1/5/2396:2398, 1/5/2981:2984 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_4U50_321 | 1/5/2409:2411, 1/5/2811:2812 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_4U50_322 | 1/5/2412:2413, 1/5/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_4U50_323 | 1/5/2423:2425, 1/5/2604:2607 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_4U50_324 | 1/5/2520:2526, 1/5/2584:2587 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_4U50_325 | 1/5/2614:2615, 1/5/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_4U50_326 | 1/5/2666:2668, 1/5/2686:2690 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_4U50_327 | 1/5/2714:2716, 1/5/2740:2741 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_4U50_328 | 1/5/2718:2721, 1/5/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_4U50_329 | 1/5/2770:2773, 1/5/2787:2788 | Single stack bend with bulge | homologous IL_8C3A_110 NA | |
| IL_4U50_330 | 1/5/2823:2826, 1/5/2863:2867 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_4U50_331 | 1/5/2826:2828, 1/5/2862:2863 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_4U50_332 | 1/5/2828:2830, 1/5/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
| IL_4U50_333 | 1/5/2835:2839, 1/5/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_4U50_334 | 1/5/2876:2877, 1/5/2949:2951 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_4U50_335 | 1/5/2879:2881, 1/5/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_4U50_336 | 1/5/2881:2882, 1/5/2940:2943 | Multiple bulged bases | homologous IL_5TBW_109 NA | |
| IL_4U50_337 | 1/5/2889:2891, 1/5/2912:2914 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_4U50_338 | 1/5/2891:2892, 1/5/2909:2912 | Major groove platform with intercalation | homologous IL_5TBW_111 NA | |
| IL_4U50_339 | 1/5/2918:2920, 1/5/2926:2928 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_4U50_340 | 1/5/2960:2961, 1/5/2970:2972 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_4U50_341 | 1/5/3004:3007, 1/5/3139:3144 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_4U50_342 | 1/5/3012:3014, 1/5/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_4U50_343 | 1/5/3018:3025, 1/5/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_4U50_344 | 1/5/3047:3051, 1/5/3091:3094 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_4U50_345 | 1/5/3054:3059, 1/5/3084:3088 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_4U50_346 | 1/5/3063:3064, 1/5/3077:3080 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_4U50_347 | 1/5/3103:3107, 1/5/3127:3131 | UAA/GAN | homologous IL_5TBW_120 NA | |
| IL_4U50_348 | 1/5/3161:3166, 1/5/3284:3289 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_4U50_507 | 1/5/3168:3170, 1/5/3280:3282 | Isolated non-canonical cWW pair | homologous IL_8P9A_350 IL_28037.2 | |
| IL_4U50_350 | 1/5/3177:3179, 1/5/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_4U50_351 | 1/5/3179:3188, 1/5/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_4U50_352 | 1/5/3193:3194, 1/5/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_4U50_353 | 1/5/3225:3229, 1/5/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_4U50_354 | 1/5/3233:3235, 1/5/3252:3254 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_4U50_355 | 1/5/3235:3238, 1/5/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_5TBW_128 NA | |
| IL_4U50_356 | 1/5/3300:3303, 1/5/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_5TBW_129 NA | |
| IL_4U50_357 | 1/5/3318:3320, 1/5/3387:3388 | Single bulged U | homologous IL_8C3A_136 NA | |
| IL_4U50_358 | 1/5/3324:3325, 1/5/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_4U50_359 | 1/5/3328:3330, 1/5/3373:3378 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_4U50_360 | 1/5/3332:3337, 1/5/3367:3371 | No text annotation | homologous IL_5TBW_133 NA | |
| IL_4U50_361 | 1/5/3340:3342, 1/5/3363:3364 | Single bulged U | geometric IL_4V88_439 NA | |
| IL_4U50_362 | 1/5/3342:3345, 1/5/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_4U50_363 | 1/5/3349:3350, 1/5/3353:3356 | Multiple bulged bases | geometric IL_5TBW_136 NA | |
| IL_4U50_364 | 1/6/24:26, 1/6/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_4U50_365 | 1/6/35:37, 1/6/471:473 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_4U50_366 | 1/6/37:41, 1/6/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_4U50_367 | 1/6/42:48, 1/6/431:433 | No text annotation | homologous IL_4V88_387 NA | |
| IL_4U50_368 | 1/6/50:52, 1/6/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_4U50_369 | 1/6/58:63, 1/6/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_4U50_370 | 1/6/64:69, 1/6/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_4U50_371 | 1/6/109:112, 1/6/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_4U50_372 | 1/6/113:116, 1/6/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_4U50_373 | 1/6/117:122, 1/6/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_4U50_374 | 1/6/143:149, 1/6/165:172 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_4U50_375 | 1/6/150:152, 1/6/162:164 | Isolated non-canonical cWW contact | homologous IL_4V88_395 NA | |
| IL_4U50_376 | 1/6/186:189, 1/6/196:199 | Double sheared | homologous IL_4V88_396 NA | |
| IL_4U50_377 | 1/6/204:206, 1/6/259:263 | Major groove platform with extra cWW | homologous IL_4V88_397 NA | |
| IL_4U50_378 | 1/6/206:208, 1/6/257:259 | Isolated non-canonical cWW pair | geometric IL_4V88_398 NA | |
| IL_4U50_379 | 1/6/265:267, 1/6/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_4U50_380 | 1/6/270:273, 1/6/283:285 | No text annotation | homologous IL_4V88_400 NA | |
| IL_4U50_381 | 1/6/275:276, 1/6/279:281 | Single bulged U | homologous IL_4V88_401 NA | |
| IL_4U50_382 | 1/6/311:316, 1/6/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_4U50_383 | 1/6/318:323, 1/6/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_4U50_384 | 1/6/363:365, 1/6/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_4U50_385 | 1/6/389:391, 1/6/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_4U50_386 | 1/6/411:413, 1/6/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_4U50_387 | 1/6/439:441, 1/6/463:464 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_4U50_508 | 1/6/443:447, 1/6/460:461 | No text annotation | homologous IL_8P9A_397 IL_03109.3 | |
| IL_4U50_509 | 1/6/447:448, 1/6/458:460 | Single bulged G | homologous IL_8P9A_398 IL_00225.13 | |
| IL_4U50_389 | 1/6/481:482, 1/6/505:507 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_4U50_390 | 1/6/517:518, 1/6/533:535 | Minor groove platform | geometric IL_4LFB_054 IL_51454.2 | |
| IL_4U50_391 | 1/6/518:520, 1/6/532:533 | Minor groove platform | homologous IL_4V88_412 NA | |
| IL_4U50_392 | 1/6/550:557, 1/6/587:588 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_4U50_393 | 1/6/557:559, 1/6/586:587 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_4U50_394 | 1/6/562:568, 1/6/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_4U50_395 | 1/6/616:622, 1/6/1104:1105 | No text annotation | homologous IL_4V88_416 NA | |
| IL_4U50_396 | 1/6/624:626, 1/6/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_4U50_397 | 1/6/627:631, 1/6/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_4U50_398 | 1/6/646:648, 1/6/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_4U50_510 | 1/6/650:653, 1/6/677:684 | No text annotation | ||
| IL_4U50_400 | 1/6/703:708, 1/6/730:735 | Triple sheared related | homologous IL_4V88_421 NA | |
| IL_4U50_401 | 1/6/709:712, 1/6/726:729 | Tandem non-canonical cWW pairs | geometric IL_4EYA_003 IL_77658.1 | |
| IL_4U50_402 | 1/6/746:747, 1/6/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_4U50_403 | 1/6/748:750, 1/6/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_4U50_404 | 1/6/751:759, 1/6/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_4U50_405 | 1/6/819:822, 1/6/850:852 | Isolated non-canonical cWW pair | homologous IL_4V88_426 NA | |
| IL_4U50_406 | 1/6/865:866, 1/6/962:965 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_4U50_407 | 1/6/868:870, 1/6/957:960 | Isolated non-canonical cWW pair | geometric IL_3TD0_005 IL_57744.1 | |
| IL_4U50_408 | 1/6/871:874, 1/6/953:956 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_4U50_409 | 1/6/874:878, 1/6/950:953 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_4U50_410 | 1/6/885:888, 1/6/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_4U50_411 | 1/6/893:899, 1/6/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_4U50_412 | 1/6/985:990, 1/6/1014:1016 | Other IL | homologous IL_4V88_435 NA | |
| IL_4U50_413 | 1/6/990:994, 1/6/1010:1014 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_4U50_414 | 1/6/1034:1036, 1/6/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_4U50_415 | 1/6/1041:1044, 1/6/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_4U50_416 | 1/6/1051:1053, 1/6/1066:1067 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_4U50_417 | 1/6/1111:1118, 1/6/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_4U50_418 | 1/6/1146:1147, 1/6/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_4U50_419 | 1/6/1149:1151, 1/6/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_4U50_420 | 1/6/1157:1160, 1/6/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_4U50_421 | 1/6/1173:1175, 1/6/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_4U50_422 | 1/6/1178:1179, 1/6/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_4U50_423 | 1/6/1213:1215, 1/6/1448:1450 | Isolated non-canonical cWW pair | geometric IL_4V88_446 NA | |
| IL_4U50_511 | 1/6/1224:1233, 1/6/1252:1259 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_4U50_425 | 1/6/1234:1236, 1/6/1249:1251 | No text annotation | homologous IL_4V88_448 NA | |
| IL_4U50_426 | 1/6/1268:1270, 1/6/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_4U50_427 | 1/6/1272:1276, 1/6/1436:1438 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_4U50_494 | 1/6/1272:1278, 1/6/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_4U50_428 | 1/6/1276:1278, 1/6/1430:1436 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_4U50_429 | 1/6/1280:1281, 1/6/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_4U50_430 | 1/6/1290:1292, 1/6/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_4U50_431 | 1/6/1306:1308, 1/6/1317:1318 | Minor groove platform | geometric IL_4V88_454 NA | |
| IL_4U50_432 | 1/6/1339:1342, 1/6/1383:1385 | Isolated non-canonical cWW pair | homologous IL_4V88_455 NA | |
| IL_4U50_512 | 1/6/1345:1348, 1/6/1377:1380 | No text annotation | homologous IL_8P9A_445 IL_78800.1 | |
| IL_4U50_434 | 1/6/1352:1354, 1/6/1369:1373 | Isolated non-canonical cWW pair | homologous IL_4V88_457 NA | |
| IL_4U50_435 | 1/6/1389:1391, 1/6/1407:1412 | Major groove platform; stack outside cWW | geometric IL_4V88_458 NA | |
| IL_4U50_436 | 1/6/1480:1487, 1/6/1519:1527 | No text annotation | homologous IL_4V88_459 NA | |
| IL_4U50_437 | 1/6/1488:1494, 1/6/1513:1518 | No text annotation | homologous IL_8P9A_449 IL_22564.1 | |
| IL_4U50_438 | 1/6/1495:1498, 1/6/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_4U50_439 | 1/6/1540:1545, 1/6/1566:1571 | No text annotation | geometric IL_4V88_462 NA | |
| IL_4U50_440 | 1/6/1636:1638, 1/6/1764:1767 | No text annotation | homologous IL_4V88_463 NA | |
| IL_4U50_441 | 1/6/1638:1641, 1/6/1760:1764 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4U50_442 | 1/6/1642:1644, 1/6/1757:1759 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_4U50_443 | 1/6/1644:1647, 1/6/1753:1757 | Non canonical cWW and near pair | geometric IL_4V88_466 NA | |
| IL_4U50_444 | 1/6/1650:1652, 1/6/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_4U50_445 | 1/6/1653:1656, 1/6/1744:1747 | Double sheared | geometric IL_4V88_468 NA | |
| IL_4U50_446 | 1/6/1656:1658, 1/6/1743:1744 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_4U50_447 | 1/6/1665:1667, 1/6/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_4U50_448 | 1/6/1669:1672, 1/6/1729:1732 | Double sheared | geometric IL_4V88_471 NA | |
| IL_4U50_449 | 1/6/1672:1674, 1/6/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
| IL_4U50_450 | 1/6/1675:1678, 1/6/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_4U50_451 | 1/6/1678:1682, 1/6/1719:1723 | Triple sheared | geometric IL_4V88_474 NA | |
| IL_4U50_452 | 1/6/1688:1690, 1/6/1711:1713 | Other IL | homologous IL_4V88_476 NA | |
| IL_4U50_453 | 1/7/15:16, 1/7/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_4U50_454 | 1/7/21:27, 1/7/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_4U50_455 | 1/7/28:29, 1/7/49:52 | Minor groove platform | homologous IL_5TBW_374 NA | |
| IL_4U50_456 | 1/7/29:30, 1/7/47:49 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_4U50_457 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_4U50_458 | 1/7/72:80, 1/7/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_4U50_459 | 1/7/84:87, 1/7/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_4U50_460 | 1/8/44:64, 1/8/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_4U50_461 | 1/8/64:66, 1/8/93:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_4U50_462 | 1/8/68:69, 1/8/89:91 | Single bulged U | geometric IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4U50_001 | No text annotation | ||
| IL_4U50_011 | Major groove platform with extra pair | ||
| IL_4U50_017 | Kink-turn related | ||
| IL_4U50_047 | No text annotation | ||
| IL_4U50_463 | No text annotation | ||
| IL_4U50_062 | No text annotation | ||
| IL_4U50_465 | No text annotation | ||
| IL_4U50_065 | Multiple bulged bases with near cWW | ||
| IL_4U50_081 | No text annotation | ||
| IL_4U50_467 | No text annotation | ||
| IL_4U50_469 | No text annotation | ||
| IL_4U50_120 | No text annotation | ||
| IL_4U50_121 | Tandem non-canonical cWW pairs | ||
| IL_4U50_145 | No text annotation | ||
| IL_4U50_158 | C-loop with extra cWW pair | ||
| IL_4U50_159 | No text annotation | ||
| IL_4U50_171 | No text annotation | ||
| IL_4U50_174 | Tandem non-canonical cWW pairs | ||
| IL_4U50_175 | Tandem non-canonical cWW pairs | ||
| IL_4U50_177 | No text annotation | ||
| IL_4U50_478 | Isolated non-canonical cWW pair | ||
| IL_4U50_188 | C-loop with extra cWW pair | ||
| IL_4U50_192 | No text annotation | ||
| IL_4U50_480 | No text annotation | ||
| IL_4U50_202 | No text annotation | ||
| IL_4U50_482 | No text annotation | ||
| IL_4U50_231 | No text annotation | ||
| IL_4U50_483 | No text annotation | ||
| IL_4U50_484 | No text annotation | ||
| IL_4U50_241 | Major groove platform with extra pair | ||
| IL_4U50_247 | No text annotation | ||
| IL_4U50_274 | Other IL | ||
| IL_4U50_293 | No text annotation | ||
| IL_4U50_296 | No text annotation | ||
| IL_4U50_304 | No text annotation | ||
| IL_4U50_349 | Tandem non-canonical cWW pairs | ||
| IL_4U50_388 | C-loop with extra cWW pair | ||
| IL_4U50_399 | No text annotation | ||
| IL_4U50_492 | Triple non-canonical cWW pairs | ||
| IL_4U50_493 | Isolated non-canonical cWW pair | ||
| IL_4U50_424 | No text annotation | ||
| IL_4U50_433 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4U50_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation | homologous J3_8P9A_042 J3_19664.1 | |
| J3_4U50_060 | 1/1/113:124, 1/1/144:158, 1/1/263:267 | No text annotation | ||
| J3_4U50_061 | 1/1/185:189, 1/1/205:214, 1/1/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
| J3_4U50_062 | 1/1/340:356, 1/1/363:368, 1/4/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_4U50_002 | 1/1/369:376, 1/1/403:404, 1/4/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_4U50_063 | 1/1/369:379, 1/1/390:404, 1/4/19:20 | No text annotation | homologous J3_8P9A_047 J3_92134.2 | |
| J3_4U50_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_4U50_004 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_4U50_005 | 1/1/828:831, 1/1/863:867, 1/1/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_4U50_006 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation | geometric J3_5TBW_006 NA | |
| J3_4U50_007 | 1/1/1230:1232, 1/1/1256:1262, 1/1/1277:1279 | No text annotation | homologous J3_5TBW_007 NA | |
| J3_4U50_008 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_4U50_009 | 1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_4U50_010 | 1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_4U50_066 | 1/1/1537:1542, 1/1/1551:1566, 1/1/1572:1584 | No text annotation | ||
| J3_4U50_093 | 1/1/1631:1632, 1/1/1641:1645, 1/1/1810:1811 | No text annotation | homologous J3_8P9A_087 J3_75962.2 | |
| J3_4U50_067 | 1/1/1654:1658, 1/1/1791:1792, 1/1/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_4U50_012 | 1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597 | No text annotation | homologous J3_5TBW_012 NA | |
| J3_4U50_068 | 1/1/2529:2533, 1/1/2546:2563, 1/1/2578:2581 | No text annotation | ||
| J3_4U50_069 | 1/1/2651:2653, 1/1/2754:2765, 1/1/2793:2798 | No text annotation | homologous J3_8P9A_061 J3_20992.1 | |
| J3_4U50_013 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_4U50_014 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_4U50_070 | 1/1/3171:3176, 1/1/3212:3220, 1/1/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_4U50_015 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_4U50_071 | 1/1/3298:3300, 1/1/3314:3320, 1/1/3387:3390 | No text annotation | geometric J3_5TBW_069 NA | |
| J3_4U50_016 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation | geometric J3_4V88_078 NA | |
| J3_4U50_072 | 1/2/41:48, 1/2/431:439, 1/2/464:466 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_4U50_073 | 1/2/213:228, 1/2/237:243, 1/2/250:252 | No text annotation | ||
| J3_4U50_017 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_4U50_074 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_4U50_018 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_4U50_019 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_4U50_020 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_4U50_021 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation | homologous J3_4V88_035 NA | |
| J3_4U50_094 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation | homologous J3_8P9A_077 J3_52655.4 | |
| J3_4U50_023 | 1/2/1180:1187, 1/2/1198:1209, 1/2/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_4U50_024 | 1/2/1215:1220, 1/2/1263:1267, 1/2/1442:1448 | No text annotation | homologous J3_4V88_038 NA | |
| J3_4U50_025 | 1/2/1283:1288, 1/2/1327:1332, 1/2/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_4U50_026 | 1/2/1293:1294, 1/2/1303:1306, 1/2/1318:1322 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_4U50_027 | 1/2/1336:1338, 1/2/1386:1389, 1/2/1412:1415 | No text annotation | homologous J3_4V88_040 NA | |
| J3_4U50_075 | 1/2/1336:1338, 1/2/1386:1391, 1/2/1407:1415 | No text annotation | homologous J3_8P9A_083 J3_88233.1 | |
| J3_4U50_028 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation | homologous J3_4V88_041 NA | |
| J3_4U50_076 | 1/3/9:14, 1/3/66:67, 1/3/111:112 | No text annotation | homologous J3_8C3A_059 NA | |
| J3_4U50_077 | 1/4/44:45, 1/4/58:64, 1/4/96:100 | No text annotation | homologous J3_8P9A_067 J3_35667.2 | |
| J3_4U50_030 | 1/5/113:123, 1/5/149:158, 1/5/263:267 | No text annotation | homologous J3_8P9A_042 J3_19664.1 | |
| J3_4U50_078 | 1/5/113:124, 1/5/144:158, 1/5/263:267 | No text annotation | ||
| J3_4U50_079 | 1/5/185:189, 1/5/205:214, 1/5/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
| J3_4U50_080 | 1/5/340:356, 1/5/363:368, 1/8/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_4U50_031 | 1/5/369:376, 1/5/403:404, 1/8/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_4U50_081 | 1/5/369:379, 1/5/390:404, 1/8/19:20 | No text annotation | homologous J3_8P9A_047 J3_92134.2 | |
| J3_4U50_032 | 1/5/502:503, 1/5/588:597, 1/5/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_4U50_033 | 1/5/814:820, 1/5/905:907, 1/5/923:926 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_4U50_034 | 1/5/829:831, 1/5/863:867, 1/5/892:895 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_4U50_035 | 1/5/986:987, 1/5/1062:1066, 1/5/1092:1098 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_4U50_036 | 1/5/1230:1232, 1/5/1256:1262, 1/5/1277:1279 | No text annotation | homologous J3_5TBW_007 NA | |
| J3_4U50_037 | 1/5/1479:1485, 1/5/1857:1859, 1/5/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_4U50_038 | 1/5/1488:1491, 1/5/1837:1843, 1/5/1852:1854 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_4U50_039 | 1/5/1526:1531, 1/5/1591:1595, 1/5/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_4U50_082 | 1/5/1537:1542, 1/5/1551:1560, 1/5/1579:1584 | No text annotation | ||
| J3_4U50_040 | 1/5/1631:1632, 1/5/1641:1645, 1/5/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_4U50_083 | 1/5/1654:1658, 1/5/1791:1792, 1/5/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_4U50_041 | 1/5/2432:2435, 1/5/2512:2517, 1/5/2590:2597 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_4U50_042 | 1/5/2529:2532, 1/5/2547:2563, 1/5/2578:2581 | No text annotation | homologous J3_8P9A_060 J3_28639.1 | |
| J3_4U50_084 | 1/5/2651:2653, 1/5/2754:2765, 1/5/2793:2798 | No text annotation | homologous J3_8P9A_061 J3_20992.1 | |
| J3_4U50_043 | 1/5/2664:2666, 1/5/2690:2692, 1/5/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_4U50_044 | 1/5/2886:2889, 1/5/2914:2916, 1/5/2930:2936 | No text annotation | homologous J3_8P9A_063 J3_62630.1 | |
| J3_4U50_085 | 1/5/3171:3176, 1/5/3212:3220, 1/5/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_4U50_045 | 1/5/3298:3300, 1/5/3314:3318, 1/5/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_4U50_046 | 1/6/41:42, 1/6/433:439, 1/6/464:466 | No text annotation | geometric J3_4V88_078 NA | |
| J3_4U50_086 | 1/6/41:48, 1/6/431:439, 1/6/464:466 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_4U50_087 | 1/6/213:230, 1/6/235:243, 1/6/250:252 | No text annotation | ||
| J3_4U50_047 | 1/6/633:635, 1/6/861:865, 1/6/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_4U50_088 | 1/6/633:635, 1/6/861:866, 1/6/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_4U50_048 | 1/6/760:763, 1/6/773:775, 1/6/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_4U50_049 | 1/6/881:884, 1/6/928:936, 1/6/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_4U50_050 | 1/6/1037:1039, 1/6/1079:1083, 1/6/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_4U50_051 | 1/6/1161:1164, 1/6/1581:1587, 1/6/1609:1616 | No text annotation | homologous J3_4V88_035 NA | |
| J3_4U50_052 | 1/6/1168:1171, 1/6/1468:1470, 1/6/1574:1577 | No text annotation | homologous J3_4V88_036 NA | |
| J3_4U50_053 | 1/6/1180:1187, 1/6/1198:1209, 1/6/1454:1458 | No text annotation | geometric J3_4V88_037 NA | |
| J3_4U50_054 | 1/6/1215:1220, 1/6/1263:1267, 1/6/1442:1448 | No text annotation | homologous J3_4V88_038 NA | |
| J3_4U50_055 | 1/6/1283:1288, 1/6/1327:1332, 1/6/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_4U50_056 | 1/6/1293:1294, 1/6/1303:1306, 1/6/1318:1322 | No text annotation | homologous J3_8P9A_081 J3_76043.3 | |
| J3_4U50_057 | 1/6/1336:1338, 1/6/1386:1389, 1/6/1412:1415 | No text annotation | homologous J3_4V88_040 NA | |
| J3_4U50_091 | 1/6/1336:1338, 1/6/1386:1391, 1/6/1407:1415 | No text annotation | homologous J3_8P9A_083 J3_88233.1 | |
| J3_4U50_058 | 1/6/1470:1474, 1/6/1533:1540, 1/6/1571:1574 | No text annotation | homologous J3_4V88_041 NA | |
| J3_4U50_059 | 1/7/9:14, 1/7/66:67, 1/7/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_4U50_092 | 1/8/44:45, 1/8/58:64, 1/8/96:100 | No text annotation | homologous J3_8P9A_067 J3_35667.2 | |
| J4_4U50_001 | 1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_4U50_002 | 1/1/185:189, 1/1/205:208, 1/1/212:214, 1/1/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_4U50_003 | 1/1/1451:1457, 1/1/1475:1476, 1/1/1877:1880, 1/1/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_87855.1 | |
| J4_4U50_004 | 1/1/1492:1496, 1/1/1520:1525, 1/1/1614:1615, 1/1/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_69051.6 | |
| J4_4U50_005 | 1/1/1674:1675, 1/1/1693:1694, 1/1/1752:1753, 1/1/1772:1773 | No text annotation | homologous J4_8P9A_016 J4_24280.2 | |
| J4_4U50_006 | 1/1/2130:2134, 1/1/2146:2150, 1/1/2186:2190, 1/1/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_4U50_007 | 1/1/2192:2194, 1/1/2248:2249, 1/1/2267:2276, 1/1/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_4U50_008 | 1/1/2654:2658, 1/1/2712:2716, 1/1/2740:2742, 1/1/2751:2753 | No text annotation | homologous J4_8P9A_019 J4_04930.6 | |
| J4_4U50_009 | 1/1/3010:3012, 1/1/3042:3043, 1/1/3098:3100, 1/1/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J4_4U50_010 | 1/2/99:107, 1/2/307:309, 1/2/357:361, 1/2/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_4U50_011 | 1/2/622:624, 1/2/975:980, 1/2/1021:1032, 1/2/1103:1104 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J4_4U50_012 | 1/5/112:113, 1/5/267:272, 1/5/293:299, 1/5/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_4U50_013 | 1/5/185:189, 1/5/205:208, 1/5/212:214, 1/5/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_4U50_014 | 1/5/1451:1457, 1/5/1475:1476, 1/5/1877:1880, 1/5/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_87855.1 | |
| J4_4U50_015 | 1/5/1492:1496, 1/5/1520:1525, 1/5/1614:1615, 1/5/1829:1836 | No text annotation | ||
| J4_4U50_016 | 1/5/1495:1496, 1/5/1520:1525, 1/5/1614:1615, 1/5/1829:1835 | No text annotation | ||
| J4_4U50_017 | 1/5/1674:1675, 1/5/1693:1694, 1/5/1752:1753, 1/5/1772:1773 | No text annotation | homologous J4_8P9A_016 J4_24280.2 | |
| J4_4U50_018 | 1/5/2130:2134, 1/5/2146:2150, 1/5/2186:2190, 1/5/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_4U50_019 | 1/5/2192:2194, 1/5/2248:2249, 1/5/2267:2276, 1/5/2310:2315 | No text annotation | homologous J4_8P9A_018 J4_93343.1 | |
| J4_4U50_020 | 1/5/2654:2658, 1/5/2712:2714, 1/5/2741:2742, 1/5/2751:2753 | No text annotation | ||
| J4_4U50_021 | 1/5/2654:2658, 1/5/2712:2716, 1/5/2740:2742, 1/5/2751:2753 | No text annotation | homologous J4_8P9A_019 J4_04930.6 | |
| J4_4U50_022 | 1/5/3010:3012, 1/5/3042:3043, 1/5/3098:3100, 1/5/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J4_4U50_023 | 1/6/99:107, 1/6/307:309, 1/6/357:361, 1/6/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_4U50_024 | 1/6/622:624, 1/6/975:980, 1/6/1021:1032, 1/6/1103:1104 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J5_4U50_001 | 1/1/20:22, 1/4/35:42, 1/4/102:107, 1/4/115:116, 1/4/137:139 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_4U50_002 | 1/1/658:663, 1/1/799:802, 1/1/941:944, 1/1/1375:1376, 1/1/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_4U50_003 | 1/1/675:678, 1/1/702:706, 1/1/713:721, 1/1/749:751, 1/1/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_4U50_004 | 1/1/1906:1914, 1/1/1938:1939, 1/1/2109:2110, 1/1/2114:2122, 1/1/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
| J5_4U50_005 | 1/1/2399:2406, 1/1/2815:2823, 1/1/2867:2876, 1/1/2951:2957, 1/1/2975:2980 | No text annotation | ||
| J5_4U50_006 | 1/1/2416:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2651, 1/1/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J5_4U50_007 | 1/2/31:35, 1/2/473:479, 1/2/509:516, 1/2/536:546, 1/2/592:595 | No text annotation | ||
| J5_4U50_008 | 1/2/54:57, 1/2/90:97, 1/2/386:388, 1/2/409:411, 1/2/422:426 | No text annotation | homologous J5_8P9A_017 J5_59910.6 | |
| J5_4U50_009 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:265, 1/2/289:293 | No text annotation | ||
| J5_4U50_010 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:267, 1/2/288:293 | No text annotation | ||
| J5_4U50_021 | 1/2/636:641, 1/2/693:698, 1/2/740:744, 1/2/807:817, 1/2/854:860 | No text annotation | ||
| J5_4U50_012 | 1/5/20:22, 1/8/35:42, 1/8/102:107, 1/8/115:116, 1/8/137:139 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_4U50_013 | 1/5/658:663, 1/5/799:802, 1/5/941:944, 1/5/1375:1376, 1/5/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_4U50_014 | 1/5/675:678, 1/5/702:706, 1/5/713:721, 1/5/749:751, 1/5/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_4U50_015 | 1/5/1906:1914, 1/5/1938:1939, 1/5/2109:2110, 1/5/2114:2122, 1/5/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
| J5_4U50_016 | 1/5/2399:2406, 1/5/2815:2823, 1/5/2867:2876, 1/5/2951:2957, 1/5/2975:2980 | No text annotation | ||
| J5_4U50_017 | 1/5/2416:2419, 1/5/2611:2614, 1/5/2627:2628, 1/5/2650:2651, 1/5/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J5_4U50_018 | 1/6/31:35, 1/6/473:479, 1/6/509:516, 1/6/536:546, 1/6/592:595 | No text annotation | ||
| J5_4U50_019 | 1/6/54:57, 1/6/90:97, 1/6/386:388, 1/6/409:411, 1/6/422:426 | No text annotation | homologous J5_8P9A_017 J5_59910.6 | |
| J5_4U50_020 | 1/6/636:641, 1/6/693:698, 1/6/740:744, 1/6/807:817, 1/6/854:860 | No text annotation | ||
| J6_4U50_001 | 1/1/22:27, 1/1/58:68, 1/1/75:79, 1/1/106:110, 1/1/321:331, 1/4/32:35 | No text annotation | ||
| J6_4U50_002 | 1/1/2416:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2653, 1/1/2754:2765, 1/1/2793:2804 | No text annotation | ||
| J6_4U50_003 | 1/5/22:27, 1/5/58:68, 1/5/75:79, 1/5/106:110, 1/5/321:331, 1/8/32:35 | No text annotation | ||
| J6_4U50_004 | 1/5/2416:2419, 1/5/2611:2614, 1/5/2627:2628, 1/5/2650:2653, 1/5/2754:2765, 1/5/2793:2804 | No text annotation | ||
| J7_4U50_001 | 1/1/949:954, 1/1/967:968, 1/1/1114:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation | ||
| J7_4U50_002 | 1/5/949:954, 1/5/967:968, 1/5/1114:1117, 1/5/1141:1146, 1/5/1157:1161, 1/5/1338:1339, 1/5/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4U50_064 | No text annotation | ||
| J3_4U50_065 | No text annotation | ||
| J3_4U50_011 | No text annotation | ||
| J3_4U50_022 | No text annotation | ||
| J3_4U50_029 | No text annotation | ||
| J3_4U50_089 | No text annotation | ||
| J3_4U50_090 | No text annotation | ||
| J5_4U50_011 | No text annotation |
Coloring options: