6YEF Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6YEF_001 | 1/A/67:74 | No text annotation Not in a motif group | geometric HL_4WF9_001 HL_86769.3 | |
| HL_6YEF_002 | 1/A/86:96 | No text annotation Not in a motif group | homologous HL_7A0S_002 HL_05727.1 | |
| HL_6YEF_003 | 1/A/122:127 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_75407.1 | |
| HL_6YEF_004 | 1/A/136:143 | No text annotation Not in a motif group | homologous HL_4WF9_004 HL_84085.2 | |
| HL_6YEF_005 | 1/A/158:170 | No text annotation Not in a motif group | ||
| HL_6YEF_006 | 1/A/197:204 | No text annotation Not in a motif group | geometric HL_7RQB_006 HL_06192.2 | |
| HL_6YEF_008 | 1/A/249:255 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_6YEF_010 | 1/A/348:355 | No text annotation Not in a motif group | homologous HL_7A0S_010 HL_89380.2 | |
| HL_6YEF_011 | 1/A/362:366 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_6YEF_012 | 1/A/370:378 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_6YEF_013 | 1/A/427:439 | No text annotation Not in a motif group | ||
| HL_6YEF_014 | 1/A/456:463 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_6YEF_015 | 1/A/508:513 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_6YEF_016 | 1/A/533:538 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_6YEF_017 | 1/A/587:594 | No text annotation Not in a motif group | homologous HL_4WF9_017 HL_50318.1 | |
| HL_6YEF_018 | 1/A/609:618 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_018 HL_89380.2 | |
| HL_6YEF_019 | 1/A/655:661 | GNRA Not in a motif group | geometric HL_4FRG_002 HL_42097.1 | |
| HL_6YEF_020 | 1/A/674:679 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_6YEF_023 | 1/A/789:798 | No text annotation Not in a motif group | homologous HL_7A0S_022 HL_39334.6 | |
| HL_6YEF_024 | 1/A/823:831 | No text annotation Not in a motif group | ||
| HL_6YEF_025 | 1/A/871:876 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_6YEF_027 | 1/A/999:1006 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_6YEF_028 | 1/A/1022:1029 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_6YEF_031 | 1/A/1260:1265 | No text annotation Not in a motif group | homologous HL_4WF9_031 HL_87030.2 | |
| HL_6YEF_032 | 1/A/1318:1326 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_032 HL_89380.2 | |
| HL_6YEF_033 | 1/A/1361:1367 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_6YEF_034 | 1/A/1400:1405 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_6YEF_035 | 1/A/1426:1435 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_6YEF_037 | 1/A/1612:1615 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_6YEF_038 | 1/A/1656:1663 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_6YEF_039 | 1/A/1673:1681 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_6YEF_040 | 1/A/1735:1740 | UNCG Not in a motif group | geometric HL_4V9F_044 HL_03562.2 | |
| HL_6YEF_041 | 1/A/1762:1767 | No text annotation Not in a motif group | geometric HL_5J7L_179 HL_42097.1 | |
| HL_6YEF_042 | 1/A/1779:1783 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_6YEF_043 | 1/A/1804:1814 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_6YEF_044 | 1/A/1833:1838 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_6YEF_047 | 1/A/1976:1984 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_6YEF_048 | 1/A/2054:2063 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_6YEF_051 | 1/A/2275:2283 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_6YEF_052 | 1/A/2291:2303 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_6YEF_054 | 1/A/2351:2358 | No text annotation Not in a motif group | homologous HL_4WF9_052 HL_12078.2 | |
| HL_6YEF_055 | 1/A/2382:2389 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_6YEF_056 | 1/A/2401:2406 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_6YEF_057 | 1/A/2431:2440 | No text annotation Not in a motif group | homologous HL_4WF9_055 HL_30784.2 | |
| HL_6YEF_058 | 1/A/2498:2506 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_6YEF_059 | 1/A/2555:2562 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_6YEF_060 | 1/A/2578:2584 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_6YEF_061 | 1/A/2621:2626 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_6YEF_062 | 1/A/2685:2690 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_6YEF_063 | 1/A/2728:2733 | Ribsomal LSU H95 Not in a motif group | homologous HL_4WF9_061 HL_46680.1 | |
| HL_6YEF_064 | 1/A/2772:2786 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_6YEF_066 | 1/A/2839:2847 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_6YEF_067 | 1/A/2876:2881 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_42097.1 | |
| HL_6YEF_068 | 1/B/36:42 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_87939.1 | |
| HL_6YEF_069 | 1/B/83:88 | No text annotation Not in a motif group | geometric HL_7RQB_007 HL_02862.2 | |
| HL_6YEF_070 | 1/a/13:23 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_6YEF_071 | 1/a/72:97 | No text annotation Not in a motif group | ||
| HL_6YEF_072 | 1/a/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_6YEF_073 | 1/a/193:198 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6YEF_074 | 1/a/217:223 | No text annotation Not in a motif group | homologous HL_6CZR_076 HL_34168.2 | |
| HL_6YEF_075 | 1/a/267:275 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_6YEF_076 | 1/a/304:309 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_6YEF_077 | 1/a/328:341 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_6YEF_078 | 1/a/350:355 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_6YEF_079 | 1/a/387:392 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_6YEF_080 | 1/a/427:432 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_6YEF_081 | 1/a/454:496 | No text annotation Not in a motif group | ||
| HL_6YEF_082 | 1/a/529:536 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
| HL_6YEF_083 | 1/a/625:631 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_6YEF_084 | 1/a/697:706 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_6YEF_085 | 1/a/734:739 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_6YEF_086 | 1/a/794:804 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_6YEF_087 | 1/a/848:855 | No text annotation Not in a motif group | geometric HL_5J7L_014 HL_26881.1 | |
| HL_6YEF_088 | 1/a/871:876 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_6YEF_089 | 1/a/906:911 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_6YEF_090 | 1/a/972:981 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_6YEF_091 | 1/a/1021:1026 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_6YEF_092 | 1/a/1038:1043 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
| HL_6YEF_093 | 1/a/1087:1092 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_6YEF_094 | 1/a/1100:1107 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_6YEF_095 | 1/a/1143:1152 | No text annotation Not in a motif group | ||
| HL_6YEF_096 | 1/a/1175:1181 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_90617.2 | |
| HL_6YEF_097 | 1/a/1275:1280 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_6YEF_098 | 1/a/1324:1333 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_6YEF_099 | 1/a/1366:1376 | No text annotation Not in a motif group | homologous HL_5J7L_029 HL_96366.1 | |
| HL_6YEF_100 | 1/a/1460:1464 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_6YEF_101 | 1/a/1526:1531 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_6YEF_102 | 1/x/13:22 | No text annotation Not in a motif group | homologous HL_4TUE_033 HL_25462.2 | |
| HL_6YEF_103 | 1/x/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
| HL_6YEF_104 | 1/x/53:61 | No text annotation Not in a motif group | homologous HL_5L4O_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6YEF_007 | No text annotation | ||
| HL_6YEF_009 | No text annotation | ||
| HL_6YEF_021 | No text annotation | ||
| HL_6YEF_022 | No text annotation | ||
| HL_6YEF_026 | No text annotation | ||
| HL_6YEF_029 | No text annotation | ||
| HL_6YEF_030 | No text annotation | ||
| HL_6YEF_036 | No text annotation | ||
| HL_6YEF_045 | No text annotation | ||
| HL_6YEF_046 | No text annotation | ||
| HL_6YEF_049 | No text annotation | ||
| HL_6YEF_050 | No text annotation | ||
| HL_6YEF_053 | No text annotation | ||
| HL_6YEF_065 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6YEF_001 | 1/A/24:30, 1/A/555:561 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_4WF9_001 IL_66414.6 | |
| IL_6YEF_002 | 1/A/36:37, 1/A/488:490 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_6YEF_003 | 1/A/43:44, 1/A/480:482 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_6YEF_004 | 1/A/81:85, 1/A/97:104 | Kink-turn Not in a motif group | homologous IL_4WF9_004 IL_45067.2 | |
| IL_6YEF_005 | 1/A/152:153, 1/A/175:177 | Single bulged A Not in a motif group | homologous IL_4WF9_006 IL_37497.2 | |
| IL_6YEF_006 | 1/A/186:187, 1/A/215:217 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_6YEF_007 | 1/A/190:197, 1/A/204:212 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_008 IL_35728.2 | |
| IL_6YEF_008 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_009 IL_04346.7 | |
| IL_6YEF_009 | 1/A/305:306, 1/A/409:412 | No text annotation Not in a motif group | ||
| IL_6YEF_011 | 1/A/319:327, 1/A/399:400 | No text annotation Not in a motif group | ||
| IL_6YEF_012 | 1/A/336:338, 1/A/386:390 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_6YEF_013 | 1/A/527:530, 1/A/541:554 | No text annotation Not in a motif group | geometric IL_4WF9_015 IL_60992.6 | |
| IL_6YEF_014 | 1/A/581:584, 1/A/597:600 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_6YEF_015 | 1/A/607:609, 1/A/618:620 | No text annotation Not in a motif group | geometric IL_4WF9_017 IL_95997.1 | |
| IL_6YEF_016 | 1/A/638:640, 1/A/705:707 | No text annotation Not in a motif group | homologous IL_4WF9_018 IL_51629.2 | |
| IL_6YEF_017 | 1/A/649:653, 1/A/663:667 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_6YEF_018 | 1/A/717:719, 1/A/851:853 | No text annotation Not in a motif group | homologous IL_4WF9_020 IL_95997.1 | |
| IL_6YEF_019 | 1/A/719:723, 1/A/844:851 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_5J7L_260 IL_17470.6 | |
| IL_6YEF_020 | 1/A/742:743, 1/A/808:810 | Single bulged A Not in a motif group | geometric IL_4WF9_022 IL_37497.2 | |
| IL_6YEF_021 | 1/A/747:748, 1/A/773:775 | Single bulged G Not in a motif group | geometric IL_4WF9_023 IL_00225.2 | |
| IL_6YEF_022 | 1/A/748:752, 1/A/769:773 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_6YEF_023 | 1/A/783:785, 1/A/802:803 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.1 | |
| IL_6YEF_024 | 1/A/820:822, 1/A/832:836 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_6YEF_025 | 1/A/882:883, 1/A/984:986 | Single stack bend Not in a motif group | homologous IL_5J7L_266 IL_92001.1 | |
| IL_6YEF_026 | 1/A/889:893, 1/A/975:978 | No text annotation Not in a motif group | homologous IL_4WF9_029 IL_06300.1 | |
| IL_6YEF_027 | 1/A/896:897, 1/A/970:972 | Single bulged U Not in a motif group | homologous IL_4WF9_030 IL_83039.13 | |
| IL_6YEF_028 | 1/A/901:907, 1/A/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_4WF9_031 IL_93830.3 | |
| IL_6YEF_029 | 1/A/907:908, 1/A/958:960 | Minor groove platform Not in a motif group | homologous IL_4WF9_032 IL_42622.2 | |
| IL_6YEF_030 | 1/A/909:913, 1/A/954:957 | C-loop Not in a motif group | homologous IL_4WF9_033 IL_02509.1 | |
| IL_6YEF_031 | 1/A/920:925, 1/A/942:947 | No text annotation Not in a motif group | ||
| IL_6YEF_032 | 1/A/1038:1040, 1/A/1203:1204 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_6YEF_033 | 1/A/1042:1046, 1/A/1197:1201 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
| IL_6YEF_034 | 1/A/1048:1055, 1/A/1194:1195 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4WF9_037 IL_15861.7 | |
| IL_6YEF_035 | 1/A/1055:1057, 1/A/1193:1194 | Single bulged U Not in a motif group | geometric IL_4WF9_038 IL_83039.13 | |
| IL_6YEF_036 | 1/A/1062:1068, 1/A/1184:1188 | No text annotation Not in a motif group | homologous IL_7RQB_039 IL_57188.3 | |
| IL_6YEF_037 | 1/A/1068:1074, 1/A/1168:1184 | No text annotation Not in a motif group | geometric IL_4WF9_040 IL_50715.1 | |
| IL_6YEF_038 | 1/A/1075:1078, 1/A/1165:1167 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_6YEF_039 | 1/A/1081:1083, 1/A/1160:1162 | No text annotation Not in a motif group | homologous IL_4WF9_042 IL_95997.1 | |
| IL_6YEF_041 | 1/A/1235:1237, 1/A/1285:1288 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_6YEF_042 | 1/A/1243:1245, 1/A/1277:1279 | Isolated cWH basepair Not in a motif group | homologous IL_4WF9_045 IL_51629.2 | |
| IL_6YEF_043 | 1/A/1246:1253, 1/A/1272:1276 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_6YEF_044 | 1/A/1257:1259, 1/A/1266:1268 | Intercalated cWW Not in a motif group | homologous IL_4WF9_047 IL_82842.2 | |
| IL_6YEF_045 | 1/A/1300:1307, 1/A/2038:2044 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_048 IL_04346.7 | |
| IL_6YEF_046 | 1/A/1347:1350, 1/A/1647:1648 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_6YEF_047 | 1/A/1356:1360, 1/A/1368:1370 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_4WF9_050 IL_37712.2 | |
| IL_6YEF_048 | 1/A/1388:1392, 1/A/1413:1417 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_6YEF_049 | 1/A/1394:1398, 1/A/1407:1411 | tSH-tHW-tHS Not in a motif group | homologous IL_4WF9_052 IL_17136.1 | |
| IL_6YEF_051 | 1/A/1461:1465, 1/A/1624:1627 | Other IL Not in a motif group | homologous IL_4WF9_054 IL_04059.1 | |
| IL_6YEF_052 | 1/A/1476:1479, 1/A/1604:1608 | No text annotation Not in a motif group | ||
| IL_6YEF_053 | 1/A/1480:1484, 1/A/1598:1603 | tSH-tHW-tHS Not in a motif group | geometric IL_2QWY_007 IL_38862.1 | |
| IL_6YEF_056 | 1/A/1695:1700, 1/A/2031:2033 | No text annotation Not in a motif group | homologous IL_4WF9_062 IL_12566.2 | |
| IL_6YEF_057 | 1/A/1707:1709, 1/A/2022:2024 | Isolated tWW turn Not in a motif group | homologous IL_7A0S_060 IL_54997.7 | |
| IL_6YEF_058 | 1/A/1710:1713, 1/A/2020:2021 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_064 IL_50694.2 | |
| IL_6YEF_059 | 1/A/1713:1718, 1/A/2017:2020 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_82842.2 | |
| IL_6YEF_060 | 1/A/1730:1735, 1/A/1740:1746 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_6YEF_061 | 1/A/1757:1759, 1/A/1770:1772 | Isolated cWH basepair Not in a motif group | geometric IL_6IA2_003 IL_51629.2 | |
| IL_6YEF_062 | 1/A/1797:1798, 1/A/2007:2009 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.2 | |
| IL_6YEF_063 | 1/A/1825:1831, 1/A/1840:1848 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_6YEF_064 | 1/A/1864:1867, 1/A/1929:1930 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_6YEF_065 | 1/A/1868:1869, 1/A/1925:1928 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_6YEF_070 | 1/A/1960:1961, 1/A/1991:1994 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_59677.2 | |
| IL_6YEF_071 | 1/A/1961:1972, 1/A/1988:1991 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_6YEF_072 | 1/A/2077:2079, 1/A/2644:2645 | Major groove platform Not in a motif group | homologous IL_7A0S_073 IL_27635.1 | |
| IL_6YEF_073 | 1/A/2081:2083, 1/A/2639:2642 | No text annotation Not in a motif group | ||
| IL_6YEF_074 | 1/A/2091:2093, 1/A/2471:2473 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_6YEF_075 | 1/A/2094:2096, 1/A/2469:2470 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_6YEF_076 | 1/A/2097:2098, 1/A/2465:2468 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_6YEF_077 | 1/A/2108:2110, 1/A/2263:2266 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_082 IL_38958.7 | |
| IL_6YEF_080 | 1/A/2229:2231, 1/A/2247:2248 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_00225.2 | |
| IL_6YEF_081 | 1/A/2324:2326, 1/A/2344:2348 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_080 IL_38958.7 | |
| IL_6YEF_082 | 1/A/2377:2380, 1/A/2391:2394 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_6YEF_083 | 1/A/2427:2430, 1/A/2441:2443 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_82068.2 | |
| IL_6YEF_084 | 1/A/2480:2482, 1/A/2523:2527 | No text annotation Not in a motif group | homologous IL_5J7L_335 NA | |
| IL_6YEF_085 | 1/A/2484:2486, 1/A/2520:2521 | Major groove platform Not in a motif group | homologous IL_7A0S_085 IL_27635.1 | |
| IL_6YEF_086 | 1/A/2486:2488, 1/A/2516:2520 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
| IL_6YEF_087 | 1/A/2493:2497, 1/A/2507:2511 | Triple sheared Not in a motif group | homologous IL_4WF9_093 IL_56467.8 | |
| IL_6YEF_088 | 1/A/2534:2535, 1/A/2607:2609 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_6YEF_089 | 1/A/2537:2539, 1/A/2601:2605 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_095 IL_90933.2 | |
| IL_6YEF_090 | 1/A/2539:2540, 1/A/2598:2601 | No text annotation Not in a motif group | geometric IL_4WF9_096 IL_71530.2 | |
| IL_6YEF_091 | 1/A/2549:2550, 1/A/2567:2570 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_6YEF_092 | 1/A/2618:2619, 1/A/2628:2630 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_6YEF_093 | 1/A/2663:2667, 1/A/2801:2809 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_6YEF_094 | 1/A/2679:2685, 1/A/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
| IL_6YEF_095 | 1/A/2707:2711, 1/A/2752:2754 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_6YEF_096 | 1/A/2714:2718, 1/A/2745:2749 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_6YEF_097 | 1/A/2722:2723, 1/A/2738:2741 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_6YEF_098 | 1/A/2764:2769, 1/A/2789:2794 | UAA/GAN with extra cWW Not in a motif group | homologous IL_4WF9_104 IL_49767.5 | |
| IL_6YEF_099 | 1/A/2858:2859, 1/A/2898:2900 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_16396.2 | |
| IL_6YEF_100 | 1/A/2863:2865, 1/A/2891:2894 | No text annotation Not in a motif group | homologous IL_4WF9_107 IL_02284.5 | |
| IL_6YEF_101 | 1/A/2867:2872, 1/A/2885:2889 | No text annotation Not in a motif group | homologous IL_4WF9_108 IL_83162.5 | |
| IL_6YEF_102 | 1/B/15:16, 1/B/63:65 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.2 | |
| IL_6YEF_103 | 1/B/21:27, 1/B/53:58 | No text annotation Not in a motif group | ||
| IL_6YEF_104 | 1/B/28:30, 1/B/48:52 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_6YEF_105 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform Not in a motif group | geometric IL_5NS3_002 IL_58103.6 | |
| IL_6YEF_106 | 1/B/69:77, 1/B/94:102 | Bacterial 5S Loop E Not in a motif group | homologous IL_7A0S_106 IL_56455.3 | |
| IL_6YEF_107 | 1/B/78:80, 1/B/91:93 | No text annotation Not in a motif group | homologous IL_7A0S_107 IL_51629.2 | |
| IL_6YEF_108 | 1/a/31:33, 1/a/560:561 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_6YEF_109 | 1/a/45:46, 1/a/404:406 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_6YEF_110 | 1/a/48:53, 1/a/367:369 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_6YEF_111 | 1/a/55:57, 1/a/364:365 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_93353.1 | |
| IL_6YEF_112 | 1/a/64:67, 1/a/102:103 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_6YEF_113 | 1/a/68:70, 1/a/99:101 | No text annotation Not in a motif group | homologous IL_6CZR_118 IL_95997.1 | |
| IL_6YEF_114 | 1/a/128:131, 1/a/239:240 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_6YEF_115 | 1/a/132:136, 1/a/235:238 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_6YEF_116 | 1/a/147:155, 1/a/166:175 | No text annotation Not in a motif group | ||
| IL_6YEF_117 | 1/a/189:191, 1/a/201:202 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6YEF_118 | 1/a/191:192, 1/a/199:201 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6YEF_119 | 1/a/250:255, 1/a/285:292 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_6YEF_120 | 1/a/257:261, 1/a/281:283 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
| IL_6YEF_121 | 1/a/300:301, 1/a/312:316 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_6YEF_122 | 1/a/375:377, 1/a/400:401 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
| IL_6YEF_123 | 1/a/379:383, 1/a/397:398 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_6YEF_124 | 1/a/383:384, 1/a/395:397 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6YEF_125 | 1/a/417:424, 1/a/435:441 | No text annotation Not in a motif group | homologous IL_5J7L_020 IL_28026.1 | |
| IL_6YEF_126 | 1/a/512:519, 1/a/548:549 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_6YEF_127 | 1/a/523:529, 1/a/536:544 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_6YEF_128 | 1/a/577:583, 1/a/889:890 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_6YEF_129 | 1/a/588:592, 1/a/765:769 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_6YEF_130 | 1/a/602:604, 1/a/652:653 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_6YEF_131 | 1/a/605:606, 1/a/648:651 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_6YEF_132 | 1/a/612:613, 1/a/640:642 | No text annotation Not in a motif group | ||
| IL_6YEF_133 | 1/a/613:620, 1/a/636:640 | No text annotation Not in a motif group | ||
| IL_6YEF_134 | 1/a/662:664, 1/a/758:762 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_6YEF_135 | 1/a/664:666, 1/a/755:758 | No text annotation Not in a motif group | geometric IL_6CZR_136 IL_05564.2 | |
| IL_6YEF_136 | 1/a/670:674, 1/a/748:751 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_6YEF_137 | 1/a/681:686, 1/a/720:725 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.1 | |
| IL_6YEF_138 | 1/a/691:696, 1/a/707:715 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_6YEF_139 | 1/a/782:787, 1/a/811:813 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_6YEF_140 | 1/a/787:791, 1/a/807:811 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_6YEF_141 | 1/a/896:903, 1/a/914:919 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_6YEF_142 | 1/a/931:932, 1/a/1403:1405 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_6YEF_143 | 1/a/934:936, 1/a/1400:1401 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_6YEF_144 | 1/a/942:944, 1/a/1390:1394 | No text annotation Not in a motif group | ||
| IL_6YEF_145 | 1/a/962:963, 1/a/1236:1238 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_6YEF_146 | 1/a/1002:1009, 1/a/1050:1056 | No text annotation Not in a motif group | ||
| IL_6YEF_147 | 1/a/1059:1061, 1/a/1218:1219 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_6YEF_148 | 1/a/1062:1068, 1/a/1213:1217 | No text annotation Not in a motif group | ||
| IL_6YEF_149 | 1/a/1068:1069, 1/a/1209:1213 | Minor groove platform Not in a motif group | geometric IL_5J7L_048 IL_93353.1 | |
| IL_6YEF_150 | 1/a/1071:1072, 1/a/1205:1207 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
| IL_6YEF_151 | 1/a/1072:1074, 1/a/1203:1205 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_6YEF_152 | 1/a/1135:1138, 1/a/1155:1159 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.6 | |
| IL_6YEF_153 | 1/a/1140:1143, 1/a/1152:1153 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_6YEF_154 | 1/a/1168:1171, 1/a/1185:1191 | No text annotation Not in a motif group | geometric IL_4LFB_050 IL_42032.1 | |
| IL_6YEF_155 | 1/a/1257:1263, 1/a/1294:1300 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_6YEF_156 | 1/a/1265:1268, 1/a/1287:1292 | No text annotation Not in a motif group | ||
| IL_6YEF_157 | 1/a/1269:1273, 1/a/1282:1286 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_6YEF_158 | 1/a/1313:1318, 1/a/1339:1344 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_6YEF_159 | 1/a/1409:1411, 1/a/1512:1515 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_6YEF_160 | 1/a/1411:1414, 1/a/1508:1512 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6YEF_161 | 1/a/1415:1417, 1/a/1505:1507 | CC cWW Not in a motif group | geometric IL_4E59_001 IL_95997.1 | |
| IL_6YEF_162 | 1/a/1417:1419, 1/a/1502:1505 | No text annotation Not in a motif group | ||
| IL_6YEF_163 | 1/a/1422:1424, 1/a/1497:1499 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_6YEF_164 | 1/a/1426:1429, 1/a/1492:1495 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_6YEF_165 | 1/a/1434:1437, 1/a/1484:1487 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_100 IL_30621.2 | |
| IL_6YEF_166 | 1/a/1440:1445, 1/a/1477:1481 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_6YEF_167 | 1/a/1445:1447, 1/a/1475:1477 | No text annotation Not in a motif group | geometric IL_6CZR_171 IL_95997.1 | |
| IL_6YEF_168 | 1/a/1450:1453, 1/a/1470:1472 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 IL_38958.7 | |
| IL_6YEF_169 | 1/a/1455:1458, 1/a/1466:1468 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6YEF_010 | No text annotation | ||
| IL_6YEF_040 | Kink-turn | ||
| IL_6YEF_050 | No text annotation | ||
| IL_6YEF_054 | No text annotation | ||
| IL_6YEF_055 | Single bulged A | ||
| IL_6YEF_066 | Major groove minor groove platform; mini C-loop | ||
| IL_6YEF_067 | UAA/GAN with extra pair | ||
| IL_6YEF_068 | Triple sheared | ||
| IL_6YEF_069 | UAA/GAN related | ||
| IL_6YEF_078 | No text annotation | ||
| IL_6YEF_079 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6YEF_001 | 1/A/30:31, 1/A/520:527, 1/A/554:555 | No text annotation Not in a motif group | homologous J3_5J7L_036 NA | |
| J3_6YEF_002 | 1/A/56:67, 1/A/74:76, 1/A/109:113 | No text annotation Not in a motif group | ||
| J3_6YEF_003 | 1/A/272:276, 1/A/295:302, 1/A/415:416 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_6YEF_004 | 1/A/728:734, 1/A/818:820, 1/A/836:839 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_6YEF_005 | 1/A/743:745, 1/A/777:781, 1/A/805:808 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_6YEF_006 | 1/A/1335:1340, 1/A/1669:1671, 1/A/1683:1686 | No text annotation Not in a motif group | homologous J3_4WF9_004 NA | |
| J3_6YEF_007 | 1/A/1342:1346, 1/A/1649:1655, 1/A/1664:1667 | No text annotation Not in a motif group | homologous J3_4WF9_005 NA | |
| J3_6YEF_008 | 1/A/2118:2120, 1/A/2223:2228, 1/A/2249:2255 | No text annotation Not in a motif group | homologous J3_4WF9_007 NA | |
| J3_6YEF_009 | 1/A/2322:2324, 1/A/2348:2350, 1/A/2359:2364 | No text annotation Not in a motif group | homologous J3_4WF9_008 NA | |
| J3_6YEF_010 | 1/A/2544:2547, 1/A/2572:2574, 1/A/2588:2594 | No text annotation Not in a motif group | homologous J3_4WF9_009 NA | |
| J3_6YEF_011 | 1/A/2816:2817, 1/A/2826:2831, 1/A/2909:2913 | No text annotation Not in a motif group | homologous J3_7RQB_013 NA | |
| J3_6YEF_012 | 1/A/2834:2835, 1/A/2851:2856, 1/A/2902:2906 | No text annotation Not in a motif group | homologous J3_7A0S_013 NA | |
| J3_6YEF_013 | 1/B/9:14, 1/B/66:68, 1/B/103:106 | No text annotation Not in a motif group | ||
| J3_6YEF_014 | 1/a/47:48, 1/a/369:375, 1/a/401:403 | No text annotation Not in a motif group | ||
| J3_6YEF_015 | 1/a/594:596, 1/a/659:662, 1/a/762:763 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_6YEF_016 | 1/a/680:681, 1/a/725:733, 1/a/740:742 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
| J3_6YEF_017 | 1/a/834:838, 1/a/865:870, 1/a/877:883 | No text annotation Not in a motif group | ||
| J3_6YEF_018 | 1/a/952:955, 1/a/1245:1247, 1/a/1347:1350 | No text annotation Not in a motif group | ||
| J3_6YEF_019 | 1/a/964:971, 1/a/982:993, 1/a/1231:1235 | No text annotation Not in a motif group | ||
| J3_6YEF_020 | 1/a/999:1002, 1/a/1056:1058, 1/a/1220:1225 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_6YEF_021 | 1/a/1009:1017, 1/a/1030:1037, 1/a/1044:1050 | No text annotation Not in a motif group | ||
| J3_6YEF_022 | 1/a/1074:1079, 1/a/1118:1124, 1/a/1197:1203 | No text annotation Not in a motif group | ||
| J3_6YEF_023 | 1/a/1084:1085, 1/a/1094:1098, 1/a/1109:1113 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_6YEF_024 | 1/a/1127:1129, 1/a/1165:1168, 1/a/1191:1194 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_6YEF_025 | 1/a/1247:1251, 1/a/1306:1313, 1/a/1344:1347 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA |
Problematic loops
No problematic loops
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