5NDW Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5NDW_001 | 1/1/38:45 | No text annotation Not in a motif group | geometric HL_5TBW_001 HL_06192.2 | |
| HL_5NDW_002 | 1/1/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
| HL_5NDW_003 | 1/1/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_5NDW_004 | 1/1/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_98426.1 | |
| HL_5NDW_005 | 1/1/194:201 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_89380.2 | |
| HL_5NDW_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_5NDW_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_5NDW_008 | 1/1/278:287 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_5NDW_010 | 1/1/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.1 | |
| HL_5NDW_011 | 1/1/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.1 | |
| HL_5NDW_012 | 1/1/543:548 | No text annotation Not in a motif group | ||
| HL_5NDW_013 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_5NDW_014 | 1/1/640:649 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_89380.2 | |
| HL_5NDW_015 | 1/1/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_5NDW_016 | 1/1/707:712 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_42097.1 | |
| HL_5NDW_017 | 1/1/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_5NDW_022 | 1/1/958:963 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_94803.1 | |
| HL_5NDW_025 | 1/1/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_5NDW_026 | 1/1/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_5NDW_029 | 1/1/1403:1408 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_42097.1 | |
| HL_5NDW_061 | 1/1/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_5NDW_062 | 1/1/2897:2904 | No text annotation Not in a motif group | homologous HL_8C3A_063 HL_88526.2 | |
| HL_5NDW_063 | 1/1/2920:2926 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_5NDW_065 | 1/1/3025:3030 | GNRA Not in a motif group | homologous HL_5TBW_065 HL_42097.1 | |
| HL_5NDW_066 | 1/1/3068:3073 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_46680.1 | |
| HL_5NDW_067 | 1/1/3110:3124 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.7 | |
| HL_5NDW_068 | 1/1/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
| HL_5NDW_069 | 1/1/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_5NDW_070 | 1/1/3303:3311 | No text annotation Not in a motif group | homologous HL_5TBW_070 HL_27930.1 | |
| HL_5NDW_071 | 1/1/3350:3353 | No text annotation Not in a motif group | homologous HL_5TBW_071 HL_53837.1 | |
| HL_5NDW_073 | 1/2/70:81 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_5NDW_074 | 1/2/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_5NDW_075 | 1/2/190:195 | No text annotation Not in a motif group | homologous HL_4V88_189 HL_77805.2 | |
| HL_5NDW_077 | 1/2/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_5NDW_078 | 1/2/276:279 | No text annotation Not in a motif group | homologous HL_4V88_192 HL_53837.1 | |
| HL_5NDW_079 | 1/2/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_5NDW_080 | 1/2/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_5NDW_081 | 1/2/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_5NDW_082 | 1/2/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_5NDW_083 | 1/2/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_5NDW_085 | 1/2/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_5NDW_092 | 1/2/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_5NDW_094 | 1/2/1055:1064 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_5NDW_095 | 1/2/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_5NDW_105 | 1/2/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_5NDW_108 | 1/3/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_5NDW_109 | 1/3/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_5NDW_110 | 1/4/47:56 | No text annotation Not in a motif group | geometric HL_7A0S_001 HL_99167.1 | |
| HL_5NDW_112 | 1/4/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_5NDW_113 | 1/4/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 | |
| HL_5NDW_114 | 1/5/38:45 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.2 | |
| HL_5NDW_115 | 1/5/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
| HL_5NDW_116 | 1/5/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_5NDW_117 | 1/5/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_98426.1 | |
| HL_5NDW_118 | 1/5/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_5NDW_119 | 1/5/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_5NDW_120 | 1/5/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_5NDW_121 | 1/5/278:287 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_5NDW_122 | 1/5/303:312 | No text annotation Not in a motif group | homologous HL_5TBW_009 HL_12078.2 | |
| HL_5NDW_123 | 1/5/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.1 | |
| HL_5NDW_124 | 1/5/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.1 | |
| HL_5NDW_125 | 1/5/543:548 | No text annotation Not in a motif group | ||
| HL_5NDW_126 | 1/5/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_5NDW_127 | 1/5/640:649 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_89380.2 | |
| HL_5NDW_128 | 1/5/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_5NDW_129 | 1/5/707:712 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_42097.1 | |
| HL_5NDW_130 | 1/5/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_5NDW_131 | 1/5/763:768 | No text annotation Not in a motif group | homologous HL_5TBW_018 HL_34168.2 | |
| HL_5NDW_132 | 1/5/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.1 | |
| HL_5NDW_133 | 1/5/876:885 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.6 | |
| HL_5NDW_134 | 1/5/910:918 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_5NDW_135 | 1/5/958:963 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_94803.1 | |
| HL_5NDW_137 | 1/5/1076:1083 | No text annotation Not in a motif group | homologous HL_8C3A_024 HL_71554.2 | |
| HL_5NDW_138 | 1/5/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_5NDW_139 | 1/5/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_5NDW_142 | 1/5/1403:1408 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_42097.1 | |
| HL_5NDW_143 | 1/5/1462:1470 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_89380.2 | |
| HL_5NDW_144 | 1/5/1506:1512 | No text annotation Not in a motif group | homologous HL_8C3A_032 HL_46680.1 | |
| HL_5NDW_145 | 1/5/1544:1549 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_76539.2 | |
| HL_5NDW_147 | 1/5/1599:1608 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_5NDW_148 | 1/5/1634:1639 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_42097.1 | |
| HL_5NDW_149 | 1/5/1680:1688 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_60812.1 | |
| HL_5NDW_150 | 1/5/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.2 | |
| HL_5NDW_152 | 1/5/1792:1796 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_38927.2 | |
| HL_5NDW_153 | 1/5/1844:1851 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.2 | |
| HL_5NDW_154 | 1/5/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_5NDW_155 | 1/5/1923:1928 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_5NDW_157 | 1/5/2110:2114 | No text annotation Not in a motif group | homologous HL_5TBW_045 HL_20062.1 | |
| HL_5NDW_158 | 1/5/2135:2145 | No text annotation Not in a motif group | homologous HL_8C3A_046 HL_43613.5 | |
| HL_5NDW_159 | 1/5/2164:2170 | GNRA Not in a motif group | homologous HL_5TBW_047 HL_42097.1 | |
| HL_5NDW_160 | 1/5/2220:2225 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_42097.1 | |
| HL_5NDW_161 | 1/5/2253:2263 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_5NDW_162 | 1/5/2292:2300 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_51824.1 | |
| HL_5NDW_163 | 1/5/2369:2378 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.6 | |
| HL_5NDW_165 | 1/5/2534:2545 | No text annotation Not in a motif group | ||
| HL_5NDW_166 | 1/5/2568:2573 | No text annotation Not in a motif group | ||
| HL_5NDW_167 | 1/5/2616:2624 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_53171.2 | |
| HL_5NDW_168 | 1/5/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_5NDW_169 | 1/5/2673:2681 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.4 | |
| HL_5NDW_170 | 1/5/2693:2700 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.2 | |
| HL_5NDW_171 | 1/5/2724:2732 | No text annotation Not in a motif group | homologous HL_5TBW_058 HL_92229.2 | |
| HL_5NDW_172 | 1/5/2744:2749 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_42097.1 | |
| HL_5NDW_173 | 1/5/2776:2784 | No text annotation Not in a motif group | homologous HL_5TBW_060 HL_96598.1 | |
| HL_5NDW_174 | 1/5/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_5NDW_175 | 1/5/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_5NDW_176 | 1/5/2920:2926 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_5NDW_177 | 1/5/2963:2968 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_42097.1 | |
| HL_5NDW_178 | 1/5/3025:3030 | GNRA Not in a motif group | homologous HL_5TBW_065 HL_42097.1 | |
| HL_5NDW_179 | 1/5/3068:3073 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_46680.1 | |
| HL_5NDW_180 | 1/5/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_5NDW_181 | 1/5/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
| HL_5NDW_182 | 1/5/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_5NDW_183 | 1/5/3303:3311 | No text annotation Not in a motif group | homologous HL_5TBW_070 HL_27930.1 | |
| HL_5NDW_184 | 1/5/3350:3353 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_53837.1 | |
| HL_5NDW_185 | 1/6/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_5NDW_187 | 1/6/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_5NDW_188 | 1/6/190:195 | No text annotation Not in a motif group | homologous HL_4V88_189 HL_77805.2 | |
| HL_5NDW_189 | 1/6/229:236 | No text annotation Not in a motif group | ||
| HL_5NDW_190 | 1/6/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_5NDW_191 | 1/6/276:279 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_53837.1 | |
| HL_5NDW_192 | 1/6/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_5NDW_193 | 1/6/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_5NDW_194 | 1/6/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_5NDW_195 | 1/6/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_5NDW_196 | 1/6/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_5NDW_198 | 1/6/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_5NDW_199 | 1/6/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_5NDW_202 | 1/6/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_5NDW_203 | 1/6/777:783 | No text annotation Not in a motif group | homologous HL_4V88_204 HL_97896.2 | |
| HL_5NDW_204 | 1/6/829:843 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_5NDW_205 | 1/6/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_5NDW_206 | 1/6/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_5NDW_207 | 1/6/997:1007 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_5NDW_208 | 1/6/1054:1065 | No text annotation Not in a motif group | ||
| HL_5NDW_209 | 1/6/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_5NDW_210 | 1/6/1121:1126 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_5NDW_211 | 1/6/1188:1197 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_5NDW_212 | 1/6/1238:1247 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_5NDW_213 | 1/6/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_5NDW_214 | 1/6/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_5NDW_215 | 1/6/1359:1364 | No text annotation Not in a motif group | homologous HL_4V88_216 HL_10278.1 | |
| HL_5NDW_216 | 1/6/1396:1402 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_5NDW_217 | 1/6/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_5NDW_218 | 1/6/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_5NDW_221 | 1/6/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 | |
| HL_5NDW_222 | 1/7/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_5NDW_223 | 1/7/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_5NDW_224 | 1/8/47:56 | No text annotation Not in a motif group | geometric HL_7A0S_001 HL_99167.1 | |
| HL_5NDW_225 | 1/8/69:89 | No text annotation Not in a motif group | ||
| HL_5NDW_226 | 1/8/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_5NDW_227 | 1/8/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5NDW_009 | No text annotation | ||
| HL_5NDW_018 | No text annotation | ||
| HL_5NDW_019 | GNRA | ||
| HL_5NDW_020 | No text annotation | ||
| HL_5NDW_021 | No text annotation | ||
| HL_5NDW_023 | No text annotation | ||
| HL_5NDW_024 | No text annotation | ||
| HL_5NDW_027 | No text annotation | ||
| HL_5NDW_028 | No text annotation | ||
| HL_5NDW_030 | T-loop with 2 stacked bulged bases | ||
| HL_5NDW_031 | No text annotation | ||
| HL_5NDW_032 | Other HL | ||
| HL_5NDW_033 | No text annotation | ||
| HL_5NDW_034 | No text annotation | ||
| HL_5NDW_035 | GNRA | ||
| HL_5NDW_036 | No text annotation | ||
| HL_5NDW_037 | No text annotation | ||
| HL_5NDW_038 | No text annotation | ||
| HL_5NDW_039 | No text annotation | ||
| HL_5NDW_040 | No text annotation | ||
| HL_5NDW_041 | GNRA with one bulged base | ||
| HL_5NDW_042 | UNCG | ||
| HL_5NDW_043 | No text annotation | ||
| HL_5NDW_044 | No text annotation | ||
| HL_5NDW_045 | No text annotation | ||
| HL_5NDW_046 | GNRA | ||
| HL_5NDW_047 | Other HL | ||
| HL_5NDW_048 | No text annotation | ||
| HL_5NDW_049 | No text annotation | ||
| HL_5NDW_050 | No text annotation | ||
| HL_5NDW_051 | No text annotation | ||
| HL_5NDW_052 | No text annotation | ||
| HL_5NDW_053 | No text annotation | ||
| HL_5NDW_054 | No text annotation | ||
| HL_5NDW_055 | No text annotation | ||
| HL_5NDW_056 | No text annotation | ||
| HL_5NDW_057 | No text annotation | ||
| HL_5NDW_058 | No text annotation | ||
| HL_5NDW_059 | GNRA | ||
| HL_5NDW_060 | No text annotation | ||
| HL_5NDW_064 | GNRA | ||
| HL_5NDW_072 | No text annotation | ||
| HL_5NDW_076 | No text annotation | ||
| HL_5NDW_084 | No text annotation | ||
| HL_5NDW_086 | Other HL | ||
| HL_5NDW_087 | No text annotation | ||
| HL_5NDW_088 | No text annotation | ||
| HL_5NDW_089 | No text annotation | ||
| HL_5NDW_090 | No text annotation | ||
| HL_5NDW_091 | No text annotation | ||
| HL_5NDW_093 | No text annotation | ||
| HL_5NDW_096 | GNRA | ||
| HL_5NDW_097 | No text annotation | ||
| HL_5NDW_098 | No text annotation | ||
| HL_5NDW_099 | GNRA | ||
| HL_5NDW_100 | No text annotation | ||
| HL_5NDW_101 | No text annotation | ||
| HL_5NDW_102 | No text annotation | ||
| HL_5NDW_103 | GNRA | ||
| HL_5NDW_104 | No text annotation | ||
| HL_5NDW_106 | No text annotation | ||
| HL_5NDW_107 | Other HL | ||
| HL_5NDW_111 | No text annotation | ||
| HL_5NDW_136 | No text annotation | ||
| HL_5NDW_140 | No text annotation | ||
| HL_5NDW_141 | No text annotation | ||
| HL_5NDW_146 | No text annotation | ||
| HL_5NDW_151 | No text annotation | ||
| HL_5NDW_156 | No text annotation | ||
| HL_5NDW_164 | No text annotation | ||
| HL_5NDW_186 | No text annotation | ||
| HL_5NDW_197 | No text annotation | ||
| HL_5NDW_200 | No text annotation | ||
| HL_5NDW_201 | No text annotation | ||
| HL_5NDW_219 | No text annotation | ||
| HL_5NDW_220 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5NDW_001 | 1/1/3:4, 1/4/155:156 | No text annotation Not in a motif group | ||
| IL_5NDW_002 | 1/1/7:8, 1/4/150:152 | Single bulged C Not in a motif group | homologous IL_5TBW_002 IL_61258.12 | |
| IL_5NDW_003 | 1/1/13:15, 1/4/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_5NDW_004 | 1/1/27:28, 1/1/56:58 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_76488.2 | |
| IL_5NDW_005 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS Not in a motif group | homologous IL_5TBW_005 IL_35728.2 | |
| IL_5NDW_006 | 1/1/82:89, 1/1/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_5NDW_007 | 1/1/123:124, 1/1/144:149 | No text annotation Not in a motif group | homologous IL_5TBW_007 IL_19724.2 | |
| IL_5NDW_008 | 1/1/125:127, 1/1/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_5NDW_009 | 1/1/163:165, 1/1/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_5NDW_010 | 1/1/169:170, 1/1/248:253 | No text annotation Not in a motif group | homologous IL_5TBW_010 IL_74684.1 | |
| IL_5NDW_011 | 1/1/177:179, 1/1/237:241 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_011 IL_63450.2 | |
| IL_5NDW_012 | 1/1/189:191, 1/1/204:205 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.13 | |
| IL_5NDW_013 | 1/1/337:339, 1/4/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_5NDW_014 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_5NDW_015 | 1/1/404:410, 1/4/13:19 | No text annotation Not in a motif group | homologous IL_8C3A_016 IL_66414.6 | |
| IL_5NDW_016 | 1/1/429:431, 1/1/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_5NDW_018 | 1/1/512:513, 1/1/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.2 | |
| IL_5NDW_019 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_5NDW_020 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_5NDW_021 | 1/1/668:670, 1/1/792:794 | No text annotation Not in a motif group | homologous IL_5TBW_021 IL_95997.1 | |
| IL_5NDW_022 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_5NDW_023 | 1/1/725:728, 1/1/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.1 | |
| IL_5NDW_024 | 1/1/752:753, 1/1/779:781 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.2 | |
| IL_5NDW_025 | 1/1/755:756, 1/1/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.13 | |
| IL_5NDW_027 | 1/1/803:805, 1/1/938:940 | No text annotation Not in a motif group | homologous IL_5TBW_027 IL_95997.1 | |
| IL_5NDW_028 | 1/1/805:809, 1/1/931:938 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.6 | |
| IL_5NDW_034 | 1/1/954:956, 1/1/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_5NDW_035 | 1/1/969:970, 1/1/1111:1113 | Single stack bend Not in a motif group | homologous IL_5TBW_035 IL_76488.2 | |
| IL_5NDW_036 | 1/1/977:982, 1/1/1101:1104 | No text annotation Not in a motif group | homologous IL_8C3A_039 IL_59027.1 | |
| IL_5NDW_037 | 1/1/983:985, 1/1/1099:1100 | Single bulged G Not in a motif group | homologous IL_5TBW_037 IL_00225.2 | |
| IL_5NDW_047 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_5NDW_048 | 1/1/1123:1125, 1/1/1133:1135 | No text annotation Not in a motif group | homologous IL_8C3A_050 IL_52767.2 | |
| IL_5NDW_049 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.2 | |
| IL_5NDW_050 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.7 | |
| IL_5NDW_051 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.13 | |
| IL_5NDW_052 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation Not in a motif group | homologous IL_8C3A_054 IL_27086.1 | |
| IL_5NDW_053 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_5NDW_054 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.13 | |
| IL_5NDW_055 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn Not in a motif group | homologous IL_5TBW_054 IL_90538.4 | |
| IL_5NDW_056 | 1/1/1376:1378, 1/1/1428:1431 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_5NDW_057 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_5NDW_058 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_5NDW_059 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_5NDW_060 | 1/1/1444:1450, 1/1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_5NDW_088 | 1/1/2391:2394, 1/1/2986:2988 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_5NDW_099 | 1/1/2824:2826, 1/1/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_5NDW_100 | 1/1/2826:2828, 1/1/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_5NDW_101 | 1/1/2828:2830, 1/1/2858:2862 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_92788.2 | |
| IL_5NDW_102 | 1/1/2835:2839, 1/1/2849:2853 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.8 | |
| IL_5NDW_103 | 1/1/2876:2877, 1/1/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_5NDW_104 | 1/1/2879:2881, 1/1/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_108 IL_90933.2 | |
| IL_5NDW_105 | 1/1/2881:2882, 1/1/2940:2943 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_5NDW_106 | 1/1/2889:2891, 1/1/2912:2914 | No text annotation Not in a motif group | homologous IL_5TBW_110 IL_51629.2 | |
| IL_5NDW_107 | 1/1/2891:2892, 1/1/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_111 IL_95601.3 | |
| IL_5NDW_108 | 1/1/2918:2920, 1/1/2926:2928 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_5NDW_110 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_5NDW_111 | 1/1/3012:3014, 1/1/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_5NDW_112 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_5NDW_113 | 1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_5NDW_114 | 1/1/3054:3059, 1/1/3084:3088 | No text annotation Not in a motif group | homologous IL_8C3A_127 IL_17136.1 | |
| IL_5NDW_115 | 1/1/3063:3064, 1/1/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.2 | |
| IL_5NDW_116 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN Not in a motif group | homologous IL_5TBW_120 IL_89002.2 | |
| IL_5NDW_117 | 1/1/3162:3166, 1/1/3284:3288 | No text annotation Not in a motif group | homologous IL_5TBW_121 IL_05145.2 | |
| IL_5NDW_119 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_5NDW_120 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_5NDW_121 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_5NDW_122 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation Not in a motif group | homologous IL_5TBW_126 IL_19389.6 | |
| IL_5NDW_123 | 1/1/3233:3235, 1/1/3252:3254 | No text annotation Not in a motif group | homologous IL_5TBW_127 IL_95997.1 | |
| IL_5NDW_124 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4UYK_003 IL_30621.2 | |
| IL_5NDW_125 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.2 | |
| IL_5NDW_126 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_5NDW_127 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_5NDW_128 | 1/1/3328:3330, 1/1/3373:3378 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.2 | |
| IL_5NDW_129 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation Not in a motif group | homologous IL_5TBW_133 IL_83162.5 | |
| IL_5NDW_130 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U Not in a motif group | geometric IL_5TBW_134 IL_83039.13 | |
| IL_5NDW_131 | 1/1/3342:3345, 1/1/3360:3363 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_5NDW_132 | 1/1/3349:3350, 1/1/3353:3356 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_136 IL_59677.2 | |
| IL_5NDW_133 | 1/2/24:26, 1/2/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_5NDW_134 | 1/2/35:37, 1/2/471:473 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_5NDW_135 | 1/2/37:41, 1/2/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_5NDW_136 | 1/2/42:48, 1/2/431:433 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_5NDW_137 | 1/2/50:52, 1/2/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_5NDW_138 | 1/2/58:63, 1/2/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_5NDW_139 | 1/2/64:69, 1/2/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_5NDW_140 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_5NDW_141 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_5NDW_142 | 1/2/117:122, 1/2/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_5NDW_143 | 1/2/143:149, 1/2/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_5NDW_144 | 1/2/150:152, 1/2/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_6RA4_002 IL_51629.2 | |
| IL_5NDW_145 | 1/2/186:189, 1/2/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_5NDW_146 | 1/2/204:208, 1/2/257:263 | No text annotation Not in a motif group | ||
| IL_5NDW_147 | 1/2/265:267, 1/2/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_5NDW_148 | 1/2/270:273, 1/2/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_5NDW_149 | 1/2/275:276, 1/2/279:281 | Single bulged U Not in a motif group | geometric IL_4V88_401 IL_83039.13 | |
| IL_5NDW_150 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_5NDW_151 | 1/2/318:323, 1/2/345:346 | No text annotation Not in a motif group | homologous IL_4V88_403 IL_48100.2 | |
| IL_5NDW_153 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_5NDW_154 | 1/2/411:413, 1/2/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_5NDW_155 | 1/2/439:441, 1/2/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_5NDW_156 | 1/2/443:448, 1/2/458:461 | C-loop with extra cWW pair Not in a motif group | homologous IL_4V88_408 IL_93630.2 | |
| IL_5NDW_157 | 1/2/480:485, 1/2/502:508 | No text annotation Not in a motif group | ||
| IL_5NDW_158 | 1/2/516:518, 1/2/533:536 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_411 IL_46796.1 | |
| IL_5NDW_159 | 1/2/518:520, 1/2/532:533 | Minor groove platform Not in a motif group | homologous IL_4V88_412 IL_93353.1 | |
| IL_5NDW_163 | 1/2/616:622, 1/2/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_5NDW_164 | 1/2/624:626, 1/2/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_5NDW_165 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_5NDW_172 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_5NDW_173 | 1/2/867:870, 1/2/957:961 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.2 | |
| IL_5NDW_174 | 1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_5NDW_175 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_5NDW_176 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_5NDW_180 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_5NDW_181 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_5NDW_182 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_5NDW_186 | 1/2/1157:1160, 1/2/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_5NDW_187 | 1/2/1173:1175, 1/2/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_5NDW_188 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_5NDW_220 | 1/3/15:16, 1/3/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_5NDW_221 | 1/3/21:27, 1/3/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_5NDW_222 | 1/3/28:29, 1/3/49:52 | Minor groove platform Not in a motif group | geometric IL_5TBW_374 IL_63797.2 | |
| IL_5NDW_223 | 1/3/29:30, 1/3/47:49 | Single stack bend Not in a motif group | homologous IL_5TBW_375 IL_76488.2 | |
| IL_5NDW_224 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
| IL_5NDW_225 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_5NDW_226 | 1/3/84:87, 1/3/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_5NDW_227 | 1/4/64:66, 1/4/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_145 IL_82068.2 | |
| IL_5NDW_228 | 1/4/68:69, 1/4/89:91 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.13 | |
| IL_5NDW_229 | 1/5/7:8, 1/8/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_5NDW_230 | 1/5/13:15, 1/8/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_5NDW_231 | 1/5/27:28, 1/5/56:58 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_76488.2 | |
| IL_5NDW_232 | 1/5/31:38, 1/5/45:53 | tSH-tHW-tHH-tHS Not in a motif group | homologous IL_5TBW_005 IL_35728.2 | |
| IL_5NDW_233 | 1/5/82:89, 1/5/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_5NDW_234 | 1/5/123:124, 1/5/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_5NDW_235 | 1/5/125:127, 1/5/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_5NDW_236 | 1/5/163:165, 1/5/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_5NDW_237 | 1/5/168:171, 1/5/247:254 | No text annotation Not in a motif group | ||
| IL_5NDW_238 | 1/5/177:178, 1/5/238:241 | No text annotation Not in a motif group | ||
| IL_5NDW_239 | 1/5/189:191, 1/5/204:205 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.13 | |
| IL_5NDW_240 | 1/5/337:339, 1/8/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_5NDW_241 | 1/5/376:379, 1/5/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_5NDW_242 | 1/5/404:410, 1/8/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_5NDW_243 | 1/5/429:431, 1/5/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_5NDW_245 | 1/5/512:513, 1/5/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.2 | |
| IL_5NDW_246 | 1/5/517:525, 1/5/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_5NDW_247 | 1/5/531:538, 1/5/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_5NDW_248 | 1/5/668:670, 1/5/792:794 | No text annotation Not in a motif group | homologous IL_5TBW_021 IL_95997.1 | |
| IL_5NDW_249 | 1/5/680:684, 1/5/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_5NDW_250 | 1/5/725:728, 1/5/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.1 | |
| IL_5NDW_251 | 1/5/752:753, 1/5/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.2 | |
| IL_5NDW_252 | 1/5/755:756, 1/5/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.13 | |
| IL_5NDW_253 | 1/5/758:763, 1/5/768:773 | No text annotation Not in a motif group | geometric IL_5TBW_026 IL_19954.2 | |
| IL_5NDW_254 | 1/5/803:805, 1/5/938:940 | No text annotation Not in a motif group | homologous IL_5TBW_027 IL_95997.1 | |
| IL_5NDW_255 | 1/5/805:809, 1/5/931:938 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.6 | |
| IL_5NDW_256 | 1/5/828:829, 1/5/895:897 | No text annotation Not in a motif group | homologous IL_8C3A_031 IL_37497.2 | |
| IL_5NDW_257 | 1/5/833:834, 1/5/859:861 | Single bulged G Not in a motif group | homologous IL_5TBW_029 IL_00225.2 | |
| IL_5NDW_258 | 1/5/834:838, 1/5/855:859 | Triple sheared Not in a motif group | geometric IL_5TBW_030 IL_56467.8 | |
| IL_5NDW_259 | 1/5/869:872, 1/5/888:890 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_5NDW_260 | 1/5/873:875, 1/5/886:887 | Single bulged U Not in a motif group | homologous IL_5TBW_032 IL_83039.13 | |
| IL_5NDW_261 | 1/5/907:909, 1/5/919:923 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.6 | |
| IL_5NDW_262 | 1/5/954:956, 1/5/965:967 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_95997.1 | |
| IL_5NDW_263 | 1/5/969:971, 1/5/1110:1113 | No text annotation Not in a motif group | ||
| IL_5NDW_264 | 1/5/977:981, 1/5/1102:1104 | No text annotation Not in a motif group | homologous IL_5TBW_036 IL_67474.4 | |
| IL_5NDW_265 | 1/5/983:985, 1/5/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_5NDW_266 | 1/5/991:997, 1/5/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5TBW_038 IL_93830.3 | |
| IL_5NDW_267 | 1/5/997:998, 1/5/1050:1052 | Minor groove platform Not in a motif group | homologous IL_5TBW_039 IL_42622.2 | |
| IL_5NDW_268 | 1/5/999:1004, 1/5/1046:1049 | No text annotation Not in a motif group | homologous IL_8C3A_043 IL_02509.1 | |
| IL_5NDW_269 | 1/5/1006:1009, 1/5/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
| IL_5NDW_270 | 1/5/1009:1011, 1/5/1039:1041 | No text annotation Not in a motif group | homologous IL_8C3A_045 IL_95997.1 | |
| IL_5NDW_271 | 1/5/1013:1018, 1/5/1034:1037 | Other IL Not in a motif group | homologous IL_5TBW_043 IL_71110.1 | |
| IL_5NDW_272 | 1/5/1069:1071, 1/5/1087:1089 | No text annotation Not in a motif group | homologous IL_8C3A_047 IL_95997.1 | |
| IL_5NDW_273 | 1/5/1074:1076, 1/5/1083:1084 | Single bulged A Not in a motif group | geometric IL_5TBW_045 IL_37497.2 | |
| IL_5NDW_274 | 1/5/1120:1122, 1/5/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_5NDW_275 | 1/5/1123:1125, 1/5/1133:1135 | No text annotation Not in a motif group | homologous IL_8C3A_050 IL_52767.2 | |
| IL_5NDW_276 | 1/5/1167:1171, 1/5/1328:1332 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.2 | |
| IL_5NDW_277 | 1/5/1173:1180, 1/5/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.7 | |
| IL_5NDW_278 | 1/5/1180:1182, 1/5/1324:1325 | No text annotation Not in a motif group | homologous IL_8C3A_053 IL_83039.13 | |
| IL_5NDW_279 | 1/5/1187:1194, 1/5/1314:1319 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
| IL_5NDW_280 | 1/5/1194:1205, 1/5/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_5NDW_281 | 1/5/1207:1209, 1/5/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.13 | |
| IL_5NDW_283 | 1/5/1376:1378, 1/5/1428:1431 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_5NDW_284 | 1/5/1385:1387, 1/5/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_5NDW_285 | 1/5/1388:1395, 1/5/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_5NDW_286 | 1/5/1398:1400, 1/5/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_5NDW_287 | 1/5/1444:1450, 1/5/2354:2359 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_5NDW_288 | 1/5/1492:1495, 1/5/1835:1836 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V9F_050 IL_50694.2 | |
| IL_5NDW_289 | 1/5/1500:1505, 1/5/1513:1516 | No text annotation Not in a motif group | homologous IL_5TBW_062 IL_93630.2 | |
| IL_5NDW_290 | 1/5/1532:1536, 1/5/1585:1590 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_89002.2 | |
| IL_5NDW_291 | 1/5/1618:1621, 1/5/1824:1826 | No text annotation Not in a motif group | homologous IL_8C3A_070 IL_84698.1 | |
| IL_5NDW_292 | 1/5/1623:1625, 1/5/1818:1822 | No text annotation Not in a motif group | ||
| IL_5NDW_293 | 1/5/1627:1631, 1/5/1811:1816 | No text annotation Not in a motif group | geometric IL_5TBW_066 IL_48431.1 | |
| IL_5NDW_294 | 1/5/1645:1649, 1/5/1806:1810 | Triple sheared Not in a motif group | geometric IL_5TBW_067 IL_56467.8 | |
| IL_5NDW_295 | 1/5/1661:1663, 1/5/1786:1788 | No text annotation Not in a motif group | homologous IL_5TBW_068 IL_95997.1 | |
| IL_5NDW_296 | 1/5/1669:1670, 1/5/1778:1780 | Single bulged C Not in a motif group | geometric IL_5TBW_069 IL_61258.12 | |
| IL_5NDW_297 | 1/5/1670:1671, 1/5/1776:1778 | Single stack bend Not in a motif group | homologous IL_5TBW_070 IL_76488.2 | |
| IL_5NDW_298 | 1/5/1694:1698, 1/5/1747:1752 | No text annotation Not in a motif group | homologous IL_5TBW_071 IL_69313.1 | |
| IL_5NDW_299 | 1/5/1702:1707, 1/5/1737:1743 | No text annotation Not in a motif group | homologous IL_8C3A_078 IL_39753.1 | |
| IL_5NDW_300 | 1/5/1711:1717, 1/5/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_5NDW_301 | 1/5/1883:1889, 1/5/2346:2349 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_49460.2 | |
| IL_5NDW_302 | 1/5/1895:1897, 1/5/2338:2340 | Isolated tWW turn Not in a motif group | homologous IL_5TBW_075 IL_54997.7 | |
| IL_5NDW_303 | 1/5/1898:1901, 1/5/2336:2337 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_5NDW_304 | 1/5/1901:1906, 1/5/2333:2336 | No text annotation Not in a motif group | homologous IL_8C3A_083 IL_82842.2 | |
| IL_5NDW_305 | 1/5/1918:1923, 1/5/1928:1934 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5TBW_078 IL_65969.2 | |
| IL_5NDW_306 | 1/5/1940:1942, 1/5/2106:2108 | No text annotation Not in a motif group | homologous IL_5TBW_079 IL_95997.1 | |
| IL_5NDW_307 | 1/5/1947:1948, 1/5/2098:2101 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_5NDW_308 | 1/5/2128:2129, 1/5/2323:2325 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_5NDW_309 | 1/5/2156:2161, 1/5/2173:2180 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_5NDW_310 | 1/5/2196:2199, 1/5/2245:2246 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_88739.1 | |
| IL_5NDW_311 | 1/5/2200:2201, 1/5/2241:2244 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_5NDW_312 | 1/5/2204:2206, 1/5/2237:2238 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_5NDW_313 | 1/5/2206:2210, 1/5/2235:2237 | No text annotation Not in a motif group | ||
| IL_5NDW_314 | 1/5/2211:2217, 1/5/2228:2234 | No text annotation Not in a motif group | homologous IL_5TBW_088 IL_36973.6 | |
| IL_5NDW_315 | 1/5/2276:2277, 1/5/2307:2310 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_089 IL_59677.2 | |
| IL_5NDW_316 | 1/5/2277:2288, 1/5/2304:2307 | No text annotation Not in a motif group | geometric IL_5TBW_090 IL_81589.2 | |
| IL_5NDW_317 | 1/5/2391:2394, 1/5/2986:2988 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_5NDW_318 | 1/5/2396:2398, 1/5/2981:2984 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_54678.5 | |
| IL_5NDW_319 | 1/5/2409:2411, 1/5/2811:2812 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.13 | |
| IL_5NDW_320 | 1/5/2412:2413, 1/5/2807:2810 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_5NDW_321 | 1/5/2423:2425, 1/5/2604:2607 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.7 | |
| IL_5NDW_322 | 1/5/2440:2442, 1/5/2506:2507 | Single stack bend Not in a motif group | geometric IL_5J7L_269 IL_76488.2 | |
| IL_5NDW_323 | 1/5/2520:2526, 1/5/2584:2587 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_5NDW_324 | 1/5/2614:2615, 1/5/2625:2627 | No text annotation Not in a motif group | homologous IL_8C3A_107 IL_69996.1 | |
| IL_5NDW_325 | 1/5/2666:2668, 1/5/2686:2690 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.7 | |
| IL_5NDW_326 | 1/5/2714:2716, 1/5/2740:2741 | Single bulged A Not in a motif group | geometric IL_5WWT_001 IL_37497.2 | |
| IL_5NDW_327 | 1/5/2718:2721, 1/5/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.2 | |
| IL_5NDW_328 | 1/5/2770:2773, 1/5/2787:2788 | No text annotation Not in a motif group | homologous IL_8C3A_110 IL_76488.2 | |
| IL_5NDW_329 | 1/5/2823:2824, 1/5/2865:2867 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_27635.1 | |
| IL_5NDW_330 | 1/5/2824:2826, 1/5/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_5NDW_331 | 1/5/2826:2828, 1/5/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_5NDW_332 | 1/5/2828:2830, 1/5/2858:2862 | No text annotation Not in a motif group | homologous IL_5TBW_105 IL_92788.2 | |
| IL_5NDW_333 | 1/5/2835:2839, 1/5/2849:2853 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.8 | |
| IL_5NDW_334 | 1/5/2876:2877, 1/5/2949:2951 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.2 | |
| IL_5NDW_335 | 1/5/2879:2881, 1/5/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_5NDW_336 | 1/5/2881:2882, 1/5/2940:2943 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_109 IL_71530.2 | |
| IL_5NDW_337 | 1/5/2889:2891, 1/5/2912:2914 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_5NDW_338 | 1/5/2891:2892, 1/5/2909:2912 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_111 IL_95601.3 | |
| IL_5NDW_339 | 1/5/2918:2920, 1/5/2926:2928 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_5NDW_340 | 1/5/2960:2961, 1/5/2970:2972 | No text annotation Not in a motif group | homologous IL_8C3A_122 IL_37497.2 | |
| IL_5NDW_341 | 1/5/3004:3007, 1/5/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_5NDW_342 | 1/5/3012:3014, 1/5/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_5NDW_343 | 1/5/3018:3025, 1/5/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_5NDW_344 | 1/5/3047:3051, 1/5/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_5NDW_345 | 1/5/3054:3059, 1/5/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_5NDW_346 | 1/5/3063:3064, 1/5/3077:3080 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_5NDW_347 | 1/5/3103:3107, 1/5/3127:3131 | UAA/GAN Not in a motif group | homologous IL_5TBW_120 IL_89002.2 | |
| IL_5NDW_348 | 1/5/3164:3166, 1/5/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_5NDW_349 | 1/5/3168:3170, 1/5/3280:3282 | No text annotation Not in a motif group | homologous IL_5TBW_122 IL_95997.1 | |
| IL_5NDW_350 | 1/5/3177:3179, 1/5/3210:3211 | Single bulged A Not in a motif group | homologous IL_5TBW_123 IL_37497.2 | |
| IL_5NDW_351 | 1/5/3179:3188, 1/5/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_5NDW_352 | 1/5/3193:3194, 1/5/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_5NDW_353 | 1/5/3225:3229, 1/5/3258:3260 | No text annotation Not in a motif group | homologous IL_5TBW_126 IL_19389.6 | |
| IL_5NDW_354 | 1/5/3233:3235, 1/5/3252:3254 | No text annotation Not in a motif group | homologous IL_5TBW_127 IL_95997.1 | |
| IL_5NDW_355 | 1/5/3235:3238, 1/5/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6MWN_005 IL_30621.2 | |
| IL_5NDW_356 | 1/5/3300:3303, 1/5/3311:3314 | No text annotation Not in a motif group | homologous IL_8C3A_135 IL_30621.2 | |
| IL_5NDW_357 | 1/5/3318:3320, 1/5/3387:3388 | No text annotation Not in a motif group | homologous IL_8C3A_136 IL_83039.13 | |
| IL_5NDW_358 | 1/5/3324:3325, 1/5/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_5NDW_359 | 1/5/3328:3330, 1/5/3373:3378 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.2 | |
| IL_5NDW_360 | 1/5/3332:3337, 1/5/3367:3371 | No text annotation Not in a motif group | homologous IL_5TBW_133 IL_83162.5 | |
| IL_5NDW_361 | 1/5/3340:3342, 1/5/3363:3364 | No text annotation Not in a motif group | homologous IL_8C3A_140 IL_83039.13 | |
| IL_5NDW_362 | 1/5/3342:3345, 1/5/3360:3363 | Double sheared Not in a motif group | geometric IL_4V9F_100 IL_09705.9 | |
| IL_5NDW_363 | 1/5/3349:3350, 1/5/3353:3356 | No text annotation Not in a motif group | homologous IL_8C3A_142 IL_59677.2 | |
| IL_5NDW_364 | 1/6/24:26, 1/6/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_5NDW_365 | 1/6/35:37, 1/6/471:473 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_5NDW_366 | 1/6/37:41, 1/6/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_5NDW_367 | 1/6/42:48, 1/6/431:433 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_5NDW_368 | 1/6/50:52, 1/6/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_5NDW_369 | 1/6/58:63, 1/6/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_5NDW_370 | 1/6/64:69, 1/6/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_5NDW_371 | 1/6/109:112, 1/6/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_5NDW_372 | 1/6/113:116, 1/6/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_5NDW_373 | 1/6/117:122, 1/6/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_5NDW_374 | 1/6/143:149, 1/6/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_5NDW_375 | 1/6/150:152, 1/6/162:164 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_5NDW_376 | 1/6/186:189, 1/6/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_5NDW_377 | 1/6/204:206, 1/6/259:263 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_05564.2 | |
| IL_5NDW_378 | 1/6/206:208, 1/6/257:259 | No text annotation Not in a motif group | geometric IL_4V88_398 IL_95997.1 | |
| IL_5NDW_379 | 1/6/265:267, 1/6/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_5NDW_380 | 1/6/270:273, 1/6/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_5NDW_381 | 1/6/275:276, 1/6/279:281 | Single bulged U Not in a motif group | homologous IL_4V88_401 IL_83039.13 | |
| IL_5NDW_382 | 1/6/311:316, 1/6/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_5NDW_383 | 1/6/318:323, 1/6/345:346 | No text annotation Not in a motif group | homologous IL_4V88_403 IL_48100.2 | |
| IL_5NDW_384 | 1/6/363:365, 1/6/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_5NDW_385 | 1/6/389:391, 1/6/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_5NDW_386 | 1/6/411:413, 1/6/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_5NDW_387 | 1/6/439:441, 1/6/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_5NDW_388 | 1/6/443:448, 1/6/458:461 | C-loop with extra cWW pair Not in a motif group | homologous IL_4V88_408 IL_93630.2 | |
| IL_5NDW_389 | 1/6/481:482, 1/6/505:507 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.2 | |
| IL_5NDW_390 | 1/6/516:518, 1/6/533:536 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_411 IL_46796.1 | |
| IL_5NDW_391 | 1/6/518:520, 1/6/532:533 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_5NDW_392 | 1/6/550:557, 1/6/587:588 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_5NDW_393 | 1/6/557:559, 1/6/586:587 | Single bulged U Not in a motif group | homologous IL_4V88_414 IL_83039.13 | |
| IL_5NDW_394 | 1/6/562:568, 1/6/575:583 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_5NDW_395 | 1/6/616:622, 1/6/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_5NDW_396 | 1/6/624:626, 1/6/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_5NDW_397 | 1/6/627:631, 1/6/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_5NDW_398 | 1/6/646:648, 1/6/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_95997.1 | |
| IL_5NDW_400 | 1/6/746:747, 1/6/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_5NDW_401 | 1/6/748:750, 1/6/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_5NDW_402 | 1/6/751:759, 1/6/791:798 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_5NDW_403 | 1/6/819:822, 1/6/850:852 | No text annotation Not in a motif group | homologous IL_4V88_426 IL_95997.1 | |
| IL_5NDW_404 | 1/6/865:866, 1/6/962:965 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_5NDW_405 | 1/6/868:870, 1/6/957:960 | No text annotation Not in a motif group | geometric IL_5UNE_004 IL_95997.1 | |
| IL_5NDW_406 | 1/6/871:874, 1/6/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_5NDW_407 | 1/6/874:878, 1/6/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_5NDW_408 | 1/6/885:888, 1/6/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_5NDW_409 | 1/6/893:899, 1/6/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_5NDW_410 | 1/6/985:990, 1/6/1014:1016 | Other IL Not in a motif group | homologous IL_4V88_435 IL_22046.1 | |
| IL_5NDW_411 | 1/6/990:994, 1/6/1010:1014 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_436 IL_17136.1 | |
| IL_5NDW_412 | 1/6/1034:1036, 1/6/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_5NDW_413 | 1/6/1041:1044, 1/6/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_5NDW_414 | 1/6/1051:1053, 1/6/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_5NDW_415 | 1/6/1111:1118, 1/6/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_5NDW_416 | 1/6/1146:1147, 1/6/1630:1632 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_5NDW_417 | 1/6/1149:1151, 1/6/1627:1628 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_5NDW_418 | 1/6/1157:1160, 1/6/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_5NDW_419 | 1/6/1173:1175, 1/6/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_5NDW_420 | 1/6/1178:1179, 1/6/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_5NDW_421 | 1/6/1213:1215, 1/6/1448:1450 | No text annotation Not in a motif group | homologous IL_4V88_446 IL_95997.1 | |
| IL_5NDW_422 | 1/6/1223:1230, 1/6/1257:1260 | No text annotation Not in a motif group | ||
| IL_5NDW_423 | 1/6/1230:1233, 1/6/1252:1257 | No text annotation Not in a motif group | ||
| IL_5NDW_424 | 1/6/1234:1236, 1/6/1249:1251 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_5NDW_425 | 1/6/1268:1270, 1/6/1440:1441 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_5NDW_426 | 1/6/1272:1276, 1/6/1436:1438 | Isolated cWS basepair Not in a motif group | geometric IL_4V88_450 IL_76319.2 | |
| IL_5NDW_427 | 1/6/1276:1278, 1/6/1430:1436 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_5NDW_428 | 1/6/1280:1281, 1/6/1426:1428 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_5NDW_429 | 1/6/1290:1292, 1/6/1323:1325 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_5NDW_430 | 1/6/1306:1308, 1/6/1317:1318 | Minor groove platform Not in a motif group | homologous IL_4V88_454 IL_93353.1 | |
| IL_5NDW_431 | 1/6/1339:1342, 1/6/1383:1385 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_5NDW_432 | 1/6/1345:1349, 1/6/1376:1380 | No text annotation Not in a motif group | ||
| IL_5NDW_433 | 1/6/1352:1354, 1/6/1369:1373 | No text annotation Not in a motif group | homologous IL_4V88_457 IL_95997.1 | |
| IL_5NDW_434 | 1/6/1389:1391, 1/6/1407:1412 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_458 IL_58032.1 | |
| IL_5NDW_435 | 1/6/1488:1494, 1/6/1513:1518 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_5NDW_436 | 1/6/1495:1498, 1/6/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_5NDW_437 | 1/6/1540:1545, 1/6/1566:1571 | No text annotation Not in a motif group | homologous IL_4V88_462 IL_19954.2 | |
| IL_5NDW_438 | 1/6/1636:1638, 1/6/1764:1767 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_5NDW_439 | 1/6/1638:1641, 1/6/1760:1764 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5NDW_440 | 1/6/1642:1644, 1/6/1757:1759 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_5NDW_442 | 1/6/1650:1652, 1/6/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_5NDW_443 | 1/6/1653:1656, 1/6/1744:1747 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_5NDW_444 | 1/6/1656:1658, 1/6/1743:1744 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.13 | |
| IL_5NDW_445 | 1/6/1665:1667, 1/6/1734:1736 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_5NDW_446 | 1/6/1669:1672, 1/6/1729:1732 | Double sheared Not in a motif group | geometric IL_4V88_471 IL_09705.9 | |
| IL_5NDW_447 | 1/6/1672:1674, 1/6/1727:1729 | No text annotation Not in a motif group | homologous IL_4V88_472 IL_95997.1 | |
| IL_5NDW_448 | 1/6/1675:1678, 1/6/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_5NDW_449 | 1/6/1678:1682, 1/6/1719:1723 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_5NDW_450 | 1/7/15:16, 1/7/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_5NDW_451 | 1/7/21:27, 1/7/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_5NDW_452 | 1/7/28:29, 1/7/49:52 | Minor groove platform Not in a motif group | homologous IL_5TBW_374 IL_63797.2 | |
| IL_5NDW_453 | 1/7/29:30, 1/7/47:49 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_5NDW_454 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
| IL_5NDW_455 | 1/7/72:80, 1/7/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_5NDW_456 | 1/7/84:87, 1/7/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_5NDW_457 | 1/8/64:67, 1/8/92:96 | No text annotation Not in a motif group | ||
| IL_5NDW_458 | 1/8/68:69, 1/8/89:91 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.13 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5NDW_017 | No text annotation | ||
| IL_5NDW_026 | No text annotation | ||
| IL_5NDW_029 | Single bulged G | ||
| IL_5NDW_030 | No text annotation | ||
| IL_5NDW_031 | No text annotation | ||
| IL_5NDW_032 | Single bulged U | ||
| IL_5NDW_033 | Multiple bulged bases | ||
| IL_5NDW_038 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5NDW_039 | Minor groove platform | ||
| IL_5NDW_040 | No text annotation | ||
| IL_5NDW_041 | Tandem non-canonical cWW pairs | ||
| IL_5NDW_042 | No text annotation | ||
| IL_5NDW_043 | Other IL | ||
| IL_5NDW_044 | Single stack bend | ||
| IL_5NDW_045 | No text annotation | ||
| IL_5NDW_046 | Single bulged A | ||
| IL_5NDW_061 | C-loop | ||
| IL_5NDW_062 | UAA/GAN | ||
| IL_5NDW_063 | Other IL | ||
| IL_5NDW_064 | Multiple bulged bases with near cWW | ||
| IL_5NDW_065 | No text annotation | ||
| IL_5NDW_066 | Triple sheared | ||
| IL_5NDW_067 | No text annotation | ||
| IL_5NDW_068 | Single bulged C | ||
| IL_5NDW_069 | Single stack bend | ||
| IL_5NDW_070 | No text annotation | ||
| IL_5NDW_071 | No text annotation | ||
| IL_5NDW_072 | Kink-turn | ||
| IL_5NDW_073 | No text annotation | ||
| IL_5NDW_074 | Isolated tWW turn | ||
| IL_5NDW_075 | Major groove platform; stack outside cWW | ||
| IL_5NDW_076 | Intercalated tWH | ||
| IL_5NDW_077 | No text annotation | ||
| IL_5NDW_078 | No text annotation | ||
| IL_5NDW_079 | No text annotation | ||
| IL_5NDW_080 | Single bulged A | ||
| IL_5NDW_081 | Kink-turn related | ||
| IL_5NDW_082 | Major groove outside cWW, minor groove, intercalation pocket | ||
| IL_5NDW_083 | Major groove outside cWW, minor groove, intercalation pocket | ||
| IL_5NDW_084 | No text annotation | ||
| IL_5NDW_085 | No text annotation | ||
| IL_5NDW_086 | Multiple bulged bases | ||
| IL_5NDW_087 | No text annotation | ||
| IL_5NDW_089 | Minor groove platform with intercalation | ||
| IL_5NDW_090 | No text annotation | ||
| IL_5NDW_091 | Minor groove platform | ||
| IL_5NDW_092 | No text annotation | ||
| IL_5NDW_093 | No text annotation | ||
| IL_5NDW_094 | Single bulged A | ||
| IL_5NDW_095 | Isolated tHS basepair with bulges | ||
| IL_5NDW_096 | Tandem non-canonical cWW pairs | ||
| IL_5NDW_097 | No text annotation | ||
| IL_5NDW_098 | Major groove platform | ||
| IL_5NDW_109 | Single bulged A | ||
| IL_5NDW_118 | No text annotation | ||
| IL_5NDW_152 | No text annotation | ||
| IL_5NDW_160 | SSU/LSU pseudoknot | ||
| IL_5NDW_161 | Single bulged U | ||
| IL_5NDW_162 | No text annotation | ||
| IL_5NDW_166 | No text annotation | ||
| IL_5NDW_167 | No text annotation | ||
| IL_5NDW_168 | No text annotation | ||
| IL_5NDW_169 | No text annotation | ||
| IL_5NDW_170 | No text annotation | ||
| IL_5NDW_171 | No text annotation | ||
| IL_5NDW_177 | No text annotation | ||
| IL_5NDW_178 | Other IL | ||
| IL_5NDW_179 | tSH-tHW-tHS | ||
| IL_5NDW_183 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_5NDW_184 | Single bulged A | ||
| IL_5NDW_185 | Single bulged G | ||
| IL_5NDW_189 | No text annotation | ||
| IL_5NDW_190 | No text annotation | ||
| IL_5NDW_191 | No text annotation | ||
| IL_5NDW_192 | No text annotation | ||
| IL_5NDW_193 | Single bulged U | ||
| IL_5NDW_194 | Isolated cWS basepair | ||
| IL_5NDW_195 | Minor groove platform with extra cWW | ||
| IL_5NDW_196 | Single bulged A | ||
| IL_5NDW_197 | Isolated cWH basepair | ||
| IL_5NDW_198 | Minor groove platform | ||
| IL_5NDW_199 | No text annotation | ||
| IL_5NDW_200 | No text annotation | ||
| IL_5NDW_201 | No text annotation | ||
| IL_5NDW_202 | Major groove platform; stack outside cWW | ||
| IL_5NDW_203 | No text annotation | ||
| IL_5NDW_204 | No text annotation | ||
| IL_5NDW_205 | Tandem non-canonical cWW pairs | ||
| IL_5NDW_206 | No text annotation | ||
| IL_5NDW_207 | No text annotation | ||
| IL_5NDW_208 | No text annotation | ||
| IL_5NDW_209 | No text annotation | ||
| IL_5NDW_210 | No text annotation | ||
| IL_5NDW_211 | AA cWW | ||
| IL_5NDW_212 | Double sheared | ||
| IL_5NDW_213 | Single bulged U | ||
| IL_5NDW_214 | No text annotation | ||
| IL_5NDW_215 | Double sheared | ||
| IL_5NDW_216 | No text annotation | ||
| IL_5NDW_217 | Tandem non-canonical cWW pairs | ||
| IL_5NDW_218 | Triple sheared | ||
| IL_5NDW_219 | Other IL | ||
| IL_5NDW_244 | No text annotation | ||
| IL_5NDW_282 | No text annotation | ||
| IL_5NDW_399 | No text annotation | ||
| IL_5NDW_441 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5NDW_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation Not in a motif group | ||
| J3_5NDW_002 | 1/1/369:376, 1/1/403:404, 1/4/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_5NDW_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_5NDW_006 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation Not in a motif group | homologous J3_5TBW_006 NA | |
| J3_5NDW_013 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation Not in a motif group | ||
| J3_5NDW_014 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_5NDW_015 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation Not in a motif group | ||
| J3_5NDW_016 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation Not in a motif group | ||
| J3_5NDW_018 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_5NDW_019 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_5NDW_020 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_5NDW_021 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_5NDW_027 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA | |
| J3_5NDW_028 | 1/3/9:14, 1/3/66:67, 1/3/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_5NDW_029 | 1/4/44:45, 1/4/58:64, 1/4/96:100 | No text annotation Not in a motif group | ||
| J3_5NDW_030 | 1/5/113:123, 1/5/149:158, 1/5/263:267 | No text annotation Not in a motif group | ||
| J3_5NDW_031 | 1/5/369:376, 1/5/403:404, 1/8/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_5NDW_032 | 1/5/502:503, 1/5/588:597, 1/5/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_5NDW_033 | 1/5/814:820, 1/5/905:907, 1/5/923:926 | No text annotation Not in a motif group | homologous J3_5TBW_004 NA | |
| J3_5NDW_034 | 1/5/829:831, 1/5/863:867, 1/5/892:895 | No text annotation Not in a motif group | homologous J3_8C3A_004 NA | |
| J3_5NDW_035 | 1/5/986:987, 1/5/1062:1066, 1/5/1092:1098 | No text annotation Not in a motif group | ||
| J3_5NDW_036 | 1/5/1479:1485, 1/5/1857:1859, 1/5/1871:1874 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_5NDW_037 | 1/5/1488:1491, 1/5/1837:1843, 1/5/1852:1854 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_5NDW_038 | 1/5/1526:1531, 1/5/1591:1595, 1/5/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_5NDW_039 | 1/5/1631:1633, 1/5/1640:1645, 1/5/1810:1811 | No text annotation Not in a motif group | homologous J3_5TBW_011 NA | |
| J3_5NDW_040 | 1/5/2432:2435, 1/5/2512:2517, 1/5/2590:2597 | No text annotation Not in a motif group | homologous J3_5TBW_012 NA | |
| J3_5NDW_041 | 1/5/2664:2666, 1/5/2690:2692, 1/5/2701:2706 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_5NDW_042 | 1/5/2886:2889, 1/5/2914:2916, 1/5/2930:2936 | No text annotation Not in a motif group | ||
| J3_5NDW_043 | 1/5/3298:3300, 1/5/3314:3318, 1/5/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_5NDW_044 | 1/6/41:42, 1/6/433:439, 1/6/464:466 | No text annotation Not in a motif group | ||
| J3_5NDW_045 | 1/6/633:635, 1/6/861:865, 1/6/965:966 | No text annotation Not in a motif group | ||
| J3_5NDW_046 | 1/6/760:763, 1/6/773:775, 1/6/785:790 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_5NDW_047 | 1/6/881:884, 1/6/928:936, 1/6/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_5NDW_048 | 1/6/1037:1039, 1/6/1079:1083, 1/6/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_5NDW_049 | 1/6/1161:1164, 1/6/1581:1587, 1/6/1609:1616 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_5NDW_050 | 1/6/1168:1171, 1/6/1468:1470, 1/6/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_5NDW_051 | 1/6/1180:1187, 1/6/1198:1209, 1/6/1454:1458 | No text annotation Not in a motif group | ||
| J3_5NDW_052 | 1/6/1215:1220, 1/6/1263:1267, 1/6/1442:1448 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_5NDW_053 | 1/6/1283:1288, 1/6/1327:1332, 1/6/1419:1424 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_5NDW_054 | 1/6/1293:1294, 1/6/1303:1306, 1/6/1318:1322 | No text annotation Not in a motif group | ||
| J3_5NDW_055 | 1/6/1336:1338, 1/6/1386:1389, 1/6/1412:1415 | No text annotation Not in a motif group | homologous J3_4V88_040 NA | |
| J3_5NDW_056 | 1/6/1470:1474, 1/6/1533:1540, 1/6/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA | |
| J3_5NDW_057 | 1/7/9:14, 1/7/66:68, 1/7/110:112 | No text annotation Not in a motif group | ||
| J3_5NDW_058 | 1/8/44:45, 1/8/58:64, 1/8/96:100 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5NDW_004 | No text annotation | ||
| J3_5NDW_005 | No text annotation | ||
| J3_5NDW_007 | No text annotation | ||
| J3_5NDW_008 | No text annotation | ||
| J3_5NDW_009 | No text annotation | ||
| J3_5NDW_010 | No text annotation | ||
| J3_5NDW_011 | No text annotation | ||
| J3_5NDW_012 | No text annotation | ||
| J3_5NDW_017 | No text annotation | ||
| J3_5NDW_022 | No text annotation | ||
| J3_5NDW_023 | No text annotation | ||
| J3_5NDW_024 | No text annotation | ||
| J3_5NDW_025 | No text annotation | ||
| J3_5NDW_026 | No text annotation |
Coloring options: