5ON6 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5ON6_001 | 1/1/38:45 | No text annotation Not in a motif group | geometric HL_5TBW_001 HL_06192.2 | |
| HL_5ON6_002 | 1/1/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
| HL_5ON6_003 | 1/1/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_5ON6_004 | 1/1/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_98426.1 | |
| HL_5ON6_005 | 1/1/194:201 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_89380.2 | |
| HL_5ON6_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_5ON6_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_5ON6_008 | 1/1/278:287 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_5ON6_010 | 1/1/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.1 | |
| HL_5ON6_011 | 1/1/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.1 | |
| HL_5ON6_012 | 1/1/543:548 | No text annotation Not in a motif group | homologous HL_5TBW_012 HL_86373.2 | |
| HL_5ON6_013 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_5ON6_014 | 1/1/640:649 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_89380.2 | |
| HL_5ON6_015 | 1/1/686:694 | No text annotation Not in a motif group | homologous HL_5TBW_015 HL_03345.1 | |
| HL_5ON6_016 | 1/1/707:712 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_42097.1 | |
| HL_5ON6_017 | 1/1/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_5ON6_022 | 1/1/958:963 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_94803.1 | |
| HL_5ON6_025 | 1/1/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_5ON6_026 | 1/1/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_5ON6_030 | 1/1/1403:1408 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_42097.1 | |
| HL_5ON6_062 | 1/1/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_5ON6_063 | 1/1/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_5ON6_064 | 1/1/2920:2926 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_43656.2 | |
| HL_5ON6_066 | 1/1/3025:3030 | GNRA Not in a motif group | geometric HL_5TBW_065 HL_42097.1 | |
| HL_5ON6_067 | 1/1/3068:3073 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_46680.1 | |
| HL_5ON6_068 | 1/1/3110:3124 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.7 | |
| HL_5ON6_069 | 1/1/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
| HL_5ON6_070 | 1/1/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_5ON6_071 | 1/1/3303:3311 | No text annotation Not in a motif group | geometric HL_5TBW_070 HL_27930.1 | |
| HL_5ON6_072 | 1/1/3350:3353 | No text annotation Not in a motif group | homologous HL_5TBW_071 HL_53837.1 | |
| HL_5ON6_073 | 1/3/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_5ON6_074 | 1/3/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_5ON6_076 | 1/4/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_5ON6_077 | 1/4/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 | |
| HL_5ON6_078 | 1/6/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_5ON6_080 | 1/6/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_5ON6_081 | 1/6/190:195 | No text annotation Not in a motif group | homologous HL_4V88_189 HL_77805.2 | |
| HL_5ON6_082 | 1/6/243:250 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V88_191 HL_27930.1 | |
| HL_5ON6_083 | 1/6/276:279 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_53837.1 | |
| HL_5ON6_084 | 1/6/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_5ON6_085 | 1/6/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_5ON6_086 | 1/6/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_5ON6_087 | 1/6/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_5ON6_088 | 1/6/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_5ON6_090 | 1/6/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_5ON6_091 | 1/6/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_5ON6_094 | 1/6/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_5ON6_095 | 1/6/777:783 | No text annotation Not in a motif group | homologous HL_4V88_204 HL_97896.2 | |
| HL_5ON6_096 | 1/6/828:844 | No text annotation Not in a motif group | homologous HL_8C3A_210 HL_07579.3 | |
| HL_5ON6_097 | 1/6/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_5ON6_098 | 1/6/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_5ON6_099 | 1/6/997:1007 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_5ON6_100 | 1/6/1055:1064 | No text annotation Not in a motif group | homologous HL_4V88_209 HL_32255.1 | |
| HL_5ON6_101 | 1/6/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_5ON6_102 | 1/6/1121:1126 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_5ON6_103 | 1/6/1188:1197 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_5ON6_104 | 1/6/1237:1248 | No text annotation Not in a motif group | ||
| HL_5ON6_105 | 1/6/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_5ON6_106 | 1/6/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_5ON6_107 | 1/6/1359:1364 | No text annotation Not in a motif group | homologous HL_4V88_216 HL_10278.1 | |
| HL_5ON6_108 | 1/6/1396:1402 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_5ON6_109 | 1/6/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_5ON6_110 | 1/6/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_5ON6_111 | 1/6/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_5ON6_113 | 1/6/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 | |
| HL_5ON6_114 | 1/A/7:17 | No text annotation Not in a motif group | geometric HL_4V88_186 HL_89881.2 | |
| HL_5ON6_115 | 1/A/70:81 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_5ON6_116 | 1/A/154:160 | Other HL Not in a motif group | geometric HL_4V88_188 HL_76539.2 | |
| HL_5ON6_119 | 1/A/243:250 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V88_191 HL_27930.1 | |
| HL_5ON6_120 | 1/A/276:279 | No text annotation Not in a motif group | geometric HL_4WF9_037 HL_94803.1 | |
| HL_5ON6_121 | 1/A/330:338 | No text annotation Not in a motif group | geometric HL_4V88_193 HL_69023.2 | |
| HL_5ON6_122 | 1/A/368:373 | No text annotation Not in a motif group | geometric HL_4V88_194 HL_50142.2 | |
| HL_5ON6_123 | 1/A/393:404 | No text annotation Not in a motif group | geometric HL_4V88_195 HL_84288.1 | |
| HL_5ON6_124 | 1/A/414:419 | UNCG Not in a motif group | geometric HL_4V88_196 HL_03562.2 | |
| HL_5ON6_125 | 1/A/450:456 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_5ON6_126 | 1/A/485:502 | No text annotation Not in a motif group | ||
| HL_5ON6_127 | 1/A/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_5ON6_128 | 1/A/569:574 | Other HL Not in a motif group | geometric HL_4V88_200 HL_53845.1 | |
| HL_5ON6_129 | 1/A/703:735 | No text annotation Not in a motif group | ||
| HL_5ON6_130 | 1/A/764:772 | No text annotation Not in a motif group | geometric HL_4V88_203 HL_46766.2 | |
| HL_5ON6_131 | 1/A/776:784 | No text annotation Not in a motif group | ||
| HL_5ON6_132 | 1/A/829:843 | No text annotation Not in a motif group | geometric HL_4V88_205 HL_96598.1 | |
| HL_5ON6_133 | 1/A/900:909 | No text annotation Not in a motif group | geometric HL_4V88_206 HL_12326.1 | |
| HL_5ON6_134 | 1/A/937:942 | Other HL Not in a motif group | geometric HL_4V88_207 HL_87030.2 | |
| HL_5ON6_135 | 1/A/997:1007 | No text annotation Not in a motif group | geometric HL_4V88_208 HL_12326.1 | |
| HL_5ON6_136 | 1/A/1054:1065 | No text annotation Not in a motif group | ||
| HL_5ON6_137 | 1/A/1084:1089 | Other HL Not in a motif group | geometric HL_4V88_210 HL_42097.1 | |
| HL_5ON6_138 | 1/A/1121:1126 | GNRA Not in a motif group | geometric HL_4LFB_020 HL_42097.1 | |
| HL_5ON6_139 | 1/A/1188:1197 | No text annotation Not in a motif group | geometric HL_4V88_212 HL_73530.2 | |
| HL_5ON6_140 | 1/A/1238:1247 | No text annotation Not in a motif group | geometric HL_4V88_213 HL_53597.2 | |
| HL_5ON6_141 | 1/A/1296:1301 | GNRA Not in a motif group | geometric HL_4V88_214 HL_42097.1 | |
| HL_5ON6_142 | 1/A/1309:1316 | No text annotation Not in a motif group | geometric HL_4V88_215 HL_71554.2 | |
| HL_5ON6_143 | 1/A/1359:1364 | No text annotation Not in a motif group | ||
| HL_5ON6_144 | 1/A/1396:1402 | No text annotation Not in a motif group | geometric HL_5J7L_026 HL_90617.2 | |
| HL_5ON6_145 | 1/A/1501:1506 | GNRA Not in a motif group | geometric HL_4V88_218 HL_42097.1 | |
| HL_5ON6_146 | 1/A/1550:1561 | No text annotation Not in a motif group | geometric HL_4V88_219 HL_22554.1 | |
| HL_5ON6_147 | 1/A/1594:1602 | No text annotation Not in a motif group | geometric HL_4V88_220 HL_60812.1 | |
| HL_5ON6_149 | 1/A/1778:1783 | Other HL Not in a motif group | geometric HL_4V88_222 HL_16173.1 | |
| HL_5ON6_150 | 1/AR/38:45 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.2 | |
| HL_5ON6_151 | 1/AR/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
| HL_5ON6_152 | 1/AR/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_5ON6_153 | 1/AR/132:136 | No text annotation Not in a motif group | homologous HL_8C3A_004 HL_98426.1 | |
| HL_5ON6_154 | 1/AR/194:201 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_89380.2 | |
| HL_5ON6_155 | 1/AR/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_5ON6_156 | 1/AR/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_5ON6_157 | 1/AR/278:287 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_5ON6_158 | 1/AR/303:312 | No text annotation Not in a motif group | geometric HL_4QLM_002 HL_12078.2 | |
| HL_5ON6_159 | 1/AR/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.1 | |
| HL_5ON6_160 | 1/AR/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.1 | |
| HL_5ON6_161 | 1/AR/541:550 | No text annotation Not in a motif group | ||
| HL_5ON6_162 | 1/AR/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_5ON6_163 | 1/AR/640:649 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_89380.2 | |
| HL_5ON6_164 | 1/AR/686:694 | No text annotation Not in a motif group | homologous HL_5TBW_015 HL_03345.1 | |
| HL_5ON6_165 | 1/AR/707:712 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_42097.1 | |
| HL_5ON6_166 | 1/AR/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_5ON6_167 | 1/AR/763:768 | No text annotation Not in a motif group | geometric HL_5TBW_018 HL_34168.2 | |
| HL_5ON6_168 | 1/AR/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.1 | |
| HL_5ON6_169 | 1/AR/876:885 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.6 | |
| HL_5ON6_170 | 1/AR/910:918 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_5ON6_171 | 1/AR/958:963 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_94803.1 | |
| HL_5ON6_173 | 1/AR/1076:1083 | No text annotation Not in a motif group | geometric HL_5TBW_024 HL_71554.2 | |
| HL_5ON6_174 | 1/AR/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_5ON6_175 | 1/AR/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_5ON6_176 | 1/AR/1238:1250 | No text annotation Not in a motif group | ||
| HL_5ON6_177 | 1/AR/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_5ON6_178 | 1/AR/1347:1357 | No text annotation Not in a motif group | homologous HL_5TBW_029 HL_89098.1 | |
| HL_5ON6_179 | 1/AR/1403:1408 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_42097.1 | |
| HL_5ON6_180 | 1/AR/1462:1470 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_89380.2 | |
| HL_5ON6_181 | 1/AR/1506:1512 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_5ON6_182 | 1/AR/1544:1549 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_76539.2 | |
| HL_5ON6_184 | 1/AR/1599:1608 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_5ON6_185 | 1/AR/1634:1639 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_42097.1 | |
| HL_5ON6_186 | 1/AR/1680:1688 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_60812.1 | |
| HL_5ON6_187 | 1/AR/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.2 | |
| HL_5ON6_188 | 1/AR/1758:1767 | No text annotation Not in a motif group | ||
| HL_5ON6_189 | 1/AR/1792:1796 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_38927.2 | |
| HL_5ON6_190 | 1/AR/1844:1851 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.2 | |
| HL_5ON6_191 | 1/AR/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_5ON6_192 | 1/AR/1923:1928 | UNCG Not in a motif group | geometric HL_4LFB_011 HL_03562.2 | |
| HL_5ON6_194 | 1/AR/2110:2114 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_5ON6_195 | 1/AR/2135:2145 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.5 | |
| HL_5ON6_196 | 1/AR/2164:2170 | GNRA Not in a motif group | homologous HL_5TBW_047 HL_42097.1 | |
| HL_5ON6_197 | 1/AR/2220:2225 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_42097.1 | |
| HL_5ON6_198 | 1/AR/2253:2263 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_5ON6_199 | 1/AR/2292:2300 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_51824.1 | |
| HL_5ON6_200 | 1/AR/2369:2378 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.6 | |
| HL_5ON6_203 | 1/AR/2616:2624 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_53171.2 | |
| HL_5ON6_204 | 1/AR/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_5ON6_205 | 1/AR/2673:2681 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.4 | |
| HL_5ON6_206 | 1/AR/2693:2700 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.2 | |
| HL_5ON6_207 | 1/AR/2724:2732 | No text annotation Not in a motif group | homologous HL_5TBW_058 HL_92229.2 | |
| HL_5ON6_208 | 1/AR/2744:2749 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_42097.1 | |
| HL_5ON6_209 | 1/AR/2776:2784 | No text annotation Not in a motif group | homologous HL_5TBW_060 HL_96598.1 | |
| HL_5ON6_210 | 1/AR/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_5ON6_211 | 1/AR/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_5ON6_212 | 1/AR/2920:2926 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_43656.2 | |
| HL_5ON6_213 | 1/AR/2963:2968 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.1 | |
| HL_5ON6_214 | 1/AR/3025:3030 | GNRA Not in a motif group | geometric HL_5TBW_065 HL_42097.1 | |
| HL_5ON6_215 | 1/AR/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_5ON6_216 | 1/AR/3110:3124 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.7 | |
| HL_5ON6_217 | 1/AR/3193:3199 | Other HL Not in a motif group | geometric HL_5J7L_200 HL_34168.2 | |
| HL_5ON6_218 | 1/AR/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_5ON6_219 | 1/AR/3303:3311 | No text annotation Not in a motif group | homologous HL_5TBW_070 HL_27930.1 | |
| HL_5ON6_220 | 1/AR/3350:3353 | No text annotation Not in a motif group | homologous HL_5TBW_071 HL_53837.1 | |
| HL_5ON6_221 | 1/AS/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_5ON6_222 | 1/AS/88:93 | GNRA Not in a motif group | geometric HL_5TBW_186 HL_42097.1 | |
| HL_5ON6_223 | 1/AT/73:78 | Other HL Not in a motif group | geometric HL_5TBW_074 HL_50142.2 | |
| HL_5ON6_224 | 1/AT/108:114 | No text annotation Not in a motif group | geometric HL_5TBW_075 HL_87939.1 | |
| HL_5ON6_225 | 1/AT/124:129 | No text annotation Not in a motif group | geometric HL_5TBW_076 HL_96851.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5ON6_009 | No text annotation | ||
| HL_5ON6_018 | No text annotation | ||
| HL_5ON6_019 | GNRA | ||
| HL_5ON6_020 | No text annotation | ||
| HL_5ON6_021 | No text annotation | ||
| HL_5ON6_023 | GNRA | ||
| HL_5ON6_024 | No text annotation | ||
| HL_5ON6_027 | No text annotation | ||
| HL_5ON6_028 | No text annotation | ||
| HL_5ON6_029 | No text annotation | ||
| HL_5ON6_031 | T-loop with 2 stacked bulged bases | ||
| HL_5ON6_032 | No text annotation | ||
| HL_5ON6_033 | Other HL | ||
| HL_5ON6_034 | No text annotation | ||
| HL_5ON6_035 | No text annotation | ||
| HL_5ON6_036 | GNRA | ||
| HL_5ON6_037 | No text annotation | ||
| HL_5ON6_038 | No text annotation | ||
| HL_5ON6_039 | No text annotation | ||
| HL_5ON6_040 | No text annotation | ||
| HL_5ON6_041 | No text annotation | ||
| HL_5ON6_042 | GNRA with one bulged base | ||
| HL_5ON6_043 | UNCG | ||
| HL_5ON6_044 | No text annotation | ||
| HL_5ON6_045 | No text annotation | ||
| HL_5ON6_046 | No text annotation | ||
| HL_5ON6_047 | GNRA | ||
| HL_5ON6_048 | Other HL | ||
| HL_5ON6_049 | No text annotation | ||
| HL_5ON6_050 | No text annotation | ||
| HL_5ON6_051 | No text annotation | ||
| HL_5ON6_052 | No text annotation | ||
| HL_5ON6_053 | No text annotation | ||
| HL_5ON6_054 | No text annotation | ||
| HL_5ON6_055 | No text annotation | ||
| HL_5ON6_056 | No text annotation | ||
| HL_5ON6_057 | No text annotation | ||
| HL_5ON6_058 | No text annotation | ||
| HL_5ON6_059 | No text annotation | ||
| HL_5ON6_060 | GNRA | ||
| HL_5ON6_061 | No text annotation | ||
| HL_5ON6_065 | GNRA | ||
| HL_5ON6_075 | No text annotation | ||
| HL_5ON6_079 | No text annotation | ||
| HL_5ON6_089 | No text annotation | ||
| HL_5ON6_092 | No text annotation | ||
| HL_5ON6_093 | No text annotation | ||
| HL_5ON6_112 | No text annotation | ||
| HL_5ON6_117 | No text annotation | ||
| HL_5ON6_118 | No text annotation | ||
| HL_5ON6_148 | No text annotation | ||
| HL_5ON6_172 | GNRA | ||
| HL_5ON6_183 | No text annotation | ||
| HL_5ON6_193 | No text annotation | ||
| HL_5ON6_201 | No text annotation | ||
| HL_5ON6_202 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5ON6_001 | 1/1/3:4, 1/4/155:156 | No text annotation Not in a motif group | ||
| IL_5ON6_002 | 1/1/7:8, 1/4/150:152 | Single bulged C Not in a motif group | homologous IL_5TBW_002 IL_61258.12 | |
| IL_5ON6_003 | 1/1/13:15, 1/4/144:145 | Single bulged U Not in a motif group | homologous IL_5TBW_003 IL_83039.13 | |
| IL_5ON6_004 | 1/1/27:28, 1/1/56:58 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_76488.2 | |
| IL_5ON6_005 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS Not in a motif group | homologous IL_5TBW_005 IL_35728.2 | |
| IL_5ON6_006 | 1/1/82:89, 1/1/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_5ON6_007 | 1/1/123:124, 1/1/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_5ON6_008 | 1/1/125:127, 1/1/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_5ON6_009 | 1/1/163:165, 1/1/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_5ON6_010 | 1/1/169:170, 1/1/248:253 | No text annotation Not in a motif group | homologous IL_5TBW_010 IL_74684.1 | |
| IL_5ON6_011 | 1/1/177:179, 1/1/237:241 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_011 IL_63450.2 | |
| IL_5ON6_012 | 1/1/189:191, 1/1/204:205 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.13 | |
| IL_5ON6_013 | 1/1/337:339, 1/4/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_5ON6_014 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_5ON6_015 | 1/1/404:410, 1/4/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_5ON6_016 | 1/1/429:431, 1/1/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_5ON6_018 | 1/1/512:513, 1/1/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.2 | |
| IL_5ON6_019 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_5ON6_020 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_5ON6_021 | 1/1/668:670, 1/1/792:794 | No text annotation Not in a motif group | homologous IL_5TBW_021 IL_95997.1 | |
| IL_5ON6_022 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_5ON6_023 | 1/1/725:728, 1/1/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.1 | |
| IL_5ON6_024 | 1/1/752:753, 1/1/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.2 | |
| IL_5ON6_025 | 1/1/755:756, 1/1/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.13 | |
| IL_5ON6_027 | 1/1/803:805, 1/1/938:940 | No text annotation Not in a motif group | homologous IL_5TBW_027 IL_95997.1 | |
| IL_5ON6_028 | 1/1/805:809, 1/1/931:938 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.6 | |
| IL_5ON6_034 | 1/1/954:956, 1/1/965:967 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_95997.1 | |
| IL_5ON6_035 | 1/1/969:970, 1/1/1111:1113 | Single stack bend Not in a motif group | homologous IL_5TBW_035 IL_76488.2 | |
| IL_5ON6_036 | 1/1/977:981, 1/1/1102:1104 | No text annotation Not in a motif group | homologous IL_5TBW_036 IL_67474.4 | |
| IL_5ON6_037 | 1/1/983:985, 1/1/1099:1100 | Single bulged G Not in a motif group | homologous IL_5TBW_037 IL_00225.2 | |
| IL_5ON6_046 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_5ON6_047 | 1/1/1123:1125, 1/1/1133:1135 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_047 IL_52767.2 | |
| IL_5ON6_048 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.2 | |
| IL_5ON6_049 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.7 | |
| IL_5ON6_050 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.13 | |
| IL_5ON6_051 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation Not in a motif group | homologous IL_5TBW_051 IL_27086.1 | |
| IL_5ON6_052 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_5ON6_053 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.13 | |
| IL_5ON6_054 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn Not in a motif group | homologous IL_5TBW_054 IL_90538.4 | |
| IL_5ON6_057 | 1/1/1376:1378, 1/1/1428:1431 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_5ON6_058 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_5ON6_059 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_5ON6_060 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_5ON6_061 | 1/1/1444:1450, 1/1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_5ON6_091 | 1/1/2391:2394, 1/1/2986:2988 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_5ON6_102 | 1/1/2824:2826, 1/1/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_5ON6_103 | 1/1/2826:2828, 1/1/2862:2863 | Major groove platform Not in a motif group | homologous IL_5TBW_104 IL_76223.2 | |
| IL_5ON6_104 | 1/1/2828:2830, 1/1/2858:2862 | No text annotation Not in a motif group | homologous IL_8C3A_113 IL_92788.2 | |
| IL_5ON6_105 | 1/1/2835:2839, 1/1/2849:2853 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.8 | |
| IL_5ON6_106 | 1/1/2876:2877, 1/1/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_5ON6_107 | 1/1/2879:2881, 1/1/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_5ON6_108 | 1/1/2881:2882, 1/1/2940:2943 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_109 IL_71530.2 | |
| IL_5ON6_109 | 1/1/2889:2891, 1/1/2912:2914 | No text annotation Not in a motif group | homologous IL_5TBW_110 IL_51629.2 | |
| IL_5ON6_110 | 1/1/2891:2892, 1/1/2909:2912 | No text annotation Not in a motif group | homologous IL_8C3A_119 IL_95601.3 | |
| IL_5ON6_111 | 1/1/2918:2920, 1/1/2926:2928 | No text annotation Not in a motif group | homologous IL_5TBW_112 IL_95997.1 | |
| IL_5ON6_113 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_5ON6_114 | 1/1/3012:3014, 1/1/3040:3042 | No text annotation Not in a motif group | homologous IL_5TBW_115 IL_95997.1 | |
| IL_5ON6_115 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_116 IL_04346.7 | |
| IL_5ON6_116 | 1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_5ON6_117 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_5ON6_118 | 1/1/3063:3064, 1/1/3077:3080 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_5ON6_119 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN Not in a motif group | homologous IL_5TBW_120 IL_89002.2 | |
| IL_5ON6_122 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | homologous IL_5TBW_123 IL_37497.2 | |
| IL_5ON6_123 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_5ON6_124 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_5ON6_125 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation Not in a motif group | homologous IL_5TBW_126 IL_19389.6 | |
| IL_5ON6_126 | 1/1/3233:3235, 1/1/3252:3254 | No text annotation Not in a motif group | geometric IL_5TBW_127 IL_95997.1 | |
| IL_5ON6_127 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_128 IL_30621.2 | |
| IL_5ON6_128 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U Not in a motif group | homologous IL_5TBW_130 IL_83039.13 | |
| IL_5ON6_129 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_5ON6_130 | 1/1/3328:3330, 1/1/3373:3378 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.2 | |
| IL_5ON6_131 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation Not in a motif group | homologous IL_5TBW_133 IL_83162.5 | |
| IL_5ON6_132 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U Not in a motif group | geometric IL_5TBW_134 IL_83039.13 | |
| IL_5ON6_133 | 1/1/3342:3345, 1/1/3360:3363 | tWS-tSW Not in a motif group | homologous IL_5TBW_135 IL_09705.9 | |
| IL_5ON6_134 | 1/1/3345:3347, 1/1/3358:3360 | No text annotation Not in a motif group | geometric IL_7A0S_031 IL_95997.1 | |
| IL_5ON6_135 | 1/1/3349:3350, 1/1/3353:3356 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_136 IL_59677.2 | |
| IL_5ON6_136 | 1/3/15:16, 1/3/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_5ON6_137 | 1/3/21:27, 1/3/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_5ON6_138 | 1/3/28:29, 1/3/49:52 | Minor groove platform Not in a motif group | homologous IL_5TBW_374 IL_63797.2 | |
| IL_5ON6_139 | 1/3/29:30, 1/3/47:49 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_5ON6_140 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
| IL_5ON6_141 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_5ON6_142 | 1/3/84:87, 1/3/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_5ON6_143 | 1/4/44:64, 1/4/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_5ON6_144 | 1/4/64:66, 1/4/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_5ON6_145 | 1/4/68:69, 1/4/89:91 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 | |
| IL_5ON6_146 | 1/6/24:26, 1/6/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_5ON6_147 | 1/6/35:37, 1/6/471:473 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_5ON6_148 | 1/6/37:41, 1/6/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_5ON6_149 | 1/6/42:48, 1/6/431:433 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_5ON6_150 | 1/6/50:52, 1/6/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_5ON6_151 | 1/6/58:63, 1/6/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_5ON6_152 | 1/6/64:69, 1/6/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_5ON6_153 | 1/6/109:112, 1/6/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_5ON6_154 | 1/6/113:116, 1/6/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_5ON6_155 | 1/6/117:122, 1/6/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_5ON6_156 | 1/6/143:149, 1/6/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_5ON6_157 | 1/6/150:152, 1/6/162:164 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_5ON6_158 | 1/6/186:189, 1/6/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_5ON6_159 | 1/6/204:206, 1/6/259:263 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_05564.2 | |
| IL_5ON6_160 | 1/6/206:208, 1/6/257:259 | No text annotation Not in a motif group | geometric IL_4V88_398 IL_95997.1 | |
| IL_5ON6_161 | 1/6/213:243, 1/6/250:252 | No text annotation Not in a motif group | ||
| IL_5ON6_162 | 1/6/265:267, 1/6/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_5ON6_163 | 1/6/270:273, 1/6/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_5ON6_164 | 1/6/275:276, 1/6/279:281 | Single bulged U Not in a motif group | homologous IL_4V88_401 IL_83039.13 | |
| IL_5ON6_165 | 1/6/311:316, 1/6/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_5ON6_166 | 1/6/318:323, 1/6/345:346 | No text annotation Not in a motif group | homologous IL_4V88_403 IL_48100.2 | |
| IL_5ON6_167 | 1/6/363:365, 1/6/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_5ON6_168 | 1/6/389:391, 1/6/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_5ON6_169 | 1/6/411:413, 1/6/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_5ON6_170 | 1/6/439:441, 1/6/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_5ON6_171 | 1/6/443:448, 1/6/458:461 | C-loop with extra cWW pair Not in a motif group | homologous IL_4V88_408 IL_93630.2 | |
| IL_5ON6_172 | 1/6/481:482, 1/6/505:507 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.2 | |
| IL_5ON6_173 | 1/6/516:520, 1/6/532:536 | Triple sheared Not in a motif group | geometric IL_5J7L_338 IL_56467.8 | |
| IL_5ON6_174 | 1/6/550:557, 1/6/587:588 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_5ON6_175 | 1/6/557:559, 1/6/586:587 | Single bulged U Not in a motif group | homologous IL_4V88_414 IL_83039.13 | |
| IL_5ON6_176 | 1/6/562:568, 1/6/575:583 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_5ON6_177 | 1/6/616:622, 1/6/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_5ON6_178 | 1/6/624:626, 1/6/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_5ON6_179 | 1/6/627:631, 1/6/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_5ON6_180 | 1/6/646:648, 1/6/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_95997.1 | |
| IL_5ON6_184 | 1/6/746:747, 1/6/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_5ON6_185 | 1/6/748:750, 1/6/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_5ON6_186 | 1/6/751:760, 1/6/790:798 | No text annotation Not in a motif group | ||
| IL_5ON6_187 | 1/6/819:822, 1/6/850:852 | No text annotation Not in a motif group | homologous IL_4V88_426 IL_95997.1 | |
| IL_5ON6_188 | 1/6/865:866, 1/6/962:965 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.2 | |
| IL_5ON6_189 | 1/6/868:870, 1/6/957:960 | Isolated cWH basepair Not in a motif group | geometric IL_3SJ2_002 IL_51629.2 | |
| IL_5ON6_190 | 1/6/871:874, 1/6/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_5ON6_191 | 1/6/874:878, 1/6/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_5ON6_192 | 1/6/885:888, 1/6/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_5ON6_193 | 1/6/893:899, 1/6/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_5ON6_194 | 1/6/985:990, 1/6/1014:1016 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_5ON6_195 | 1/6/990:994, 1/6/1010:1014 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_436 IL_17136.1 | |
| IL_5ON6_196 | 1/6/1034:1036, 1/6/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_5ON6_197 | 1/6/1041:1044, 1/6/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_5ON6_198 | 1/6/1051:1053, 1/6/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_5ON6_199 | 1/6/1111:1118, 1/6/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_5ON6_200 | 1/6/1146:1147, 1/6/1630:1632 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_5ON6_201 | 1/6/1149:1151, 1/6/1627:1628 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_5ON6_202 | 1/6/1157:1160, 1/6/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_5ON6_203 | 1/6/1173:1175, 1/6/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_5ON6_204 | 1/6/1178:1179, 1/6/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_5ON6_205 | 1/6/1213:1215, 1/6/1448:1450 | No text annotation Not in a motif group | homologous IL_4V88_446 IL_95997.1 | |
| IL_5ON6_206 | 1/6/1234:1236, 1/6/1249:1251 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_5ON6_207 | 1/6/1268:1270, 1/6/1440:1441 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_5ON6_208 | 1/6/1272:1276, 1/6/1436:1438 | Isolated cWS basepair Not in a motif group | geometric IL_4V88_450 IL_76319.2 | |
| IL_5ON6_209 | 1/6/1276:1278, 1/6/1430:1436 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_5ON6_210 | 1/6/1280:1281, 1/6/1426:1428 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_5ON6_211 | 1/6/1290:1292, 1/6/1323:1325 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_5ON6_212 | 1/6/1306:1308, 1/6/1317:1318 | Minor groove platform Not in a motif group | homologous IL_4V88_454 IL_93353.1 | |
| IL_5ON6_213 | 1/6/1339:1342, 1/6/1383:1385 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_5ON6_214 | 1/6/1345:1349, 1/6/1376:1380 | No text annotation Not in a motif group | ||
| IL_5ON6_215 | 1/6/1352:1354, 1/6/1369:1373 | No text annotation Not in a motif group | homologous IL_4V88_457 IL_95997.1 | |
| IL_5ON6_216 | 1/6/1389:1391, 1/6/1407:1412 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_458 IL_58032.1 | |
| IL_5ON6_217 | 1/6/1480:1487, 1/6/1519:1527 | No text annotation Not in a motif group | homologous IL_4V88_459 IL_10447.1 | |
| IL_5ON6_218 | 1/6/1488:1494, 1/6/1513:1518 | No text annotation Not in a motif group | ||
| IL_5ON6_219 | 1/6/1495:1498, 1/6/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_5ON6_220 | 1/6/1540:1545, 1/6/1566:1571 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_5ON6_221 | 1/6/1636:1638, 1/6/1764:1767 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_5ON6_222 | 1/6/1638:1641, 1/6/1760:1764 | No text annotation Not in a motif group | homologous IL_4V88_464 IL_99670.1 | |
| IL_5ON6_223 | 1/6/1642:1644, 1/6/1757:1759 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_5ON6_224 | 1/6/1644:1647, 1/6/1753:1757 | Non canonical cWW and near pair Not in a motif group | homologous IL_4V88_466 IL_42334.1 | |
| IL_5ON6_225 | 1/6/1650:1652, 1/6/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_5ON6_226 | 1/6/1653:1656, 1/6/1744:1747 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_5ON6_227 | 1/6/1656:1658, 1/6/1743:1744 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.13 | |
| IL_5ON6_228 | 1/6/1665:1667, 1/6/1734:1736 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_5ON6_229 | 1/6/1669:1672, 1/6/1729:1732 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_5ON6_230 | 1/6/1672:1674, 1/6/1727:1729 | No text annotation Not in a motif group | geometric IL_4V88_472 IL_95997.1 | |
| IL_5ON6_231 | 1/6/1675:1678, 1/6/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_473 IL_30621.2 | |
| IL_5ON6_232 | 1/6/1678:1682, 1/6/1719:1723 | Triple sheared Not in a motif group | geometric IL_4V88_474 IL_56467.8 | |
| IL_5ON6_233 | 1/6/1683:1685, 1/6/1716:1718 | No text annotation Not in a motif group | homologous IL_4V88_475 IL_95997.1 | |
| IL_5ON6_235 | 1/A/24:26, 1/A/600:601 | Single bulged C Not in a motif group | geometric IL_4V88_384 IL_61258.12 | |
| IL_5ON6_236 | 1/A/35:37, 1/A/471:473 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_5ON6_237 | 1/A/37:41, 1/A/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_5ON6_239 | 1/A/50:52, 1/A/428:429 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_93353.1 | |
| IL_5ON6_240 | 1/A/58:63, 1/A/87:89 | No text annotation Not in a motif group | geometric IL_4V88_389 IL_95004.1 | |
| IL_5ON6_241 | 1/A/64:69, 1/A/82:86 | No text annotation Not in a motif group | geometric IL_4V88_390 IL_77691.1 | |
| IL_5ON6_242 | 1/A/109:112, 1/A/302:305 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_391 IL_30621.2 | |
| IL_5ON6_243 | 1/A/113:116, 1/A/300:301 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_5ON6_244 | 1/A/117:122, 1/A/295:299 | No text annotation Not in a motif group | geometric IL_4V88_393 IL_64181.2 | |
| IL_5ON6_246 | 1/A/150:152, 1/A/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_6RA4_002 IL_51629.2 | |
| IL_5ON6_247 | 1/A/186:189, 1/A/196:199 | Double sheared Not in a motif group | geometric IL_4KZD_002 IL_09705.9 | |
| IL_5ON6_248 | 1/A/204:206, 1/A/259:263 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.2 | |
| IL_5ON6_249 | 1/A/206:208, 1/A/257:259 | No text annotation Not in a motif group | geometric IL_4V88_398 IL_95997.1 | |
| IL_5ON6_250 | 1/A/265:267, 1/A/288:289 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_37497.2 | |
| IL_5ON6_251 | 1/A/270:273, 1/A/283:285 | No text annotation Not in a motif group | geometric IL_4V88_400 IL_47298.1 | |
| IL_5ON6_252 | 1/A/274:276, 1/A/279:282 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_5ON6_253 | 1/A/311:316, 1/A/348:355 | Kink-turn with non-sequential stacking Not in a motif group | geometric IL_4V88_402 IL_45067.2 | |
| IL_5ON6_255 | 1/A/363:365, 1/A/376:381 | No text annotation Not in a motif group | geometric IL_4V88_404 IL_11347.1 | |
| IL_5ON6_256 | 1/A/389:391, 1/A/406:408 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_405 IL_51629.2 | |
| IL_5ON6_257 | 1/A/411:413, 1/A/420:422 | Isolated near basepair Not in a motif group | geometric IL_4V88_406 IL_52767.2 | |
| IL_5ON6_258 | 1/A/439:441, 1/A/463:464 | Single bulged U Not in a motif group | geometric IL_4V88_407 IL_83039.13 | |
| IL_5ON6_259 | 1/A/443:448, 1/A/458:461 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
| IL_5ON6_260 | 1/A/479:485, 1/A/502:509 | No text annotation Not in a motif group | ||
| IL_5ON6_261 | 1/A/517:520, 1/A/532:535 | Double sheared Not in a motif group | geometric IL_4LFB_060 IL_09705.9 | |
| IL_5ON6_262 | 1/A/550:557, 1/A/587:588 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_5ON6_263 | 1/A/557:559, 1/A/586:587 | Single bulged U Not in a motif group | geometric IL_4V88_414 IL_83039.13 | |
| IL_5ON6_264 | 1/A/562:568, 1/A/575:583 | No text annotation Not in a motif group | homologous IL_8C3A_425 IL_55871.1 | |
| IL_5ON6_265 | 1/A/616:622, 1/A/1104:1105 | No text annotation Not in a motif group | geometric IL_4V88_416 IL_69996.1 | |
| IL_5ON6_266 | 1/A/624:626, 1/A/973:975 | No text annotation Not in a motif group | geometric IL_4V88_417 IL_95997.1 | |
| IL_5ON6_267 | 1/A/627:631, 1/A/968:972 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_418 IL_17136.1 | |
| IL_5ON6_268 | 1/A/646:648, 1/A/686:688 | No text annotation Not in a motif group | geometric IL_1SI2_002 IL_53251.2 | |
| IL_5ON6_269 | 1/A/652:658, 1/A/676:682 | No text annotation Not in a motif group | ||
| IL_5ON6_275 | 1/A/867:870, 1/A/957:961 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_5ON6_276 | 1/A/871:874, 1/A/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_5ON6_277 | 1/A/874:878, 1/A/950:953 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_5ON6_278 | 1/A/885:889, 1/A/923:927 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_5ON6_281 | 1/A/985:990, 1/A/1014:1016 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_5ON6_282 | 1/A/990:994, 1/A/1010:1014 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_436 IL_17136.1 | |
| IL_5ON6_283 | 1/A/1034:1036, 1/A/1095:1101 | No text annotation Not in a motif group | geometric IL_4V88_437 IL_19557.3 | |
| IL_5ON6_284 | 1/A/1041:1044, 1/A/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.2 | |
| IL_5ON6_285 | 1/A/1050:1053, 1/A/1066:1068 | No text annotation Not in a motif group | geometric IL_7RQB_034 IL_95997.1 | |
| IL_5ON6_286 | 1/A/1111:1118, 1/A/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | geometric IL_4V88_440 IL_24606.2 | |
| IL_5ON6_287 | 1/A/1146:1147, 1/A/1630:1632 | Single bulged A Not in a motif group | geometric IL_4LFB_035 IL_37497.2 | |
| IL_5ON6_288 | 1/A/1149:1151, 1/A/1627:1628 | Single bulged G Not in a motif group | geometric IL_4V88_442 IL_00225.2 | |
| IL_5ON6_289 | 1/A/1156:1160, 1/A/1617:1622 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
| IL_5ON6_290 | 1/A/1173:1175, 1/A/1464:1466 | No text annotation Not in a motif group | geometric IL_4V88_444 IL_95997.1 | |
| IL_5ON6_291 | 1/A/1178:1179, 1/A/1459:1461 | Minor groove platform Not in a motif group | geometric IL_4V88_445 IL_42622.2 | |
| IL_5ON6_292 | 1/A/1213:1215, 1/A/1448:1450 | No text annotation Not in a motif group | geometric IL_4V88_446 IL_95997.1 | |
| IL_5ON6_293 | 1/A/1223:1230, 1/A/1257:1260 | No text annotation Not in a motif group | ||
| IL_5ON6_294 | 1/A/1230:1233, 1/A/1252:1257 | No text annotation Not in a motif group | ||
| IL_5ON6_295 | 1/A/1234:1236, 1/A/1249:1251 | No text annotation Not in a motif group | geometric IL_4V88_448 IL_10023.1 | |
| IL_5ON6_296 | 1/A/1268:1270, 1/A/1440:1441 | Single bulged U Not in a motif group | geometric IL_4V88_449 IL_83039.13 | |
| IL_5ON6_297 | 1/A/1272:1276, 1/A/1436:1438 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_5ON6_298 | 1/A/1276:1278, 1/A/1430:1436 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_451 IL_92788.2 | |
| IL_5ON6_299 | 1/A/1280:1281, 1/A/1426:1428 | Single bulged A Not in a motif group | geometric IL_4V88_452 IL_37497.2 | |
| IL_5ON6_300 | 1/A/1290:1292, 1/A/1323:1325 | No text annotation Not in a motif group | geometric IL_5UNE_001 IL_53251.2 | |
| IL_5ON6_301 | 1/A/1306:1308, 1/A/1317:1318 | Minor groove platform Not in a motif group | geometric IL_4V88_454 IL_93353.1 | |
| IL_5ON6_302 | 1/A/1339:1342, 1/A/1383:1385 | No text annotation Not in a motif group | geometric IL_4V88_455 IL_10023.1 | |
| IL_5ON6_303 | 1/A/1345:1349, 1/A/1376:1380 | No text annotation Not in a motif group | ||
| IL_5ON6_304 | 1/A/1352:1355, 1/A/1368:1373 | No text annotation Not in a motif group | ||
| IL_5ON6_305 | 1/A/1389:1391, 1/A/1407:1412 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_458 IL_58032.1 | |
| IL_5ON6_306 | 1/A/1480:1487, 1/A/1519:1527 | No text annotation Not in a motif group | geometric IL_4V88_459 IL_10447.1 | |
| IL_5ON6_307 | 1/A/1488:1494, 1/A/1513:1518 | No text annotation Not in a motif group | geometric IL_4V88_460 IL_75461.4 | |
| IL_5ON6_308 | 1/A/1495:1498, 1/A/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_461 IL_30621.2 | |
| IL_5ON6_309 | 1/A/1540:1545, 1/A/1566:1571 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_5ON6_310 | 1/A/1636:1638, 1/A/1764:1767 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_5ON6_311 | 1/A/1638:1641, 1/A/1760:1764 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5ON6_312 | 1/A/1642:1644, 1/A/1757:1759 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_5ON6_313 | 1/A/1644:1647, 1/A/1753:1757 | Non canonical cWW and near pair Not in a motif group | geometric IL_4V88_466 IL_42334.1 | |
| IL_5ON6_314 | 1/A/1650:1652, 1/A/1748:1750 | AA cWW Not in a motif group | geometric IL_5ED1_002 IL_95997.1 | |
| IL_5ON6_315 | 1/A/1653:1656, 1/A/1744:1747 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_5ON6_316 | 1/A/1656:1658, 1/A/1743:1744 | Single bulged U Not in a motif group | geometric IL_6CZR_156 IL_83039.13 | |
| IL_5ON6_317 | 1/A/1665:1667, 1/A/1734:1736 | No text annotation Not in a motif group | geometric IL_4V88_470 IL_51629.2 | |
| IL_5ON6_318 | 1/A/1669:1672, 1/A/1729:1732 | Double sheared Not in a motif group | geometric IL_4V88_471 IL_09705.9 | |
| IL_5ON6_319 | 1/A/1672:1674, 1/A/1727:1729 | No text annotation Not in a motif group | geometric IL_4V88_472 IL_95997.1 | |
| IL_5ON6_320 | 1/A/1675:1678, 1/A/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_5ON6_321 | 1/A/1678:1682, 1/A/1719:1723 | Triple sheared Not in a motif group | geometric IL_4V88_474 IL_56467.8 | |
| IL_5ON6_323 | 1/AR/3:4, 1/AT/155:156 | No text annotation Not in a motif group | ||
| IL_5ON6_324 | 1/AR/7:8, 1/AT/150:152 | Single bulged C Not in a motif group | homologous IL_5TBW_002 IL_61258.12 | |
| IL_5ON6_325 | 1/AR/13:15, 1/AT/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_5ON6_326 | 1/AR/27:28, 1/AR/56:58 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_76488.2 | |
| IL_5ON6_327 | 1/AR/31:38, 1/AR/45:53 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
| IL_5ON6_328 | 1/AR/82:89, 1/AR/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_5ON6_329 | 1/AR/123:124, 1/AR/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_5ON6_330 | 1/AR/125:127, 1/AR/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_5ON6_331 | 1/AR/163:165, 1/AR/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_5ON6_332 | 1/AR/169:174, 1/AR/244:253 | No text annotation Not in a motif group | ||
| IL_5ON6_333 | 1/AR/177:179, 1/AR/237:241 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_011 IL_63450.2 | |
| IL_5ON6_334 | 1/AR/189:191, 1/AR/204:205 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.13 | |
| IL_5ON6_335 | 1/AR/337:339, 1/AT/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_5ON6_336 | 1/AR/376:379, 1/AR/390:403 | No text annotation Not in a motif group | geometric IL_5TBW_014 IL_60992.6 | |
| IL_5ON6_337 | 1/AR/404:410, 1/AT/13:19 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5TBW_015 IL_66414.6 | |
| IL_5ON6_338 | 1/AR/429:431, 1/AR/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_5ON6_340 | 1/AR/512:513, 1/AR/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.2 | |
| IL_5ON6_341 | 1/AR/517:525, 1/AR/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_5ON6_342 | 1/AR/531:538, 1/AR/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_5ON6_343 | 1/AR/668:670, 1/AR/792:794 | No text annotation Not in a motif group | homologous IL_5TBW_021 IL_95997.1 | |
| IL_5ON6_344 | 1/AR/680:684, 1/AR/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_5ON6_345 | 1/AR/725:728, 1/AR/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.1 | |
| IL_5ON6_346 | 1/AR/752:753, 1/AR/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.2 | |
| IL_5ON6_347 | 1/AR/755:756, 1/AR/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.13 | |
| IL_5ON6_348 | 1/AR/758:763, 1/AR/768:773 | No text annotation Not in a motif group | homologous IL_5TBW_026 IL_19954.2 | |
| IL_5ON6_349 | 1/AR/803:805, 1/AR/938:940 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_95997.1 | |
| IL_5ON6_350 | 1/AR/805:809, 1/AR/931:938 | No text annotation Not in a motif group | homologous IL_5TBW_028 IL_17470.6 | |
| IL_5ON6_351 | 1/AR/833:834, 1/AR/859:861 | Single bulged G Not in a motif group | geometric IL_5TBW_029 IL_00225.2 | |
| IL_5ON6_352 | 1/AR/834:838, 1/AR/855:859 | Triple sheared Not in a motif group | homologous IL_5TBW_030 IL_56467.8 | |
| IL_5ON6_353 | 1/AR/869:872, 1/AR/888:890 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_05564.2 | |
| IL_5ON6_354 | 1/AR/873:875, 1/AR/886:887 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_5ON6_355 | 1/AR/907:909, 1/AR/919:923 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_033 IL_90991.6 | |
| IL_5ON6_356 | 1/AR/954:956, 1/AR/965:967 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_95997.1 | |
| IL_5ON6_357 | 1/AR/969:971, 1/AR/1110:1113 | No text annotation Not in a motif group | ||
| IL_5ON6_358 | 1/AR/977:982, 1/AR/1101:1104 | No text annotation Not in a motif group | homologous IL_8C3A_039 IL_59027.1 | |
| IL_5ON6_359 | 1/AR/983:985, 1/AR/1099:1100 | Single bulged G Not in a motif group | homologous IL_5TBW_037 IL_00225.2 | |
| IL_5ON6_360 | 1/AR/991:997, 1/AR/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5TBW_038 IL_93830.3 | |
| IL_5ON6_361 | 1/AR/997:998, 1/AR/1050:1052 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_42622.2 | |
| IL_5ON6_362 | 1/AR/999:1004, 1/AR/1046:1049 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_02509.1 | |
| IL_5ON6_363 | 1/AR/1006:1009, 1/AR/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_041 IL_30621.2 | |
| IL_5ON6_364 | 1/AR/1009:1011, 1/AR/1039:1041 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_5ON6_365 | 1/AR/1013:1018, 1/AR/1034:1037 | Other IL Not in a motif group | homologous IL_5TBW_043 IL_71110.1 | |
| IL_5ON6_366 | 1/AR/1069:1071, 1/AR/1087:1089 | No text annotation Not in a motif group | homologous IL_5TBW_044 IL_95997.1 | |
| IL_5ON6_367 | 1/AR/1074:1076, 1/AR/1083:1084 | Single bulged A Not in a motif group | homologous IL_5TBW_045 IL_37497.2 | |
| IL_5ON6_368 | 1/AR/1120:1122, 1/AR/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_5ON6_369 | 1/AR/1123:1125, 1/AR/1133:1135 | No text annotation Not in a motif group | homologous IL_8C3A_050 IL_52767.2 | |
| IL_5ON6_370 | 1/AR/1167:1171, 1/AR/1328:1332 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.2 | |
| IL_5ON6_371 | 1/AR/1173:1180, 1/AR/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.7 | |
| IL_5ON6_372 | 1/AR/1180:1182, 1/AR/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.13 | |
| IL_5ON6_373 | 1/AR/1187:1194, 1/AR/1314:1319 | No text annotation Not in a motif group | homologous IL_8C3A_054 IL_27086.1 | |
| IL_5ON6_374 | 1/AR/1194:1205, 1/AR/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_5ON6_375 | 1/AR/1207:1209, 1/AR/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.13 | |
| IL_5ON6_376 | 1/AR/1218:1226, 1/AR/1283:1287 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.4 | |
| IL_5ON6_377 | 1/AR/1234:1238, 1/AR/1250:1254 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_5ON6_378 | 1/AR/1262:1266, 1/AR/1275:1277 | Major groove platform with extra cWW Not in a motif group | geometric IL_5D8H_003 IL_05564.2 | |
| IL_5ON6_379 | 1/AR/1376:1378, 1/AR/1428:1431 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_5ON6_380 | 1/AR/1385:1387, 1/AR/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_5ON6_381 | 1/AR/1388:1395, 1/AR/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_5ON6_382 | 1/AR/1398:1400, 1/AR/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_5ON6_383 | 1/AR/1444:1450, 1/AR/2354:2359 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_5ON6_384 | 1/AR/1500:1505, 1/AR/1513:1516 | No text annotation Not in a motif group | homologous IL_5TBW_062 IL_93630.2 | |
| IL_5ON6_385 | 1/AR/1532:1536, 1/AR/1585:1590 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_89002.2 | |
| IL_5ON6_386 | 1/AR/1618:1621, 1/AR/1824:1826 | Other IL Not in a motif group | homologous IL_5TBW_064 IL_84698.1 | |
| IL_5ON6_387 | 1/AR/1623:1625, 1/AR/1818:1822 | No text annotation Not in a motif group | ||
| IL_5ON6_388 | 1/AR/1627:1631, 1/AR/1811:1816 | No text annotation Not in a motif group | homologous IL_5TBW_066 IL_48431.1 | |
| IL_5ON6_389 | 1/AR/1645:1649, 1/AR/1806:1810 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.8 | |
| IL_5ON6_390 | 1/AR/1661:1663, 1/AR/1786:1788 | No text annotation Not in a motif group | homologous IL_5TBW_068 IL_95997.1 | |
| IL_5ON6_391 | 1/AR/1669:1670, 1/AR/1778:1780 | Single bulged C Not in a motif group | geometric IL_5TBW_069 IL_61258.12 | |
| IL_5ON6_392 | 1/AR/1670:1671, 1/AR/1776:1778 | Single stack bend Not in a motif group | homologous IL_5TBW_070 IL_76488.2 | |
| IL_5ON6_393 | 1/AR/1694:1698, 1/AR/1747:1752 | No text annotation Not in a motif group | homologous IL_5TBW_071 IL_69313.1 | |
| IL_5ON6_394 | 1/AR/1702:1707, 1/AR/1737:1743 | No text annotation Not in a motif group | homologous IL_5TBW_072 IL_39753.1 | |
| IL_5ON6_395 | 1/AR/1711:1717, 1/AR/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_5ON6_396 | 1/AR/1882:1889, 1/AR/2346:2350 | No text annotation Not in a motif group | ||
| IL_5ON6_397 | 1/AR/1895:1897, 1/AR/2338:2340 | Isolated tWW turn Not in a motif group | homologous IL_5TBW_075 IL_54997.7 | |
| IL_5ON6_398 | 1/AR/1898:1901, 1/AR/2336:2337 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_5ON6_399 | 1/AR/1901:1906, 1/AR/2333:2336 | Intercalated tWH Not in a motif group | homologous IL_5TBW_077 IL_82842.2 | |
| IL_5ON6_400 | 1/AR/1918:1923, 1/AR/1928:1934 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_5TBW_078 IL_65969.2 | |
| IL_5ON6_401 | 1/AR/1940:1942, 1/AR/2106:2108 | No text annotation Not in a motif group | homologous IL_5TBW_079 IL_95997.1 | |
| IL_5ON6_402 | 1/AR/1947:1948, 1/AR/2098:2101 | No text annotation Not in a motif group | homologous IL_5TBW_080 IL_74125.1 | |
| IL_5ON6_403 | 1/AR/1951:1953, 1/AR/2094:2095 | Single stack bend Not in a motif group | homologous IL_5TBW_081 IL_76488.2 | |
| IL_5ON6_404 | 1/AR/2128:2129, 1/AR/2323:2325 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_5ON6_405 | 1/AR/2156:2161, 1/AR/2173:2180 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_5ON6_406 | 1/AR/2196:2199, 1/AR/2245:2246 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_88739.1 | |
| IL_5ON6_407 | 1/AR/2200:2201, 1/AR/2241:2244 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_5ON6_408 | 1/AR/2204:2206, 1/AR/2237:2238 | Single bulged U Not in a motif group | homologous IL_5TBW_086 IL_83039.13 | |
| IL_5ON6_409 | 1/AR/2206:2210, 1/AR/2235:2237 | Major groove platform with extra pair Not in a motif group | geometric IL_5TBW_087 IL_63450.2 | |
| IL_5ON6_410 | 1/AR/2211:2217, 1/AR/2228:2234 | No text annotation Not in a motif group | homologous IL_5TBW_088 IL_36973.6 | |
| IL_5ON6_411 | 1/AR/2276:2277, 1/AR/2307:2310 | No text annotation Not in a motif group | homologous IL_8C3A_094 IL_59677.2 | |
| IL_5ON6_412 | 1/AR/2277:2288, 1/AR/2304:2307 | No text annotation Not in a motif group | geometric IL_5TBW_090 IL_81589.2 | |
| IL_5ON6_413 | 1/AR/2391:2394, 1/AR/2986:2988 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_5ON6_414 | 1/AR/2396:2398, 1/AR/2981:2984 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_54678.5 | |
| IL_5ON6_415 | 1/AR/2409:2411, 1/AR/2811:2812 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.13 | |
| IL_5ON6_416 | 1/AR/2412:2413, 1/AR/2807:2810 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_5ON6_417 | 1/AR/2423:2425, 1/AR/2604:2607 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.7 | |
| IL_5ON6_418 | 1/AR/2520:2526, 1/AR/2584:2587 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_5ON6_419 | 1/AR/2529:2563, 1/AR/2578:2581 | No text annotation Not in a motif group | geometric IL_5TBW_097 IL_46461.1 | |
| IL_5ON6_420 | 1/AR/2614:2615, 1/AR/2625:2627 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.2 | |
| IL_5ON6_421 | 1/AR/2666:2668, 1/AR/2686:2690 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.7 | |
| IL_5ON6_422 | 1/AR/2718:2721, 1/AR/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.2 | |
| IL_5ON6_423 | 1/AR/2770:2773, 1/AR/2787:2788 | Single stack bend with bulge Not in a motif group | homologous IL_5TBW_101 IL_76488.2 | |
| IL_5ON6_424 | 1/AR/2823:2824, 1/AR/2865:2867 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_27635.1 | |
| IL_5ON6_425 | 1/AR/2824:2826, 1/AR/2863:2865 | No text annotation Not in a motif group | homologous IL_5TBW_103 IL_95997.1 | |
| IL_5ON6_426 | 1/AR/2826:2828, 1/AR/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_5ON6_427 | 1/AR/2828:2830, 1/AR/2858:2862 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_92788.2 | |
| IL_5ON6_428 | 1/AR/2835:2839, 1/AR/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_5ON6_429 | 1/AR/2876:2877, 1/AR/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_5ON6_430 | 1/AR/2879:2881, 1/AR/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_5ON6_431 | 1/AR/2881:2882, 1/AR/2940:2943 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_109 IL_71530.2 | |
| IL_5ON6_432 | 1/AR/2889:2891, 1/AR/2912:2914 | No text annotation Not in a motif group | homologous IL_5TBW_110 IL_51629.2 | |
| IL_5ON6_433 | 1/AR/2891:2892, 1/AR/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_111 IL_95601.3 | |
| IL_5ON6_434 | 1/AR/2918:2920, 1/AR/2926:2928 | No text annotation Not in a motif group | homologous IL_5TBW_112 IL_95997.1 | |
| IL_5ON6_435 | 1/AR/2960:2961, 1/AR/2970:2972 | Single bulged A Not in a motif group | homologous IL_5TBW_113 IL_37497.2 | |
| IL_5ON6_436 | 1/AR/3004:3007, 1/AR/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_5ON6_437 | 1/AR/3012:3014, 1/AR/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_5ON6_438 | 1/AR/3018:3025, 1/AR/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_116 IL_04346.7 | |
| IL_5ON6_439 | 1/AR/3047:3051, 1/AR/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_5ON6_440 | 1/AR/3054:3059, 1/AR/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_5ON6_441 | 1/AR/3063:3064, 1/AR/3077:3080 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_5ON6_442 | 1/AR/3103:3107, 1/AR/3127:3131 | UAA/GAN Not in a motif group | homologous IL_5TBW_120 IL_89002.2 | |
| IL_5ON6_443 | 1/AR/3163:3166, 1/AR/3284:3287 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_30621.2 | |
| IL_5ON6_444 | 1/AR/3168:3170, 1/AR/3280:3282 | No text annotation Not in a motif group | homologous IL_5TBW_122 IL_95997.1 | |
| IL_5ON6_445 | 1/AR/3177:3179, 1/AR/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_5ON6_446 | 1/AR/3179:3188, 1/AR/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_5ON6_447 | 1/AR/3225:3229, 1/AR/3258:3260 | No text annotation Not in a motif group | homologous IL_5TBW_126 IL_19389.6 | |
| IL_5ON6_448 | 1/AR/3233:3235, 1/AR/3252:3254 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_5ON6_449 | 1/AR/3235:3238, 1/AR/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_128 IL_30621.2 | |
| IL_5ON6_450 | 1/AR/3300:3303, 1/AR/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.2 | |
| IL_5ON6_451 | 1/AR/3318:3320, 1/AR/3387:3388 | Single bulged U Not in a motif group | geometric IL_5TBW_130 IL_83039.13 | |
| IL_5ON6_452 | 1/AR/3324:3325, 1/AR/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_5ON6_453 | 1/AR/3328:3330, 1/AR/3373:3378 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.2 | |
| IL_5ON6_454 | 1/AR/3332:3337, 1/AR/3367:3371 | No text annotation Not in a motif group | homologous IL_5TBW_133 IL_83162.5 | |
| IL_5ON6_455 | 1/AR/3340:3342, 1/AR/3363:3364 | No text annotation Not in a motif group | homologous IL_8C3A_140 IL_83039.13 | |
| IL_5ON6_456 | 1/AR/3342:3345, 1/AR/3360:3363 | tWS-tSW Not in a motif group | geometric IL_5TBW_135 IL_09705.9 | |
| IL_5ON6_457 | 1/AR/3348:3350, 1/AR/3353:3357 | No text annotation Not in a motif group | geometric IL_7A0S_026 IL_51629.2 | |
| IL_5ON6_458 | 1/AS/15:16, 1/AS/63:65 | Single bulged A Not in a motif group | geometric IL_5TBW_372 IL_37497.2 | |
| IL_5ON6_459 | 1/AS/21:27, 1/AS/53:58 | No text annotation Not in a motif group | geometric IL_5TBW_373 IL_10207.2 | |
| IL_5ON6_460 | 1/AS/28:29, 1/AS/49:52 | Minor groove platform Not in a motif group | geometric IL_5TBW_374 IL_63797.2 | |
| IL_5ON6_461 | 1/AS/29:30, 1/AS/47:49 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_5ON6_462 | 1/AS/32:36, 1/AS/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.6 | |
| IL_5ON6_463 | 1/AS/72:80, 1/AS/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_377 IL_04346.7 | |
| IL_5ON6_464 | 1/AS/84:87, 1/AS/94:96 | No text annotation Not in a motif group | geometric IL_5TBW_378 IL_95997.1 | |
| IL_5ON6_465 | 1/AT/44:64, 1/AT/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_5ON6_466 | 1/AT/64:66, 1/AT/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_5ON6_467 | 1/AT/68:69, 1/AT/89:91 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 | |
| IL_5ON6_468 | 1/AT/69:73, 1/AT/78:89 | No text annotation Not in a motif group | geometric IL_5TBW_147 IL_39287.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5ON6_017 | No text annotation | ||
| IL_5ON6_026 | No text annotation | ||
| IL_5ON6_029 | Single bulged G | ||
| IL_5ON6_030 | Triple sheared | ||
| IL_5ON6_031 | Major groove platform with extra cWW | ||
| IL_5ON6_032 | Single bulged U | ||
| IL_5ON6_033 | Multiple bulged bases | ||
| IL_5ON6_038 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_5ON6_039 | Minor groove platform | ||
| IL_5ON6_040 | C-loop | ||
| IL_5ON6_041 | Tandem non-canonical cWW pairs | ||
| IL_5ON6_042 | No text annotation | ||
| IL_5ON6_043 | Other IL | ||
| IL_5ON6_044 | No text annotation | ||
| IL_5ON6_045 | Single bulged A | ||
| IL_5ON6_055 | No text annotation | ||
| IL_5ON6_056 | Major groove platform with extra cWW | ||
| IL_5ON6_062 | No text annotation | ||
| IL_5ON6_063 | UAA/GAN | ||
| IL_5ON6_064 | Other IL | ||
| IL_5ON6_065 | No text annotation | ||
| IL_5ON6_066 | No text annotation | ||
| IL_5ON6_067 | Triple sheared | ||
| IL_5ON6_068 | No text annotation | ||
| IL_5ON6_069 | Single bulged C | ||
| IL_5ON6_070 | Single stack bend | ||
| IL_5ON6_071 | No text annotation | ||
| IL_5ON6_072 | No text annotation | ||
| IL_5ON6_073 | Kink-turn | ||
| IL_5ON6_074 | No text annotation | ||
| IL_5ON6_075 | Isolated tWW turn | ||
| IL_5ON6_076 | Major groove platform; stack outside cWW | ||
| IL_5ON6_077 | Intercalated tWH | ||
| IL_5ON6_078 | tSH-tSH-tHH-tHS | ||
| IL_5ON6_079 | No text annotation | ||
| IL_5ON6_080 | No text annotation | ||
| IL_5ON6_081 | Single stack bend | ||
| IL_5ON6_082 | Single bulged A | ||
| IL_5ON6_083 | Kink-turn related | ||
| IL_5ON6_084 | Major groove outside cWW, minor groove, intercalation pocket | ||
| IL_5ON6_085 | Major groove outside cWW, minor groove, intercalation pocket | ||
| IL_5ON6_086 | Single bulged U | ||
| IL_5ON6_087 | Major groove platform with extra pair | ||
| IL_5ON6_088 | No text annotation | ||
| IL_5ON6_089 | Multiple bulged bases | ||
| IL_5ON6_090 | No text annotation | ||
| IL_5ON6_092 | Minor groove platform with intercalation | ||
| IL_5ON6_093 | Single bulged U | ||
| IL_5ON6_094 | Minor groove platform | ||
| IL_5ON6_095 | Isolated tHS basepair with bulges | ||
| IL_5ON6_096 | No text annotation | ||
| IL_5ON6_097 | Single bulged A | ||
| IL_5ON6_098 | Isolated tHS basepair with bulges | ||
| IL_5ON6_099 | Tandem non-canonical cWW pairs | ||
| IL_5ON6_100 | Single stack bend with bulge | ||
| IL_5ON6_101 | Major groove platform | ||
| IL_5ON6_112 | Single bulged A | ||
| IL_5ON6_120 | No text annotation | ||
| IL_5ON6_121 | No text annotation | ||
| IL_5ON6_181 | No text annotation | ||
| IL_5ON6_182 | No text annotation | ||
| IL_5ON6_183 | Tandem non-canonical cWW pairs | ||
| IL_5ON6_234 | No text annotation | ||
| IL_5ON6_238 | No text annotation | ||
| IL_5ON6_245 | tWH-tWH-tHW-tHW | ||
| IL_5ON6_254 | No text annotation | ||
| IL_5ON6_270 | Major groove minor groove platform with extra cWW | ||
| IL_5ON6_271 | No text annotation | ||
| IL_5ON6_272 | No text annotation | ||
| IL_5ON6_273 | No text annotation | ||
| IL_5ON6_274 | Major groove platform; stack outside cWW | ||
| IL_5ON6_279 | No text annotation | ||
| IL_5ON6_280 | Kink-turn | ||
| IL_5ON6_322 | No text annotation | ||
| IL_5ON6_339 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5ON6_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation Not in a motif group | ||
| J3_5ON6_002 | 1/1/369:376, 1/1/403:404, 1/4/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_5ON6_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_5ON6_006 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation Not in a motif group | homologous J3_5TBW_006 NA | |
| J3_5ON6_014 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_5ON6_015 | 1/1/3298:3303, 1/1/3311:3318, 1/1/3388:3390 | No text annotation Not in a motif group | ||
| J3_5ON6_016 | 1/3/9:14, 1/3/66:67, 1/3/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_5ON6_017 | 1/6/41:42, 1/6/433:439, 1/6/464:466 | No text annotation Not in a motif group | ||
| J3_5ON6_018 | 1/6/633:635, 1/6/861:865, 1/6/965:966 | No text annotation Not in a motif group | ||
| J3_5ON6_019 | 1/6/760:763, 1/6/773:775, 1/6/785:790 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_5ON6_020 | 1/6/881:884, 1/6/928:936, 1/6/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_5ON6_021 | 1/6/1037:1039, 1/6/1079:1083, 1/6/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_5ON6_022 | 1/6/1161:1164, 1/6/1581:1587, 1/6/1609:1616 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_5ON6_023 | 1/6/1168:1171, 1/6/1468:1470, 1/6/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_5ON6_024 | 1/6/1180:1187, 1/6/1198:1209, 1/6/1454:1458 | No text annotation Not in a motif group | ||
| J3_5ON6_025 | 1/6/1215:1220, 1/6/1263:1267, 1/6/1442:1448 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_5ON6_026 | 1/6/1283:1288, 1/6/1327:1332, 1/6/1419:1424 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_5ON6_027 | 1/6/1293:1294, 1/6/1303:1306, 1/6/1318:1322 | No text annotation Not in a motif group | ||
| J3_5ON6_028 | 1/6/1336:1338, 1/6/1386:1389, 1/6/1412:1415 | No text annotation Not in a motif group | homologous J3_4V88_040 NA | |
| J3_5ON6_029 | 1/6/1470:1474, 1/6/1533:1540, 1/6/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA | |
| J3_5ON6_030 | 1/A/41:42, 1/A/433:439, 1/A/464:466 | No text annotation Not in a motif group | ||
| J3_5ON6_031 | 1/A/633:635, 1/A/861:865, 1/A/965:966 | No text annotation Not in a motif group | ||
| J3_5ON6_033 | 1/A/881:884, 1/A/928:936, 1/A/943:947 | No text annotation Not in a motif group | ||
| J3_5ON6_034 | 1/A/1037:1039, 1/A/1079:1083, 1/A/1090:1094 | No text annotation Not in a motif group | homologous J3_8C3A_037 NA | |
| J3_5ON6_035 | 1/A/1161:1164, 1/A/1581:1587, 1/A/1609:1616 | No text annotation Not in a motif group | homologous J3_8C3A_038 NA | |
| J3_5ON6_036 | 1/A/1168:1171, 1/A/1468:1470, 1/A/1574:1577 | No text annotation Not in a motif group | ||
| J3_5ON6_037 | 1/A/1180:1187, 1/A/1198:1209, 1/A/1454:1458 | No text annotation Not in a motif group | ||
| J3_5ON6_038 | 1/A/1215:1220, 1/A/1263:1267, 1/A/1442:1448 | No text annotation Not in a motif group | homologous J3_8C3A_041 NA | |
| J3_5ON6_039 | 1/A/1283:1288, 1/A/1327:1332, 1/A/1419:1424 | No text annotation Not in a motif group | ||
| J3_5ON6_040 | 1/A/1293:1294, 1/A/1303:1306, 1/A/1318:1322 | No text annotation Not in a motif group | ||
| J3_5ON6_041 | 1/A/1336:1338, 1/A/1386:1389, 1/A/1412:1415 | No text annotation Not in a motif group | homologous J3_8C3A_043 NA | |
| J3_5ON6_042 | 1/A/1470:1474, 1/A/1533:1540, 1/A/1571:1574 | No text annotation Not in a motif group | homologous J3_8C3A_044 NA | |
| J3_5ON6_043 | 1/AR/113:123, 1/AR/149:158, 1/AR/263:267 | No text annotation Not in a motif group | ||
| J3_5ON6_044 | 1/AR/369:376, 1/AR/403:404, 1/AT/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_5ON6_045 | 1/AR/502:503, 1/AR/588:597, 1/AR/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_5ON6_046 | 1/AR/814:820, 1/AR/905:907, 1/AR/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_5ON6_047 | 1/AR/828:831, 1/AR/863:867, 1/AR/892:897 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_5ON6_048 | 1/AR/986:987, 1/AR/1062:1066, 1/AR/1092:1098 | No text annotation Not in a motif group | homologous J3_5TBW_006 NA | |
| J3_5ON6_049 | 1/AR/1230:1233, 1/AR/1255:1262, 1/AR/1277:1279 | No text annotation Not in a motif group | ||
| J3_5ON6_050 | 1/AR/1479:1485, 1/AR/1857:1859, 1/AR/1871:1874 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_5ON6_051 | 1/AR/1488:1491, 1/AR/1837:1843, 1/AR/1852:1854 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_5ON6_052 | 1/AR/1526:1531, 1/AR/1591:1595, 1/AR/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_5ON6_053 | 1/AR/1631:1633, 1/AR/1640:1645, 1/AR/1810:1811 | No text annotation Not in a motif group | homologous J3_5TBW_011 NA | |
| J3_5ON6_054 | 1/AR/2432:2435, 1/AR/2512:2517, 1/AR/2590:2597 | No text annotation Not in a motif group | homologous J3_5TBW_012 NA | |
| J3_5ON6_055 | 1/AR/2664:2666, 1/AR/2690:2692, 1/AR/2701:2706 | No text annotation Not in a motif group | homologous J3_8C3A_010 NA | |
| J3_5ON6_056 | 1/AR/2886:2889, 1/AR/2914:2916, 1/AR/2930:2936 | No text annotation Not in a motif group | ||
| J3_5ON6_057 | 1/AR/3298:3300, 1/AR/3314:3318, 1/AR/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_5ON6_058 | 1/AS/9:14, 1/AS/66:67, 1/AS/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5ON6_004 | No text annotation | ||
| J3_5ON6_005 | No text annotation | ||
| J3_5ON6_007 | No text annotation | ||
| J3_5ON6_008 | No text annotation | ||
| J3_5ON6_009 | No text annotation | ||
| J3_5ON6_010 | No text annotation | ||
| J3_5ON6_011 | No text annotation | ||
| J3_5ON6_012 | No text annotation | ||
| J3_5ON6_013 | No text annotation | ||
| J3_5ON6_032 | No text annotation |
Coloring options: