Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7NWI_0011/2/12:23No text annotation
Not in a motif group
HL_7NWI_0021/2/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_4TUE_034
HL_53597.2
HL_7NWI_0031/2/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4YYE_003
HL_22280.1
HL_7NWI_0041/5/37:44No text annotation
Not in a motif group
geometric
HL_5TBW_001
HL_06192.2
HL_7NWI_0051/5/68:73No text annotation
Not in a motif group
homologous
HL_8C3A_002
HL_02862.2
HL_7NWI_0061/5/89:95No text annotation
Not in a motif group
homologous
HL_5TBW_003
HL_67216.7
HL_7NWI_0071/5/131:137No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_7NWI_0081/5/204:211T-loop with 1 bulged base
Not in a motif group
homologous
HL_5TBW_005
HL_89380.2
HL_7NWI_0091/5/222:226No text annotation
Not in a motif group
homologous
HL_5TBW_006
HL_98984.2
HL_7NWI_0101/5/230:238No text annotation
Not in a motif group
homologous
HL_5TBW_007
HL_08002.9
HL_7NWI_0111/5/289:298No text annotation
Not in a motif group
homologous
HL_5TBW_008
HL_71554.2
HL_7NWI_0121/5/314:323No text annotation
Not in a motif group
homologous
HL_8C3A_009
HL_12078.2
HL_7NWI_0131/5/368:373Other HL
Not in a motif group
homologous
HL_5TBW_010
HL_42097.2
HL_7NWI_0141/5/393:398GNRA
Not in a motif group
homologous
HL_5TBW_011
HL_42097.2
HL_7NWI_0151/5/1178:1183No text annotation
Not in a motif group
geometric
HL_6WPI_001
HL_42097.2
HL_7NWI_0161/5/1252:1258No text annotation
Not in a motif group
geometric
HL_5J7L_026
HL_90617.2
HL_7NWI_0171/5/1317:1326No text annotation
Not in a motif group
homologous
HL_8C3A_014
HL_89380.2
HL_7NWI_0181/5/1364:1373No text annotation
Not in a motif group
HL_7NWI_0191/5/1389:1394No text annotation
Not in a motif group
homologous
HL_8C3A_016
HL_42097.2
HL_7NWI_0201/5/1406:1411No text annotation
Not in a motif group
HL_7NWI_0211/5/1436:1448No text annotation
Not in a motif group
HL_7NWI_0221/5/1477:1487No text annotation
Not in a motif group
HL_7NWI_0231/5/1561:1566GNRA
Not in a motif group
homologous
HL_5TBW_019
HL_42097.2
HL_7NWI_0241/5/1593:1602No text annotation
Not in a motif group
homologous
HL_5TBW_020
HL_39334.6
HL_7NWI_0251/5/1627:1635No text annotation
Not in a motif group
homologous
HL_8C3A_021
HL_33817.1
HL_7NWI_0261/5/1675:1680No text annotation
Not in a motif group
homologous
HL_8C3A_022
HL_96598.1
HL_7NWI_0271/5/1763:1769GNRA
Not in a motif group
homologous
HL_5TBW_023
HL_42097.2
HL_7NWI_0281/5/1814:1823No text annotation
Not in a motif group
HL_7NWI_0291/5/1864:1870No text annotation
Not in a motif group
homologous
HL_8C3A_025
HL_42097.2
HL_7NWI_0301/5/1886:1893No text annotation
Not in a motif group
homologous
HL_5TBW_026
HL_64430.2
HL_7NWI_0311/5/1978:1988No text annotation
Not in a motif group
geometric
HL_4KR9_003
HL_08127.1
HL_7NWI_0321/5/2001:2016No text annotation
Not in a motif group
HL_7NWI_0341/5/2317:2322No text annotation
Not in a motif group
homologous
HL_8C3A_030
HL_42097.2
HL_7NWI_0351/5/2376:2384No text annotation
Not in a motif group
homologous
HL_8C3A_031
HL_89380.2
HL_7NWI_0361/5/2420:2426No text annotation
Not in a motif group
homologous
HL_5TBW_032
HL_46680.1
HL_7NWI_0371/5/2458:2463No text annotation
Not in a motif group
homologous
HL_8C3A_033
HL_76539.2
HL_7NWI_0381/5/2486:2492No text annotation
Not in a motif group
HL_7NWI_0391/5/2523:2532No text annotation
Not in a motif group
homologous
HL_5TBW_035
HL_69023.2
HL_7NWI_0401/5/2561:2566No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_7NWI_0411/5/2578:2583No text annotation
Not in a motif group
homologous
HL_8C3A_036
HL_42097.2
HL_7NWI_0421/5/2624:2632No text annotation
Not in a motif group
homologous
HL_8C3A_037
HL_60812.1
HL_7NWI_0431/5/2664:2670No text annotation
Not in a motif group
homologous
HL_8C3A_038
HL_86373.2
HL_7NWI_0441/5/2705:2710No text annotation
Not in a motif group
geometric
HL_2Y9H_003
HL_16173.1
HL_7NWI_0451/5/2738:2742No text annotation
Not in a motif group
homologous
HL_8C3A_040
HL_49678.1
HL_7NWI_0461/5/2792:2799No text annotation
Not in a motif group
homologous
HL_5TBW_041
HL_64430.2
HL_7NWI_0471/5/2810:2816GNRA with one bulged base
Not in a motif group
homologous
HL_5TBW_042
HL_42097.2
HL_7NWI_0481/5/2872:2877No text annotation
Not in a motif group
homologous
HL_8C3A_043
HL_03562.2
HL_7NWI_0491/5/3614:3618No text annotation
Not in a motif group
homologous
HL_8C3A_045
HL_28980.1
HL_7NWI_0501/5/3639:3649No text annotation
Not in a motif group
homologous
HL_5TBW_046
HL_43613.5
HL_7NWI_0511/5/3668:3674No text annotation
Not in a motif group
homologous
HL_8C3A_047
HL_42097.2
HL_7NWI_0521/5/3724:3729Other HL
Not in a motif group
homologous
HL_5TBW_048
HL_42097.2
HL_7NWI_0531/5/3757:3767No text annotation
Not in a motif group
homologous
HL_5TBW_049
HL_71924.2
HL_7NWI_0541/5/3795:3805No text annotation
Not in a motif group
HL_7NWI_0551/5/3873:3882No text annotation
Not in a motif group
homologous
HL_8C3A_051
HL_90642.6
HL_7NWI_0571/5/4102:4108No text annotation
Not in a motif group
HL_7NWI_0581/5/4139:4145No text annotation
Not in a motif group
geometric
HL_1WZ2_007
HL_10278.1
HL_7NWI_0591/5/4193:4201No text annotation
Not in a motif group
homologous
HL_5TBW_054
HL_53171.2
HL_7NWI_0601/5/4209:4223No text annotation
Not in a motif group
HL_7NWI_0611/5/4250:4258No text annotation
Not in a motif group
homologous
HL_8C3A_057
HL_76406.4
HL_7NWI_0621/5/4270:4277No text annotation
Not in a motif group
homologous
HL_8C3A_058
HL_12078.2
HL_7NWI_0631/5/4301:4309No text annotation
Not in a motif group
homologous
HL_8C3A_059
HL_92229.2
HL_7NWI_0641/5/4321:4326GNRA
Not in a motif group
homologous
HL_5TBW_059
HL_42097.2
HL_7NWI_0651/5/4352:4362No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_23083.1
HL_7NWI_0661/5/4417:4425No text annotation
Not in a motif group
homologous
HL_5TBW_061
HL_06192.2
HL_7NWI_0671/5/4474:4481No text annotation
Not in a motif group
homologous
HL_5TBW_062
HL_91104.1
HL_7NWI_0681/5/4497:4503No text annotation
Not in a motif group
homologous
HL_8C3A_064
HL_43656.2
HL_7NWI_0691/5/4540:4545GNRA
Not in a motif group
homologous
HL_5TBW_064
HL_42097.2
HL_7NWI_0701/5/4603:4608GNRA
Not in a motif group
homologous
HL_5TBW_065
HL_42097.2
HL_7NWI_0711/5/4646:4651Ribsomal LSU H95
Not in a motif group
homologous
HL_5TBW_066
HL_46680.1
HL_7NWI_0721/5/4688:4702No text annotation
Not in a motif group
homologous
HL_8C3A_068
HL_56677.7
HL_7NWI_0731/5/4907:4914No text annotation
Not in a motif group
HL_7NWI_0741/5/4975:4983No text annotation
Not in a motif group
geometric
HL_5J7L_201
HL_27930.1
HL_7NWI_0751/5/5021:5028No text annotation
Not in a motif group
HL_7NWI_0761/7/36:41No text annotation
Not in a motif group
geometric
HL_5TBW_185
HL_87939.1
HL_7NWI_0771/7/86:91GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_42097.2
HL_7NWI_0781/8/55:62No text annotation
Not in a motif group
geometric
HL_4P5J_004
HL_86769.3
HL_7NWI_0801/8/107:112No text annotation
Not in a motif group
homologous
HL_5TBW_075
HL_87939.1
HL_7NWI_0811/8/121:129No text annotation
Not in a motif group
HL_7NWI_0821/9/7:17No text annotation
Not in a motif group
homologous
HL_4V88_186
HL_89881.2
HL_7NWI_0831/9/69:80No text annotation
Not in a motif group
HL_7NWI_0841/9/156:162Other HL
Not in a motif group
homologous
HL_4V88_188
HL_76539.2
HL_7NWI_0851/9/196:203No text annotation
Not in a motif group
geometric
HL_5J7L_154
HL_84085.2
HL_7NWI_0861/9/288:295No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_7NWI_0871/9/322:329No text annotation
Not in a motif group
geometric
HL_5TBW_018
HL_34168.2
HL_7NWI_0881/9/377:387No text annotation
Not in a motif group
HL_7NWI_0891/9/415:422No text annotation
Not in a motif group
geometric
HL_7RQB_057
HL_09136.1
HL_7NWI_0901/9/441:452No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_7NWI_0911/9/462:467UNCG
Not in a motif group
homologous
HL_4V88_196
HL_03562.2
HL_7NWI_0921/9/498:504No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_09136.1
HL_7NWI_0931/9/539:544Other HL
Not in a motif group
geometric
HL_2CZJ_007
HL_53845.1
HL_7NWI_0941/9/569:581No text annotation
Not in a motif group
homologous
HL_4V88_199
HL_06285.2
HL_7NWI_0951/9/618:623Other HL
Not in a motif group
homologous
HL_4V88_200
HL_53845.1
HL_7NWI_0981/9/820:828No text annotation
Not in a motif group
homologous
HL_4V88_203
HL_46766.2
HL_7NWI_0991/9/833:841No text annotation
Not in a motif group
HL_7NWI_1001/9/882:904No text annotation
Not in a motif group
HL_7NWI_1011/9/957:966No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_12326.1
HL_7NWI_1021/9/994:999Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_7NWI_1031/9/1054:1064No text annotation
Not in a motif group
homologous
HL_4V88_208
HL_12326.1
HL_7NWI_1041/9/1111:1122No text annotation
Not in a motif group
HL_7NWI_1051/9/1141:1146Other HL
Not in a motif group
homologous
HL_4V88_210
HL_42097.2
HL_7NWI_1061/9/1178:1183GNRA
Not in a motif group
homologous
HL_4V88_211
HL_42097.2
HL_7NWI_1071/9/1245:1254No text annotation
Not in a motif group
homologous
HL_4V88_212
HL_73530.2
HL_7NWI_1081/9/1295:1304No text annotation
Not in a motif group
homologous
HL_4V88_213
HL_53597.2
HL_7NWI_1091/9/1353:1358GNRA
Not in a motif group
homologous
HL_4V88_214
HL_42097.2
HL_7NWI_1101/9/1366:1373No text annotation
Not in a motif group
homologous
HL_4V88_215
HL_71554.2
HL_7NWI_1111/9/1421:1426GNRA
Not in a motif group
geometric
HL_5FQ5_003
HL_42097.2
HL_7NWI_1121/9/1460:1466No text annotation
Not in a motif group
homologous
HL_4V88_217
HL_42097.2
HL_7NWI_1131/9/1565:1570No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_7NWI_1141/9/1613:1626No text annotation
Not in a motif group
HL_7NWI_1151/9/1658:1666No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_60812.1
HL_7NWI_1171/9/1847:1852Other HL
Not in a motif group
homologous
HL_4V88_222
HL_16173.1

Problematic loops

#loop idProblemSequence
HL_7NWI_033No text annotation
HL_7NWI_056No text annotation
HL_7NWI_079No text annotation
HL_7NWI_096No text annotation
HL_7NWI_097No text annotation
HL_7NWI_116No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7NWI_0011/2/1:4,
1/2/69:72
No text annotation
Not in a motif group
homologous
IL_4WSM_371
NA
IL_7NWI_0021/5/3:7,
1/8/149:154
No text annotation
Not in a motif group
IL_7NWI_0031/5/12:14,
1/8/143:144
No text annotation
Not in a motif group
homologous
IL_8C3A_003
IL_83039.14
IL_7NWI_0041/5/16:18,
1/8/139:141
Isolated cWH basepair
Not in a motif group
geometric
IL_4J50_001
IL_51629.2
IL_7NWI_0051/5/26:27,
1/5/55:57
No text annotation
Not in a motif group
homologous
IL_8C3A_004
IL_76488.2
IL_7NWI_0061/5/30:37,
1/5/44:52
9x8 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4WF9_008
IL_35728.2
IL_7NWI_0071/5/81:88,
1/5/96:102
No text annotation
Not in a motif group
homologous
IL_5TBW_006
IL_88613.1
IL_7NWI_0081/5/118:121,
1/5/152:153
Stack outside cWW
Not in a motif group
geometric
IL_5J7L_268
IL_37629.1
IL_7NWI_0091/5/121:122,
1/5/147:152
No text annotation
Not in a motif group
geometric
IL_5TBW_007
IL_19724.2
IL_7NWI_0101/5/125:126,
1/5/142:144
Single bulged C
Not in a motif group
geometric
IL_1S03_006
IL_61258.12
IL_7NWI_0111/5/168:173,
1/5/263:267
No text annotation
Not in a motif group
IL_7NWI_0121/5/179:181,
1/5/256:257
Single stack bend
Not in a motif group
geometric
IL_7KGA_003
IL_76488.2
IL_7NWI_0131/5/184:189,
1/5/252:253
Multiple bulged bases
Not in a motif group
geometric
IL_1KXK_003
IL_71530.2
IL_7NWI_0141/5/195:196,
1/5/244:246
Single bulged C
Not in a motif group
geometric
IL_1DQF_001
IL_61258.12
IL_7NWI_0151/5/199:201,
1/5/214:215
No text annotation
Not in a motif group
homologous
IL_8C3A_013
IL_83039.14
IL_7NWI_0161/5/339:342,
1/8/32:33
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
geometric
IL_1U9S_005
IL_88739.1
IL_7NWI_0171/5/348:350,
1/8/25:26
No text annotation
Not in a motif group
homologous
IL_8C3A_014
IL_37497.3
IL_7NWI_0181/5/387:390,
1/5/401:414
No text annotation
Not in a motif group
homologous
IL_5TBW_014
IL_60992.6
IL_7NWI_0191/5/415:421,
1/8/13:19
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5TBW_015
IL_66414.6
IL_7NWI_0201/5/443:446,
1/5/1300:1304
No text annotation
Not in a motif group
geometric
IL_6AZ4_001
IL_69145.1
IL_7NWI_0211/5/459:460,
1/5/695:697
Single bulged C
Not in a motif group
geometric
IL_5TBW_002
IL_61258.12
IL_7NWI_0221/5/462:464,
1/5/691:693
No text annotation
Not in a motif group
geometric
IL_5TBW_127
IL_95997.1
IL_7NWI_0231/5/465:466,
1/5/688:690
No text annotation
Not in a motif group
IL_7NWI_0241/5/466:472,
1/5/682:688
No text annotation
Not in a motif group
IL_7NWI_0251/5/482:486,
1/5/670:672
No text annotation
Not in a motif group
IL_7NWI_0261/5/488:490,
1/5/664:668
No text annotation
Not in a motif group
IL_7NWI_0271/5/490:495,
1/5/659:664
No text annotation
Not in a motif group
IL_7NWI_0281/5/495:496,
1/5/657:659
Single stack bend
Not in a motif group
geometric
IL_4V83_236
IL_76488.2
IL_7NWI_0291/5/497:499,
1/5/655:656
Stack outside cWW
Not in a motif group
geometric
IL_1NTA_001
IL_16396.2
IL_7NWI_0301/5/500:505,
1/5/653:654
Single stack bend
Not in a motif group
geometric
IL_4V83_236
IL_76488.2
IL_7NWI_0311/5/508:510,
1/5/649:650
Single bulged A
Not in a motif group
geometric
IL_4V88_409
IL_37497.3
IL_7NWI_0321/5/512:515,
1/5/646:647
Multiple bulged bases
Not in a motif group
geometric
IL_6IV9_001
IL_16396.2
IL_7NWI_0331/5/708:709,
1/5/1287:1289
No text annotation
Not in a motif group
IL_7NWI_0341/5/722:724,
1/5/942:946
No text annotation
Not in a motif group
IL_7NWI_0351/5/726:731,
1/5/938:940
No text annotation
Not in a motif group
IL_7NWI_0361/5/731:735,
1/5/928:938
No text annotation
Not in a motif group
IL_7NWI_0371/5/737:739,
1/5/925:926
No text annotation
Not in a motif group
IL_7NWI_0381/5/740:742,
1/5/922:924
UC cWW
Not in a motif group
geometric
IL_4V88_385
IL_51629.2
IL_7NWI_0391/5/744:751,
1/5/911:920
No text annotation
Not in a motif group
IL_7NWI_0401/5/751:753,
1/5/910:911
Single stack bend
Not in a motif group
geometric
IL_7RQB_058
IL_76488.2
IL_7NWI_0411/5/989:992,
1/5/1051:1064
No text annotation
Not in a motif group
IL_7NWI_0421/5/1074:1077,
1/5/1234:1236
No text annotation
Not in a motif group
geometric
IL_6DME_003
IL_63450.2
IL_7NWI_0431/5/1077:1080,
1/5/1220:1234
No text annotation
Not in a motif group
IL_7NWI_0441/5/1081:1082,
1/5/1217:1219
No text annotation
Not in a motif group
IL_7NWI_0451/5/1082:1085,
1/5/1212:1217
No text annotation
Not in a motif group
IL_7NWI_0461/5/1086:1087,
1/5/1209:1211
No text annotation
Not in a motif group
IL_7NWI_0471/5/1097:1098,
1/5/1197:1199
Single stack bend
Not in a motif group
geometric
IL_7A0S_054
IL_76488.2
IL_7NWI_0481/5/1170:1175,
1/5/1186:1191
No text annotation
Not in a motif group
IL_7NWI_0491/5/1357:1360,
1/5/1378:1382
No text annotation
Not in a motif group
IL_7NWI_0501/5/1360:1361,
1/5/1376:1378
No text annotation
Not in a motif group
IL_7NWI_0511/5/1425:1429,
1/5/1455:1460
Triple sheared related
Not in a motif group
geometric
IL_4V9F_018
IL_64879.2
IL_7NWI_0521/5/1431:1434,
1/5/1450:1453
Double sheared
Not in a motif group
geometric
IL_4KZD_002
IL_09705.9
IL_7NWI_0531/5/1467:1468,
1/5/1496:1498
Single bulged A
Not in a motif group
homologous
IL_5TBW_024
IL_37497.3
IL_7NWI_0541/5/1472:1474,
1/5/1489:1492
Other IL
Not in a motif group
geometric
IL_5TBW_064
IL_84698.1
IL_7NWI_0551/5/1474:1476,
1/5/1488:1489
Single stack bend
Not in a motif group
geometric
IL_7A0S_005
IL_76488.2
IL_7NWI_0561/5/1520:1522,
1/5/1655:1657
No text annotation
Not in a motif group
geometric
IL_5TBW_027
IL_95997.1
IL_7NWI_0571/5/1522:1526,
1/5/1648:1655
No text annotation
Not in a motif group
homologous
IL_5TBW_028
IL_17470.6
IL_7NWI_0581/5/1550:1551,
1/5/1576:1578
Single bulged G
Not in a motif group
geometric
IL_4V9F_026
IL_00225.3
IL_7NWI_0591/5/1551:1555,
1/5/1572:1576
No text annotation
Not in a motif group
homologous
IL_8C3A_033
IL_56467.8
IL_7NWI_0601/5/1586:1589,
1/5/1605:1607
No text annotation
Not in a motif group
homologous
IL_8C3A_034
IL_05564.2
IL_7NWI_0611/5/1590:1592,
1/5/1603:1604
No text annotation
Not in a motif group
homologous
IL_8C3A_035
IL_83039.14
IL_7NWI_0621/5/1624:1626,
1/5/1636:1640
No text annotation
Not in a motif group
homologous
IL_8C3A_036
IL_90991.6
IL_7NWI_0631/5/1671:1673,
1/5/1682:1684
No text annotation
Not in a motif group
homologous
IL_5TBW_034
IL_95997.1
IL_7NWI_0641/5/1686:1688,
1/5/1848:1851
No text annotation
Not in a motif group
IL_7NWI_0661/5/1732:1737,
1/5/1792:1797
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7A0S_027
IL_81631.1
IL_7NWI_0671/5/1737:1738,
1/5/1790:1792
Minor groove platform
Not in a motif group
geometric
IL_6DLR_003
IL_42622.2
IL_7NWI_0681/5/1739:1744,
1/5/1786:1789
No text annotation
Not in a motif group
homologous
IL_8C3A_043
IL_02509.1
IL_7NWI_0691/5/1746:1749,
1/5/1781:1784
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_041
IL_30621.3
IL_7NWI_0701/5/1749:1751,
1/5/1779:1781
No text annotation
Not in a motif group
homologous
IL_8C3A_045
IL_95997.1
IL_7NWI_0711/5/1753:1756,
1/5/1776:1777
No text annotation
Not in a motif group
IL_7NWI_0721/5/1758:1761,
1/5/1772:1774
No text annotation
Not in a motif group
IL_7NWI_0731/5/1761:1763,
1/5/1769:1772
Other IL
Not in a motif group
geometric
IL_5TBW_064
IL_84698.1
IL_7NWI_0741/5/1858:1860,
1/5/1874:1876
No text annotation
Not in a motif group
homologous
IL_5TBW_046
IL_95997.1
IL_7NWI_0751/5/1905:1909,
1/5/2067:2071
No text annotation
Not in a motif group
homologous
IL_8C3A_051
IL_89002.2
IL_7NWI_0761/5/1911:1918,
1/5/2064:2065
No text annotation
Not in a motif group
homologous
IL_8C3A_052
IL_15861.7
IL_7NWI_0771/5/1918:1920,
1/5/2063:2064
No text annotation
Not in a motif group
IL_7NWI_0781/5/1920:1922,
1/5/2062:2063
No text annotation
Not in a motif group
IL_7NWI_0791/5/1926:1933,
1/5/2053:2058
No text annotation
Not in a motif group
geometric
IL_5TBW_051
IL_27086.1
IL_7NWI_0801/5/1933:1944,
1/5/2038:2053
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_53762.1
IL_7NWI_0811/5/1946:1948,
1/5/2035:2036
Single bulged U
Not in a motif group
homologous
IL_5TBW_053
IL_83039.14
IL_7NWI_0821/5/1957:1965,
1/5/2022:2026
No text annotation
Not in a motif group
homologous
IL_8C3A_057
IL_90538.4
IL_7NWI_0831/5/1966:1969,
1/5/2019:2021
No text annotation
Not in a motif group
IL_7NWI_0841/5/1973:1978,
1/5/1988:1993
No text annotation
Not in a motif group
IL_7NWI_0851/5/2083:2085,
1/5/2272:2273
No text annotation
Not in a motif group
IL_7NWI_0861/5/2290:2292,
1/5/2342:2345
No text annotation
Not in a motif group
homologous
IL_8C3A_061
IL_52767.2
IL_7NWI_0871/5/2299:2301,
1/5/2334:2335
No text annotation
Not in a motif group
homologous
IL_8C3A_062
IL_37497.3
IL_7NWI_0881/5/2302:2309,
1/5/2329:2333
Kink-turn
Not in a motif group
homologous
IL_5TBW_059
IL_70923.2
IL_7NWI_0891/5/2312:2314,
1/5/2325:2326
Single bulged A
Not in a motif group
homologous
IL_5TBW_060
IL_37497.3
IL_7NWI_0901/5/2358:2364,
1/5/3858:3863
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_061
IL_76042.2
IL_7NWI_0911/5/2415:2419,
1/5/2427:2429
C-loop
Not in a motif group
geometric
IL_7A0S_047
IL_37712.2
IL_7NWI_0921/5/2446:2450,
1/5/2509:2514
No text annotation
Not in a motif group
homologous
IL_8C3A_067
IL_89002.2
IL_7NWI_0931/5/2477:2479,
1/5/2499:2500
Single stack bend
Not in a motif group
geometric
IL_5J7L_249
IL_76488.2
IL_7NWI_0941/5/2542:2548,
1/5/2771:2774
No text annotation
Not in a motif group
IL_7NWI_0951/5/2549:2551,
1/5/2767:2770
No text annotation
Not in a motif group
IL_7NWI_0961/5/2589:2593,
1/5/2752:2756
No text annotation
Not in a motif group
IL_7NWI_0971/5/2613:2614,
1/5/2724:2726
Single bulged A
Not in a motif group
geometric
IL_3MJA_001
IL_37497.3
IL_7NWI_0981/5/2614:2615,
1/5/2722:2724
Single stack bend
Not in a motif group
homologous
IL_5TBW_070
IL_76488.2
IL_7NWI_0991/5/2646:2648,
1/5/2685:2688
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_4V9F_076
IL_38958.7
IL_7NWI_1001/5/2651:2653,
1/5/2681:2682
Single bulged G
Not in a motif group
geometric
IL_3NDB_004
IL_00225.3
IL_7NWI_1011/5/2656:2662,
1/5/2672:2678
Kink-turn
Not in a motif group
homologous
IL_5TBW_073
IL_60192.2
IL_7NWI_1021/5/2704:2705,
1/5/2710:2712
No text annotation
Not in a motif group
IL_7NWI_1031/5/2832:2838,
1/5/3850:3853
No text annotation
Not in a motif group
homologous
IL_8C3A_080
IL_49460.2
IL_7NWI_1041/5/2844:2846,
1/5/3842:3844
No text annotation
Not in a motif group
homologous
IL_8C3A_081
IL_54997.7
IL_7NWI_1051/5/2847:2850,
1/5/3840:3841
No text annotation
Not in a motif group
homologous
IL_8C3A_082
IL_50694.2
IL_7NWI_1061/5/2850:2855,
1/5/3837:3840
Intercalated tWH
Not in a motif group
geometric
IL_4V9F_062
IL_82842.2
IL_7NWI_1071/5/2867:2872,
1/5/2877:2883
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_4V9F_063
IL_65969.2
IL_7NWI_1081/5/2889:2891,
1/5/3610:3612
No text annotation
Not in a motif group
homologous
IL_8C3A_085
IL_95997.1
IL_7NWI_1091/5/2896:2897,
1/5/3602:3605
No text annotation
Not in a motif group
homologous
IL_8C3A_086
IL_74125.1
IL_7NWI_1101/5/2901:2906,
1/5/3588:3598
No text annotation
Not in a motif group
IL_7NWI_1111/5/3632:3633,
1/5/3827:3829
Single bulged A
Not in a motif group
homologous
IL_5TBW_082
IL_37497.3
IL_7NWI_1121/5/3660:3665,
1/5/3677:3684
Kink-turn related
Not in a motif group
homologous
IL_5TBW_083
IL_64509.1
IL_7NWI_1131/5/3700:3703,
1/5/3749:3750
No text annotation
Not in a motif group
homologous
IL_8C3A_089
IL_88739.1
IL_7NWI_1141/5/3704:3705,
1/5/3745:3748
No text annotation
Not in a motif group
homologous
IL_8C3A_090
IL_16396.2
IL_7NWI_1151/5/3708:3710,
1/5/3741:3742
Single stack bend
Not in a motif group
geometric
IL_4V9F_081
IL_76488.2
IL_7NWI_1161/5/3710:3714,
1/5/3739:3741
No text annotation
Not in a motif group
homologous
IL_8C3A_092
IL_65006.1
IL_7NWI_1171/5/3715:3721,
1/5/3732:3738
No text annotation
Not in a motif group
homologous
IL_8C3A_093
IL_36973.6
IL_7NWI_1181/5/3780:3781,
1/5/3811:3814
Multiple bulged bases
Not in a motif group
homologous
IL_5TBW_089
IL_59677.2
IL_7NWI_1191/5/3781:3792,
1/5/3808:3811
No text annotation
Not in a motif group
geometric
IL_5TBW_090
IL_81589.2
IL_7NWI_1201/5/3895:3898,
1/5/4563:4565
No text annotation
Not in a motif group
homologous
IL_8C3A_096
IL_63450.2
IL_7NWI_1211/5/3900:3902,
1/5/4558:4561
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5TBW_092
IL_54678.5
IL_7NWI_1221/5/3913:3915,
1/5/4388:4389
No text annotation
Not in a motif group
homologous
IL_8C3A_098
IL_83039.14
IL_7NWI_1231/5/3916:3917,
1/5/4384:4387
Minor groove platform
Not in a motif group
homologous
IL_5TBW_094
IL_42622.2
IL_7NWI_1241/5/3927:3929,
1/5/4181:4184
No text annotation
Not in a motif group
homologous
IL_8C3A_100
IL_38958.7
IL_7NWI_1251/5/4082:4088,
1/5/4161:4164
No text annotation
Not in a motif group
homologous
IL_5TBW_096
IL_74114.1
IL_7NWI_1261/5/4094:4097,
1/5/4112:4114
No text annotation
Not in a motif group
IL_7NWI_1271/5/4100:4102,
1/5/4108:4109
Single stack bend
Not in a motif group
geometric
IL_7KGA_003
IL_76488.2
IL_7NWI_1281/5/4191:4192,
1/5/4202:4204
Single bulged A
Not in a motif group
homologous
IL_5TBW_098
IL_37497.3
IL_7NWI_1291/5/4243:4245,
1/5/4263:4267
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_7RQB_082
IL_38958.7
IL_7NWI_1301/5/4291:4293,
1/5/4317:4318
Single bulged A
Not in a motif group
geometric
IL_5WWT_001
IL_37497.3
IL_7NWI_1311/5/4295:4298,
1/5/4312:4315
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5TBW_100
IL_30621.3
IL_7NWI_1321/5/4347:4350,
1/5/4364:4365
Single stack bend
Not in a motif group
geometric
IL_7RQB_058
IL_76488.2
IL_7NWI_1331/5/4400:4403,
1/5/4440:4444
No text annotation
Not in a motif group
homologous
IL_8C3A_111
IL_58686.2
IL_7NWI_1341/5/4403:4405,
1/5/4439:4440
Major groove platform
Not in a motif group
geometric
IL_5TBW_104
IL_76223.2
IL_7NWI_1351/5/4405:4408,
1/5/4434:4439
No text annotation
Not in a motif group
IL_7NWI_1361/5/4412:4416,
1/5/4426:4430
No text annotation
Not in a motif group
homologous
IL_8C3A_114
NA
IL_7NWI_1371/5/4453:4454,
1/5/4526:4528
Major groove platform
Not in a motif group
homologous
IL_5TBW_107
IL_76223.2
IL_7NWI_1381/5/4456:4458,
1/5/4520:4524
No text annotation
Not in a motif group
homologous
IL_8C3A_116
IL_90933.2
IL_7NWI_1391/5/4458:4459,
1/5/4517:4520
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_109
IL_71530.2
IL_7NWI_1401/5/4466:4468,
1/5/4489:4491
No text annotation
Not in a motif group
geometric
IL_4WF9_020
IL_95997.1
IL_7NWI_1411/5/4468:4470,
1/5/4485:4489
No text annotation
Not in a motif group
IL_7NWI_1421/5/4495:4497,
1/5/4503:4505
No text annotation
Not in a motif group
geometric
IL_5TBW_112
IL_95997.1
IL_7NWI_1431/5/4537:4538,
1/5/4547:4549
No text annotation
Not in a motif group
homologous
IL_8C3A_122
IL_37497.3
IL_7NWI_1441/5/4580:4582,
1/5/4721:4723
No text annotation
Not in a motif group
geometric
IL_3ICQ_003
IL_51629.2
IL_7NWI_1451/5/4582:4585,
1/5/4717:4721
No text annotation
Not in a motif group
homologous
IL_8C3A_123
IL_09705.9
IL_7NWI_1461/5/4590:4592,
1/5/4618:4620
No text annotation
Not in a motif group
homologous
IL_5TBW_115
IL_95997.1
IL_7NWI_1471/5/4596:4603,
1/5/4608:4614
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5TBW_116
IL_04346.7
IL_7NWI_1481/5/4624:4629,
1/5/4669:4673
No text annotation
Not in a motif group
IL_7NWI_1491/5/4632:4637,
1/5/4662:4666
UAA/GAN related
Not in a motif group
homologous
IL_5TBW_118
IL_17136.1
IL_7NWI_1501/5/4638:4640,
1/5/4659:4661
Isolated cWH basepair
Not in a motif group
geometric
IL_3W3S_003
IL_51629.2
IL_7NWI_1511/5/4641:4642,
1/5/4655:4658
Multiple bulged bases
Not in a motif group
homologous
IL_5TBW_119
IL_71530.2
IL_7NWI_1521/5/4680:4685,
1/5/4705:4710
UAA/GAN with extra cWW
Not in a motif group
geometric
IL_5J7L_350
IL_49767.5
IL_7NWI_1531/5/4739:4746,
1/5/4954:4960
No text annotation
Not in a motif group
IL_7NWI_1541/5/4755:4766,
1/5/4868:4878
No text annotation
Not in a motif group
IL_7NWI_1551/5/4768:4772,
1/5/4863:4866
Major groove platform with intercalation
Not in a motif group
geometric
IL_7A0S_102
IL_58502.1
IL_7NWI_1561/5/4885:4888,
1/5/4931:4934
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_402D_001
IL_30621.3
IL_7NWI_1571/5/4891:4896,
1/5/4924:4928
No text annotation
Not in a motif group
IL_7NWI_1581/5/4898:4901,
1/5/4920:4922
No text annotation
Not in a motif group
IL_7NWI_1591/5/4972:4975,
1/5/4983:4986
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_129
IL_30621.3
IL_7NWI_1601/5/4992:4994,
1/5/5057:5059
No text annotation
Not in a motif group
geometric
IL_3D0U_006
IL_95997.1
IL_7NWI_1611/5/4996:4997,
1/5/5053:5055
No text annotation
Not in a motif group
IL_7NWI_1621/5/5000:5002,
1/5/5045:5050
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5TBW_132
IL_90933.2
IL_7NWI_1631/5/5003:5009,
1/5/5039:5044
No text annotation
Not in a motif group
IL_7NWI_1641/5/5012:5014,
1/5/5035:5036
Single bulged C
Not in a motif group
geometric
IL_4WF9_035
IL_61258.12
IL_7NWI_1651/5/5014:5017,
1/5/5032:5035
No text annotation
Not in a motif group
homologous
IL_8C3A_141
IL_09705.9
IL_7NWI_1661/7/15:16,
1/7/62:64
Single bulged A
Not in a motif group
homologous
IL_5TBW_372
IL_37497.3
IL_7NWI_1671/7/21:27,
1/7/52:57
No text annotation
Not in a motif group
homologous
IL_5TBW_373
IL_10207.2
IL_7NWI_1681/7/28:29,
1/7/48:51
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_7RQB_113
IL_09061.6
IL_7NWI_1691/7/32:36,
1/7/41:45
Symmetric double minor groove platform
Not in a motif group
homologous
IL_7RQB_114
IL_58103.6
IL_7NWI_1701/7/71:78,
1/7/98:104
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_377
IL_04346.7
IL_7NWI_1711/7/79:81,
1/7/95:97
No text annotation
Not in a motif group
geometric
IL_4V88_470
IL_51629.2
IL_7NWI_1721/7/82:85,
1/7/92:94
No text annotation
Not in a motif group
homologous
IL_5TBW_378
IL_95997.1
IL_7NWI_1731/8/64:66,
1/8/92:95
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5TBW_145
IL_82068.2
IL_7NWI_1741/9/23:25,
1/9/649:651
No text annotation
Not in a motif group
geometric
IL_3MEI_002
IL_95997.1
IL_7NWI_1751/9/34:36,
1/9/519:521
UC cWW
Not in a motif group
homologous
IL_4V88_385
IL_51629.2
IL_7NWI_1761/9/37:40,
1/9/514:518
Double sheared
Not in a motif group
geometric
IL_4WF9_016
IL_09705.9
IL_7NWI_1771/9/41:47,
1/9/479:481
No text annotation
Not in a motif group
geometric
IL_4V88_387
IL_33912.1
IL_7NWI_1781/9/49:51,
1/9/476:477
Minor groove platform
Not in a motif group
homologous
IL_4V88_388
IL_93353.1
IL_7NWI_1791/9/57:62,
1/9/86:88
No text annotation
Not in a motif group
homologous
IL_4V88_389