4V6I Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V6I_001 | 1/CA/7:17 | No text annotation Not in a motif group | homologous HL_8C3A_192 HL_89881.2 | |
| HL_4V6I_002 | 1/CA/154:160 | No text annotation Not in a motif group | ||
| HL_4V6I_004 | 1/CA/226:232 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_4V6I_005 | 1/CA/275:281 | No text annotation Not in a motif group | ||
| HL_4V6I_006 | 1/CA/329:339 | No text annotation Not in a motif group | geometric HL_4WSM_226 HL_22031.1 | |
| HL_4V6I_007 | 1/CA/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_4V6I_008 | 1/CA/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_4V6I_009 | 1/CA/414:419 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_4V6I_010 | 1/CA/450:456 | No text annotation Not in a motif group | ||
| HL_4V6I_011 | 1/CA/491:496 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_4V6I_012 | 1/CA/568:575 | No text annotation Not in a motif group | ||
| HL_4V6I_013 | 1/CA/663:669 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_4V6I_014 | 1/CA/827:845 | No text annotation Not in a motif group | ||
| HL_4V6I_015 | 1/CA/899:910 | No text annotation Not in a motif group | ||
| HL_4V6I_016 | 1/CA/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_4V6I_017 | 1/CA/997:1007 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_4V6I_018 | 1/CA/1057:1062 | No text annotation Not in a motif group | ||
| HL_4V6I_019 | 1/CA/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_4V6I_020 | 1/CA/1121:1126 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_4V6I_022 | 1/CA/1233:1246 | No text annotation Not in a motif group | ||
| HL_4V6I_023 | 1/CA/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_4V6I_024 | 1/CA/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_4V6I_026 | 1/CA/1395:1403 | No text annotation Not in a motif group | ||
| HL_4V6I_027 | 1/CA/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_4V6I_028 | 1/CA/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_4V6I_029 | 1/CA/1592:1604 | No text annotation Not in a motif group | ||
| HL_4V6I_030 | 1/CA/1698:1703 | No text annotation Not in a motif group | geometric HL_5M3H_001 HL_27930.1 | |
| HL_4V6I_031 | 1/CA/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 | |
| HL_4V6I_032 | 1/CB/13:22 | No text annotation Not in a motif group | ||
| HL_4V6I_033 | 1/CB/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_6UFM_002 HL_53597.2 | |
| HL_4V6I_034 | 1/CB/52:60 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_6UFM_003 HL_22280.1 | |
| HL_4V6I_035 | 1/DA/38:45 | No text annotation Not in a motif group | homologous HL_8C3A_001 HL_06192.2 | |
| HL_4V6I_036 | 1/DA/69:74 | No text annotation Not in a motif group | ||
| HL_4V6I_037 | 1/DA/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_4V6I_038 | 1/DA/132:136 | No text annotation Not in a motif group | ||
| HL_4V6I_039 | 1/DA/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_4V6I_040 | 1/DA/216:224 | No text annotation Not in a motif group | ||
| HL_4V6I_041 | 1/DA/278:287 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_4V6I_042 | 1/DA/303:312 | No text annotation Not in a motif group | homologous HL_5TBW_009 HL_12078.2 | |
| HL_4V6I_043 | 1/DA/357:362 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_4V6I_044 | 1/DA/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.1 | |
| HL_4V6I_045 | 1/DA/463:468 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_4V6I_046 | 1/DA/543:548 | No text annotation Not in a motif group | ||
| HL_4V6I_047 | 1/DA/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_4V6I_048 | 1/DA/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_4V6I_049 | 1/DA/687:693 | No text annotation Not in a motif group | ||
| HL_4V6I_050 | 1/DA/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_4V6I_051 | 1/DA/732:737 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_4V6I_052 | 1/DA/763:768 | No text annotation Not in a motif group | ||
| HL_4V6I_053 | 1/DA/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.1 | |
| HL_4V6I_054 | 1/DA/876:885 | No text annotation Not in a motif group | homologous HL_8C3A_020 HL_39334.6 | |
| HL_4V6I_055 | 1/DA/910:918 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_24068.2 | |
| HL_4V6I_056 | 1/DA/957:964 | No text annotation Not in a motif group | geometric HL_361D_002 HL_90617.2 | |
| HL_4V6I_058 | 1/DA/1076:1083 | No text annotation Not in a motif group | ||
| HL_4V6I_059 | 1/DA/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_4V6I_060 | 1/DA/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_4V6I_061 | 1/DA/1239:1249 | No text annotation Not in a motif group | homologous HL_8C3A_027 HL_07145.1 | |
| HL_4V6I_062 | 1/DA/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_4V6I_064 | 1/DA/1403:1408 | GNRA Not in a motif group | geometric HL_3W3S_003 HL_42097.1 | |
| HL_4V6I_065 | 1/DA/1462:1470 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_89380.2 | |
| HL_4V6I_066 | 1/DA/1506:1512 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_4V6I_067 | 1/DA/1544:1549 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_76539.2 | |
| HL_4V6I_068 | 1/DA/1565:1574 | No text annotation Not in a motif group | ||
| HL_4V6I_069 | 1/DA/1599:1608 | No text annotation Not in a motif group | homologous HL_8C3A_035 HL_69023.2 | |
| HL_4V6I_071 | 1/DA/1679:1689 | No text annotation Not in a motif group | ||
| HL_4V6I_072 | 1/DA/1719:1725 | Other HL Not in a motif group | geometric HL_4V9F_039 HL_27930.1 | |
| HL_4V6I_073 | 1/DA/1760:1765 | Other HL Not in a motif group | geometric HL_4Y1M_004 HL_42097.1 | |
| HL_4V6I_074 | 1/DA/1792:1796 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.1 | |
| HL_4V6I_075 | 1/DA/1844:1851 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.2 | |
| HL_4V6I_076 | 1/DA/1862:1868 | No text annotation Not in a motif group | ||
| HL_4V6I_077 | 1/DA/1923:1928 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_4V6I_078 | 1/DA/2008:2013 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_4V6I_079 | 1/DA/2065:2071 | No text annotation Not in a motif group | geometric HL_3IGI_004 HL_30784.2 | |
| HL_4V6I_080 | 1/DA/2110:2114 | No text annotation Not in a motif group | geometric HL_4V9F_046 HL_76539.2 | |
| HL_4V6I_081 | 1/DA/2135:2145 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.5 | |
| HL_4V6I_083 | 1/DA/2220:2225 | No text annotation Not in a motif group | homologous HL_8C3A_048 HL_42097.1 | |
| HL_4V6I_084 | 1/DA/2253:2263 | No text annotation Not in a motif group | homologous HL_8C3A_049 HL_71924.2 | |
| HL_4V6I_085 | 1/DA/2292:2300 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.1 | |
| HL_4V6I_086 | 1/DA/2369:2378 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_4V6I_087 | 1/DA/2470:2475 | No text annotation Not in a motif group | ||
| HL_4V6I_088 | 1/DA/2536:2543 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_4V6I_089 | 1/DA/2568:2573 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_4V6I_090 | 1/DA/2616:2624 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_4V6I_091 | 1/DA/2633:2645 | No text annotation Not in a motif group | ||
| HL_4V6I_092 | 1/DA/2673:2681 | No text annotation Not in a motif group | ||
| HL_4V6I_093 | 1/DA/2693:2700 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.2 | |
| HL_4V6I_094 | 1/DA/2724:2732 | No text annotation Not in a motif group | ||
| HL_4V6I_095 | 1/DA/2744:2749 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.1 | |
| HL_4V6I_096 | 1/DA/2776:2784 | No text annotation Not in a motif group | homologous HL_5TBW_060 HL_96598.1 | |
| HL_4V6I_097 | 1/DA/2840:2848 | No text annotation Not in a motif group | homologous HL_8C3A_062 HL_06192.2 | |
| HL_4V6I_098 | 1/DA/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_4V6I_099 | 1/DA/2920:2926 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_43656.2 | |
| HL_4V6I_100 | 1/DA/2963:2968 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_42097.1 | |
| HL_4V6I_101 | 1/DA/3025:3030 | No text annotation Not in a motif group | homologous HL_8C3A_066 HL_42097.1 | |
| HL_4V6I_102 | 1/DA/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_4V6I_103 | 1/DA/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_4V6I_104 | 1/DA/3214:3219 | No text annotation Not in a motif group | ||
| HL_4V6I_105 | 1/DA/3240:3247 | No text annotation Not in a motif group | ||
| HL_4V6I_106 | 1/DA/3303:3311 | No text annotation Not in a motif group | homologous HL_8C3A_071 HL_27930.1 | |
| HL_4V6I_107 | 1/DA/3349:3356 | No text annotation Not in a motif group | geometric HL_4WF9_041 HL_49288.1 | |
| HL_4V6I_108 | 1/DB/47:56 | No text annotation Not in a motif group | geometric HL_4V9F_001 HL_99167.1 | |
| HL_4V6I_109 | 1/DB/109:113 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_4V6I_110 | 1/DB/123:130 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_24068.2 | |
| HL_4V6I_111 | 1/DC/36:41 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_4V6I_112 | 1/DC/85:90 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6I_003 | No text annotation | ||
| HL_4V6I_021 | No text annotation | ||
| HL_4V6I_025 | No text annotation | ||
| HL_4V6I_057 | No text annotation | ||
| HL_4V6I_063 | No text annotation | ||
| HL_4V6I_070 | No text annotation | ||
| HL_4V6I_082 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V6I_001 | 1/CA/24:27, 1/CA/599:601 | No text annotation Not in a motif group | geometric IL_4V83_235 IL_95997.1 | |
| IL_4V6I_002 | 1/CA/37:41, 1/CA/466:471 | No text annotation Not in a motif group | homologous IL_4V88_386 IL_41507.1 | |
| IL_4V6I_004 | 1/CA/50:52, 1/CA/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_4V6I_005 | 1/CA/58:62, 1/CA/88:89 | Multiple bulged bases Not in a motif group | geometric IL_4YAZ_007 IL_76389.1 | |
| IL_4V6I_006 | 1/CA/63:69, 1/CA/82:87 | No text annotation Not in a motif group | ||
| IL_4V6I_007 | 1/CA/109:113, 1/CA/301:305 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_4V6I_008 | 1/CA/113:116, 1/CA/300:301 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_4V6I_010 | 1/CA/149:152, 1/CA/162:165 | No text annotation Not in a motif group | ||
| IL_4V6I_011 | 1/CA/177:180, 1/CA/194:197 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_30621.2 | |
| IL_4V6I_012 | 1/CA/270:272, 1/CA/284:285 | Single stack bend Not in a motif group | geometric IL_7A0S_022 IL_92001.1 | |
| IL_4V6I_013 | 1/CA/311:317, 1/CA/347:355 | No text annotation Not in a motif group | ||
| IL_4V6I_015 | 1/CA/363:366, 1/CA/375:381 | No text annotation Not in a motif group | ||
| IL_4V6I_016 | 1/CA/389:391, 1/CA/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_4V6I_017 | 1/CA/411:413, 1/CA/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_4V6I_018 | 1/CA/439:441, 1/CA/463:464 | Single bulged U Not in a motif group | geometric IL_4LFB_014 IL_83039.13 | |
| IL_4V6I_019 | 1/CA/443:447, 1/CA/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_4V6I_020 | 1/CA/447:448, 1/CA/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_4V6I_021 | 1/CA/481:482, 1/CA/505:507 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_76488.2 | |
| IL_4V6I_023 | 1/CA/562:568, 1/CA/575:583 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_4V6I_024 | 1/CA/616:622, 1/CA/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_4V6I_025 | 1/CA/624:626, 1/CA/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_4V6I_026 | 1/CA/627:631, 1/CA/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_4V6I_027 | 1/CA/660:663, 1/CA/669:672 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_30621.2 | |
| IL_4V6I_028 | 1/CA/868:869, 1/CA/958:960 | Major groove platform Not in a motif group | geometric IL_7RQB_090 IL_27635.1 | |
| IL_4V6I_029 | 1/CA/871:874, 1/CA/953:956 | tSH-tHW Not in a motif group | geometric IL_5UNE_005 IL_21270.1 | |
| IL_4V6I_030 | 1/CA/874:878, 1/CA/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_4V6I_031 | 1/CA/885:888, 1/CA/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_4V6I_032 | 1/CA/892:899, 1/CA/910:920 | No text annotation Not in a motif group | ||
| IL_4V6I_033 | 1/CA/985:990, 1/CA/1014:1016 | Other IL Not in a motif group | homologous IL_4V88_435 IL_22046.1 | |
| IL_4V6I_034 | 1/CA/990:994, 1/CA/1010:1014 | tSH-tHW-tHS Not in a motif group | geometric IL_4LFB_033 IL_17136.1 | |
| IL_4V6I_035 | 1/CA/1041:1045, 1/CA/1073:1077 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_4V6I_036 | 1/CA/1051:1053, 1/CA/1066:1067 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_4V6I_037 | 1/CA/1053:1057, 1/CA/1062:1066 | No text annotation Not in a motif group | ||
| IL_4V6I_038 | 1/CA/1111:1118, 1/CA/1129:1134 | No text annotation Not in a motif group | ||
| IL_4V6I_039 | 1/CA/1146:1151, 1/CA/1627:1632 | No text annotation Not in a motif group | ||
| IL_4V6I_041 | 1/CA/1173:1175, 1/CA/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_4V6I_042 | 1/CA/1178:1179, 1/CA/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_4V6I_043 | 1/CA/1268:1270, 1/CA/1440:1441 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_4V6I_044 | 1/CA/1271:1275, 1/CA/1437:1439 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3KTW_002 IL_82068.2 | |
| IL_4V6I_046 | 1/CA/1280:1281, 1/CA/1426:1428 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_4V6I_047 | 1/CA/1290:1293, 1/CA/1322:1325 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_002 IL_30621.2 | |
| IL_4V6I_048 | 1/CA/1333:1334, 1/CA/1417:1419 | No text annotation Not in a motif group | ||
| IL_4V6I_049 | 1/CA/1335:1337, 1/CA/1415:1416 | Single stack bend Not in a motif group | geometric IL_5VSU_003 IL_76488.2 | |
| IL_4V6I_050 | 1/CA/1340:1342, 1/CA/1383:1384 | No text annotation Not in a motif group | ||
| IL_4V6I_051 | 1/CA/1345:1348, 1/CA/1377:1380 | No text annotation Not in a motif group | ||
| IL_4V6I_052 | 1/CA/1351:1355, 1/CA/1368:1374 | No text annotation Not in a motif group | ||
| IL_4V6I_053 | 1/CA/1540:1545, 1/CA/1566:1571 | No text annotation Not in a motif group | homologous IL_4V88_462 IL_19954.2 | |
| IL_4V6I_054 | 1/CA/1636:1641, 1/CA/1760:1767 | No text annotation Not in a motif group | ||
| IL_4V6I_055 | 1/CA/1642:1644, 1/CA/1757:1759 | No text annotation Not in a motif group | homologous IL_4V88_465 IL_95997.1 | |
| IL_4V6I_056 | 1/CA/1644:1647, 1/CA/1753:1757 | No text annotation Not in a motif group | ||
| IL_4V6I_057 | 1/CA/1649:1652, 1/CA/1748:1751 | No text annotation Not in a motif group | ||
| IL_4V6I_058 | 1/CA/1653:1656, 1/CA/1744:1747 | Double sheared Not in a motif group | homologous IL_4V88_468 IL_09705.9 | |
| IL_4V6I_059 | 1/CA/1656:1658, 1/CA/1743:1744 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_4V6I_060 | 1/CA/1664:1667, 1/CA/1734:1737 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_30621.2 | |
| IL_4V6I_061 | 1/CA/1669:1672, 1/CA/1729:1732 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_4V6I_062 | 1/CA/1672:1674, 1/CA/1727:1729 | No text annotation Not in a motif group | geometric IL_1YZ9_001 IL_95997.1 | |
| IL_4V6I_063 | 1/CA/1675:1678, 1/CA/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.2 | |
| IL_4V6I_064 | 1/CA/1678:1682, 1/CA/1719:1723 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_4V6I_065 | 1/CA/1688:1690, 1/CA/1711:1713 | Other IL Not in a motif group | homologous IL_4V88_476 IL_10023.1 | |
| IL_4V6I_066 | 1/CA/1693:1695, 1/CA/1706:1708 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_4V6I_067 | 1/DA/7:8, 1/DB/150:152 | Single stack bend Not in a motif group | geometric IL_7KGA_006 IL_76488.2 | |
| IL_4V6I_068 | 1/DA/13:15, 1/DB/144:145 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_4V6I_069 | 1/DA/27:28, 1/DA/56:58 | Single stack bend Not in a motif group | geometric IL_4V9F_005 IL_76488.2 | |
| IL_4V6I_071 | 1/DA/32:38, 1/DA/45:52 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4V9F_006 IL_04346.7 | |
| IL_4V6I_072 | 1/DA/82:89, 1/DA/97:103 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_4V6I_073 | 1/DA/125:127, 1/DA/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_4V6I_074 | 1/DA/159:160, 1/DA/260:262 | No text annotation Not in a motif group | ||
| IL_4V6I_075 | 1/DA/161:164, 1/DA/257:259 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_4V6I_076 | 1/DA/169:170, 1/DA/248:253 | No text annotation Not in a motif group | ||
| IL_4V6I_077 | 1/DA/176:179, 1/DA/237:242 | No text annotation Not in a motif group | ||
| IL_4V6I_078 | 1/DA/185:186, 1/DA/229:231 | No text annotation Not in a motif group | ||
| IL_4V6I_079 | 1/DA/189:191, 1/DA/204:205 | Single bulged U Not in a motif group | geometric IL_4V9F_013 IL_83039.13 | |
| IL_4V6I_080 | 1/DA/328:332, 1/DB/31:33 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_4V6I_081 | 1/DA/336:339, 1/DB/25:27 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_4V6I_082 | 1/DA/376:379, 1/DA/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_4V6I_083 | 1/DA/404:410, 1/DB/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_4V6I_084 | 1/DA/429:431, 1/DA/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_4V6I_086 | 1/DA/460:462, 1/DA/469:470 | Single stack bend Not in a motif group | geometric IL_4WF9_007 IL_76488.2 | |
| IL_4V6I_087 | 1/DA/511:512, 1/DA/578:580 | No text annotation Not in a motif group | ||
| IL_4V6I_088 | 1/DA/517:525, 1/DA/567:573 | No text annotation Not in a motif group | ||
| IL_4V6I_089 | 1/DA/531:534, 1/DA/559:561 | No text annotation Not in a motif group | ||
| IL_4V6I_090 | 1/DA/537:538, 1/DA/553:556 | No text annotation Not in a motif group | ||
| IL_4V6I_091 | 1/DA/594:597, 1/DA/606:608 | No text annotation Not in a motif group | ||
| IL_4V6I_092 | 1/DA/668:670, 1/DA/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_4V6I_093 | 1/DA/679:683, 1/DA/697:701 | No text annotation Not in a motif group | ||
| IL_4V6I_094 | 1/DA/725:726, 1/DA/743:745 | Single stack bend Not in a motif group | geometric IL_7KGA_006 IL_76488.2 | |
| IL_4V6I_095 | 1/DA/726:728, 1/DA/741:743 | No text annotation Not in a motif group | geometric IL_5UNE_006 IL_95997.1 | |
| IL_4V6I_096 | 1/DA/755:757, 1/DA/774:777 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_4V6I_097 | 1/DA/758:763, 1/DA/768:773 | No text annotation Not in a motif group | geometric IL_5TBW_026 IL_19954.2 | |
| IL_4V6I_098 | 1/DA/803:805, 1/DA/938:940 | CC cWW Not in a motif group | geometric IL_4E59_001 IL_95997.1 | |
| IL_4V6I_099 | 1/DA/805:809, 1/DA/931:938 | No text annotation Not in a motif group | homologous IL_5TBW_028 IL_17470.6 | |
| IL_4V6I_100 | 1/DA/833:834, 1/DA/859:861 | Single bulged G Not in a motif group | geometric IL_5J7L_262 IL_00225.2 | |
| IL_4V6I_101 | 1/DA/834:839, 1/DA/854:859 | No text annotation Not in a motif group | ||
| IL_4V6I_102 | 1/DA/869:872, 1/DA/888:890 | No text annotation Not in a motif group | ||
| IL_4V6I_103 | 1/DA/873:875, 1/DA/886:887 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_4V6I_104 | 1/DA/907:909, 1/DA/919:923 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_4V6I_105 | 1/DA/954:956, 1/DA/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_4V6I_106 | 1/DA/969:970, 1/DA/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_4V6I_108 | 1/DA/982:984, 1/DA/1100:1104 | No text annotation Not in a motif group | ||
| IL_4V6I_109 | 1/DA/988:990, 1/DA/1061:1063 | Stack and bulge Not in a motif group | geometric IL_2ET8_001 IL_82842.2 | |
| IL_4V6I_110 | 1/DA/991:998, 1/DA/1052:1060 | No text annotation Not in a motif group | ||
| IL_4V6I_111 | 1/DA/999:1001, 1/DA/1050:1051 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_4V6I_112 | 1/DA/1001:1010, 1/DA/1042:1050 | No text annotation Not in a motif group | ||
| IL_4V6I_113 | 1/DA/1010:1013, 1/DA/1039:1042 | Double sheared Not in a motif group | geometric IL_4ZNP_002 IL_09705.9 | |
| IL_4V6I_114 | 1/DA/1013:1020, 1/DA/1034:1039 | No text annotation Not in a motif group | ||
| IL_4V6I_115 | 1/DA/1067:1071, 1/DA/1089:1093 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_4V6I_116 | 1/DA/1072:1076, 1/DA/1083:1088 | No text annotation Not in a motif group | ||
| IL_4V6I_117 | 1/DA/1120:1122, 1/DA/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_4V6I_118 | 1/DA/1167:1171, 1/DA/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_4V6I_119 | 1/DA/1173:1180, 1/DA/1325:1326 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V9F_038 IL_15861.7 | |
| IL_4V6I_120 | 1/DA/1180:1182, 1/DA/1324:1325 | No text annotation Not in a motif group | homologous IL_8C3A_053 IL_83039.13 | |
| IL_4V6I_121 | 1/DA/1187:1206, 1/DA/1298:1319 | No text annotation Not in a motif group | ||
| IL_4V6I_122 | 1/DA/1207:1210, 1/DA/1295:1297 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_002 IL_82068.2 | |
| IL_4V6I_123 | 1/DA/1218:1226, 1/DA/1283:1287 | Kink-turn Not in a motif group | homologous IL_5TBW_054 IL_90538.4 | |
| IL_4V6I_124 | 1/DA/1234:1238, 1/DA/1250:1254 | No text annotation Not in a motif group | ||
| IL_4V6I_125 | 1/DA/1262:1266, 1/DA/1275:1277 | No text annotation Not in a motif group | homologous IL_8C3A_059 IL_05564.2 | |
| IL_4V6I_126 | 1/DA/1376:1378, 1/DA/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_4V6I_127 | 1/DA/1388:1394, 1/DA/1415:1419 | No text annotation Not in a motif group | homologous IL_8C3A_063 IL_70923.2 | |
| IL_4V6I_128 | 1/DA/1394:1396, 1/DA/1413:1415 | No text annotation Not in a motif group | geometric IL_1MFQ_003 IL_53251.2 | |
| IL_4V6I_131 | 1/DA/1444:1451, 1/DA/2353:2359 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge Not in a motif group | geometric IL_4V9F_012 IL_59724.1 | |
| IL_4V6I_132 | 1/DA/1492:1495, 1/DA/1835:1836 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_050 IL_50694.2 | |
| IL_4V6I_133 | 1/DA/1501:1505, 1/DA/1513:1515 | C-loop Not in a motif group | geometric IL_7RQB_104 IL_63596.6 | |
| IL_4V6I_134 | 1/DA/1532:1536, 1/DA/1585:1590 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_89002.2 | |
| IL_4V6I_135 | 1/DA/1624:1630, 1/DA/1811:1820 | No text annotation Not in a motif group | ||
| IL_4V6I_136 | 1/DA/1645:1649, 1/DA/1806:1810 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.8 | |
| IL_4V6I_137 | 1/DA/1661:1663, 1/DA/1786:1788 | No text annotation Not in a motif group | geometric IL_5ZTM_001 IL_95997.1 | |
| IL_4V6I_138 | 1/DA/1665:1671, 1/DA/1776:1784 | No text annotation Not in a motif group | ||
| IL_4V6I_139 | 1/DA/1695:1698, 1/DA/1748:1752 | No text annotation Not in a motif group | geometric IL_7RQB_046 IL_68574.2 | |
| IL_4V6I_140 | 1/DA/1698:1707, 1/DA/1739:1748 | No text annotation Not in a motif group | ||
| IL_4V6I_141 | 1/DA/1707:1711, 1/DA/1735:1739 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4EYA_010 IL_30621.2 | |
| IL_4V6I_142 | 1/DA/1711:1718, 1/DA/1726:1735 | No text annotation Not in a motif group | ||
| IL_4V6I_143 | 1/DA/1883:1889, 1/DA/2346:2349 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_49460.2 | |
| IL_4V6I_144 | 1/DA/1895:1897, 1/DA/2338:2340 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_4V6I_145 | 1/DA/1898:1901, 1/DA/2336:2337 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4WF9_064 IL_50694.2 | |
| IL_4V6I_146 | 1/DA/1901:1906, 1/DA/2333:2336 | No text annotation Not in a motif group | homologous IL_8C3A_083 IL_82842.2 | |
| IL_4V6I_147 | 1/DA/1918:1923, 1/DA/1928:1934 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_4V6I_148 | 1/DA/1940:1942, 1/DA/2106:2108 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_4V6I_149 | 1/DA/1947:1948, 1/DA/2098:2101 | No text annotation Not in a motif group | ||
| IL_4V6I_150 | 1/DA/1965:1968, 1/DA/2054:2057 | No text annotation Not in a motif group | ||
| IL_4V6I_151 | 1/DA/1971:1976, 1/DA/2046:2051 | No text annotation Not in a motif group | ||
| IL_4V6I_152 | 1/DA/1981:1982, 1/DA/2039:2041 | Single stack bend Not in a motif group | geometric IL_4WF9_007 IL_76488.2 | |
| IL_4V6I_153 | 1/DA/1988:1991, 1/DA/2030:2033 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_001 IL_30621.2 | |
| IL_4V6I_154 | 1/DA/1994:1996, 1/DA/2025:2027 | No text annotation Not in a motif group | geometric IL_7A0S_107 IL_51629.2 | |
| IL_4V6I_155 | 1/DA/2128:2130, 1/DA/2322:2325 | Self complementary Not in a motif group | geometric IL_5M0H_001 IL_82068.2 | |
| IL_4V6I_156 | 1/DA/2156:2162, 1/DA/2172:2180 | Kink-turn related Not in a motif group | geometric IL_7RQB_070 IL_17069.3 | |
| IL_4V6I_157 | 1/DA/2196:2199, 1/DA/2245:2246 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_88739.1 | |
| IL_4V6I_158 | 1/DA/2200:2201, 1/DA/2241:2244 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_085 IL_16396.2 | |
| IL_4V6I_159 | 1/DA/2204:2206, 1/DA/2237:2238 | Single stack bend Not in a motif group | geometric IL_4V9F_081 IL_76488.2 | |
| IL_4V6I_160 | 1/DA/2206:2210, 1/DA/2235:2237 | No text annotation Not in a motif group | homologous IL_8C3A_092 IL_65006.1 | |
| IL_4V6I_161 | 1/DA/2211:2217, 1/DA/2228:2234 | No text annotation Not in a motif group | homologous IL_5TBW_088 IL_36973.6 | |
| IL_4V6I_162 | 1/DA/2276:2277, 1/DA/2307:2310 | No text annotation Not in a motif group | geometric IL_4V9F_070 IL_59677.2 | |
| IL_4V6I_163 | 1/DA/2277:2288, 1/DA/2304:2307 | No text annotation Not in a motif group | homologous IL_5TBW_090 IL_81589.2 | |
| IL_4V6I_164 | 1/DA/2391:2394, 1/DA/2986:2988 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.2 | |
| IL_4V6I_165 | 1/DA/2396:2398, 1/DA/2981:2984 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_54678.5 | |
| IL_4V6I_166 | 1/DA/2409:2411, 1/DA/2811:2812 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.13 | |
| IL_4V6I_167 | 1/DA/2412:2413, 1/DA/2807:2810 | No text annotation Not in a motif group | homologous IL_8C3A_099 IL_42622.2 | |
| IL_4V6I_168 | 1/DA/2423:2425, 1/DA/2604:2607 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.7 | |
| IL_4V6I_169 | 1/DA/2444:2445, 1/DA/2501:2503 | No text annotation Not in a motif group | ||
| IL_4V6I_170 | 1/DA/2451:2462, 1/DA/2493:2495 | No text annotation Not in a motif group | ||
| IL_4V6I_171 | 1/DA/2466:2469, 1/DA/2476:2489 | No text annotation Not in a motif group | ||
| IL_4V6I_172 | 1/DA/2666:2668, 1/DA/2686:2690 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.7 | |
| IL_4V6I_173 | 1/DA/2718:2721, 1/DA/2735:2738 | No text annotation Not in a motif group | ||
| IL_4V6I_175 | 1/DA/2823:2824, 1/DA/2865:2867 | Major groove platform Not in a motif group | geometric IL_4V9F_082 IL_27635.1 | |
| IL_4V6I_176 | 1/DA/2824:2826, 1/DA/2863:2865 | No text annotation Not in a motif group | homologous IL_5TBW_103 IL_95997.1 | |
| IL_4V6I_177 | 1/DA/2826:2828, 1/DA/2862:2863 | Major groove platform Not in a motif group | geometric IL_4V9F_083 IL_76223.2 | |
| IL_4V6I_178 | 1/DA/2828:2831, 1/DA/2857:2862 | No text annotation Not in a motif group | ||
| IL_4V6I_179 | 1/DA/2835:2839, 1/DA/2849:2853 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.8 | |
| IL_4V6I_180 | 1/DA/2876:2877, 1/DA/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_4V6I_181 | 1/DA/2879:2881, 1/DA/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_087 IL_90933.2 | |
| IL_4V6I_182 | 1/DA/2881:2882, 1/DA/2940:2943 | No text annotation Not in a motif group | homologous IL_8C3A_117 IL_71530.2 | |
| IL_4V6I_183 | 1/DA/2889:2891, 1/DA/2912:2914 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_4V6I_184 | 1/DA/2891:2892, 1/DA/2909:2912 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_111 IL_95601.3 | |
| IL_4V6I_185 | 1/DA/2918:2920, 1/DA/2926:2928 | No text annotation Not in a motif group | homologous IL_8C3A_120 IL_95997.1 | |
| IL_4V6I_186 | 1/DA/2960:2961, 1/DA/2970:2972 | Single bulged A Not in a motif group | geometric IL_5TBW_372 IL_37497.2 | |
| IL_4V6I_187 | 1/DA/3003:3007, 1/DA/3139:3145 | No text annotation Not in a motif group | ||
| IL_4V6I_188 | 1/DA/3012:3014, 1/DA/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_4V6I_189 | 1/DA/3019:3025, 1/DA/3030:3035 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_4V9F_092 IL_76042.2 | |
| IL_4V6I_190 | 1/DA/3047:3051, 1/DA/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_4V6I_191 | 1/DA/3054:3059, 1/DA/3084:3088 | No text annotation Not in a motif group | ||
| IL_4V6I_193 | 1/DA/3103:3107, 1/DA/3127:3131 | No text annotation Not in a motif group | ||
| IL_4V6I_194 | 1/DA/3164:3166, 1/DA/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_4V6I_195 | 1/DA/3211:3214, 1/DA/3219:3224 | No text annotation Not in a motif group | ||
| IL_4V6I_196 | 1/DA/3233:3235, 1/DA/3253:3254 | No text annotation Not in a motif group | ||
| IL_4V6I_197 | 1/DA/3236:3238, 1/DA/3249:3252 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_4V6I_198 | 1/DA/3300:3303, 1/DA/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_003 IL_30621.2 | |
| IL_4V6I_199 | 1/DA/3324:3325, 1/DA/3381:3383 | Single stack bend Not in a motif group | geometric IL_5TBW_035 IL_76488.2 | |
| IL_4V6I_201 | 1/DA/3332:3337, 1/DA/3367:3371 | No text annotation Not in a motif group | geometric IL_4WF9_108 IL_83162.5 | |
| IL_4V6I_202 | 1/DA/3340:3345, 1/DA/3360:3364 | No text annotation Not in a motif group | ||
| IL_4V6I_204 | 1/DC/20:27, 1/DC/52:58 | No text annotation Not in a motif group | ||
| IL_4V6I_205 | 1/DC/28:31, 1/DC/46:51 | No text annotation Not in a motif group | ||
| IL_4V6I_206 | 1/DC/32:36, 1/DC/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_4V9F_104 IL_58103.6 | |
| IL_4V6I_207 | 1/DC/70:78, 1/DC/97:103 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6I_003 | No text annotation | ||
| IL_4V6I_009 | No text annotation | ||
| IL_4V6I_014 | No text annotation | ||
| IL_4V6I_022 | No text annotation | ||
| IL_4V6I_040 | No text annotation | ||
| IL_4V6I_045 | No text annotation | ||
| IL_4V6I_070 | Not an internal loop | ||
| IL_4V6I_085 | No text annotation | ||
| IL_4V6I_107 | No text annotation | ||
| IL_4V6I_129 | No text annotation | ||
| IL_4V6I_130 | Isolated cWH basepair | ||
| IL_4V6I_174 | No text annotation | ||
| IL_4V6I_192 | No text annotation | ||
| IL_4V6I_200 | No text annotation | ||
| IL_4V6I_203 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V6I_001 | 1/CA/41:42, 1/CA/433:439, 1/CA/464:466 | No text annotation Not in a motif group | ||
| J3_4V6I_002 | 1/CA/881:884, 1/CA/928:937, 1/CA/942:947 | No text annotation Not in a motif group | ||
| J3_4V6I_003 | 1/CA/1036:1040, 1/CA/1078:1083, 1/CA/1090:1095 | No text annotation Not in a motif group | ||
| J3_4V6I_004 | 1/CA/1161:1164, 1/CA/1581:1587, 1/CA/1609:1616 | No text annotation Not in a motif group | ||
| J3_4V6I_005 | 1/CA/1168:1171, 1/CA/1468:1470, 1/CA/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_4V6I_006 | 1/CA/1180:1187, 1/CA/1198:1209, 1/CA/1454:1458 | No text annotation Not in a motif group | ||
| J3_4V6I_007 | 1/CA/1283:1289, 1/CA/1326:1333, 1/CA/1419:1424 | No text annotation Not in a motif group | ||
| J3_4V6I_008 | 1/CA/1293:1294, 1/CA/1303:1308, 1/CA/1317:1322 | No text annotation Not in a motif group | ||
| J3_4V6I_009 | 1/CA/1337:1338, 1/CA/1386:1392, 1/CA/1406:1415 | No text annotation Not in a motif group | ||
| J3_4V6I_010 | 1/CA/1470:1474, 1/CA/1533:1540, 1/CA/1571:1574 | No text annotation Not in a motif group | ||
| J3_4V6I_011 | 1/DA/186:189, 1/DA/205:214, 1/DA/226:229 | No text annotation Not in a motif group | ||
| J3_4V6I_012 | 1/DA/369:376, 1/DA/403:404, 1/DB/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_4V6I_013 | 1/DA/814:820, 1/DA/905:907, 1/DA/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_4V6I_014 | 1/DA/828:831, 1/DA/863:867, 1/DA/892:897 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_4V6I_016 | 1/DA/1230:1232, 1/DA/1256:1262, 1/DA/1277:1279 | No text annotation Not in a motif group | homologous J3_8C3A_005 NA | |
| J3_4V6I_017 | 1/DA/1479:1485, 1/DA/1857:1860, 1/DA/1870:1874 | No text annotation Not in a motif group | ||
| J3_4V6I_018 | 1/DA/1488:1491, 1/DA/1837:1843, 1/DA/1852:1854 | No text annotation Not in a motif group | ||
| J3_4V6I_019 | 1/DA/1526:1531, 1/DA/1591:1595, 1/DA/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_4V6I_022 | 1/DA/2432:2435, 1/DA/2512:2517, 1/DA/2590:2597 | No text annotation Not in a motif group | homologous J3_5TBW_012 NA | |
| J3_4V6I_023 | 1/DA/2529:2532, 1/DA/2547:2563, 1/DA/2578:2581 | No text annotation Not in a motif group | ||
| J3_4V6I_024 | 1/DA/2651:2653, 1/DA/2754:2765, 1/DA/2793:2798 | No text annotation Not in a motif group | ||
| J3_4V6I_025 | 1/DA/2664:2666, 1/DA/2690:2692, 1/DA/2701:2706 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_4V6I_026 | 1/DA/2886:2889, 1/DA/2914:2916, 1/DA/2930:2936 | No text annotation Not in a motif group | homologous J3_5TBW_014 NA | |
| J3_4V6I_027 | 1/DA/3299:3300, 1/DA/3314:3320, 1/DA/3387:3389 | No text annotation Not in a motif group | ||
| J3_4V6I_028 | 1/DC/9:14, 1/DC/64:66, 1/DC/107:109 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V6I_015 | No text annotation | ||
| J3_4V6I_020 | No text annotation | ||
| J3_4V6I_021 | No text annotation |
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