Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6Q8Y_0011/2/7:17No text annotation
Not in a motif group
homologous
HL_4V88_186
HL_89881.2
HL_6Q8Y_0021/2/70:81No text annotation
Not in a motif group
HL_6Q8Y_0031/2/154:160Other HL
Not in a motif group
homologous
HL_4V88_188
HL_76539.5
HL_6Q8Y_0041/2/190:195No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_70072.1
HL_6Q8Y_0051/2/230:235No text annotation
Not in a motif group
homologous
HL_8C3A_196
HL_81440.1
HL_6Q8Y_0061/2/243:250T-loop with 1 bulged base
Not in a motif group
homologous
HL_4V88_191
HL_56241.1
HL_6Q8Y_0071/2/276:279No text annotation
Not in a motif group
homologous
HL_4V88_192
HL_53837.2
HL_6Q8Y_0081/2/330:338No text annotation
Not in a motif group
homologous
HL_4V88_193
HL_69023.2
HL_6Q8Y_0091/2/368:373No text annotation
Not in a motif group
homologous
HL_4V88_194
HL_50142.2
HL_6Q8Y_0101/2/393:404No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_6Q8Y_0111/2/414:419UNCG
Not in a motif group
homologous
HL_4V88_196
HL_03562.2
HL_6Q8Y_0121/2/450:456No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_26380.1
HL_6Q8Y_0131/2/491:496No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_70072.1
HL_6Q8Y_0141/2/520:532No text annotation
Not in a motif group
geometric
HL_4V88_199
HL_06285.3
HL_6Q8Y_0151/2/569:574Other HL
Not in a motif group
homologous
HL_4V88_200
HL_53845.3
HL_6Q8Y_0171/2/702:736No text annotation
Not in a motif group
HL_6Q8Y_0181/2/764:772No text annotation
Not in a motif group
homologous
HL_4V88_203
HL_46766.2
HL_6Q8Y_0191/2/777:783No text annotation
Not in a motif group
HL_6Q8Y_0201/2/828:844No text annotation
Not in a motif group
homologous
HL_4V88_205
HL_96598.1
HL_6Q8Y_0211/2/900:909No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_12326.1
HL_6Q8Y_0221/2/937:942Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_6Q8Y_0231/2/997:1007No text annotation
Not in a motif group
homologous
HL_4V88_208
HL_12326.1
HL_6Q8Y_0241/2/1055:1064No text annotation
Not in a motif group
HL_6Q8Y_0251/2/1084:1089Other HL
Not in a motif group
homologous
HL_4V88_210
HL_35490.2
HL_6Q8Y_0261/2/1121:1126GNRA
Not in a motif group
homologous
HL_4V88_211
HL_35490.2
HL_6Q8Y_0271/2/1188:1197No text annotation
Not in a motif group
homologous
HL_4V88_212
HL_73530.2
HL_6Q8Y_0281/2/1238:1247No text annotation
Not in a motif group
homologous
HL_4V88_213
HL_53597.4
HL_6Q8Y_0291/2/1296:1301GNRA
Not in a motif group
homologous
HL_4V88_214
HL_35490.2
HL_6Q8Y_0301/2/1309:1316No text annotation
Not in a motif group
homologous
HL_4V88_215
HL_71554.2
HL_6Q8Y_0311/2/1359:1364No text annotation
Not in a motif group
homologous
HL_4V88_216
HL_61849.1
HL_6Q8Y_0321/2/1396:1402No text annotation
Not in a motif group
homologous
HL_4V88_217
HL_35490.2
HL_6Q8Y_0331/2/1501:1506GNRA
Not in a motif group
homologous
HL_4V88_218
HL_35490.2
HL_6Q8Y_0341/2/1550:1561No text annotation
Not in a motif group
homologous
HL_4V88_219
HL_22554.1
HL_6Q8Y_0351/2/1594:1602No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_75828.1
HL_6Q8Y_0371/2/1778:1783Other HL
Not in a motif group
homologous
HL_4V88_222
HL_16173.1
HL_6Q8Y_0381/BQ/38:45No text annotation
Not in a motif group
homologous
HL_5TBW_001
HL_06192.2
HL_6Q8Y_0391/BQ/69:74No text annotation
Not in a motif group
homologous
HL_5TBW_002
HL_02862.2
HL_6Q8Y_0401/BQ/90:96No text annotation
Not in a motif group
homologous
HL_5TBW_003
HL_67216.7
HL_6Q8Y_0411/BQ/132:136No text annotation
Not in a motif group
homologous
HL_8C3A_004
HL_98426.1
HL_6Q8Y_0421/BQ/194:201No text annotation
Not in a motif group
homologous
HL_8C3A_005
HL_41998.1
HL_6Q8Y_0431/BQ/208:212No text annotation
Not in a motif group
homologous
HL_8C3A_006
HL_98984.4
HL_6Q8Y_0441/BQ/216:224No text annotation
Not in a motif group
homologous
HL_5TBW_007
HL_08002.9
HL_6Q8Y_0451/BQ/278:287No text annotation
Not in a motif group
homologous
HL_8C3A_008
HL_71554.2
HL_6Q8Y_0461/BQ/303:312No text annotation
Not in a motif group
homologous
HL_8C3A_009
HL_12078.4
HL_6Q8Y_0471/BQ/357:362No text annotation
Not in a motif group
homologous
HL_8C3A_010
HL_35490.2
HL_6Q8Y_0481/BQ/382:387No text annotation
Not in a motif group
homologous
HL_8C3A_011
HL_35490.2
HL_6Q8Y_0491/BQ/543:548No text annotation
Not in a motif group
geometric
HL_4V88_198
HL_91104.1
HL_6Q8Y_0501/BQ/599:604GNRA
Not in a motif group
homologous
HL_5TBW_013
HL_35490.2
HL_6Q8Y_0511/BQ/640:649No text annotation
Not in a motif group
homologous
HL_8C3A_014
HL_41998.1
HL_6Q8Y_0521/BQ/686:694No text annotation
Not in a motif group
homologous
HL_8C3A_015
HL_03345.1
HL_6Q8Y_0531/BQ/707:712No text annotation
Not in a motif group
homologous
HL_8C3A_016
HL_35490.2
HL_6Q8Y_0541/BQ/732:737GNRA
Not in a motif group
homologous
HL_5TBW_017
HL_35490.2
HL_6Q8Y_0551/BQ/763:768No text annotation
Not in a motif group
homologous
HL_8C3A_018
HL_34168.2
HL_6Q8Y_0561/BQ/844:849No text annotation
Not in a motif group
homologous
HL_8C3A_019
HL_35490.2
HL_6Q8Y_0571/BQ/876:885No text annotation
Not in a motif group
homologous
HL_5TBW_020
HL_39334.6
HL_6Q8Y_0581/BQ/910:918No text annotation
Not in a motif group
homologous
HL_5TBW_021
HL_33817.1
HL_6Q8Y_0591/BQ/958:963No text annotation
Not in a motif group
homologous
HL_8C3A_022
HL_96598.1
HL_6Q8Y_0601/BQ/1023:1029GNRA
Not in a motif group
homologous
HL_5TBW_023
HL_35490.2
HL_6Q8Y_0611/BQ/1076:1083No text annotation
Not in a motif group
homologous
HL_8C3A_024
HL_71554.2
HL_6Q8Y_0621/BQ/1126:1132GNRA
Not in a motif group
homologous
HL_5TBW_025
HL_35490.2
HL_6Q8Y_0631/BQ/1148:1155No text annotation
Not in a motif group
homologous
HL_8C3A_026
HL_64430.2
HL_6Q8Y_0641/BQ/1233:1255No text annotation
Not in a motif group
HL_6Q8Y_0651/BQ/1266:1275No text annotation
Not in a motif group
HL_6Q8Y_0671/BQ/1403:1408No text annotation
Not in a motif group
homologous
HL_8C3A_030
HL_35490.2
HL_6Q8Y_0681/BQ/1462:1470No text annotation
Not in a motif group
homologous
HL_8C3A_031
HL_41998.1
HL_6Q8Y_0691/BQ/1506:1512No text annotation
Not in a motif group
homologous
HL_8C3A_032
HL_46680.1
HL_6Q8Y_0701/BQ/1544:1549No text annotation
Not in a motif group
homologous
HL_8C3A_033
HL_76539.5
HL_6Q8Y_0721/BQ/1599:1608No text annotation
Not in a motif group
homologous
HL_5TBW_035
HL_69023.2
HL_6Q8Y_0731/BQ/1634:1639No text annotation
Not in a motif group
homologous
HL_8C3A_036
HL_35490.2
HL_6Q8Y_0741/BQ/1680:1688No text annotation
Not in a motif group
homologous
HL_8C3A_037
HL_84827.1
HL_6Q8Y_0751/BQ/1719:1725No text annotation
Not in a motif group
homologous
HL_5TBW_038
HL_86373.3
HL_6Q8Y_0761/BQ/1760:1765Other HL
Not in a motif group
homologous
HL_5TBW_039
HL_91104.1
HL_6Q8Y_0771/BQ/1792:1796No text annotation
Not in a motif group
homologous
HL_5TBW_040
HL_38927.5
HL_6Q8Y_0781/BQ/1844:1851No text annotation
Not in a motif group
homologous
HL_8C3A_041
HL_64430.2
HL_6Q8Y_0791/BQ/1862:1868GNRA with one bulged base
Not in a motif group
homologous
HL_5TBW_042
HL_35490.2
HL_6Q8Y_0801/BQ/1923:1928No text annotation
Not in a motif group
homologous
HL_8C3A_043
HL_03562.2
HL_6Q8Y_0821/BQ/2110:2114No text annotation
Not in a motif group
homologous
HL_8C3A_045
HL_86735.1
HL_6Q8Y_0831/BQ/2135:2145No text annotation
Not in a motif group
homologous
HL_8C3A_046
HL_43613.5
HL_6Q8Y_0841/BQ/2164:2170No text annotation
Not in a motif group
homologous
HL_8C3A_047
HL_35490.2
HL_6Q8Y_0851/BQ/2220:2225Other HL
Not in a motif group
homologous
HL_5TBW_048
HL_35490.2
HL_6Q8Y_0861/BQ/2253:2263No text annotation
Not in a motif group
homologous
HL_8C3A_049
HL_71924.2
HL_6Q8Y_0871/BQ/2292:2300No text annotation
Not in a motif group
homologous
HL_8C3A_050
HL_51824.1
HL_6Q8Y_0881/BQ/2369:2378No text annotation
Not in a motif group
homologous
HL_8C3A_051
HL_90642.6
HL_6Q8Y_0901/BQ/2535:2544No text annotation
Not in a motif group
HL_6Q8Y_0911/BQ/2568:2573No text annotation
Not in a motif group
HL_6Q8Y_0921/BQ/2616:2624No text annotation
Not in a motif group
homologous
HL_8C3A_055
HL_53171.2
HL_6Q8Y_0931/BQ/2633:2645No text annotation
Not in a motif group
homologous
HL_5TBW_055
HL_19870.6
HL_6Q8Y_0941/BQ/2673:2681No text annotation
Not in a motif group
homologous
HL_5TBW_056
HL_76406.4
HL_6Q8Y_0951/BQ/2693:2700No text annotation
Not in a motif group
homologous
HL_5TBW_057
HL_12078.4
HL_6Q8Y_0961/BQ/2724:2732No text annotation
Not in a motif group
homologous
HL_8C3A_059
HL_92229.2
HL_6Q8Y_0971/BQ/2744:2749No text annotation
Not in a motif group
homologous
HL_8C3A_060
HL_35490.2
HL_6Q8Y_0981/BQ/2776:2784No text annotation
Not in a motif group
homologous
HL_8C3A_061
HL_96598.1
HL_6Q8Y_0991/BQ/2840:2848No text annotation
Not in a motif group
homologous
HL_5TBW_061
HL_06192.2
HL_6Q8Y_1001/BQ/2897:2904No text annotation
Not in a motif group
homologous
HL_5TBW_062
HL_91104.1
HL_6Q8Y_1011/BQ/2920:2926No text annotation
Not in a motif group
homologous
HL_5TBW_063
HL_43656.2
HL_6Q8Y_1021/BQ/2963:2968No text annotation
Not in a motif group
homologous
HL_8C3A_065
HL_35490.2
HL_6Q8Y_1031/BQ/3025:3030No text annotation
Not in a motif group
homologous
HL_8C3A_066
HL_35490.2
HL_6Q8Y_1041/BQ/3068:3073Ribsomal LSU H95
Not in a motif group
homologous
HL_5TBW_066
HL_46680.1
HL_6Q8Y_1051/BQ/3110:3124No text annotation
Not in a motif group
homologous
HL_8C3A_068
HL_56677.7
HL_6Q8Y_1061/BQ/3194:3197No text annotation
Not in a motif group
homologous
HL_5TBW_068
HL_98426.1
HL_6Q8Y_1071/BQ/3240:3247No text annotation
Not in a motif group
homologous
HL_5TBW_069
HL_26380.1
HL_6Q8Y_1081/BQ/3303:3311No text annotation
Not in a motif group
homologous
HL_8C3A_071
HL_64690.1
HL_6Q8Y_1091/BQ/3350:3353No text annotation
Not in a motif group
geometric
HL_6JOO_002
HL_38927.5
HL_6Q8Y_1101/BR/36:41No text annotation
Not in a motif group
homologous
HL_5TBW_185
HL_87939.2
HL_6Q8Y_1111/BR/88:93GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_35490.2
HL_6Q8Y_1121/BS/69:89No text annotation
Not in a motif group
HL_6Q8Y_1131/BS/108:114No text annotation
Not in a motif group
homologous
HL_5TBW_075
HL_53619.1
HL_6Q8Y_1141/BS/124:129No text annotation
Not in a motif group
homologous
HL_5TBW_076
HL_96851.2
HL_6Q8Y_1151/m/12:23No text annotation
Not in a motif group
homologous
HL_1SER_001
NA
HL_6Q8Y_1161/m/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_4V9Q_214
HL_53597.4
HL_6Q8Y_1171/m/52:60T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_2BTE_004
HL_22280.4
HL_6Q8Y_1181/n/12:23No text annotation
Not in a motif group
homologous
HL_1SER_001
NA
HL_6Q8Y_1191/n/31:39No text annotation
Not in a motif group
homologous
HL_6CFJ_107
NA
HL_6Q8Y_1201/n/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_6PMO_005
HL_22280.4

Problematic loops

#loop idProblemSequence
HL_6Q8Y_016No text annotation
HL_6Q8Y_036No text annotation
HL_6Q8Y_066No text annotation
HL_6Q8Y_071No text annotation
HL_6Q8Y_081No text annotation
HL_6Q8Y_089No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6Q8Y_0011/2/24:26,
1/2/600:601
Single bulged C
Not in a motif group
homologous
IL_4V88_384
IL_61258.12
IL_6Q8Y_0021/2/35:37,
1/2/471:473
UC cWW
Not in a motif group
geometric
IL_4V88_385
IL_70707.2
IL_6Q8Y_0031/2/37:41,
1/2/466:471
No text annotation
Not in a motif group
geometric
IL_4V88_386
IL_41507.1
IL_6Q8Y_0041/2/42:48,
1/2/431:433
No text annotation
Not in a motif group
geometric
IL_4V88_387
IL_33912.1
IL_6Q8Y_0051/2/48:53,
1/2/427:431
No text annotation
Not in a motif group
IL_6Q8Y_0061/2/58:63,
1/2/87:89
No text annotation
Not in a motif group
homologous
IL_4V88_389
IL_95004.1
IL_6Q8Y_0071/2/64:69,
1/2/82:86
No text annotation
Not in a motif group
homologous
IL_4V88_390
IL_77691.2
IL_6Q8Y_0081/2/109:112,
1/2/302:305
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_391
IL_30621.4
IL_6Q8Y_0091/2/113:116,
1/2/300:301
Multiple bulged bases
Not in a motif group
homologous
IL_4V88_392
IL_44546.1
IL_6Q8Y_0101/2/117:122,
1/2/295:299
No text annotation
Not in a motif group
homologous
IL_4V88_393
IL_64181.2
IL_6Q8Y_0111/2/144:149,
1/2/165:171
tWH-tWH-tHW-tHW
Not in a motif group
geometric
IL_4LFB_009
IL_39753.1
IL_6Q8Y_0121/2/150:152,
1/2/162:164
Isolated cWH basepair
Not in a motif group
geometric
IL_3W3S_003
IL_70707.2
IL_6Q8Y_0131/2/186:190,
1/2/195:199
Triple sheared
Not in a motif group
geometric
IL_5J7L_274
IL_56467.8
IL_6Q8Y_0141/2/204:206,
1/2/259:263
Major groove platform with extra cWW
Not in a motif group
homologous
IL_4V88_397
IL_05564.2
IL_6Q8Y_0151/2/206:208,
1/2/257:259
No text annotation
Not in a motif group
geometric
IL_4V88_398
IL_86319.2
IL_6Q8Y_0161/2/265:267,
1/2/288:289
Single bulged A
Not in a motif group
homologous
IL_4V88_399
IL_37497.6
IL_6Q8Y_0171/2/270:273,
1/2/283:285
No text annotation
Not in a motif group
homologous
IL_4V88_400
IL_47298.1
IL_6Q8Y_0181/2/275:276,
1/2/279:281
Single bulged U
Not in a motif group
geometric
IL_4V88_401
IL_83039.16
IL_6Q8Y_0191/2/311:316,
1/2/348:355
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4V88_402
IL_45067.2
IL_6Q8Y_0201/2/318:323,
1/2/345:346
No text annotation
Not in a motif group
homologous
IL_4V88_403
IL_48100.2
IL_6Q8Y_0211/2/363:365,
1/2/376:381
No text annotation
Not in a motif group
homologous
IL_4V88_404
IL_11347.1
IL_6Q8Y_0221/2/389:391,
1/2/406:408
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_405
IL_70707.2
IL_6Q8Y_0231/2/411:413,
1/2/420:422
Isolated near basepair
Not in a motif group
homologous
IL_4V88_406
IL_52767.4
IL_6Q8Y_0241/2/439:441,
1/2/463:464
Single bulged U
Not in a motif group
homologous
IL_4V88_407
IL_83039.16
IL_6Q8Y_0251/2/443:447,
1/2/460:461
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_6Q8Y_0261/2/447:448,
1/2/458:460
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.3
IL_6Q8Y_0271/2/481:482,
1/2/505:507
Single bulged A
Not in a motif group
homologous
IL_4V88_409
IL_37497.6
IL_6Q8Y_0281/2/514:516,
1/2/536:543
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_7RQB_082
IL_38958.7
IL_6Q8Y_0291/2/517:518,
1/2/533:535
Minor groove platform
Not in a motif group
geometric
IL_4LFB_004
IL_80097.1
IL_6Q8Y_0301/2/518:520,
1/2/532:533
Minor groove platform
Not in a motif group
geometric
IL_4V88_412
IL_80097.1
IL_6Q8Y_0311/2/550:557,
1/2/587:588
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4V88_413
IL_15861.7
IL_6Q8Y_0321/2/557:559,
1/2/586:587
Single bulged U
Not in a motif group
geometric
IL_6UFG_004
IL_83039.16
IL_6Q8Y_0331/2/562:568,
1/2/575:583
No text annotation
Not in a motif group
homologous
IL_4V88_415
IL_55871.1
IL_6Q8Y_0341/2/616:622,
1/2/1104:1105
No text annotation
Not in a motif group
homologous
IL_4V88_416
IL_69996.1
IL_6Q8Y_0351/2/624:626,
1/2/973:975
No text annotation
Not in a motif group
homologous
IL_4V88_417
IL_86319.2
IL_6Q8Y_0361/2/627:631,
1/2/968:972
tSH-tHW-tHS
Not in a motif group
homologous
IL_4V88_418
IL_17136.1
IL_6Q8Y_0371/2/646:648,
1/2/686:688
No text annotation
Not in a motif group
homologous
IL_4V88_419
IL_86319.2
IL_6Q8Y_0381/2/746:747,
1/2/802:805
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4V88_423
IL_09061.8
IL_6Q8Y_0391/2/748:750,
1/2/799:801
No text annotation
Not in a motif group
homologous
IL_4V88_424
IL_86319.2
IL_6Q8Y_0401/2/751:759,
1/2/791:798
No text annotation
Not in a motif group
homologous
IL_4V88_425
IL_69091.1
IL_6Q8Y_0411/2/817:822,
1/2/850:854
No text annotation
Not in a motif group
IL_6Q8Y_0421/2/865:866,
1/2/962:965
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4V88_428
IL_50694.2
IL_6Q8Y_0431/2/868:870,
1/2/957:960
No text annotation
Not in a motif group
geometric
IL_6OL3_002
IL_86319.2
IL_6Q8Y_0441/2/871:874,
1/2/953:956
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_430
IL_30621.4
IL_6Q8Y_0451/2/874:878,
1/2/950:953
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_431
IL_30621.4
IL_6Q8Y_0461/2/885:888,
1/2/924:927
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_432
IL_30621.4
IL_6Q8Y_0471/2/893:899,
1/2/910:919
No text annotation
Not in a motif group
homologous
IL_8C3A_440
IL_22252.1
IL_6Q8Y_0481/2/985:990,
1/2/1014:1016
Other IL
Not in a motif group
homologous
IL_4V88_435
IL_22046.1
IL_6Q8Y_0501/2/1034:1036,
1/2/1095:1101
No text annotation
Not in a motif group
homologous
IL_4V88_437
IL_19557.3
IL_6Q8Y_0511/2/1041:1044,
1/2/1074:1077
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_438
IL_30621.4
IL_6Q8Y_0521/2/1051:1053,
1/2/1066:1067
Single bulged U
Not in a motif group
homologous
IL_4V88_439
IL_83039.16
IL_6Q8Y_0531/2/1111:1118,
1/2/1129:1134
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4V88_440
IL_24606.2
IL_6Q8Y_0541/2/1146:1147,
1/2/1630:1632
Single bulged A
Not in a motif group
homologous
IL_4V88_441
IL_37497.6
IL_6Q8Y_0551/2/1149:1151,
1/2/1627:1628
Single bulged G
Not in a motif group
homologous
IL_4V88_442
IL_00225.3
IL_6Q8Y_0561/2/1157:1160,
1/2/1617:1621
C-loop
Not in a motif group
homologous
IL_4V88_443
IL_63596.6
IL_6Q8Y_0571/2/1173:1175,
1/2/1464:1466
No text annotation
Not in a motif group
homologous
IL_4V88_444
IL_86319.2
IL_6Q8Y_0581/2/1178:1179,
1/2/1459:1461
Minor groove platform
Not in a motif group
homologous
IL_4V88_445
IL_42622.4
IL_6Q8Y_0591/2/1213:1215,
1/2/1448:1450
No text annotation
Not in a motif group
homologous
IL_4V88_446
IL_86319.2
IL_6Q8Y_0601/2/1224:1230,
1/2/1257:1259
No text annotation
Not in a motif group
IL_6Q8Y_0611/2/1230:1233,
1/2/1252:1257
No text annotation
Not in a motif group
IL_6Q8Y_0621/2/1234:1236,
1/2/1249:1251
No text annotation
Not in a motif group
homologous
IL_4V88_448
IL_27844.2
IL_6Q8Y_0631/2/1268:1270,
1/2/1440:1441
Single bulged U
Not in a motif group
homologous
IL_4V88_449
IL_83039.16
IL_6Q8Y_0641/2/1272:1276,
1/2/1436:1438
Isolated cWS basepair
Not in a motif group
geometric
IL_4V88_450
IL_76319.2
IL_6Q8Y_0651/2/1276:1278,
1/2/1430:1436
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_4V88_451
IL_92788.2
IL_6Q8Y_0661/2/1280:1281,
1/2/1426:1428
Single bulged A
Not in a motif group
homologous
IL_4V88_452
IL_37497.6
IL_6Q8Y_0671/2/1290:1292,
1/2/1323:1325
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_453
IL_70707.2
IL_6Q8Y_0681/2/1306:1308,
1/2/1317:1318
Minor groove platform
Not in a motif group
geometric
IL_4LFB_004
IL_80097.1
IL_6Q8Y_0691/2/1339:1342,
1/2/1383:1385
No text annotation
Not in a motif group
homologous
IL_4V88_455
IL_27844.2
IL_6Q8Y_0701/2/1345:1348,
1/2/1377:1380
Minor groove platform
Not in a motif group
homologous
IL_4V88_456
IL_76458.1
IL_6Q8Y_0711/2/1352:1354,
1/2/1369:1373
No text annotation
Not in a motif group
homologous
IL_4V88_457
IL_86319.2
IL_6Q8Y_0721/2/1389:1391,
1/2/1407:1412
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4V88_458
IL_58032.1
IL_6Q8Y_0731/2/1488:1494,
1/2/1513:1518
No text annotation
Not in a motif group
homologous
IL_4V88_460
IL_75461.4
IL_6Q8Y_0741/2/1495:1498,
1/2/1509:1512
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_461
IL_30621.4
IL_6Q8Y_0751/2/1636:1638,
1/2/1764:1767
No text annotation
Not in a motif group
homologous
IL_4V88_463
IL_36143.3
IL_6Q8Y_0761/2/1638:1641,
1/2/1760:1764
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_6Q8Y_0771/2/1642:1644,
1/2/1757:1759
No text annotation
Not in a motif group
homologous
IL_4V88_465
IL_86319.2
IL_6Q8Y_0781/2/1644:1647,
1/2/1753:1757
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_3WBM_002
IL_30621.4
IL_6Q8Y_0791/2/1650:1652,
1/2/1748:1750
AA cWW
Not in a motif group
homologous
IL_4V88_467
IL_86319.2
IL_6Q8Y_0801/2/1653:1656,
1/2/1744:1747
Double sheared
Not in a motif group
geometric
IL_4V88_468
IL_09705.10
IL_6Q8Y_0811/2/1656:1658,
1/2/1743:1744
Single bulged U
Not in a motif group
homologous
IL_4V88_469
IL_83039.16
IL_6Q8Y_0821/2/1665:1667,
1/2/1734:1736
No text annotation
Not in a motif group
homologous
IL_4V88_470
IL_70707.2
IL_6Q8Y_0831/2/1669:1672,
1/2/1729:1732
Double sheared
Not in a motif group
homologous
IL_4V88_471
IL_09705.10
IL_6Q8Y_0841/2/1672:1674,
1/2/1727:1729
No text annotation
Not in a motif group
geometric
IL_3HHN_004
IL_86319.2
IL_6Q8Y_0851/2/1675:1678,
1/2/1723:1726
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_473
IL_30621.4
IL_6Q8Y_0861/2/1678:1682,
1/2/1719:1723
Triple sheared
Not in a motif group
geometric
IL_4V88_474
IL_56467.8
IL_6Q8Y_0871/BQ/7:8,
1/BS/150:152
No text annotation
Not in a motif group
homologous
IL_8C3A_002
IL_61258.12
IL_6Q8Y_0881/BQ/13:15,
1/BS/144:145
No text annotation
Not in a motif group
homologous
IL_8C3A_003
IL_83039.16
IL_6Q8Y_0891/BQ/27:28,
1/BQ/56:58
No text annotation
Not in a motif group
homologous
IL_8C3A_004
IL_76488.4
IL_6Q8Y_0901/BQ/31:38,
1/BQ/45:53
tSH-tHW-tHH-tHS
Not in a motif group
geometric
IL_5TBW_005
IL_35728.2
IL_6Q8Y_0911/BQ/82:89,
1/BQ/97:103
No text annotation
Not in a motif group
homologous
IL_5TBW_006
IL_88613.1
IL_6Q8Y_0921/BQ/123:124,
1/BQ/144:149
No text annotation
Not in a motif group
geometric
IL_5TBW_007
IL_19724.2
IL_6Q8Y_0931/BQ/125:127,
1/BQ/141:143
No text annotation
Not in a motif group
homologous
IL_8C3A_008
IL_86319.2
IL_6Q8Y_0941/BQ/163:165,
1/BQ/257:258
Single stack bend
Not in a motif group
homologous
IL_5TBW_009
IL_76488.4
IL_6Q8Y_0951/BQ/169:170,
1/BQ/248:253
No text annotation
Not in a motif group
homologous
IL_5TBW_010
IL_74684.1
IL_6Q8Y_0961/BQ/177:178,
1/BQ/238:241
No text annotation
Not in a motif group
homologous
IL_8C3A_012
IL_76488.4
IL_6Q8Y_0971/BQ/189:191,
1/BQ/204:205
No text annotation
Not in a motif group
homologous
IL_8C3A_013
IL_83039.16
IL_6Q8Y_0981/BQ/337:339,
1/BS/25:26
Single bulged A
Not in a motif group
homologous
IL_5TBW_013
IL_37497.6
IL_6Q8Y_0991/BQ/376:379,
1/BQ/390:403
No text annotation
Not in a motif group
homologous
IL_8C3A_015
IL_60992.6
IL_6Q8Y_1001/BQ/404:410,
1/BS/13:19
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_5TBW_015
IL_66414.6
IL_6Q8Y_1011/BQ/429:431,
1/BQ/628:630
No text annotation
Not in a motif group
homologous
IL_5TBW_016
IL_70707.2
IL_6Q8Y_1031/BQ/512:513,
1/BQ/577:579
No text annotation
Not in a motif group
homologous
IL_8C3A_020
IL_37497.6
IL_6Q8Y_1041/BQ/517:525,
1/BQ/567:573
No text annotation
Not in a motif group
homologous
IL_5TBW_019
IL_23992.1
IL_6Q8Y_1051/BQ/531:538,
1/BQ/553:561
No text annotation
Not in a motif group
homologous
IL_5TBW_020
IL_07703.1
IL_6Q8Y_1061/BQ/668:670,
1/BQ/792:794
No text annotation
Not in a motif group
homologous
IL_8C3A_023
IL_86319.2
IL_6Q8Y_1071/BQ/680:684,
1/BQ/696:700
No text annotation
Not in a motif group
homologous
IL_5TBW_022
IL_74284.1
IL_6Q8Y_1081/BQ/725:728,
1/BQ/741:745
No text annotation
Not in a motif group
homologous
IL_8C3A_025
IL_07235.1
IL_6Q8Y_1091/BQ/752:753,
1/BQ/779:781
Single bulged A
Not in a motif group
homologous
IL_5TBW_024
IL_37497.6
IL_6Q8Y_1101/BQ/755:756,
1/BQ/775:777
Single bulged U
Not in a motif group
homologous
IL_5TBW_025
IL_83039.16
IL_6Q8Y_1111/BQ/758:763,
1/BQ/768:773
No text annotation
Not in a motif group
geometric
IL_5TBW_026
IL_19954.2
IL_6Q8Y_1121/BQ/803:805,
1/BQ/938:940
No text annotation
Not in a motif group
geometric
IL_5TBW_027
IL_86319.2
IL_6Q8Y_1131/BQ/805:809,
1/BQ/931:938
No text annotation
Not in a motif group
homologous
IL_8C3A_030
IL_17470.6
IL_6Q8Y_1141/BQ/833:834,
1/BQ/859:861
Single bulged G
Not in a motif group
geometric
IL_4V9F_026
IL_00225.3
IL_6Q8Y_1151/BQ/834:838,
1/BQ/855:859
No text annotation
Not in a motif group
homologous
IL_8C3A_033
IL_56467.8
IL_6Q8Y_1161/BQ/869:872,
1/BQ/888:890
No text annotation
Not in a motif group
homologous
IL_8C3A_034
IL_05564.2
IL_6Q8Y_1171/BQ/873:875,
1/BQ/886:887
No text annotation
Not in a motif group
homologous
IL_8C3A_035
IL_83039.16
IL_6Q8Y_1181/BQ/907:909,
1/BQ/919:923
No text annotation
Not in a motif group
homologous
IL_8C3A_036
IL_90991.6
IL_6Q8Y_1191/BQ/954:956,
1/BQ/965:967
No text annotation
Not in a motif group
homologous
IL_5TBW_034
IL_86319.2
IL_6Q8Y_1201/BQ/969:970,
1/BQ/1111:1113
No text annotation
Not in a motif group
homologous
IL_8C3A_038
IL_76488.4
IL_6Q8Y_1211/BQ/977:982,
1/BQ/1101:1104
No text annotation
Not in a motif group
homologous
IL_8C3A_039
IL_59027.1
IL_6Q8Y_1221/BQ/983:985,
1/BQ/1099:1100
Single bulged G
Not in a motif group
homologous
IL_5TBW_037
IL_00225.3
IL_6Q8Y_1231/BQ/991:997,
1/BQ/1052:1058
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_5TBW_038
IL_93830.3
IL_6Q8Y_1241/BQ/997:998,
1/BQ/1050:1052
No text annotation
Not in a motif group
homologous
IL_8C3A_042
IL_42622.4
IL_6Q8Y_1251/BQ/999:1004,
1/BQ/1046:1049
C-loop
Not in a motif group
homologous
IL_5TBW_040
IL_02509.1
IL_6Q8Y_1261/BQ/1006:1009,
1/BQ/1041:1044
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5TBW_041
IL_30621.4
IL_6Q8Y_1271/BQ/1009:1011,
1/BQ/1039:1041
No text annotation
Not in a motif group
geometric
IL_5TBW_042
IL_86319.2
IL_6Q8Y_1281/BQ/1013:1018,
1/BQ/1034:1037
Other IL
Not in a motif group
homologous
IL_5TBW_043
IL_71110.1
IL_6Q8Y_1291/BQ/1069:1071,
1/BQ/1087:1089
No text annotation
Not in a motif group
homologous
IL_8C3A_047
IL_86319.2
IL_6Q8Y_1301/BQ/1074:1076,
1/BQ/1083:1084
Single bulged A
Not in a motif group
geometric
IL_5TBW_045
IL_37497.6
IL_6Q8Y_1311/BQ/1120:1122,
1/BQ/1136:1138
No text annotation
Not in a motif group
homologous
IL_5TBW_046
IL_86319.2
IL_6Q8Y_1321/BQ/1167:1171,
1/BQ/1328:1332
No text annotation
Not in a motif group
homologous
IL_8C3A_051
IL_89002.2
IL_6Q8Y_1331/BQ/1173:1180,
1/BQ/1325:1326
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5TBW_049
IL_15861.7
IL_6Q8Y_1341/BQ/1180:1182,
1/BQ/1324:1325
Single bulged U
Not in a motif group
geometric
IL_5TBW_050
IL_83039.16
IL_6Q8Y_1351/BQ/1187:1194,
1/BQ/1314:1319
No text annotation
Not in a motif group
homologous
IL_8C3A_054
IL_27086.1
IL_6Q8Y_1361/BQ/1194:1205,
1/BQ/1299:1314
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_53762.1
IL_6Q8Y_1371/BQ/1207:1209,
1/BQ/1296:1297
No text annotation
Not in a motif group
homologous
IL_8C3A_056
IL_83039.16
IL_6Q8Y_1381/BQ/1218:1226,
1/BQ/1283:1287
Kink-turn
Not in a motif group
homologous
IL_5TBW_054
IL_90538.4
IL_6Q8Y_1391/BQ/1262:1266,
1/BQ/1275:1277
No text annotation
Not in a motif group
geometric
IL_4V88_457
IL_86319.2
IL_6Q8Y_1401/BQ/1376:1378,
1/BQ/1428:1431
No text annotation
Not in a motif group
homologous
IL_8C3A_061
IL_52767.4
IL_6Q8Y_1411/BQ/1385:1387,
1/BQ/1420:1421
No text annotation
Not in a motif group
homologous
IL_8C3A_062
IL_37497.6
IL_6Q8Y_1421/BQ/1388:1395,
1/BQ/1415:1419
Kink-turn
Not in a motif group
homologous
IL_5TBW_059
IL_70923.2
IL_6Q8Y_1431/BQ/1398:1400,
1/BQ/1411:1412
Single bulged A
Not in a motif group
homologous
IL_5TBW_060
IL_37497.6