6Q8Y Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6Q8Y_001 | 1/2/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6Q8Y_002 | 1/2/70:81 | No text annotation Not in a motif group | ||
| HL_6Q8Y_003 | 1/2/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_6Q8Y_004 | 1/2/190:195 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6Q8Y_005 | 1/2/230:235 | No text annotation Not in a motif group | homologous HL_8C3A_196 HL_81440.1 | |
| HL_6Q8Y_006 | 1/2/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_6Q8Y_007 | 1/2/276:279 | No text annotation Not in a motif group | homologous HL_4V88_192 HL_53837.1 | |
| HL_6Q8Y_008 | 1/2/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_6Q8Y_009 | 1/2/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6Q8Y_010 | 1/2/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6Q8Y_011 | 1/2/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_6Q8Y_012 | 1/2/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6Q8Y_013 | 1/2/491:496 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6Q8Y_014 | 1/2/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_6Q8Y_015 | 1/2/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_6Q8Y_017 | 1/2/702:736 | No text annotation Not in a motif group | ||
| HL_6Q8Y_018 | 1/2/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_6Q8Y_019 | 1/2/777:783 | No text annotation Not in a motif group | ||
| HL_6Q8Y_020 | 1/2/828:844 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_6Q8Y_021 | 1/2/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_6Q8Y_022 | 1/2/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6Q8Y_023 | 1/2/997:1007 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_6Q8Y_024 | 1/2/1055:1064 | No text annotation Not in a motif group | ||
| HL_6Q8Y_025 | 1/2/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_6Q8Y_026 | 1/2/1121:1126 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_6Q8Y_027 | 1/2/1188:1197 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_6Q8Y_028 | 1/2/1238:1247 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_6Q8Y_029 | 1/2/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_6Q8Y_030 | 1/2/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_6Q8Y_031 | 1/2/1359:1364 | No text annotation Not in a motif group | homologous HL_4V88_216 HL_10278.1 | |
| HL_6Q8Y_032 | 1/2/1396:1402 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_6Q8Y_033 | 1/2/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_6Q8Y_034 | 1/2/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_6Q8Y_035 | 1/2/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_6Q8Y_037 | 1/2/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 | |
| HL_6Q8Y_038 | 1/BQ/38:45 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.2 | |
| HL_6Q8Y_039 | 1/BQ/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
| HL_6Q8Y_040 | 1/BQ/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_6Q8Y_041 | 1/BQ/132:136 | No text annotation Not in a motif group | homologous HL_8C3A_004 HL_98426.1 | |
| HL_6Q8Y_042 | 1/BQ/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_6Q8Y_043 | 1/BQ/208:212 | No text annotation Not in a motif group | homologous HL_8C3A_006 HL_98984.2 | |
| HL_6Q8Y_044 | 1/BQ/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_6Q8Y_045 | 1/BQ/278:287 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_6Q8Y_046 | 1/BQ/303:312 | No text annotation Not in a motif group | homologous HL_8C3A_009 HL_12078.2 | |
| HL_6Q8Y_047 | 1/BQ/357:362 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_6Q8Y_048 | 1/BQ/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.1 | |
| HL_6Q8Y_049 | 1/BQ/543:548 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
| HL_6Q8Y_050 | 1/BQ/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_6Q8Y_051 | 1/BQ/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_6Q8Y_052 | 1/BQ/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_6Q8Y_053 | 1/BQ/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_6Q8Y_054 | 1/BQ/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_6Q8Y_055 | 1/BQ/763:768 | No text annotation Not in a motif group | homologous HL_8C3A_018 HL_34168.2 | |
| HL_6Q8Y_056 | 1/BQ/844:849 | No text annotation Not in a motif group | homologous HL_8C3A_019 HL_42097.1 | |
| HL_6Q8Y_057 | 1/BQ/876:885 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.6 | |
| HL_6Q8Y_058 | 1/BQ/910:918 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_6Q8Y_059 | 1/BQ/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_6Q8Y_060 | 1/BQ/1023:1029 | GNRA Not in a motif group | homologous HL_5TBW_023 HL_42097.1 | |
| HL_6Q8Y_061 | 1/BQ/1076:1083 | No text annotation Not in a motif group | homologous HL_8C3A_024 HL_71554.2 | |
| HL_6Q8Y_062 | 1/BQ/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_6Q8Y_063 | 1/BQ/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_6Q8Y_064 | 1/BQ/1233:1255 | No text annotation Not in a motif group | ||
| HL_6Q8Y_065 | 1/BQ/1266:1275 | No text annotation Not in a motif group | ||
| HL_6Q8Y_067 | 1/BQ/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_6Q8Y_068 | 1/BQ/1462:1470 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_89380.2 | |
| HL_6Q8Y_069 | 1/BQ/1506:1512 | No text annotation Not in a motif group | homologous HL_8C3A_032 HL_46680.1 | |
| HL_6Q8Y_070 | 1/BQ/1544:1549 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_6Q8Y_072 | 1/BQ/1599:1608 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_6Q8Y_073 | 1/BQ/1634:1639 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_42097.1 | |
| HL_6Q8Y_074 | 1/BQ/1680:1688 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_60812.1 | |
| HL_6Q8Y_075 | 1/BQ/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.2 | |
| HL_6Q8Y_076 | 1/BQ/1760:1765 | Other HL Not in a motif group | homologous HL_5TBW_039 HL_56691.2 | |
| HL_6Q8Y_077 | 1/BQ/1792:1796 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_38927.2 | |
| HL_6Q8Y_078 | 1/BQ/1844:1851 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.2 | |
| HL_6Q8Y_079 | 1/BQ/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_6Q8Y_080 | 1/BQ/1923:1928 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_6Q8Y_082 | 1/BQ/2110:2114 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_6Q8Y_083 | 1/BQ/2135:2145 | No text annotation Not in a motif group | homologous HL_8C3A_046 HL_43613.5 | |
| HL_6Q8Y_084 | 1/BQ/2164:2170 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_6Q8Y_085 | 1/BQ/2220:2225 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_42097.1 | |
| HL_6Q8Y_086 | 1/BQ/2253:2263 | No text annotation Not in a motif group | homologous HL_8C3A_049 HL_71924.2 | |
| HL_6Q8Y_087 | 1/BQ/2292:2300 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.1 | |
| HL_6Q8Y_088 | 1/BQ/2369:2378 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_6Q8Y_090 | 1/BQ/2535:2544 | No text annotation Not in a motif group | ||
| HL_6Q8Y_091 | 1/BQ/2568:2573 | No text annotation Not in a motif group | ||
| HL_6Q8Y_092 | 1/BQ/2616:2624 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_6Q8Y_093 | 1/BQ/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_6Q8Y_094 | 1/BQ/2673:2681 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.4 | |
| HL_6Q8Y_095 | 1/BQ/2693:2700 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.2 | |
| HL_6Q8Y_096 | 1/BQ/2724:2732 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_6Q8Y_097 | 1/BQ/2744:2749 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.1 | |
| HL_6Q8Y_098 | 1/BQ/2776:2784 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.1 | |
| HL_6Q8Y_099 | 1/BQ/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_6Q8Y_100 | 1/BQ/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_6Q8Y_101 | 1/BQ/2920:2926 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_6Q8Y_102 | 1/BQ/2963:2968 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_42097.1 | |
| HL_6Q8Y_103 | 1/BQ/3025:3030 | No text annotation Not in a motif group | homologous HL_8C3A_066 HL_42097.1 | |
| HL_6Q8Y_104 | 1/BQ/3068:3073 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_46680.1 | |
| HL_6Q8Y_105 | 1/BQ/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_6Q8Y_106 | 1/BQ/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
| HL_6Q8Y_107 | 1/BQ/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_6Q8Y_108 | 1/BQ/3303:3311 | No text annotation Not in a motif group | homologous HL_8C3A_071 HL_27930.1 | |
| HL_6Q8Y_109 | 1/BQ/3350:3353 | No text annotation Not in a motif group | geometric HL_6JOO_002 HL_38927.2 | |
| HL_6Q8Y_110 | 1/BR/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_87939.1 | |
| HL_6Q8Y_111 | 1/BR/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_6Q8Y_112 | 1/BS/69:89 | No text annotation Not in a motif group | ||
| HL_6Q8Y_113 | 1/BS/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_6Q8Y_114 | 1/BS/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 | |
| HL_6Q8Y_115 | 1/m/12:23 | No text annotation Not in a motif group | homologous HL_1SER_001 NA | |
| HL_6Q8Y_116 | 1/m/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4V9Q_214 HL_53597.2 | |
| HL_6Q8Y_117 | 1/m/52:60 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_2BTE_004 HL_22280.1 | |
| HL_6Q8Y_118 | 1/n/12:23 | No text annotation Not in a motif group | homologous HL_1SER_001 NA | |
| HL_6Q8Y_119 | 1/n/31:39 | No text annotation Not in a motif group | homologous HL_6CFJ_107 NA | |
| HL_6Q8Y_120 | 1/n/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_6PMO_005 HL_22280.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6Q8Y_016 | No text annotation | ||
| HL_6Q8Y_036 | No text annotation | ||
| HL_6Q8Y_066 | No text annotation | ||
| HL_6Q8Y_071 | No text annotation | ||
| HL_6Q8Y_081 | No text annotation | ||
| HL_6Q8Y_089 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6Q8Y_001 | 1/2/24:26, 1/2/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_6Q8Y_002 | 1/2/35:37, 1/2/471:473 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_6Q8Y_003 | 1/2/37:41, 1/2/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_6Q8Y_004 | 1/2/42:48, 1/2/431:433 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_6Q8Y_005 | 1/2/48:53, 1/2/427:431 | No text annotation Not in a motif group | ||
| IL_6Q8Y_006 | 1/2/58:63, 1/2/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6Q8Y_007 | 1/2/64:69, 1/2/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_6Q8Y_008 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_6Q8Y_009 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_6Q8Y_010 | 1/2/117:122, 1/2/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6Q8Y_011 | 1/2/144:149, 1/2/165:171 | tWH-tWH-tHW-tHW Not in a motif group | geometric IL_4LFB_009 IL_39753.1 | |
| IL_6Q8Y_012 | 1/2/150:152, 1/2/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_3W3S_003 IL_51629.2 | |
| IL_6Q8Y_013 | 1/2/186:190, 1/2/195:199 | Triple sheared Not in a motif group | geometric IL_5J7L_274 IL_56467.8 | |
| IL_6Q8Y_014 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_05564.2 | |
| IL_6Q8Y_015 | 1/2/206:208, 1/2/257:259 | No text annotation Not in a motif group | geometric IL_4V88_398 IL_95997.1 | |
| IL_6Q8Y_016 | 1/2/265:267, 1/2/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6Q8Y_017 | 1/2/270:273, 1/2/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_6Q8Y_018 | 1/2/275:276, 1/2/279:281 | Single bulged U Not in a motif group | geometric IL_4V88_401 IL_83039.13 | |
| IL_6Q8Y_019 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6Q8Y_020 | 1/2/318:323, 1/2/345:346 | No text annotation Not in a motif group | homologous IL_4V88_403 IL_48100.2 | |
| IL_6Q8Y_021 | 1/2/363:365, 1/2/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6Q8Y_022 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6Q8Y_023 | 1/2/411:413, 1/2/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_6Q8Y_024 | 1/2/439:441, 1/2/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_6Q8Y_025 | 1/2/443:447, 1/2/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6Q8Y_026 | 1/2/447:448, 1/2/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6Q8Y_027 | 1/2/481:482, 1/2/505:507 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.2 | |
| IL_6Q8Y_028 | 1/2/514:516, 1/2/536:543 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 IL_38958.7 | |
| IL_6Q8Y_029 | 1/2/517:518, 1/2/533:535 | Minor groove platform Not in a motif group | geometric IL_4LFB_004 IL_93353.1 | |
| IL_6Q8Y_030 | 1/2/518:520, 1/2/532:533 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_6Q8Y_031 | 1/2/550:557, 1/2/587:588 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4V88_413 IL_15861.7 | |
| IL_6Q8Y_032 | 1/2/557:559, 1/2/586:587 | Single bulged U Not in a motif group | geometric IL_6UFG_004 IL_83039.13 | |
| IL_6Q8Y_033 | 1/2/562:568, 1/2/575:583 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_6Q8Y_034 | 1/2/616:622, 1/2/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_6Q8Y_035 | 1/2/624:626, 1/2/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6Q8Y_036 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6Q8Y_037 | 1/2/646:648, 1/2/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_95997.1 | |
| IL_6Q8Y_038 | 1/2/746:747, 1/2/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_6Q8Y_039 | 1/2/748:750, 1/2/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_6Q8Y_040 | 1/2/751:759, 1/2/791:798 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_6Q8Y_041 | 1/2/817:822, 1/2/850:854 | No text annotation Not in a motif group | ||
| IL_6Q8Y_042 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_6Q8Y_043 | 1/2/868:870, 1/2/957:960 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_6Q8Y_044 | 1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_6Q8Y_045 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_6Q8Y_046 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_6Q8Y_047 | 1/2/893:899, 1/2/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_6Q8Y_048 | 1/2/985:990, 1/2/1014:1016 | Other IL Not in a motif group | homologous IL_4V88_435 IL_22046.1 | |
| IL_6Q8Y_050 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6Q8Y_051 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_6Q8Y_052 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_6Q8Y_053 | 1/2/1111:1118, 1/2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_6Q8Y_054 | 1/2/1146:1147, 1/2/1630:1632 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_6Q8Y_055 | 1/2/1149:1151, 1/2/1627:1628 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_6Q8Y_056 | 1/2/1157:1160, 1/2/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6Q8Y_057 | 1/2/1173:1175, 1/2/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_6Q8Y_058 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6Q8Y_059 | 1/2/1213:1215, 1/2/1448:1450 | No text annotation Not in a motif group | homologous IL_4V88_446 IL_95997.1 | |
| IL_6Q8Y_060 | 1/2/1224:1230, 1/2/1257:1259 | No text annotation Not in a motif group | ||
| IL_6Q8Y_061 | 1/2/1230:1233, 1/2/1252:1257 | No text annotation Not in a motif group | ||
| IL_6Q8Y_062 | 1/2/1234:1236, 1/2/1249:1251 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_6Q8Y_063 | 1/2/1268:1270, 1/2/1440:1441 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_6Q8Y_064 | 1/2/1272:1276, 1/2/1436:1438 | Isolated cWS basepair Not in a motif group | geometric IL_4V88_450 IL_76319.2 | |
| IL_6Q8Y_065 | 1/2/1276:1278, 1/2/1430:1436 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_6Q8Y_066 | 1/2/1280:1281, 1/2/1426:1428 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_6Q8Y_067 | 1/2/1290:1292, 1/2/1323:1325 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_6Q8Y_068 | 1/2/1306:1308, 1/2/1317:1318 | Minor groove platform Not in a motif group | geometric IL_4LFB_004 IL_93353.1 | |
| IL_6Q8Y_069 | 1/2/1339:1342, 1/2/1383:1385 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_6Q8Y_070 | 1/2/1345:1348, 1/2/1377:1380 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_6Q8Y_071 | 1/2/1352:1354, 1/2/1369:1373 | No text annotation Not in a motif group | homologous IL_4V88_457 IL_95997.1 | |
| IL_6Q8Y_072 | 1/2/1389:1391, 1/2/1407:1412 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_458 IL_58032.1 | |
| IL_6Q8Y_073 | 1/2/1488:1494, 1/2/1513:1518 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_6Q8Y_074 | 1/2/1495:1498, 1/2/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_6Q8Y_075 | 1/2/1636:1638, 1/2/1764:1767 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_6Q8Y_076 | 1/2/1638:1641, 1/2/1760:1764 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6Q8Y_077 | 1/2/1642:1644, 1/2/1757:1759 | No text annotation Not in a motif group | homologous IL_4V88_465 IL_95997.1 | |
| IL_6Q8Y_078 | 1/2/1644:1647, 1/2/1753:1757 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.2 | |
| IL_6Q8Y_079 | 1/2/1650:1652, 1/2/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6Q8Y_080 | 1/2/1653:1656, 1/2/1744:1747 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_6Q8Y_081 | 1/2/1656:1658, 1/2/1743:1744 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.13 | |
| IL_6Q8Y_082 | 1/2/1665:1667, 1/2/1734:1736 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_6Q8Y_083 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_6Q8Y_084 | 1/2/1672:1674, 1/2/1727:1729 | No text annotation Not in a motif group | geometric IL_3HHN_004 IL_95997.1 | |
| IL_6Q8Y_085 | 1/2/1675:1678, 1/2/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_473 IL_30621.2 | |
| IL_6Q8Y_086 | 1/2/1678:1682, 1/2/1719:1723 | Triple sheared Not in a motif group | geometric IL_4V88_474 IL_56467.8 | |
| IL_6Q8Y_087 | 1/BQ/7:8, 1/BS/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_6Q8Y_088 | 1/BQ/13:15, 1/BS/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_6Q8Y_089 | 1/BQ/27:28, 1/BQ/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_6Q8Y_090 | 1/BQ/31:38, 1/BQ/45:53 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
| IL_6Q8Y_091 | 1/BQ/82:89, 1/BQ/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_6Q8Y_092 | 1/BQ/123:124, 1/BQ/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_6Q8Y_093 | 1/BQ/125:127, 1/BQ/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_6Q8Y_094 | 1/BQ/163:165, 1/BQ/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_6Q8Y_095 | 1/BQ/169:170, 1/BQ/248:253 | No text annotation Not in a motif group | homologous IL_5TBW_010 IL_74684.1 | |
| IL_6Q8Y_096 | 1/BQ/177:178, 1/BQ/238:241 | No text annotation Not in a motif group | homologous IL_8C3A_012 IL_76488.2 | |
| IL_6Q8Y_097 | 1/BQ/189:191, 1/BQ/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_6Q8Y_098 | 1/BQ/337:339, 1/BS/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_6Q8Y_099 | 1/BQ/376:379, 1/BQ/390:403 | No text annotation Not in a motif group | homologous IL_8C3A_015 IL_60992.6 | |
| IL_6Q8Y_100 | 1/BQ/404:410, 1/BS/13:19 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5TBW_015 IL_66414.6 | |
| IL_6Q8Y_101 | 1/BQ/429:431, 1/BQ/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_6Q8Y_103 | 1/BQ/512:513, 1/BQ/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.2 | |
| IL_6Q8Y_104 | 1/BQ/517:525, 1/BQ/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_6Q8Y_105 | 1/BQ/531:538, 1/BQ/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_6Q8Y_106 | 1/BQ/668:670, 1/BQ/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_6Q8Y_107 | 1/BQ/680:684, 1/BQ/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_6Q8Y_108 | 1/BQ/725:728, 1/BQ/741:745 | No text annotation Not in a motif group | homologous IL_8C3A_025 IL_07235.1 | |
| IL_6Q8Y_109 | 1/BQ/752:753, 1/BQ/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.2 | |
| IL_6Q8Y_110 | 1/BQ/755:756, 1/BQ/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.13 | |
| IL_6Q8Y_111 | 1/BQ/758:763, 1/BQ/768:773 | No text annotation Not in a motif group | geometric IL_5TBW_026 IL_19954.2 | |
| IL_6Q8Y_112 | 1/BQ/803:805, 1/BQ/938:940 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_95997.1 | |
| IL_6Q8Y_113 | 1/BQ/805:809, 1/BQ/931:938 | No text annotation Not in a motif group | homologous IL_8C3A_030 IL_17470.6 | |
| IL_6Q8Y_114 | 1/BQ/833:834, 1/BQ/859:861 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
| IL_6Q8Y_115 | 1/BQ/834:838, 1/BQ/855:859 | No text annotation Not in a motif group | homologous IL_8C3A_033 IL_56467.8 | |
| IL_6Q8Y_116 | 1/BQ/869:872, 1/BQ/888:890 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_6Q8Y_117 | 1/BQ/873:875, 1/BQ/886:887 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_6Q8Y_118 | 1/BQ/907:909, 1/BQ/919:923 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_6Q8Y_119 | 1/BQ/954:956, 1/BQ/965:967 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_95997.1 | |
| IL_6Q8Y_120 | 1/BQ/969:970, 1/BQ/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_6Q8Y_121 | 1/BQ/977:982, 1/BQ/1101:1104 | No text annotation Not in a motif group | homologous IL_8C3A_039 IL_59027.1 | |
| IL_6Q8Y_122 | 1/BQ/983:985, 1/BQ/1099:1100 | Single bulged G Not in a motif group | homologous IL_5TBW_037 IL_00225.2 | |
| IL_6Q8Y_123 | 1/BQ/991:997, 1/BQ/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5TBW_038 IL_93830.3 | |
| IL_6Q8Y_124 | 1/BQ/997:998, 1/BQ/1050:1052 | No text annotation Not in a motif group | homologous IL_8C3A_042 IL_42622.2 | |
| IL_6Q8Y_125 | 1/BQ/999:1004, 1/BQ/1046:1049 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_02509.1 | |
| IL_6Q8Y_126 | 1/BQ/1006:1009, 1/BQ/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_041 IL_30621.2 | |
| IL_6Q8Y_127 | 1/BQ/1009:1011, 1/BQ/1039:1041 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_6Q8Y_128 | 1/BQ/1013:1018, 1/BQ/1034:1037 | Other IL Not in a motif group | homologous IL_5TBW_043 IL_71110.1 | |
| IL_6Q8Y_129 | 1/BQ/1069:1071, 1/BQ/1087:1089 | No text annotation Not in a motif group | homologous IL_8C3A_047 IL_95997.1 | |
| IL_6Q8Y_130 | 1/BQ/1074:1076, 1/BQ/1083:1084 | Single bulged A Not in a motif group | geometric IL_5TBW_045 IL_37497.2 | |
| IL_6Q8Y_131 | 1/BQ/1120:1122, 1/BQ/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_6Q8Y_132 | 1/BQ/1167:1171, 1/BQ/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_6Q8Y_133 | 1/BQ/1173:1180, 1/BQ/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.7 | |
| IL_6Q8Y_134 | 1/BQ/1180:1182, 1/BQ/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.13 | |
| IL_6Q8Y_135 | 1/BQ/1187:1194, 1/BQ/1314:1319 | No text annotation Not in a motif group | homologous IL_8C3A_054 IL_27086.1 | |
| IL_6Q8Y_136 | 1/BQ/1194:1205, 1/BQ/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_6Q8Y_137 | 1/BQ/1207:1209, 1/BQ/1296:1297 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.13 | |
| IL_6Q8Y_138 | 1/BQ/1218:1226, 1/BQ/1283:1287 | Kink-turn Not in a motif group | homologous IL_5TBW_054 IL_90538.4 | |
| IL_6Q8Y_139 | 1/BQ/1262:1266, 1/BQ/1275:1277 | No text annotation Not in a motif group | geometric IL_4V88_457 IL_95997.1 | |
| IL_6Q8Y_140 | 1/BQ/1376:1378, 1/BQ/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_6Q8Y_141 | 1/BQ/1385:1387, 1/BQ/1420:1421 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_6Q8Y_142 | 1/BQ/1388:1395, 1/BQ/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_6Q8Y_143 | 1/BQ/1398:1400, 1/BQ/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_6Q8Y_144 | 1/BQ/1444:1450, 1/BQ/2354:2359 | No text annotation Not in a motif group | homologous IL_8C3A_065 IL_76042.2 | |
| IL_6Q8Y_145 | 1/BQ/1500:1505, 1/BQ/1513:1516 | No text annotation Not in a motif group | homologous IL_8C3A_066 IL_93630.2 | |
| IL_6Q8Y_146 | 1/BQ/1532:1536, 1/BQ/1585:1590 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_6Q8Y_147 | 1/BQ/1561:1563, 1/BQ/1577:1578 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_6Q8Y_149 | 1/BQ/1618:1621, 1/BQ/1824:1826 | No text annotation Not in a motif group | homologous IL_8C3A_070 IL_84698.1 | |
| IL_6Q8Y_150 | 1/BQ/1623:1624, 1/BQ/1819:1822 | Multiple bulged bases Not in a motif group | geometric IL_4V9F_021 IL_76389.1 | |
| IL_6Q8Y_151 | 1/BQ/1627:1631, 1/BQ/1811:1816 | No text annotation Not in a motif group | homologous IL_8C3A_072 IL_48431.1 | |
| IL_6Q8Y_152 | 1/BQ/1645:1649, 1/BQ/1806:1810 | No text annotation Not in a motif group | homologous IL_8C3A_073 IL_56467.8 | |
| IL_6Q8Y_153 | 1/BQ/1661:1663, 1/BQ/1786:1788 | No text annotation Not in a motif group | homologous IL_8C3A_074 IL_95997.1 | |
| IL_6Q8Y_154 | 1/BQ/1669:1670, 1/BQ/1778:1780 | Single bulged C Not in a motif group | geometric IL_5TBW_069 IL_61258.12 | |
| IL_6Q8Y_155 | 1/BQ/1670:1671, 1/BQ/1776:1778 | Single stack bend Not in a motif group | homologous IL_5TBW_070 IL_76488.2 | |
| IL_6Q8Y_156 | 1/BQ/1694:1698, 1/BQ/1747:1752 | No text annotation Not in a motif group | homologous IL_8C3A_077 IL_69313.1 | |
| IL_6Q8Y_157 | 1/BQ/1702:1707, 1/BQ/1737:1743 | No text annotation Not in a motif group | homologous IL_5TBW_072 IL_39753.1 | |
| IL_6Q8Y_158 | 1/BQ/1711:1717, 1/BQ/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_6Q8Y_159 | 1/BQ/1883:1889, 1/BQ/2346:2349 | No text annotation Not in a motif group | homologous IL_8C3A_080 IL_49460.2 | |
| IL_6Q8Y_160 | 1/BQ/1895:1897, 1/BQ/2338:2340 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_6Q8Y_161 | 1/BQ/1898:1901, 1/BQ/2336:2337 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_6Q8Y_162 | 1/BQ/1901:1906, 1/BQ/2333:2336 | No text annotation Not in a motif group | homologous IL_8C3A_083 IL_82842.2 | |
| IL_6Q8Y_163 | 1/BQ/1918:1923, 1/BQ/1928:1934 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_6Q8Y_164 | 1/BQ/1940:1942, 1/BQ/2106:2108 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_6Q8Y_165 | 1/BQ/1947:1948, 1/BQ/2098:2101 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_6Q8Y_166 | 1/BQ/2128:2129, 1/BQ/2323:2325 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_6Q8Y_167 | 1/BQ/2156:2161, 1/BQ/2173:2180 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_6Q8Y_168 | 1/BQ/2196:2199, 1/BQ/2245:2246 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_6Q8Y_169 | 1/BQ/2200:2202, 1/BQ/2240:2244 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_82068.2 | |
| IL_6Q8Y_170 | 1/BQ/2204:2206, 1/BQ/2237:2238 | Single bulged U Not in a motif group | geometric IL_5TBW_086 IL_83039.13 | |
| IL_6Q8Y_171 | 1/BQ/2206:2210, 1/BQ/2235:2237 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_087 IL_63450.2 | |
| IL_6Q8Y_172 | 1/BQ/2211:2217, 1/BQ/2228:2234 | No text annotation Not in a motif group | homologous IL_8C3A_093 IL_36973.6 | |
| IL_6Q8Y_173 | 1/BQ/2276:2277, 1/BQ/2307:2310 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_089 IL_59677.2 | |
| IL_6Q8Y_174 | 1/BQ/2277:2288, 1/BQ/2304:2307 | No text annotation Not in a motif group | homologous IL_8C3A_095 IL_81589.2 | |
| IL_6Q8Y_175 | 1/BQ/2391:2394, 1/BQ/2986:2988 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_6Q8Y_176 | 1/BQ/2396:2398, 1/BQ/2981:2984 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_54678.5 | |
| IL_6Q8Y_177 | 1/BQ/2409:2411, 1/BQ/2811:2812 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.13 | |
| IL_6Q8Y_178 | 1/BQ/2412:2413, 1/BQ/2807:2810 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_6Q8Y_179 | 1/BQ/2423:2425, 1/BQ/2604:2607 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_6Q8Y_181 | 1/BQ/2520:2526, 1/BQ/2584:2587 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_6Q8Y_182 | 1/BQ/2614:2615, 1/BQ/2625:2627 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.2 | |
| IL_6Q8Y_183 | 1/BQ/2666:2668, 1/BQ/2686:2690 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.7 | |
| IL_6Q8Y_184 | 1/BQ/2718:2721, 1/BQ/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.2 | |
| IL_6Q8Y_185 | 1/BQ/2770:2773, 1/BQ/2787:2788 | No text annotation Not in a motif group | homologous IL_8C3A_110 IL_76488.2 | |
| IL_6Q8Y_186 | 1/BQ/2823:2824, 1/BQ/2865:2867 | Major groove platform Not in a motif group | homologous IL_5TBW_102 IL_27635.1 | |
| IL_6Q8Y_187 | 1/BQ/2824:2826, 1/BQ/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_6Q8Y_188 | 1/BQ/2826:2828, 1/BQ/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_6Q8Y_189 | 1/BQ/2828:2830, 1/BQ/2858:2862 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_92788.2 | |
| IL_6Q8Y_190 | 1/BQ/2835:2839, 1/BQ/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_6Q8Y_191 | 1/BQ/2876:2877, 1/BQ/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_6Q8Y_192 | 1/BQ/2879:2881, 1/BQ/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_6Q8Y_193 | 1/BQ/2881:2882, 1/BQ/2940:2943 | No text annotation Not in a motif group | homologous IL_8C3A_117 IL_71530.2 | |
| IL_6Q8Y_194 | 1/BQ/2889:2891, 1/BQ/2912:2914 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_6Q8Y_195 | 1/BQ/2891:2892, 1/BQ/2909:2912 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_111 IL_95601.3 | |
| IL_6Q8Y_196 | 1/BQ/2918:2920, 1/BQ/2926:2928 | No text annotation Not in a motif group | homologous IL_8C3A_120 IL_95997.1 | |
| IL_6Q8Y_197 | 1/BQ/2960:2961, 1/BQ/2970:2972 | Single bulged A Not in a motif group | geometric IL_7RQB_101 IL_37497.2 | |
| IL_6Q8Y_198 | 1/BQ/3004:3007, 1/BQ/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_6Q8Y_199 | 1/BQ/3012:3014, 1/BQ/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_6Q8Y_200 | 1/BQ/3018:3025, 1/BQ/3030:3036 | No text annotation Not in a motif group | homologous IL_8C3A_125 IL_04346.7 | |
| IL_6Q8Y_201 | 1/BQ/3046:3051, 1/BQ/3091:3095 | No text annotation Not in a motif group | ||
| IL_6Q8Y_202 | 1/BQ/3054:3059, 1/BQ/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_6Q8Y_203 | 1/BQ/3063:3064, 1/BQ/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.2 | |
| IL_6Q8Y_204 | 1/BQ/3103:3107, 1/BQ/3127:3131 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.2 | |
| IL_6Q8Y_205 | 1/BQ/3164:3166, 1/BQ/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_6Q8Y_206 | 1/BQ/3168:3170, 1/BQ/3280:3282 | No text annotation Not in a motif group | homologous IL_5TBW_122 IL_95997.1 | |
| IL_6Q8Y_207 | 1/BQ/3177:3179, 1/BQ/3210:3211 | Single bulged A Not in a motif group | homologous IL_5TBW_123 IL_37497.2 | |
| IL_6Q8Y_208 | 1/BQ/3179:3188, 1/BQ/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_6Q8Y_209 | 1/BQ/3193:3194, 1/BQ/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_6Q8Y_210 | 1/BQ/3225:3229, 1/BQ/3258:3260 | No text annotation Not in a motif group | homologous IL_8C3A_133 IL_19389.6 | |
| IL_6Q8Y_211 | 1/BQ/3233:3235, 1/BQ/3252:3254 | No text annotation Not in a motif group | homologous IL_5TBW_127 IL_95997.1 | |
| IL_6Q8Y_212 | 1/BQ/3235:3238, 1/BQ/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6MWN_005 IL_30621.2 | |
| IL_6Q8Y_213 | 1/BQ/3300:3303, 1/BQ/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.2 | |
| IL_6Q8Y_214 | 1/BQ/3318:3320, 1/BQ/3387:3388 | Single bulged U Not in a motif group | geometric IL_5J7L_298 IL_83039.13 | |
| IL_6Q8Y_215 | 1/BQ/3324:3325, 1/BQ/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_6Q8Y_216 | 1/BQ/3328:3330, 1/BQ/3373:3378 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_6Q8Y_217 | 1/BQ/3332:3337, 1/BQ/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.5 | |
| IL_6Q8Y_218 | 1/BQ/3340:3342, 1/BQ/3363:3364 | No text annotation Not in a motif group | homologous IL_8C3A_140 IL_83039.13 | |
| IL_6Q8Y_219 | 1/BQ/3342:3345, 1/BQ/3360:3363 | Double sheared Not in a motif group | geometric IL_4V9F_100 IL_09705.9 | |
| IL_6Q8Y_220 | 1/BQ/3349:3350, 1/BQ/3353:3356 | No text annotation Not in a motif group | homologous IL_8C3A_142 IL_59677.2 | |
| IL_6Q8Y_221 | 1/BR/15:16, 1/BR/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_6Q8Y_222 | 1/BR/21:27, 1/BR/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_6Q8Y_223 | 1/BR/28:29, 1/BR/49:52 | Minor groove platform Not in a motif group | homologous IL_5TBW_374 IL_63797.2 | |
| IL_6Q8Y_224 | 1/BR/29:30, 1/BR/47:49 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_76488.2 | |
| IL_6Q8Y_225 | 1/BR/32:36, 1/BR/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.6 | |
| IL_6Q8Y_226 | 1/BR/72:80, 1/BR/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_6Q8Y_227 | 1/BR/84:87, 1/BR/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_6Q8Y_228 | 1/BS/44:64, 1/BS/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_6Q8Y_229 | 1/BS/64:66, 1/BS/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_6Q8Y_230 | 1/BS/68:69, 1/BS/89:91 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.13 | |
| IL_6Q8Y_231 | 1/m/10:12, 1/m/23:25 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6Q8Y_049 | tSH-tHW-tHS | ||
| IL_6Q8Y_102 | No text annotation | ||
| IL_6Q8Y_148 | No text annotation | ||
| IL_6Q8Y_180 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6Q8Y_001 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation Not in a motif group | ||
| J3_6Q8Y_002 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation Not in a motif group | ||
| J3_6Q8Y_003 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_6Q8Y_004 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6Q8Y_005 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_6Q8Y_006 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_6Q8Y_007 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_6Q8Y_008 | 1/2/1180:1187, 1/2/1198:1209, 1/2/1454:1458 | No text annotation Not in a motif group | ||
| J3_6Q8Y_009 | 1/2/1215:1220, 1/2/1263:1267, 1/2/1442:1448 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_6Q8Y_010 | 1/2/1283:1288, 1/2/1327:1332, 1/2/1419:1424 | No text annotation Not in a motif group | ||
| J3_6Q8Y_011 | 1/2/1293:1294, 1/2/1303:1306, 1/2/1318:1322 | No text annotation Not in a motif group | ||
| J3_6Q8Y_012 | 1/2/1336:1338, 1/2/1386:1389, 1/2/1412:1415 | No text annotation Not in a motif group | homologous J3_4V88_040 NA | |
| J3_6Q8Y_013 | 1/2/1470:1474, 1/2/1533:1545, 1/2/1566:1574 | No text annotation Not in a motif group | ||
| J3_6Q8Y_014 | 1/BQ/113:123, 1/BQ/149:158, 1/BQ/263:267 | No text annotation Not in a motif group | ||
| J3_6Q8Y_015 | 1/BQ/369:376, 1/BQ/403:404, 1/BS/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_6Q8Y_016 | 1/BQ/502:503, 1/BQ/588:597, 1/BQ/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_6Q8Y_017 | 1/BQ/814:820, 1/BQ/905:907, 1/BQ/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_6Q8Y_018 | 1/BQ/828:831, 1/BQ/863:867, 1/BQ/892:897 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_6Q8Y_019 | 1/BQ/986:987, 1/BQ/1062:1066, 1/BQ/1092:1098 | No text annotation Not in a motif group | homologous J3_5TBW_006 NA | |
| J3_6Q8Y_020 | 1/BQ/1230:1232, 1/BQ/1256:1262, 1/BQ/1277:1279 | No text annotation Not in a motif group | homologous J3_8C3A_005 NA | |
| J3_6Q8Y_021 | 1/BQ/1479:1485, 1/BQ/1857:1859, 1/BQ/1871:1874 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_6Q8Y_022 | 1/BQ/1488:1491, 1/BQ/1837:1843, 1/BQ/1852:1854 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_6Q8Y_023 | 1/BQ/1526:1531, 1/BQ/1591:1595, 1/BQ/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_6Q8Y_024 | 1/BQ/1631:1632, 1/BQ/1641:1645, 1/BQ/1810:1811 | No text annotation Not in a motif group | ||
| J3_6Q8Y_025 | 1/BQ/2432:2435, 1/BQ/2512:2517, 1/BQ/2590:2597 | No text annotation Not in a motif group | homologous J3_8C3A_008 NA | |
| J3_6Q8Y_026 | 1/BQ/2529:2532, 1/BQ/2547:2563, 1/BQ/2578:2581 | No text annotation Not in a motif group | ||
| J3_6Q8Y_027 | 1/BQ/2664:2666, 1/BQ/2690:2692, 1/BQ/2701:2706 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_6Q8Y_028 | 1/BQ/2886:2889, 1/BQ/2914:2916, 1/BQ/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_6Q8Y_029 | 1/BQ/3298:3300, 1/BQ/3314:3318, 1/BQ/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_6Q8Y_030 | 1/BR/9:14, 1/BR/66:67, 1/BR/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA |
Problematic loops
No problematic loops
Coloring options: