Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6SNT_0011/1/38:45No text annotation
Not in a motif group
geometric
HL_5TBW_001
HL_06192.2
HL_6SNT_0021/1/69:74No text annotation
Not in a motif group
homologous
HL_5TBW_002
HL_02862.2
HL_6SNT_0031/1/90:96No text annotation
Not in a motif group
homologous
HL_5TBW_003
HL_67216.7
HL_6SNT_0041/1/132:136No text annotation
Not in a motif group
homologous
HL_8C3A_004
HL_98426.1
HL_6SNT_0051/1/194:201No text annotation
Not in a motif group
homologous
HL_8C3A_005
HL_89380.2
HL_6SNT_0061/1/208:212No text annotation
Not in a motif group
homologous
HL_5TBW_006
HL_98984.2
HL_6SNT_0071/1/216:224No text annotation
Not in a motif group
homologous
HL_5TBW_007
HL_08002.8
HL_6SNT_0081/1/278:287No text annotation
Not in a motif group
homologous
HL_5TBW_008
HL_71554.2
HL_6SNT_0101/1/357:362Other HL
Not in a motif group
homologous
HL_5TBW_010
HL_42097.1
HL_6SNT_0111/1/382:387No text annotation
Not in a motif group
homologous
HL_8C3A_011
HL_42097.1
HL_6SNT_0121/1/543:548No text annotation
Not in a motif group
homologous
HL_5TBW_012
HL_86373.2
HL_6SNT_0131/1/599:604GNRA
Not in a motif group
homologous
HL_5TBW_013
HL_42097.1
HL_6SNT_0141/1/640:649No text annotation
Not in a motif group
homologous
HL_8C3A_014
HL_89380.2
HL_6SNT_0151/1/686:694No text annotation
Not in a motif group
homologous
HL_8C3A_015
HL_03345.1
HL_6SNT_0161/1/707:712No text annotation
Not in a motif group
homologous
HL_8C3A_016
HL_42097.1
HL_6SNT_0171/1/732:737GNRA
Not in a motif group
homologous
HL_5TBW_017
HL_42097.1
HL_6SNT_0221/1/958:963No text annotation
Not in a motif group
homologous
HL_8C3A_022
HL_96598.1
HL_6SNT_0251/1/1126:1132No text annotation
Not in a motif group
homologous
HL_8C3A_025
HL_42097.1
HL_6SNT_0261/1/1148:1155No text annotation
Not in a motif group
homologous
HL_8C3A_026
HL_64430.2
HL_6SNT_0301/1/1403:1408No text annotation
Not in a motif group
homologous
HL_8C3A_030
HL_42097.1
HL_6SNT_0621/1/2840:2848No text annotation
Not in a motif group
homologous
HL_5TBW_061
HL_06192.2
HL_6SNT_0631/1/2897:2904No text annotation
Not in a motif group
homologous
HL_5TBW_062
HL_88526.2
HL_6SNT_0641/1/2920:2926No text annotation
Not in a motif group
homologous
HL_8C3A_064
HL_43656.2
HL_6SNT_0661/1/3025:3030No text annotation
Not in a motif group
homologous
HL_8C3A_066
HL_42097.1
HL_6SNT_0671/1/3068:3073No text annotation
Not in a motif group
homologous
HL_8C3A_067
HL_46680.1
HL_6SNT_0681/1/3110:3124No text annotation
Not in a motif group
homologous
HL_8C3A_068
HL_56677.7
HL_6SNT_0691/1/3194:3197No text annotation
Not in a motif group
homologous
HL_5TBW_068
HL_98426.1
HL_6SNT_0701/1/3240:3247No text annotation
Not in a motif group
homologous
HL_5TBW_069
HL_14449.2
HL_6SNT_0711/1/3303:3311No text annotation
Not in a motif group
homologous
HL_8C3A_071
HL_27930.1
HL_6SNT_0721/1/3349:3356No text annotation
Not in a motif group
HL_6SNT_0741/2/70:81No text annotation
Not in a motif group
HL_6SNT_0751/2/154:160Other HL
Not in a motif group
homologous
HL_4V88_188
HL_76539.2
HL_6SNT_0761/2/190:195No text annotation
Not in a motif group
geometric
HL_4V88_198
HL_56691.2
HL_6SNT_0781/2/243:250T-loop with 1 bulged base
Not in a motif group
homologous
HL_4V88_191
HL_27930.1
HL_6SNT_0791/2/276:279No text annotation
Not in a motif group
homologous
HL_4V88_192
HL_53837.1
HL_6SNT_0801/2/330:338No text annotation
Not in a motif group
homologous
HL_4V88_193
HL_69023.2
HL_6SNT_0811/2/368:373No text annotation
Not in a motif group
homologous
HL_4V88_194
HL_50142.2
HL_6SNT_0821/2/393:404No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_6SNT_0831/2/414:419UNCG
Not in a motif group
homologous
HL_4V88_196
HL_03562.2
HL_6SNT_0841/2/450:456No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_09136.1
HL_6SNT_0861/2/520:532No text annotation
Not in a motif group
geometric
HL_4V88_199
HL_06285.2
HL_6SNT_0941/2/937:942Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_6SNT_0961/2/1055:1064No text annotation
Not in a motif group
HL_6SNT_0971/2/1084:1089Other HL
Not in a motif group
homologous
HL_4V88_210
HL_42097.1
HL_6SNT_1071/2/1594:1602No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_60812.1
HL_6SNT_1101/3/69:89No text annotation
Not in a motif group
HL_6SNT_1111/3/108:114No text annotation
Not in a motif group
homologous
HL_5TBW_075
HL_87939.1
HL_6SNT_1121/3/124:129No text annotation
Not in a motif group
homologous
HL_5TBW_076
HL_96851.2
HL_6SNT_1131/4/36:41No text annotation
Not in a motif group
homologous
HL_5TBW_185
HL_87939.1
HL_6SNT_1141/4/88:93GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_42097.1
HL_6SNT_1151/6/12:23No text annotation
Not in a motif group
homologous
HL_1SER_001
NA
HL_6SNT_1161/6/31:39No text annotation
Not in a motif group
HL_6SNT_1171/6/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_6PMO_005
HL_22280.1

Problematic loops

#loop idProblemSequence
HL_6SNT_009No text annotation
HL_6SNT_018No text annotation
HL_6SNT_019No text annotation
HL_6SNT_020No text annotation
HL_6SNT_021No text annotation
HL_6SNT_023No text annotation
HL_6SNT_024No text annotation
HL_6SNT_027No text annotation
HL_6SNT_028No text annotation
HL_6SNT_029No text annotation
HL_6SNT_031No text annotation
HL_6SNT_032No text annotation
HL_6SNT_033No text annotation
HL_6SNT_034No text annotation
HL_6SNT_035No text annotation
HL_6SNT_036No text annotation
HL_6SNT_037No text annotation
HL_6SNT_038No text annotation
HL_6SNT_039No text annotation
HL_6SNT_040No text annotation
HL_6SNT_041No text annotation
HL_6SNT_042GNRA with one bulged base
HL_6SNT_043No text annotation
HL_6SNT_044No text annotation
HL_6SNT_045No text annotation
HL_6SNT_046No text annotation
HL_6SNT_047No text annotation
HL_6SNT_048No text annotation
HL_6SNT_049No text annotation
HL_6SNT_050No text annotation
HL_6SNT_051No text annotation
HL_6SNT_052No text annotation
HL_6SNT_053No text annotation
HL_6SNT_054No text annotation
HL_6SNT_055No text annotation
HL_6SNT_056No text annotation
HL_6SNT_057No text annotation
HL_6SNT_058No text annotation
HL_6SNT_059No text annotation
HL_6SNT_060No text annotation
HL_6SNT_061No text annotation
HL_6SNT_065GNRA
HL_6SNT_073No text annotation
HL_6SNT_077No text annotation
HL_6SNT_085No text annotation
HL_6SNT_087Other HL
HL_6SNT_088No text annotation
HL_6SNT_089No text annotation
HL_6SNT_090No text annotation
HL_6SNT_091No text annotation
HL_6SNT_092No text annotation
HL_6SNT_093No text annotation
HL_6SNT_095No text annotation
HL_6SNT_098GNRA
HL_6SNT_099No text annotation
HL_6SNT_100No text annotation
HL_6SNT_101GNRA
HL_6SNT_102No text annotation
HL_6SNT_103No text annotation
HL_6SNT_104No text annotation
HL_6SNT_105GNRA
HL_6SNT_106No text annotation
HL_6SNT_108No text annotation
HL_6SNT_109Other HL

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6SNT_0011/1/3:4,
1/3/155:156
No text annotation
Not in a motif group
IL_6SNT_0021/1/7:8,
1/3/150:152
No text annotation
Not in a motif group
homologous
IL_8C3A_002
IL_61258.12
IL_6SNT_0031/1/13:15,
1/3/144:145
No text annotation
Not in a motif group
homologous
IL_8C3A_003
IL_83039.13
IL_6SNT_0041/1/27:28,
1/1/56:58
Single stack bend
Not in a motif group
homologous
IL_5TBW_004
IL_76488.2
IL_6SNT_0051/1/31:38,
1/1/45:53
tSH-tHW-tHH-tHS
Not in a motif group
homologous
IL_5TBW_005
IL_35728.2
IL_6SNT_0061/1/82:89,
1/1/97:103
No text annotation
Not in a motif group
homologous
IL_8C3A_006
IL_88613.1
IL_6SNT_0071/1/123:124,
1/1/144:149
No text annotation
Not in a motif group
geometric
IL_5TBW_007
IL_19724.2
IL_6SNT_0081/1/125:127,
1/1/141:143
No text annotation
Not in a motif group
homologous
IL_8C3A_008
IL_95997.1
IL_6SNT_0091/1/163:165,
1/1/257:258
Single stack bend
Not in a motif group
homologous
IL_5TBW_009
IL_76488.2
IL_6SNT_0101/1/169:170,
1/1/248:253
No text annotation
Not in a motif group
homologous
IL_5TBW_010
IL_74684.1
IL_6SNT_0111/1/177:179,
1/1/237:241
Major groove platform with extra pair
Not in a motif group
homologous
IL_5TBW_011
IL_63450.2
IL_6SNT_0121/1/189:191,
1/1/204:205
No text annotation
Not in a motif group
homologous
IL_8C3A_013
IL_83039.13
IL_6SNT_0131/1/337:339,
1/3/25:26
Single bulged A
Not in a motif group
homologous
IL_5TBW_013
IL_37497.2
IL_6SNT_0141/1/376:379,
1/1/390:403
No text annotation
Not in a motif group
homologous
IL_5TBW_014
IL_60992.6
IL_6SNT_0151/1/404:410,
1/3/13:19
No text annotation
Not in a motif group
homologous
IL_8C3A_016
IL_66414.6
IL_6SNT_0161/1/429:431,
1/1/628:630
No text annotation
Not in a motif group
homologous
IL_5TBW_016
IL_51629.2
IL_6SNT_0181/1/512:513,
1/1/577:579
No text annotation
Not in a motif group
homologous
IL_8C3A_020
IL_37497.2
IL_6SNT_0191/1/517:525,
1/1/567:573
No text annotation
Not in a motif group
homologous
IL_5TBW_019
IL_23992.1
IL_6SNT_0201/1/531:538,
1/1/553:561
No text annotation
Not in a motif group
homologous
IL_5TBW_020
IL_07703.1
IL_6SNT_0211/1/668:670,
1/1/792:794
No text annotation
Not in a motif group
homologous
IL_8C3A_023
IL_95997.1
IL_6SNT_0221/1/680:684,
1/1/696:700
No text annotation
Not in a motif group
homologous
IL_5TBW_022
IL_74284.1
IL_6SNT_0231/1/725:728,
1/1/741:745
No text annotation
Not in a motif group
homologous
IL_8C3A_025
IL_07235.1
IL_6SNT_0241/1/752:753,
1/1/779:781
No text annotation
Not in a motif group
homologous
IL_8C3A_026
IL_37497.2
IL_6SNT_0251/1/755:756,
1/1/775:777
Single bulged U
Not in a motif group
homologous
IL_5TBW_025
IL_83039.13
IL_6SNT_0271/1/803:805,
1/1/938:940
No text annotation
Not in a motif group
homologous
IL_8C3A_029
IL_95997.1
IL_6SNT_0281/1/805:809,
1/1/931:938
No text annotation
Not in a motif group
geometric
IL_5TBW_028
IL_17470.6
IL_6SNT_0341/1/954:956,
1/1/965:967
No text annotation
Not in a motif group
homologous
IL_8C3A_037
IL_95997.1
IL_6SNT_0351/1/969:970,
1/1/1111:1113
No text annotation
Not in a motif group
homologous
IL_8C3A_038
IL_76488.2
IL_6SNT_0361/1/977:982,
1/1/1101:1104
No text annotation
Not in a motif group
IL_6SNT_0371/1/983:985,
1/1/1099:1100
No text annotation
Not in a motif group
homologous
IL_8C3A_040
IL_00225.2
IL_6SNT_0461/1/1120:1122,
1/1/1136:1138
No text annotation
Not in a motif group
homologous
IL_5TBW_046
IL_95997.1
IL_6SNT_0471/1/1167:1171,
1/1/1328:1332
UAA/GAN
Not in a motif group
homologous
IL_5TBW_048
IL_89002.2
IL_6SNT_0481/1/1173:1180,
1/1/1325:1326
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5TBW_049
IL_15861.7
IL_6SNT_0491/1/1180:1182,
1/1/1324:1325
No text annotation
Not in a motif group
homologous
IL_8C3A_053
IL_83039.13
IL_6SNT_0501/1/1187:1194,
1/1/1314:1319
No text annotation
Not in a motif group
homologous
IL_8C3A_054
IL_27086.1
IL_6SNT_0511/1/1194:1205,
1/1/1299:1314
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_53762.1
IL_6SNT_0521/1/1207:1209,
1/1/1296:1297
No text annotation
Not in a motif group
homologous
IL_8C3A_056
IL_83039.13
IL_6SNT_0531/1/1218:1228,
1/1/1281:1287
No text annotation
Not in a motif group
IL_6SNT_0551/1/1376:1378,
1/1/1428:1431
No text annotation
Not in a motif group
homologous
IL_8C3A_061
IL_52767.2
IL_6SNT_0561/1/1385:1387,
1/1/1420:1421
No text annotation
Not in a motif group
homologous
IL_8C3A_062
IL_37497.2
IL_6SNT_0571/1/1388:1395,
1/1/1415:1419
No text annotation
Not in a motif group
homologous
IL_8C3A_063
IL_70923.2
IL_6SNT_0581/1/1398:1400,
1/1/1411:1412
Single bulged A
Not in a motif group
homologous
IL_5TBW_060
IL_37497.2
IL_6SNT_0591/1/1444:1450,
1/1/2354:2359
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_061
IL_76042.2
IL_6SNT_0881/1/2391:2394,
1/1/2986:2988
No text annotation
Not in a motif group
homologous
IL_8C3A_096
IL_63450.2
IL_6SNT_1001/1/2824:2826,
1/1/2863:2865
No text annotation
Not in a motif group
geometric
IL_5TBW_103
IL_95997.1
IL_6SNT_1011/1/2826:2828,
1/1/2862:2863
Major groove platform
Not in a motif group
homologous
IL_5TBW_104
IL_76223.2
IL_6SNT_1021/1/2828:2830,
1/1/2858:2862
No text annotation
Not in a motif group
geometric
IL_5TBW_105
IL_92788.2
IL_6SNT_1031/1/2835:2839,
1/1/2849:2853
No text annotation
Not in a motif group
homologous
IL_8C3A_114
NA
IL_6SNT_1041/1/2876:2877,
1/1/2949:2951
No text annotation
Not in a motif group
homologous
IL_8C3A_115
IL_76223.2
IL_6SNT_1051/1/2879:2881,
1/1/2943:2947
No text annotation
Not in a motif group
homologous
IL_8C3A_116
IL_90933.2
IL_6SNT_1061/1/2881:2882,
1/1/2940:2943
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_109
IL_71530.2
IL_6SNT_1071/1/2889:2891,
1/1/2912:2914
No text annotation
Not in a motif group
geometric
IL_5TBW_110
IL_51629.2
IL_6SNT_1081/1/2891:2892,
1/1/2909:2912
Minor groove platform with intercalation
Not in a motif group
geometric
IL_5TBW_111
IL_95601.3
IL_6SNT_1091/1/2918:2920,
1/1/2926:2928
No text annotation
Not in a motif group
geometric
IL_5TBW_112
IL_95997.1
IL_6SNT_1111/1/3004:3007,
1/1/3139:3144
No text annotation
Not in a motif group
homologous
IL_8C3A_123
IL_09705.9
IL_6SNT_1121/1/3012:3014,
1/1/3040:3042
No text annotation
Not in a motif group
homologous
IL_8C3A_124
IL_95997.1
IL_6SNT_1131/1/3018:3025,
1/1/3030:3036
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5TBW_116
IL_04346.7
IL_6SNT_1141/1/3047:3051,
1/1/3091:3094
No text annotation
Not in a motif group
homologous
IL_8C3A_126
IL_37712.2
IL_6SNT_1151/1/3054:3059,
1/1/3084:3088
No text annotation
Not in a motif group
homologous
IL_8C3A_127
IL_17136.1
IL_6SNT_1161/1/3063:3064,
1/1/3077:3080
No text annotation
Not in a motif group
homologous
IL_8C3A_128
IL_71530.2
IL_6SNT_1171/1/3103:3107,
1/1/3127:3131
No text annotation
Not in a motif group
homologous
IL_8C3A_129
IL_89002.2
IL_6SNT_1181/1/3164:3166,
1/1/3284:3286
No text annotation
Not in a motif group
homologous
IL_8C3A_130
IL_95997.1
IL_6SNT_1201/1/3177:3179,
1/1/3210:3211
Single bulged A
Not in a motif group
geometric
IL_5TBW_123
IL_37497.2
IL_6SNT_1211/1/3179:3188,
1/1/3204:3210
No text annotation
Not in a motif group
homologous
IL_5TBW_124
IL_15174.1
IL_6SNT_1221/1/3193:3194,
1/1/3197:3199
Single bulged U
Not in a motif group
geometric
IL_5TBW_125
IL_83039.13
IL_6SNT_1231/1/3225:3229,
1/1/3258:3260
No text annotation
Not in a motif group
homologous
IL_8C3A_133
IL_19389.6
IL_6SNT_1241/1/3233:3235,
1/1/3252:3254
No text annotation
Not in a motif group
geometric
IL_5TBW_042
IL_95997.1
IL_6SNT_1251/1/3235:3238,
1/1/3249:3252
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5TBW_128
IL_30621.2
IL_6SNT_1261/1/3300:3303,
1/1/3311:3314
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_129
IL_30621.2
IL_6SNT_1271/1/3318:3320,
1/1/3387:3388
Single bulged U
Not in a motif group
geometric
IL_5TBW_130
IL_83039.13
IL_6SNT_1281/1/3324:3325,
1/1/3381:3383
Single bulged U
Not in a motif group
homologous
IL_5TBW_131
IL_83039.13
IL_6SNT_1291/1/3328:3330,
1/1/3373:3378
No text annotation
Not in a motif group
homologous
IL_8C3A_138
IL_90933.2
IL_6SNT_1301/1/3332:3337,
1/1/3367:3371
No text annotation
Not in a motif group
homologous
IL_8C3A_139
IL_83162.5
IL_6SNT_1311/1/3340:3342,
1/1/3363:3364
Single bulged U
Not in a motif group
homologous
IL_5TBW_134
IL_83039.13
IL_6SNT_1321/1/3342:3345,
1/1/3360:3363
Double sheared
Not in a motif group
geometric
IL_4V9F_100
IL_09705.9
IL_6SNT_1331/2/24:26,
1/2/600:601
Single bulged C
Not in a motif group
homologous
IL_4V88_384
IL_61258.12
IL_6SNT_1341/2/35:37,
1/2/471:473
UC cWW
Not in a motif group
homologous
IL_4V88_385
IL_51629.2
IL_6SNT_1351/2/37:41,
1/2/466:471
No text annotation
Not in a motif group
geometric
IL_4V88_386
IL_41507.1
IL_6SNT_1361/2/42:48,
1/2/431:433
No text annotation
Not in a motif group
homologous
IL_4V88_387
IL_33912.1
IL_6SNT_1371/2/50:52,
1/2/428:429
Minor groove platform
Not in a motif group
homologous
IL_4V88_388
IL_93353.1
IL_6SNT_1381/2/58:63,
1/2/87:89
No text annotation
Not in a motif group
homologous
IL_4V88_389
IL_95004.1
IL_6SNT_1391/2/64:69,
1/2/82:86
No text annotation
Not in a motif group
homologous
IL_4V88_390
IL_77691.1
IL_6SNT_1401/2/109:112,
1/2/302:305
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_391
IL_30621.2
IL_6SNT_1411/2/113:116,
1/2/300:301
Multiple bulged bases
Not in a motif group
homologous
IL_4V88_392
IL_44546.1
IL_6SNT_1421/2/117:122,
1/2/295:299
No text annotation
Not in a motif group
homologous
IL_4V88_393
IL_64181.2
IL_6SNT_1431/2/143:149,
1/2/165:172
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4V88_394
IL_80604.2
IL_6SNT_1441/2/150:152,
1/2/162:164
Isolated cWH basepair
Not in a motif group
geometric
IL_6RA4_002
IL_51629.2
IL_6SNT_1451/2/186:189,
1/2/196:199
Double sheared
Not in a motif group
homologous
IL_4V88_396
IL_09705.9
IL_6SNT_1461/2/204:206,
1/2/259:263
Major groove platform with extra cWW
Not in a motif group
geometric
IL_7RQB_022
IL_05564.2
IL_6SNT_1471/2/206:208,
1/2/257:259
No text annotation
Not in a motif group
homologous
IL_4V88_398
IL_95997.1
IL_6SNT_1481/2/265:267,
1/2/288:289
Single bulged A
Not in a motif group
homologous
IL_4V88_399
IL_37497.2
IL_6SNT_1491/2/270:273,
1/2/283:285
No text annotation
Not in a motif group
homologous
IL_4V88_400
IL_47298.1
IL_6SNT_1501/2/275:276,
1/2/279:281
Single bulged U
Not in a motif group
geometric
IL_5F9R_003
IL_83039.13
IL_6SNT_1511/2/311:316,
1/2/348:355
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4V88_402
IL_45067.2
IL_6SNT_1521/2/318:323,
1/2/345:346
No text annotation
Not in a motif group
homologous
IL_4V88_403
IL_48100.2
IL_6SNT_1541/2/389:391,
1/2/406:408
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_405
IL_51629.2
IL_6SNT_1551/2/411:413,
1/2/420:422
Isolated near basepair
Not in a motif group
homologous
IL_4V88_406
IL_52767.2
IL_6SNT_1561/2/439:441,
1/2/463:464
Single bulged U
Not in a motif group
geometric
IL_4V88_407
IL_83039.13
IL_6SNT_1571/2/443:447,
1/2/460:461
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_6SNT_1581/2/447:448,
1/2/458:460
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.2
IL_6SNT_1591/2/481:482,
1/2/505:507
Single bulged A
Not in a motif group
homologous
IL_4V88_409
IL_37497.2
IL_6SNT_1601/2/514:516,
1/2/536:543
No text annotation
Not in a motif group
IL_6SNT_1611/2/517:518,
1/2/533:535
Minor groove platform
Not in a motif group
geometric
IL_4V88_388
IL_93353.1
IL_6SNT_1621/2/518:520,
1/2/532:533
Minor groove platform
Not in a motif group
homologous
IL_4V88_412
IL_93353.1
IL_6SNT_1661/2/616:622,
1/2/1104:1105
No text annotation
Not in a motif group
homologous
IL_4V88_416
IL_69996.1
IL_6SNT_1671/2/624:626,
1/2/973:975
No text annotation
Not in a motif group
homologous
IL_4V88_417
IL_95997.1
IL_6SNT_1681/2/627:631,
1/2/968:972
tSH-tHW-tHS
Not in a motif group
homologous
IL_4V88_418
IL_17136.1
IL_6SNT_1741/2/865:866,
1/2/962:965
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4V88_428
IL_50694.2
IL_6SNT_1751/2/867:870,
1/2/957:961
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_429
IL_30621.2
IL_6SNT_1761/2/871:874,
1/2/953:956
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_430
IL_30621.2
IL_6SNT_1771/2/874:878,
1/2/950:953
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_431
IL_30621.2
IL_6SNT_1781/2/885:888,
1/2/924:927
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_432
IL_30621.2
IL_6SNT_1831/2/1034:1036,
1/2/1095:1101
No text annotation
Not in a motif group
homologous
IL_4V88_437
IL_19557.3
IL_6SNT_1841/2/1041:1044,
1/2/1074:1077
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_438
IL_30621.2
IL_6SNT_1851/2/1051:1053,
1/2/1066:1067
Single bulged U
Not in a motif group
homologous
IL_4V88_439
IL_83039.13
IL_6SNT_1891/2/1157:1160,
1/2/1617:1621
C-loop
Not in a motif group
homologous
IL_4V88_443
IL_63596.6
IL_6SNT_1901/2/1173:1175,
1/2/1464:1466
No text annotation
Not in a motif group
homologous
IL_4V88_444
IL_95997.1
IL_6SNT_1911/2/1178:1179,
1/2/1459:1461
Minor groove platform
Not in a motif group
homologous
IL_4V88_445
IL_42622.2
IL_6SNT_2241/3/44:64,
1/3/96:100
No text annotation
Not in a motif group
geometric
IL_5TBW_144
IL_44998.1
IL_6SNT_2251/3/64:66,
1/3/93:96
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5TBW_145
IL_82068.2
IL_6SNT_2261/3/68:69,
1/3/89:91
Single bulged U
Not in a motif group
geometric
IL_5TBW_146
IL_83039.13
IL_6SNT_2271/4/15:16,
1/4/63:65
Single bulged A
Not in a motif group
homologous
IL_5TBW_372
IL_37497.2
IL_6SNT_2281/4/21:27,
1/4/53:58
No text annotation
Not in a motif group
homologous
IL_5TBW_373
IL_10207.2
IL_6SNT_2291/4/28:29,
1/4/49:52
Minor groove platform
Not in a motif group
homologous
IL_5TBW_374
IL_63797.2
IL_6SNT_2301/4/29:30,
1/4/47:49
Single stack bend
Not in a motif group
geometric
IL_5TBW_375
IL_76488.2
IL_6SNT_2311/4/32:36,
1/4/41:45
Symmetric double minor groove platform
Not in a motif group
geometric
IL_5TBW_376
IL_58103.6
IL_6SNT_2321/4/72:80,
1/4/100:106
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_377
IL_04346.7
IL_6SNT_2331/4/84:87,
1/4/94:96
No text annotation
Not in a motif group
homologous
IL_5TBW_378
IL_95997.1

Problematic loops

#loop idProblemSequence
IL_6SNT_017No text annotation
IL_6SNT_026No text annotation
IL_6SNT_029Single bulged G
IL_6SNT_030No text annotation
IL_6SNT_031No text annotation
IL_6SNT_032No text annotation
IL_6SNT_033No text annotation
IL_6SNT_0387x7 Sarcin-Ricin with intercalated A; G-bulge
IL_6SNT_039No text annotation
IL_6SNT_040No text annotation
IL_6SNT_041Tandem non-canonical cWW pairs
IL_6SNT_042No text annotation
IL_6SNT_043Other IL
IL_6SNT_044No text annotation
IL_6SNT_045No text annotation
IL_6SNT_054No text annotation
IL_6SNT_060No text annotation
IL_6SNT_061No text annotation
IL_6SNT_062No text annotation
IL_6SNT_063Multiple bulged bases with near cWW
IL_6SNT_064No text annotation
IL_6SNT_065No text annotation
IL_6SNT_066No text annotation
IL_6SNT_067No text annotation
IL_6SNT_068Single stack bend
IL_6SNT_069No text annotation
IL_6SNT_070No text annotation
IL_6SNT_071Kink-turn
IL_6SNT_072No text annotation
IL_6SNT_073No text annotation
IL_6SNT_074Major groove platform; stack outside cWW
IL_6SNT_075No text annotation
IL_6SNT_076tSH-tSH-tHH-tHS
IL_6SNT_077No text annotation
IL_6SNT_078No text annotation
IL_6SNT_079Single bulged A
IL_6SNT_080No text annotation
IL_6SNT_081No text annotation
IL_6SNT_082No text annotation
IL_6SNT_083No text annotation
IL_6SNT_084No text annotation
IL_6SNT_085No text annotation
IL_6SNT_086No text annotation
IL_6SNT_087No text annotation
IL_6SNT_089No text annotation
IL_6SNT_090No text annotation
IL_6SNT_091No text annotation
IL_6SNT_092No text annotation
IL_6SNT_093No text annotation
IL_6SNT_094No text annotation
IL_6SNT_095Single bulged A
IL_6SNT_096No text annotation
IL_6SNT_097Tandem non-canonical cWW pairs
IL_6SNT_098No text annotation
IL_6SNT_099Major groove platform
IL_6SNT_110Single bulged A
IL_6SNT_119No text annotation
IL_6SNT_153No text annotation
IL_6SNT_163SSU/LSU pseudoknot
IL_6SNT_164Single bulged U
IL_6SNT_165No text annotation
IL_6SNT_169No text annotation
IL_6SNT_170Major groove minor groove platform; mini C-loop
IL_6SNT_171No text annotation
IL_6SNT_172No text annotation
IL_6SNT_173No text annotation
IL_6SNT_179No text annotation
IL_6SNT_180Kink-turn
IL_6SNT_181Other IL
IL_6SNT_182tSH-tHW-tHS
IL_6SNT_1868x6 Sarcin-Ricin with inserted Y; G-bulge
IL_6SNT_187Single bulged A
IL_6SNT_188Single bulged G
IL_6SNT_192CC cWW
IL_6SNT_193No text annotation
IL_6SNT_194No text annotation
IL_6SNT_195No text annotation
IL_6SNT_196Single bulged U
IL_6SNT_197Isolated cWS basepair
IL_6SNT_198Minor groove platform with extra cWW
IL_6SNT_199Single bulged A
IL_6SNT_200Isolated cWH basepair
IL_6SNT_201Minor groove platform
IL_6SNT_202No text annotation
IL_6SNT_203Minor groove platform
IL_6SNT_204No text annotation
IL_6SNT_205Major groove platform; stack outside cWW
IL_6SNT_206No text annotation
IL_6SNT_207No text annotation
IL_6SNT_208Tandem non-canonical cWW pairs
IL_6SNT_209No text annotation
IL_6SNT_210No text annotation
IL_6SNT_211No text annotation
IL_6SNT_212No text annotation
IL_6SNT_213Tandem non-canonical cWW pairs
IL_6SNT_214AA cWW
IL_6SNT_215Double sheared
IL_6SNT_216Single bulged U
IL_6SNT_217No text annotation
IL_6SNT_218Double sheared
IL_6SNT_219No text annotation
IL_6SNT_220Tandem non-canonical cWW pairs
IL_6SNT_221Triple sheared
IL_6SNT_222No text annotation
IL_6SNT_223No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6SNT_0011/1/113:123,
1/1/149:158,
1/1/263:267
No text annotation
Not in a motif group
J3_6SNT_0021/1/369:376,
1/1/403:404,
1/3/19:20
No text annotation
Not in a motif group
homologous
J3_5TBW_002
NA
J3_6SNT_0031/1/502:503,
1/1/588:597,
1/1/606:611
No text annotation
Not in a motif group
homologous
J3_5TBW_003
NA
J3_6SNT_0061/1/986:987,
1/1/1062:1066,
1/1/1092:1098
No text annotation
Not in a motif group
homologous
J3_5TBW_006
NA
J3_6SNT_0151/1/2886:2889,
1/1/2914:2916,
1/1/2930:2936
No text annotation
Not in a motif group
homologous
J3_5TBW_014
NA
J3_6SNT_0161/1/3298:3300,
1/1/3314:3318,
1/1/3388:3390
No text annotation
Not in a motif group
homologous
J3_5TBW_015
NA
J3_6SNT_0171/2/41:42,
1/2/433:439,
1/2/464:466
No text annotation
Not in a motif group
J3_6SNT_0181/2/633:635,
1/2/861:865,
1/2/965:966
No text annotation
Not in a motif group
J3_6SNT_0201/2/881:884,
1/2/928:936,
1/2/943:947
No text annotation
Not in a motif group
homologous
J3_4V88_033
NA
J3_6SNT_0211/2/1037:1039,
1/2/1079:1083,
1/2/1090:1094
No text annotation
Not in a motif group
homologous
J3_4V88_034
NA
J3_6SNT_0221/2/1161:1164,
1/2/1581:1587,
1/2/1609:1616
No text annotation
Not in a motif group
homologous
J3_4V88_035
NA
J3_6SNT_0231/2/1168:1171,
1/2/1468:1470,
1/2/1574:1577
No text annotation
Not in a motif group
homologous
J3_4V88_036
NA
J3_6SNT_0291/2/1470:1474,
1/2/1533:1540,
1/2/1571:1574
No text annotation
Not in a motif group
homologous
J3_8C3A_044
NA
J3_6SNT_0301/4/9:14,
1/4/66:67,
1/4/111:112
No text annotation
Not in a motif group
homologous
J3_5TBW_045
NA

Problematic loops

#loop idProblemSequence
J3_6SNT_004No text annotation
J3_6SNT_005No text annotation
J3_6SNT_007No text annotation
J3_6SNT_008No text annotation
J3_6SNT_009No text annotation
J3_6SNT_010No text annotation
J3_6SNT_011No text annotation
J3_6SNT_012No text annotation
J3_6SNT_013No text annotation
J3_6SNT_014No text annotation
J3_6SNT_019No text annotation
J3_6SNT_024No text annotation
J3_6SNT_025No text annotation
J3_6SNT_026No text annotation
J3_6SNT_027No text annotation
J3_6SNT_028No text annotation

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