7ZUX Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7ZUX_001 | 1/2/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_7ZUX_002 | 1/2/70:81 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_7ZUX_003 | 1/2/153:161 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_7ZUX_004 | 1/2/190:195 | No text annotation | geometric HL_4V88_198 NA | |
| HL_7ZUX_005 | 1/2/230:235 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7ZUX_006 | 1/2/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_7ZUX_007 | 1/2/276:279 | Mini UNCG | homologous HL_4V88_192 NA | |
| HL_7ZUX_008 | 1/2/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_7ZUX_009 | 1/2/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_7ZUX_010 | 1/2/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_7ZUX_011 | 1/2/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_7ZUX_012 | 1/2/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_7ZUX_013 | 1/2/491:496 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7ZUX_014 | 1/2/520:532 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7ZUX_015 | 1/2/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_7ZUX_018 | 1/2/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_7ZUX_019 | 1/2/777:783 | No text annotation | homologous HL_8P9A_207 HL_48417.5 | |
| HL_7ZUX_125 | 1/2/829:843 | No text annotation | homologous HL_8P9A_236 HL_88364.2 | |
| HL_7ZUX_021 | 1/2/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_7ZUX_022 | 1/2/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_7ZUX_023 | 1/2/997:1007 | No text annotation | homologous HL_4V88_208 NA | |
| HL_7ZUX_024 | 1/2/1055:1064 | No text annotation | ||
| HL_7ZUX_025 | 1/2/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_7ZUX_026 | 1/2/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_7ZUX_027 | 1/2/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_7ZUX_028 | 1/2/1238:1247 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_7ZUX_029 | 1/2/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_7ZUX_030 | 1/2/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_7ZUX_031 | 1/2/1359:1364 | No text annotation | homologous HL_8C3A_221 NA | |
| HL_7ZUX_121 | 1/2/1396:1402 | No text annotation | ||
| HL_7ZUX_033 | 1/2/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_7ZUX_034 | 1/2/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_7ZUX_035 | 1/2/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_7ZUX_036 | 1/2/1698:1703 | No text annotation | ||
| HL_7ZUX_037 | 1/2/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_7ZUX_122 | 1/3/47:56 | No text annotation | homologous HL_8P9A_186 HL_93438.2 | |
| HL_7ZUX_038 | 1/3/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_7ZUX_039 | 1/3/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_7ZUX_040 | 1/3/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_7ZUX_041 | 1/4/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_7ZUX_042 | 1/4/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7ZUX_043 | 1/5/38:45 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_7ZUX_044 | 1/5/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7ZUX_045 | 1/5/90:96 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_7ZUX_046 | 1/5/132:136 | No text annotation | homologous HL_5TBW_004 NA | |
| HL_7ZUX_047 | 1/5/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7ZUX_048 | 1/5/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_7ZUX_049 | 1/5/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7ZUX_123 | 1/5/278:287 | T-loop related | homologous HL_8P9A_120 HL_77436.5 | |
| HL_7ZUX_051 | 1/5/303:312 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_7ZUX_052 | 1/5/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7ZUX_053 | 1/5/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7ZUX_054 | 1/5/542:551 | No text annotation | geometric HL_8C3A_006 NA | |
| HL_7ZUX_055 | 1/5/600:605 | GNRA | homologous HL_5TBW_013 NA | |
| HL_7ZUX_056 | 1/5/641:650 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7ZUX_057 | 1/5/687:695 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_7ZUX_058 | 1/5/708:713 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7ZUX_059 | 1/5/733:738 | GNRA | homologous HL_5TBW_017 NA | |
| HL_7ZUX_060 | 1/5/764:769 | No text annotation | homologous HL_5TBW_018 NA | |
| HL_7ZUX_061 | 1/5/845:850 | GNRA | homologous HL_5TBW_019 NA | |
| HL_7ZUX_062 | 1/5/877:886 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7ZUX_063 | 1/5/911:919 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_7ZUX_064 | 1/5/959:964 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7ZUX_065 | 1/5/1024:1030 | GNRA | homologous HL_5TBW_023 NA | |
| HL_7ZUX_066 | 1/5/1077:1084 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_7ZUX_067 | 1/5/1127:1133 | GNRA | homologous HL_8C3A_025 NA | |
| HL_7ZUX_068 | 1/5/1149:1156 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_7ZUX_069 | 1/5/1240:1250 | No text annotation | homologous HL_5TBW_027 NA | |
| HL_7ZUX_070 | 1/5/1268:1275 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_7ZUX_071 | 1/5/1348:1358 | No text annotation | homologous HL_5TBW_029 NA | |
| HL_7ZUX_072 | 1/5/1404:1409 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7ZUX_073 | 1/5/1463:1471 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7ZUX_074 | 1/5/1507:1513 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7ZUX_075 | 1/5/1545:1550 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7ZUX_076 | 1/5/1567:1573 | No text annotation | geometric HL_4V88_190 NA | |
| HL_7ZUX_077 | 1/5/1600:1609 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_7ZUX_078 | 1/5/1635:1640 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7ZUX_079 | 1/5/1681:1689 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7ZUX_080 | 1/5/1720:1726 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_7ZUX_081 | 1/5/1761:1766 | GNRA related | homologous HL_5TBW_039 NA | |
| HL_7ZUX_082 | 1/5/1793:1797 | Mini UNCG | homologous HL_5TBW_040 NA | |
| HL_7ZUX_083 | 1/5/1845:1852 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_7ZUX_084 | 1/5/1863:1869 | GNRA | homologous HL_8C3A_042 NA | |
| HL_7ZUX_085 | 1/5/1924:1929 | UNCG | homologous HL_5TBW_043 NA | |
| HL_7ZUX_087 | 1/5/2111:2115 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_7ZUX_088 | 1/5/2136:2146 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7ZUX_089 | 1/5/2165:2171 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7ZUX_090 | 1/5/2221:2226 | GNRA | homologous HL_5TBW_048 NA | |
| HL_7ZUX_091 | 1/5/2254:2264 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_7ZUX_092 | 1/5/2293:2301 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7ZUX_093 | 1/5/2370:2379 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7ZUX_095 | 1/5/2536:2545 | No text annotation | ||
| HL_7ZUX_096 | 1/5/2569:2574 | No text annotation | ||
| HL_7ZUX_097 | 1/5/2617:2625 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_7ZUX_098 | 1/5/2634:2646 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_7ZUX_099 | 1/5/2674:2682 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7ZUX_100 | 1/5/2694:2701 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7ZUX_101 | 1/5/2725:2733 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7ZUX_102 | 1/5/2745:2750 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7ZUX_103 | 1/5/2777:2785 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_7ZUX_104 | 1/5/2841:2849 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_7ZUX_105 | 1/5/2898:2905 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_7ZUX_106 | 1/5/2921:2927 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_7ZUX_107 | 1/5/2964:2969 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7ZUX_108 | 1/5/3026:3031 | GNRA | homologous HL_8C3A_066 NA | |
| HL_7ZUX_109 | 1/5/3069:3074 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7ZUX_110 | 1/5/3111:3125 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7ZUX_111 | 1/5/3195:3198 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_7ZUX_112 | 1/5/3241:3248 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_7ZUX_113 | 1/5/3304:3312 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_7ZUX_114 | 1/5/3351:3354 | Mini UNCG | geometric HL_4WF9_037 HL_48778.2 | |
| HL_7ZUX_115 | 1/6/13:22 | No text annotation | homologous HL_6ORD_035 NA | |
| HL_7ZUX_116 | 1/6/31:39 | No text annotation | homologous HL_1QU2_002 HL_78347.4 | |
| HL_7ZUX_117 | 1/6/52:62 | No text annotation | homologous HL_4WSM_226 NA | |
| HL_7ZUX_118 | 1/7/13:23 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
| HL_7ZUX_119 | 1/7/32:40 | tRNA anticodon loop | homologous HL_4V90_033 HL_06059.5 | |
| HL_7ZUX_120 | 1/7/54:62 | T-loop with 2 stacked bulged bases | homologous HL_4YYE_003 HL_28252.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7ZUX_016 | No text annotation | ||
| HL_7ZUX_017 | No text annotation | ||
| HL_7ZUX_020 | Pseudoknot geometry | ||
| HL_7ZUX_032 | No text annotation | ||
| HL_7ZUX_050 | No text annotation | ||
| HL_7ZUX_086 | No text annotation | ||
| HL_7ZUX_094 | No text annotation | ||
| HL_7ZUX_124 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7ZUX_240 | 1/2/24:26, 1/2/600:601 | Single bulged C | homologous IL_8P9A_373 IL_61258.15 | |
| IL_7ZUX_002 | 1/2/35:37, 1/2/471:473 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_7ZUX_003 | 1/2/37:41, 1/2/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_7ZUX_004 | 1/2/42:48, 1/2/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_7ZUX_005 | 1/2/50:52, 1/2/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_7ZUX_006 | 1/2/58:63, 1/2/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_7ZUX_007 | 1/2/64:69, 1/2/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_7ZUX_008 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_7ZUX_009 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_7ZUX_010 | 1/2/117:122, 1/2/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_7ZUX_011 | 1/2/144:149, 1/2/165:171 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_12745.1 | |
| IL_7ZUX_012 | 1/2/150:152, 1/2/162:164 | Isolated cWH basepair | geometric IL_3CZW_001 IL_10167.5 | |
| IL_7ZUX_013 | 1/2/186:189, 1/2/196:199 | Double sheared | homologous IL_4V88_396 NA | |
| IL_7ZUX_014 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW | homologous IL_4V88_397 NA | |
| IL_7ZUX_015 | 1/2/206:208, 1/2/257:259 | Isolated non-canonical cWW pair | geometric IL_2O3Y_001 IL_28037.2 | |
| IL_7ZUX_016 | 1/2/265:267, 1/2/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_7ZUX_017 | 1/2/270:273, 1/2/283:285 | No text annotation | homologous IL_4V88_400 NA | |
| IL_7ZUX_018 | 1/2/275:276, 1/2/279:281 | Single bulged U | geometric IL_5FQ5_002 IL_89505.4 | |
| IL_7ZUX_019 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_7ZUX_020 | 1/2/318:323, 1/2/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_7ZUX_021 | 1/2/363:365, 1/2/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_7ZUX_022 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_7ZUX_023 | 1/2/411:413, 1/2/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_7ZUX_024 | 1/2/439:441, 1/2/463:464 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_7ZUX_025 | 1/2/443:447, 1/2/460:461 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_7ZUX_026 | 1/2/447:448, 1/2/458:460 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_7ZUX_027 | 1/2/481:482, 1/2/505:507 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_7ZUX_028 | 1/2/514:516, 1/2/536:543 | No text annotation | geometric IL_8VTW_081 NA | |
| IL_7ZUX_029 | 1/2/517:518, 1/2/533:535 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_7ZUX_030 | 1/2/518:520, 1/2/532:533 | Minor groove platform | homologous IL_4V88_412 NA | |
| IL_7ZUX_031 | 1/2/550:557, 1/2/587:588 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_7ZUX_032 | 1/2/557:559, 1/2/586:587 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_7ZUX_033 | 1/2/562:568, 1/2/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_7ZUX_034 | 1/2/616:622, 1/2/1104:1105 | No text annotation | homologous IL_4V88_416 NA | |
| IL_7ZUX_035 | 1/2/624:626, 1/2/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_7ZUX_036 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_7ZUX_037 | 1/2/646:648, 1/2/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_7ZUX_038 | 1/2/699:700, 1/2/738:740 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_7ZUX_039 | 1/2/746:747, 1/2/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_7ZUX_040 | 1/2/748:750, 1/2/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_7ZUX_254 | 1/2/751:759, 1/2/791:798 | No text annotation | homologous IL_8CRE_430 IL_59049.1 | |
| IL_7ZUX_042 | 1/2/817:824, 1/2/848:854 | No text annotation | ||
| IL_7ZUX_043 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_7ZUX_241 | 1/2/868:869, 1/2/958:960 | Single bulged U | geometric IL_8P9A_281 IL_89505.4 | |
| IL_7ZUX_045 | 1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_7ZUX_046 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_7ZUX_047 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_7ZUX_048 | 1/2/893:895, 1/2/917:919 | Isolated non-canonical cWW pair | homologous IL_4V88_433 NA | |
| IL_7ZUX_049 | 1/2/895:899, 1/2/910:917 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_7ZUX_050 | 1/2/985:990, 1/2/1014:1016 | Other IL | homologous IL_4V88_435 NA | |
| IL_7ZUX_051 | 1/2/990:994, 1/2/1010:1014 | tSH-tHW-tHS | geometric IL_4LFB_033 IL_17136.7 | |
| IL_7ZUX_052 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_7ZUX_053 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_7ZUX_054 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_7ZUX_055 | 1/2/1111:1118, 1/2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_7ZUX_056 | 1/2/1146:1147, 1/2/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_7ZUX_057 | 1/2/1149:1151, 1/2/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_7ZUX_058 | 1/2/1157:1160, 1/2/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_7ZUX_059 | 1/2/1173:1175, 1/2/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_7ZUX_060 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_7ZUX_061 | 1/2/1213:1215, 1/2/1448:1450 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
| IL_7ZUX_062 | 1/2/1224:1230, 1/2/1257:1259 | No text annotation | ||
| IL_7ZUX_242 | 1/2/1224:1233, 1/2/1252:1259 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_7ZUX_063 | 1/2/1230:1233, 1/2/1252:1257 | No text annotation | ||
| IL_7ZUX_064 | 1/2/1234:1236, 1/2/1249:1251 | No text annotation | homologous IL_4V88_448 NA | |
| IL_7ZUX_065 | 1/2/1268:1270, 1/2/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_7ZUX_066 | 1/2/1272:1276, 1/2/1436:1438 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_7ZUX_243 | 1/2/1272:1278, 1/2/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_7ZUX_067 | 1/2/1276:1278, 1/2/1430:1436 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_7ZUX_068 | 1/2/1280:1281, 1/2/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_7ZUX_069 | 1/2/1290:1292, 1/2/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_7ZUX_070 | 1/2/1306:1308, 1/2/1317:1318 | Multiple bulged bases | geometric IL_6JQ5_005 IL_42771.1 | |
| IL_7ZUX_071 | 1/2/1339:1342, 1/2/1383:1385 | Isolated non-canonical cWW pair | homologous IL_4V88_455 NA | |
| IL_7ZUX_072 | 1/2/1345:1348, 1/2/1377:1380 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_7ZUX_073 | 1/2/1352:1354, 1/2/1369:1373 | Isolated non-canonical cWW pair | homologous IL_4V88_457 NA | |
| IL_7ZUX_074 | 1/2/1389:1391, 1/2/1407:1412 | Major groove platform; stack outside cWW | geometric IL_4V88_458 NA | |
| IL_7ZUX_075 | 1/2/1480:1487, 1/2/1519:1527 | No text annotation | homologous IL_4V88_459 NA | |
| IL_7ZUX_076 | 1/2/1488:1494, 1/2/1513:1518 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_7ZUX_077 | 1/2/1495:1498, 1/2/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_7ZUX_078 | 1/2/1540:1545, 1/2/1566:1571 | No text annotation | geometric IL_4V88_462 NA | |
| IL_7ZUX_079 | 1/2/1636:1638, 1/2/1764:1767 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_7ZUX_080 | 1/2/1638:1641, 1/2/1760:1764 | No text annotation | homologous IL_4V88_464 NA | |
| IL_7ZUX_081 | 1/2/1642:1644, 1/2/1757:1759 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_87907.2 | |
| IL_7ZUX_082 | 1/2/1644:1647, 1/2/1753:1757 | No text annotation | homologous IL_8CRE_469 IL_11399.2 | |
| IL_7ZUX_083 | 1/2/1650:1652, 1/2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_7ZUX_244 | 1/2/1653:1658, 1/2/1743:1747 | No text annotation | ||
| IL_7ZUX_085 | 1/2/1665:1667, 1/2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_7ZUX_086 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared | geometric IL_4V88_471 NA | |
| IL_7ZUX_087 | 1/2/1672:1674, 1/2/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
| IL_7ZUX_088 | 1/2/1675:1678, 1/2/1723:1726 | Tandem non-canonical cWW pairs | geometric IL_4V88_473 NA | |
| IL_7ZUX_089 | 1/2/1678:1682, 1/2/1719:1723 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_7ZUX_245 | 1/2/1688:1690, 1/2/1711:1713 | Isolated cWH basepair | geometric IL_4WF9_121 IL_10167.5 | |
| IL_7ZUX_091 | 1/2/1693:1695, 1/2/1706:1708 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_87907.2 | |
| IL_7ZUX_092 | 1/3/13:19, 1/5/404:410 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_7ZUX_093 | 1/3/25:26, 1/5/337:339 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_7ZUX_094 | 1/3/44:64, 1/3/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_7ZUX_095 | 1/3/64:66, 1/3/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_7ZUX_096 | 1/3/68:69, 1/3/89:91 | Single bulged U | homologous IL_5TBW_146 NA | |
| IL_7ZUX_097 | 1/3/144:145, 1/5/13:15 | Single bulged U | homologous IL_5TBW_003 NA | |
| IL_7ZUX_098 | 1/3/150:152, 1/5/7:8 | Single bulged C | homologous IL_5TBW_002 NA | |
| IL_7ZUX_100 | 1/4/15:16, 1/4/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7ZUX_101 | 1/4/21:27, 1/4/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_7ZUX_102 | 1/4/28:29, 1/4/49:52 | Minor groove platform | homologous IL_5TBW_374 NA | |
| IL_7ZUX_103 | 1/4/29:30, 1/4/47:49 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_7ZUX_104 | 1/4/32:36, 1/4/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_7ZUX_105 | 1/4/72:80, 1/4/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7ZUX_106 | 1/4/84:87, 1/4/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7ZUX_107 | 1/5/27:28, 1/5/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7ZUX_108 | 1/5/31:38, 1/5/45:53 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_7ZUX_109 | 1/5/82:89, 1/5/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_7ZUX_110 | 1/5/123:124, 1/5/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_7ZUX_111 | 1/5/125:127, 1/5/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_7ZUX_255 | 1/5/163:165, 1/5/257:258 | Single stack bend | homologous IL_8P9A_238 IL_90729.1 | |
| IL_7ZUX_113 | 1/5/169:170, 1/5/248:253 | No text annotation | homologous IL_5TBW_010 NA | |
| IL_7ZUX_256 | 1/5/177:178, 1/5/238:241 | No text annotation | ||
| IL_7ZUX_115 | 1/5/189:191, 1/5/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7ZUX_116 | 1/5/376:379, 1/5/390:403 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_7ZUX_117 | 1/5/429:431, 1/5/629:631 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_7ZUX_119 | 1/5/513:514, 1/5/578:580 | Single bulged A | homologous IL_5TBW_018 NA | |
| IL_7ZUX_120 | 1/5/518:526, 1/5/568:574 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_7ZUX_121 | 1/5/532:539, 1/5/554:562 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_7ZUX_122 | 1/5/669:671, 1/5/793:795 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_7ZUX_123 | 1/5/681:685, 1/5/697:701 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_7ZUX_124 | 1/5/726:729, 1/5/742:746 | UAA/GAN | homologous IL_5TBW_023 NA | |
| IL_7ZUX_125 | 1/5/753:754, 1/5/780:782 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_7ZUX_126 | 1/5/756:757, 1/5/776:778 | Single bulged U | homologous IL_5TBW_025 NA | |
| IL_7ZUX_127 | 1/5/759:764, 1/5/769:774 | No text annotation | geometric IL_5TBW_026 NA | |
| IL_7ZUX_128 | 1/5/804:806, 1/5/939:941 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_7ZUX_129 | 1/5/806:810, 1/5/932:939 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_7ZUX_130 | 1/5/834:835, 1/5/860:862 | Single bulged G | geometric IL_5TBW_029 NA | |
| IL_7ZUX_131 | 1/5/835:839, 1/5/856:860 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_7ZUX_132 | 1/5/870:873, 1/5/889:891 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7ZUX_133 | 1/5/874:876, 1/5/887:888 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7ZUX_134 | 1/5/908:910, 1/5/920:924 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_7ZUX_135 | 1/5/955:957, 1/5/966:968 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7ZUX_136 | 1/5/970:971, 1/5/1112:1114 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_7ZUX_137 | 1/5/978:983, 1/5/1102:1105 | No text annotation | ||
| IL_7ZUX_138 | 1/5/984:986, 1/5/1100:1101 | Single bulged G | homologous IL_5TBW_037 NA | |
| IL_7ZUX_139 | 1/5/992:998, 1/5/1053:1059 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5TBW_038 NA | |
| IL_7ZUX_140 | 1/5/998:999, 1/5/1051:1053 | Minor groove platform | geometric IL_5TBW_039 NA | |
| IL_7ZUX_141 | 1/5/1000:1005, 1/5/1047:1050 | C-loop | homologous IL_5TBW_040 NA | |
| IL_7ZUX_142 | 1/5/1007:1010, 1/5/1042:1045 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_7ZUX_143 | 1/5/1010:1012, 1/5/1040:1042 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_7ZUX_144 | 1/5/1014:1019, 1/5/1035:1038 | Other IL | homologous IL_5TBW_043 NA | |
| IL_7ZUX_145 | 1/5/1070:1072, 1/5/1088:1090 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_7ZUX_146 | 1/5/1075:1077, 1/5/1084:1085 | Single bulged A | geometric IL_5TBW_045 NA | |
| IL_7ZUX_147 | 1/5/1121:1123, 1/5/1137:1139 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_7ZUX_149 | 1/5/1168:1172, 1/5/1329:1333 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7ZUX_150 | 1/5/1174:1181, 1/5/1326:1327 | SSU/LSU pseudoknot | geometric IL_5TBW_049 NA | |
| IL_7ZUX_151 | 1/5/1181:1183, 1/5/1325:1326 | Single bulged U | homologous IL_5TBW_050 NA | |
| IL_7ZUX_152 | 1/5/1188:1195, 1/5/1315:1320 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_7ZUX_153 | 1/5/1195:1206, 1/5/1300:1315 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7ZUX_154 | 1/5/1208:1210, 1/5/1297:1298 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7ZUX_155 | 1/5/1219:1227, 1/5/1284:1288 | Kink-turn | geometric IL_4V9F_042 IL_99692.2 | |
| IL_7ZUX_156 | 1/5/1229:1231, 1/5/1281:1282 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_7ZUX_157 | 1/5/1234:1240, 1/5/1250:1256 | No text annotation | ||
| IL_7ZUX_158 | 1/5/1377:1379, 1/5/1429:1432 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7ZUX_159 | 1/5/1386:1388, 1/5/1421:1422 | Single bulged A | homologous IL_5TBW_058 NA | |
| IL_7ZUX_160 | 1/5/1389:1396, 1/5/1416:1420 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_7ZUX_161 | 1/5/1399:1401, 1/5/1412:1413 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_7ZUX_162 | 1/5/1445:1451, 1/5/2355:2360 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_7ZUX_247 | 1/5/1502:1506, 1/5/1514:1516 | C-loop | homologous IL_8C3A_482 NA | |
| IL_7ZUX_164 | 1/5/1533:1537, 1/5/1586:1591 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7ZUX_165 | 1/5/1562:1564, 1/5/1578:1579 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_7ZUX_166 | 1/5/1564:1566, 1/5/1575:1578 | Isolated non-canonical cWW pair | geometric IL_1RPU_001 IL_87907.2 | |
| IL_7ZUX_167 | 1/5/1566:1567, 1/5/1573:1575 | Single stack bend | geometric IL_5VSU_003 IL_26793.1 | |
| IL_7ZUX_168 | 1/5/1619:1622, 1/5/1825:1827 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_7ZUX_249 | 1/5/1624:1625, 1/5/1820:1823 | No text annotation | homologous IL_8C3A_483 NA | |
| IL_7ZUX_170 | 1/5/1628:1632, 1/5/1812:1817 | No text annotation | geometric IL_5TBW_066 NA | |
| IL_7ZUX_171 | 1/5/1646:1650, 1/5/1807:1811 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_7ZUX_172 | 1/5/1662:1664, 1/5/1787:1789 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_7ZUX_173 | 1/5/1670:1671, 1/5/1779:1781 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_7ZUX_174 | 1/5/1671:1672, 1/5/1777:1779 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_7ZUX_175 | 1/5/1695:1699, 1/5/1748:1753 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_7ZUX_176 | 1/5/1703:1708, 1/5/1738:1744 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_7ZUX_177 | 1/5/1712:1718, 1/5/1728:1734 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_7ZUX_178 | 1/5/1884:1890, 1/5/2347:2350 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_7ZUX_179 | 1/5/1896:1898, 1/5/2339:2341 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7ZUX_180 | 1/5/1899:1902, 1/5/2337:2338 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_7ZUX_250 | 1/5/1899:1907, 1/5/2334:2338 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_7ZUX_181 | 1/5/1902:1907, 1/5/2334:2337 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_7ZUX_182 | 1/5/1919:1924, 1/5/1929:1935 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_7ZUX_183 | 1/5/1941:1943, 1/5/2107:2109 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7ZUX_184 | 1/5/1948:1949, 1/5/2099:2102 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7ZUX_185 | 1/5/2129:2130, 1/5/2324:2326 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7ZUX_186 | 1/5/2157:2162, 1/5/2174:2181 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_7ZUX_187 | 1/5/2197:2200, 1/5/2246:2247 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_7ZUX_188 | 1/5/2201:2202, 1/5/2242:2245 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_7ZUX_189 | 1/5/2205:2211, 1/5/2236:2239 | No text annotation | ||
| IL_7ZUX_190 | 1/5/2212:2218, 1/5/2229:2235 | No text annotation | homologous IL_5TBW_088 NA | |
| IL_7ZUX_191 | 1/5/2277:2278, 1/5/2308:2311 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_7ZUX_192 | 1/5/2278:2289, 1/5/2305:2308 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_7ZUX_193 | 1/5/2392:2395, 1/5/2987:2989 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_7ZUX_194 | 1/5/2397:2399, 1/5/2982:2985 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_7ZUX_195 | 1/5/2410:2412, 1/5/2812:2813 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_7ZUX_196 | 1/5/2413:2414, 1/5/2808:2811 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_7ZUX_197 | 1/5/2424:2426, 1/5/2605:2608 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7ZUX_199 | 1/5/2445:2446, 1/5/2502:2504 | Minor groove platform | geometric IL_4R4V_001 IL_51454.2 | |
| IL_7ZUX_200 | 1/5/2521:2527, 1/5/2585:2588 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_7ZUX_201 | 1/5/2615:2616, 1/5/2626:2628 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_7ZUX_202 | 1/5/2667:2669, 1/5/2687:2691 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_7ZUX_203 | 1/5/2719:2722, 1/5/2736:2739 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_7ZUX_204 | 1/5/2771:2774, 1/5/2788:2789 | Single stack bend with bulge | homologous IL_8C3A_110 NA | |
| IL_7ZUX_205 | 1/5/2824:2825, 1/5/2866:2868 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_7ZUX_252 | 1/5/2824:2827, 1/5/2864:2868 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_7ZUX_206 | 1/5/2825:2827, 1/5/2864:2866 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_7ZUX_207 | 1/5/2827:2829, 1/5/2863:2864 | Major groove platform | homologous IL_5TBW_104 NA | |
| IL_7ZUX_208 | 1/5/2829:2831, 1/5/2859:2863 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_7ZUX_209 | 1/5/2836:2840, 1/5/2850:2854 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_7ZUX_210 | 1/5/2877:2878, 1/5/2950:2952 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_7ZUX_211 | 1/5/2880:2882, 1/5/2944:2948 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_7ZUX_212 | 1/5/2882:2883, 1/5/2941:2944 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_7ZUX_213 | 1/5/2890:2892, 1/5/2913:2915 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_7ZUX_253 | 1/5/2890:2893, 1/5/2910:2915 | No text annotation | homologous IL_8P9A_338 IL_07469.2 | |
| IL_7ZUX_214 | 1/5/2892:2893, 1/5/2910:2913 | Major groove platform with intercalation | geometric IL_5TBW_111 NA | |
| IL_7ZUX_215 | 1/5/2919:2921, 1/5/2927:2929 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_7ZUX_216 | 1/5/2961:2962, 1/5/2971:2973 | Single bulged A | geometric IL_1U9S_001 IL_31462.5 | |
| IL_7ZUX_217 | 1/5/3005:3008, 1/5/3140:3145 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_7ZUX_218 | 1/5/3013:3015, 1/5/3041:3043 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_7ZUX_219 | 1/5/3019:3026, 1/5/3031:3037 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_7ZUX_220 | 1/5/3048:3052, 1/5/3092:3095 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_7ZUX_221 | 1/5/3055:3060, 1/5/3085:3089 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_7ZUX_222 | 1/5/3064:3065, 1/5/3078:3081 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7ZUX_223 | 1/5/3104:3108, 1/5/3128:3132 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_7ZUX_224 | 1/5/3165:3167, 1/5/3285:3287 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_7ZUX_225 | 1/5/3169:3171, 1/5/3281:3283 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_7ZUX_226 | 1/5/3178:3180, 1/5/3211:3212 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_7ZUX_227 | 1/5/3180:3189, 1/5/3205:3211 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_7ZUX_228 | 1/5/3194:3195, 1/5/3198:3200 | Single bulged U | homologous IL_5TBW_125 NA | |
| IL_7ZUX_229 | 1/5/3226:3230, 1/5/3259:3261 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_7ZUX_230 | 1/5/3234:3236, 1/5/3253:3255 | Isolated non-canonical cWW pair | homologous IL_5TBW_127 NA | |
| IL_7ZUX_231 | 1/5/3236:3239, 1/5/3250:3253 | Tandem non-canonical cWW pairs | geometric IL_6MWN_005 IL_77658.1 | |
| IL_7ZUX_232 | 1/5/3301:3304, 1/5/3312:3315 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_7ZUX_233 | 1/5/3319:3321, 1/5/3388:3389 | Single bulged U | homologous IL_8C3A_136 NA | |
| IL_7ZUX_234 | 1/5/3325:3326, 1/5/3382:3384 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_7ZUX_235 | 1/5/3329:3331, 1/5/3374:3379 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7ZUX_236 | 1/5/3333:3338, 1/5/3368:3372 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_7ZUX_237 | 1/5/3341:3343, 1/5/3364:3365 | Single bulged U | geometric IL_3WBM_001 IL_89505.4 | |
| IL_7ZUX_238 | 1/5/3343:3346, 1/5/3361:3364 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_7ZUX_239 | 1/5/3350:3351, 1/5/3354:3357 | Multiple bulged bases | homologous IL_8C3A_142 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7ZUX_001 | Isolated non-canonical cWW pair | ||
| IL_7ZUX_041 | No text annotation | ||
| IL_7ZUX_044 | Tandem non-canonical cWW pairs | ||
| IL_7ZUX_084 | No text annotation | ||
| IL_7ZUX_090 | No text annotation | ||
| IL_7ZUX_246 | Isolated non-canonical cWW pair | ||
| IL_7ZUX_099 | No text annotation | ||
| IL_7ZUX_112 | Other IL | ||
| IL_7ZUX_114 | Major groove platform with extra pair | ||
| IL_7ZUX_118 | No text annotation | ||
| IL_7ZUX_148 | No text annotation | ||
| IL_7ZUX_163 | No text annotation | ||
| IL_7ZUX_248 | Partly complementary | ||
| IL_7ZUX_169 | No text annotation | ||
| IL_7ZUX_198 | Isolated cWS basepair | ||
| IL_7ZUX_251 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7ZUX_001 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation | geometric J3_4V88_078 NA | |
| J3_7ZUX_031 | 1/2/41:48, 1/2/431:439, 1/2/464:466 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_7ZUX_032 | 1/2/213:228, 1/2/237:243, 1/2/250:252 | No text annotation | ||
| J3_7ZUX_002 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_7ZUX_033 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_7ZUX_003 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_7ZUX_004 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_7ZUX_005 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_7ZUX_006 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation | homologous J3_4V88_035 NA | |
| J3_7ZUX_007 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation | homologous J3_4V88_036 NA | |
| J3_7ZUX_008 | 1/2/1180:1187, 1/2/1198:1209, 1/2/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_7ZUX_009 | 1/2/1215:1220, 1/2/1263:1267, 1/2/1442:1448 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_7ZUX_010 | 1/2/1283:1288, 1/2/1327:1332, 1/2/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_7ZUX_011 | 1/2/1293:1294, 1/2/1303:1306, 1/2/1318:1322 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_7ZUX_012 | 1/2/1336:1338, 1/2/1386:1389, 1/2/1412:1415 | No text annotation | homologous J3_4V88_040 NA | |
| J3_7ZUX_034 | 1/2/1336:1338, 1/2/1386:1391, 1/2/1407:1415 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_7ZUX_013 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_7ZUX_014 | 1/3/19:20, 1/5/369:376, 1/5/403:404 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7ZUX_036 | 1/3/19:20, 1/5/369:379, 1/5/390:404 | No text annotation | geometric J3_5TBW_062 NA | |
| J3_7ZUX_037 | 1/3/21:24, 1/5/340:356, 1/5/363:368 | No text annotation | geometric J3_8C3A_047 NA | |
| J3_7ZUX_038 | 1/3/44:45, 1/3/58:64, 1/3/96:100 | No text annotation | homologous J3_8P9A_067 J3_35667.2 | |
| J3_7ZUX_015 | 1/4/9:14, 1/4/66:67, 1/4/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_7ZUX_016 | 1/5/113:123, 1/5/149:158, 1/5/263:267 | No text annotation | homologous J3_8P9A_042 J3_19664.1 | |
| J3_7ZUX_039 | 1/5/113:124, 1/5/144:158, 1/5/263:267 | No text annotation | ||
| J3_7ZUX_040 | 1/5/185:189, 1/5/205:214, 1/5/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
| J3_7ZUX_017 | 1/5/503:504, 1/5/589:598, 1/5/607:612 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_7ZUX_018 | 1/5/815:821, 1/5/906:908, 1/5/924:927 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7ZUX_019 | 1/5/829:832, 1/5/864:868, 1/5/893:898 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_7ZUX_020 | 1/5/987:988, 1/5/1063:1067, 1/5/1093:1099 | No text annotation | homologous J3_5TBW_006 NA | |
| J3_7ZUX_046 | 1/5/1230:1233, 1/5/1257:1267, 1/5/1276:1281 | No text annotation | ||
| J3_7ZUX_021 | 1/5/1231:1233, 1/5/1257:1267, 1/5/1276:1281 | No text annotation | ||
| J3_7ZUX_022 | 1/5/1480:1486, 1/5/1858:1860, 1/5/1872:1875 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7ZUX_023 | 1/5/1489:1492, 1/5/1838:1844, 1/5/1853:1855 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_7ZUX_024 | 1/5/1527:1532, 1/5/1592:1596, 1/5/1613:1614 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_7ZUX_042 | 1/5/1538:1543, 1/5/1552:1561, 1/5/1580:1585 | No text annotation | ||
| J3_7ZUX_025 | 1/5/1632:1633, 1/5/1642:1646, 1/5/1811:1812 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7ZUX_043 | 1/5/1655:1659, 1/5/1792:1793, 1/5/1797:1802 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_7ZUX_026 | 1/5/2433:2436, 1/5/2513:2517, 1/5/2592:2598 | No text annotation | geometric J3_4V9F_007 J3_97609.1 | |
| J3_7ZUX_027 | 1/5/2530:2533, 1/5/2548:2564, 1/5/2579:2582 | No text annotation | homologous J3_8P9A_060 J3_28639.1 | |
| J3_7ZUX_044 | 1/5/2652:2654, 1/5/2755:2766, 1/5/2794:2799 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7ZUX_028 | 1/5/2665:2667, 1/5/2691:2693, 1/5/2702:2707 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_7ZUX_029 | 1/5/2887:2890, 1/5/2915:2917, 1/5/2931:2937 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7ZUX_045 | 1/5/3172:3177, 1/5/3213:3221, 1/5/3266:3280 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_7ZUX_030 | 1/5/3299:3301, 1/5/3315:3319, 1/5/3389:3391 | No text annotation | homologous J3_5TBW_015 NA | |
| J4_7ZUX_001 | 1/2/99:107, 1/2/307:309, 1/2/357:361, 1/2/383:384 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_7ZUX_002 | 1/2/622:624, 1/2/975:980, 1/2/1021:1032, 1/2/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_7ZUX_003 | 1/5/112:113, 1/5/267:272, 1/5/293:299, 1/5/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_7ZUX_004 | 1/5/185:189, 1/5/205:208, 1/5/212:214, 1/5/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_7ZUX_005 | 1/5/1452:1458, 1/5/1476:1477, 1/5/1878:1881, 1/5/2353:2354 | No text annotation | homologous J4_8P9A_014 J4_87855.1 | |
| J4_7ZUX_006 | 1/5/1493:1497, 1/5/1521:1526, 1/5/1615:1616, 1/5/1830:1837 | No text annotation | homologous J4_8P9A_015 J4_69051.6 | |
| J4_7ZUX_007 | 1/5/1675:1676, 1/5/1694:1695, 1/5/1753:1754, 1/5/1773:1774 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_7ZUX_008 | 1/5/2131:2135, 1/5/2147:2151, 1/5/2187:2191, 1/5/2318:2323 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_7ZUX_009 | 1/5/2193:2195, 1/5/2249:2251, 1/5/2267:2277, 1/5/2311:2316 | No text annotation | ||
| J4_7ZUX_014 | 1/5/2655:2659, 1/5/2713:2717, 1/5/2741:2743, 1/5/2752:2754 | No text annotation | homologous J4_8P9A_019 J4_04930.6 | |
| J4_7ZUX_011 | 1/5/3011:3013, 1/5/3043:3044, 1/5/3099:3101, 1/5/3135:3137 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
| J4_7ZUX_012 | 1/6/7:10, 1/6/25:27, 1/6/43:49, 1/6/65:66 | tRNA junction | homologous J4_1IL2_001 J4_70449.27 | |
| J4_7ZUX_013 | 1/7/7:10, 1/7/26:28, 1/7/44:50, 1/7/66:67 | No text annotation | homologous J4_6UFG_001 J4_70449.27 | |
| J5_7ZUX_001 | 1/2/31:35, 1/2/473:479, 1/2/509:514, 1/2/543:546, 1/2/592:595 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_7ZUX_002 | 1/2/54:57, 1/2/90:97, 1/2/386:388, 1/2/409:411, 1/2/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_7ZUX_003 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:265, 1/2/289:293 | No text annotation | ||
| J5_7ZUX_004 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:267, 1/2/288:293 | No text annotation | ||
| J5_7ZUX_005 | 1/3/35:42, 1/3/102:107, 1/3/115:116, 1/3/137:139, 1/5/20:22 | No text annotation | ||
| J5_7ZUX_006 | 1/5/659:664, 1/5/800:803, 1/5/942:945, 1/5/1376:1377, 1/5/1432:1438 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_7ZUX_007 | 1/5/676:679, 1/5/703:707, 1/5/714:722, 1/5/750:752, 1/5/783:788 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_7ZUX_008 | 1/5/1907:1915, 1/5/1939:1940, 1/5/2110:2111, 1/5/2115:2123, 1/5/2332:2334 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
| J5_7ZUX_009 | 1/5/2400:2407, 1/5/2816:2824, 1/5/2868:2877, 1/5/2952:2958, 1/5/2976:2981 | No text annotation | ||
| J5_7ZUX_010 | 1/5/2417:2420, 1/5/2612:2615, 1/5/2628:2629, 1/5/2651:2652, 1/5/2799:2805 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J6_7ZUX_001 | 1/3/32:35, 1/5/22:27, 1/5/58:68, 1/5/75:79, 1/5/106:110, 1/5/321:331 | No text annotation | ||
| J6_7ZUX_002 | 1/5/2417:2420, 1/5/2612:2615, 1/5/2628:2629, 1/5/2651:2654, 1/5/2755:2766, 1/5/2794:2805 | No text annotation | ||
| J7_7ZUX_001 | 1/5/950:955, 1/5/968:969, 1/5/1115:1118, 1/5/1142:1147, 1/5/1158:1162, 1/5/1339:1340, 1/5/1366:1371 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7ZUX_035 | No text annotation | ||
| J3_7ZUX_041 | No text annotation | ||
| J4_7ZUX_010 | No text annotation |
Coloring options: