Valid loops

#loop idlocationannotationmotif
11/AA/24:30,1/AA/510:516NANA
21/AA/36:37,1/AA/442:444NANA
31/AA/42:44,1/AA/433:436NANA
41/AA/81:85,1/AA/97:105NANA
51/AA/183:184,1/AA/212:214NANA
61/AA/188:194,1/AA/201:208NANA
71/AA/239:245,1/AA/253:258NANA
81/AA/272D:272E,1/AA/363E:364NANA
91/AA/272J:280,1/AA/360:363NANA
101/AA/280:285,1/AA/356:360NANA
111/AA/288:290,1/AA/350:353NANA
121/AA/293:295,1/AA/343:347NANA
131/AA/481:484,1/AA/496:509NANA
141/AA/564:566,1/AA/575:577NANA
151/AA/606:610,1/AA/618:622NANA
161/AA/672:674,1/AA/806:808NANA
171/AA/674:678,1/AA/799:806NANA
181/AA/697:698,1/AA/763:765NANA
191/AA/702:703,1/AA/728:730NANA
201/AA/703:707,1/AA/724:728NANA
211/AA/707:709,1/AA/722:724NANA
221/AA/738:741,1/AA/756:758NANA
231/AA/775:777,1/AA/787:791NANA
241/AA/837:838,1/AA/940:942NANA
251/AA/844:846,1/AA/931:934NANA
261/AA/846:850,1/AA/927:931NANA
271/AA/857:862,1/AA/915:920NANA
281/AA/862:863,1/AA/913:915NANA
291/AA/864:868,1/AA/909:912NANA
301/AA/870:872,1/AA/905:907NANA
311/AA/875:877,1/AA/899:902NANA
321/AA/877:881,1/AA/895:899NANA
331/AA/881:883,1/AA/893:895NANA
341/AA/952:954,1/AA/963:965NANA
351/AA/994:996,1/AA/1159:1160NANA
361/AA/998:1002,1/AA/1153:1157NANA
371/AA/1004:1011,1/AA/1150:1151NANA
381/AA/1011:1013,1/AA/1149:1150NANA
391/AA/1018:1024,1/AA/1140:1144NANA
401/AA/1024:1030,1/AA/1124:1140NANA
411/AA/1031:1034,1/AA/1121:1123NANA
421/AA/1196:1198,1/AA/1247:1250NANA
431/AA/1202:1206,1/AA/1240:1243NANA
441/AA/1208:1215,1/AA/1234:1238NANA
451/AA/1219:1221,1/AA/1229:1230NANA
461/AA/1262:1269,1/AA/2011:2017NANA
471/AA/1310:1313,1/AA/1603:1604NANA
481/AA/1319:1323,1/AA/1331:1333NANA
491/AA/1351:1355,1/AA/1376:1380NANA
501/AA/1357:1361,1/AA/1370:1374NANA
511/AA/1415:1416,1/AA/1582:1587NANA
521/AA/1417:1421,1/AA/1577:1581NANA
531/AA/1433:1435,1/AA/1557:1560NANA
541/AA/1437:1440,1/AA/1551:1555NANA
551/AA/1448:1450,1/AA/1462:1463NANA
561/AA/1469:1473,1/AA/1518:1523NANA
571/AA/1479:1482,1/AA/1506:1512NANA
581/AA/1489:1491,1/AA/1499:1500NANA
591/AA/1526:1530,1/AA/1539:1546NANA
601/AA/1651:1656,1/AA/2004:2006NANA
611/AA/1663:1665,1/AA/1995:1997NANA
621/AA/1666:1669,1/AA/1993:1994NANA
631/AA/1669:1674,1/AA/1990:1993NANA
641/AA/1686:1691,1/AA/1696:1702NANA
651/AA/1770:1771,1/AA/1980:1982NANA
661/AA/1798:1804,1/AA/1813:1821NANA
671/AA/1837:1840,1/AA/1902:1903NANA
681/AA/1841:1842,1/AA/1898:1901NANA
691/AA/1846:1849,1/AA/1893:1894NANA
701/AA/1851:1855,1/AA/1887:1891NANA
711/AA/1856:1860,1/AA/1882:1886NANA
721/AA/1933:1934,1/AA/1964:1967NANA
731/AA/1934:1945,1/AA/1961:1964NANA
741/AA/2050:2052,1/AA/2617:2618NANA
751/AA/2054:2057,1/AA/2611:2615NANA
761/AA/2067:2069,1/AA/2442:2443NANA
771/AA/2070:2071,1/AA/2438:2441NANA
781/AA/2081:2083,1/AA/2236:2239NANA
791/AA/2085:2087,1/AA/2232:2234NANA
801/AA/2096:2098,1/AA/2191:2193NANA
811/AA/2098:2101,1/AA/2188:2191NANA
821/AA/2101:2105,1/AA/2184:2188NANA
831/AA/2297:2299,1/AA/2317:2321NANA
841/AA/2350:2353,1/AA/2364:2367NANA
851/AA/2401:2403,1/AA/2414:2415NANA
861/AA/2453:2454,1/AA/2498:2500NANA
871/AA/2454:2455,1/AA/2496:2498NANA
881/AA/2456:2459,1/AA/2493:2495NANA
891/AA/2459:2461,1/AA/2489:2493NANA
901/AA/2466:2470,1/AA/2480:2484NANA
911/AA/2507:2508,1/AA/2580:2582NANA
921/AA/2510:2512,1/AA/2574:2578NANA
931/AA/2512:2513,1/AA/2571:2574NANA
941/AA/2522:2523,1/AA/2540:2543NANA
951/AA/2591:2592,1/AA/2601:2603NANA
961/AA/2636:2640,1/AA/2774:2782NANA
971/AA/2652:2658,1/AA/2663:2668NANA
981/AA/2680:2684,1/AA/2725:2727NANA
991/AA/2687:2691,1/AA/2718:2722NANA
1001/AA/2695:2696,1/AA/2711:2714NANA
1011/AA/2737:2742,1/AA/2762:2767NANA
1021/AA/2838:2839,1/AA/2878:2880NANA
1031/AA/2843:2846,1/AA/2870:2874NANA
1041/AA/2847:2852,1/AA/2865:2869NANA
1051/AB/20:22,1/AB/61:63NANA
1061/AB/23:28,1/AB/56:60NANA
1071/AB/30:31,1/AB/51:54NANA
1081/AB/34:38,1/AB/44:48NANA
1091/AB/71:79,1/AB/98:106NANA
1101/AB/80:82,1/AB/95:97NANA
1111/BA/30:32,1/BA/552:553NANA
1121/BA/44:45,1/BA/396:398NANA
1131/BA/47:52,1/BA/359:361NANA
1141/BA/54:57,1/BA/355:357NANA
1151/BA/63:66,1/BA/103:104NANA
1161/BA/67:69,1/BA/100:102NANA
1171/BA/70:72,1/BA/97:99NANA
1181/BA/129:131,1/BA/231:232NANA
1191/BA/132:136,1/BA/227:230NANA
1201/BA/148:153,1/BA/168:174NANA
1211/BA/186:188,1/BA/189L:191NANA
1221/BA/242:247,1/BA/277:284NANA
1231/BA/249:252,1/BA/274:275NANA
1241/BA/292:293,1/BA/304:308NANA
1251/BA/367:369,1/BA/392:393NANA
1261/BA/371:375,1/BA/389:390NANA
1271/BA/375:376,1/BA/387:389NANA
1281/BA/409:416,1/BA/427:433NANA
1291/BA/446:450,1/BA/483:488NANA
1301/BA/504:511,1/BA/540:541NANA
1311/BA/515:521,1/BA/528:536NANA
1321/BA/569:575,1/BA/880:881NANA
1331/BA/580:584,1/BA/757:761NANA
1341/BA/594:596,1/BA/644:645NANA
1351/BA/597:598,1/BA/640:643NANA
1361/BA/605:612,1/BA/628:633NANA
1371/BA/654:655,1/BA/751:754NANA
1381/BA/657:658,1/BA/747:749NANA
1391/BA/662:666,1/BA/740:743NANA
1401/BA/673:678,1/BA/712:717NANA
1411/BA/683:688,1/BA/699:707NANA
1421/BA/774:778,1/BA/804:805NANA
1431/BA/779:783,1/BA/799:803NANA
1441/BA/887:894,1/BA/905:910NANA
1451/BA/922:923,1/BA/1393:1395NANA
1461/BA/925:927,1/BA/1390:1391NANA
1471/BA/933:935,1/BA/1380:1384NANA
1481/BA/952:954,1/BA/1226:1229NANA
1491/BA/993:997,1/BA/1044:1045NANA
1501/BA/1000:1008,1/BA/1021:1041NANA
1511/BA/1008:1011,1/BA/1018:1021NANA
1521/BA/1048:1050,1/BA/1208:1209NANA
1531/BA/1052:1056,1/BA/1204:1206NANA
1541/BA/1057:1058,1/BA/1199:1203NANA
1551/BA/1060:1061,1/BA/1195:1197NANA
1561/BA/1061:1063,1/BA/1193:1195NANA
1571/BA/1124:1128,1/BA/1143:1149NANA
1581/BA/1158:1161,1/BA/1175:1181NANA
1591/BA/1247:1253,1/BA/1284:1290NANA
1601/BA/1255:1258,1/BA/1277:1282NANA
1611/BA/1259:1262,1/BA/1273:1276NANA
1621/BA/1303:1309,1/BA/1328:1334NANA
1631/BA/1399:1401,1/BA/1501:1504NANA
1641/BA/1401:1404,1/BA/1497:1501NANA
1651/BA/1405:1407,1/BA/1494:1496NANA
1661/BA/1407:1409,1/BA/1491:1494NANA
1671/BA/1409:1412,1/BA/1488:1491NANA
1681/BA/1412:1414,1/BA/1486:1488NANA
1691/BA/1416:1419,1/BA/1481:1484NANA
1701/BA/1431:1435,1/BA/1466:1469NANA
1711/BA/1435:1437,1/BA/1464:1466NANA
1721/BA/1440:1443,1/BA/1459:1461NANA
1731/BY/20:22,1/BY/56:58NAIL_01312.13

Problematic loops

#loop idProblemSequence
1NA
2NA
3NA
4NA
5NA
6NA
7NA
8NA
9NA
10NA
11NA
12NA
13NA
14NA
15NA

Valid loops

#loop idlocationannotationmotif
11/AA/59:68NANA
21/AA/87:95NANA
31/AA/123:128NANA
41/AA/139:142ANANA
51/AA/154A:171NANA
61/AA/194:201NANA
71/AA/225:230NANA
81/AA/246:252NANA
91/AA/271H:271PNANA
101/AA/305:312NANA
111/AA/319:323NANA
121/AA/327:335NANA
131/AA/382:392NANA
141/AA/410:417NANA
151/AA/462:467NANA
161/AA/487:493NANA
171/AA/543:549NANA
181/AA/566:575NANA
191/AA/612:615NANA
201/AA/629:634NANA
211/AA/641:647NANA
221/AA/712:719NANA
231/AA/744:753NANA
241/AA/779:785NANA
251/AA/826:831NANA
261/AA/883:893NANA
271/AA/955:962NANA
281/AA/978:985NANA
291/AA/1055:1104NANA
301/AA/1170:1179NANA
311/AA/1222:1227NANA
321/AA/1281:1289NANA
331/AA/1324:1330NANA
341/AA/1363:1368NANA
351/AA/1389:1398NANA
361/AA/1450A:1461NANA
371/AA/1492:1498NANA
381/AA/1532:1537NANA
391/AA/1565:1568NANA
401/AA/1612:1619NANA
411/AA/1631:1635NANA
421/AA/1691:1696NANA
431/AA/1718:1744NANA
441/AA/1752:1756NANA
451/AA/1777:1787NANA
461/AA/1806:1811NANA
471/AA/1864:1878NANA
481/AA/1910:1920NANA
491/AA/1949:1957NANA
501/AA/2027:2036NANA
511/AA/2205:2219NANA
521/AA/2248:2256NANA
531/AA/2264:2276NANA
541/AA/2303:2313NANA
551/AA/2324:2331NANA
561/AA/2355:2362NANA
571/AA/2374:2379NANA
581/AA/2404:2413NANA
591/AA/2471:2479NANA
601/AA/2528:2535NANA
611/AA/2551:2557NANA
621/AA/2594:2599NANA
631/AA/2658:2663NANA
641/AA/2701:2706NANA
651/AA/2745:2759NANA
661/AA/2819:2827NANA
671/AA/2856:2861NANA
681/AB/38:44NANA
691/AB/86:91NANA
701/BA/12:22NANA
711/BA/72:97NANA
721/BA/158:163NANA
731/BA/189B:189INANA
741/BA/200:217NANA
751/BA/259:267NANA
761/BA/296:301NANA
771/BA/320:333NANA
781/BA/342:347NANA
791/BA/379:384NANA
801/BA/418:425NANA
811/BA/458:473NANA
821/BA/522:527NANA
831/BA/617:623NANA
841/BA/689:698NANA
851/BA/726:731NANA
861/BA/786:796NANA
871/BA/837:849NANA
881/BA/862:867NANA
891/BA/897:902NANA
901/BA/963:972NANA
911/BA/1012:1017NANA
921/BA/1076:1081NANA
931/BA/1089:1096NANA
941/BA/1128:1143NANA
951/BA/1165:1171NANA
961/BA/1265:1270NANA
971/BA/1314:1323NANA
981/BA/1356:1366NANA
991/BA/1445:1457NANA
1001/BA/1515:1520NANA
1011/BV/13:23NANA
1021/BV/32:40NANA
1031/BV/54:62NANA
1041/BY/66:74T-loop with 2 stacked bulged basesHL_33239.17

Problematic loops

#loop idProblemSequence
1NA
2NA
3NA
4NA
5NA
6NA

Valid loops

#loop idlocationannotationmotif
11/AA/683:689,1/AA/773:775,1/AA/791:794NANA
21/AA/698:700,1/AA/732:736,1/AA/760:763NANA
31/AA/1298:1303,1/AA/1625:1627,1/AA/1639:1642NANA
41/AA/1306:1309,1/AA/1605:1611,1/AA/1620:1622NANA
51/AA/2091:2093,1/AA/2196:2200,1/AA/2223:2228NANA
61/AA/2295:2297,1/AA/2321:2323,1/AA/2332:2337NANA
71/AA/2517:2520,1/AA/2545:2547,1/AA/2561:2567NANA
81/AB/11:18,1/AB/65:70,1/AB/107:110NANA
91/BA/826:829,1/BA/857:861,1/BA/868:874NANA
101/BA/936:939,1/BA/1344:1350,1/BA/1372:1379NANA
111/BA/943:946,1/BA/1235:1237,1/BA/1337:1340NANA
121/BA/955:962,1/BA/973:984,1/BA/1221:1225NANA
131/BA/990:993,1/BA/1045:1047,1/BA/1210:1215NANA
141/BA/1063:1068,1/BA/1107:1113,1/BA/1187:1193NANA
151/BA/1116:1118,1/BA/1155:1158,1/BA/1181:1184NANA
161/BA/1237:1241,1/BA/1296:1303,1/BA/1334:1337NANA

Problematic loops

No problematic loops


Coloring options: