4V8Q Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V8Q_001 | 1/AA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V8Q_002 | 1/AA/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_4V8Q_003 | 1/AA/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_4V8Q_004 | 1/AA/139:142A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4V8Q_005 | 1/AA/154A:171 | GNRA | homologous HL_7A0S_005 HL_37824.7 | |
| HL_4V8Q_006 | 1/AA/194:201 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_4V8Q_007 | 1/AA/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4V8Q_008 | 1/AA/246:252 | No text annotation | homologous HL_4WF9_008 HL_37369.2 | |
| HL_4V8Q_009 | 1/AA/271H:271P | No text annotation | geometric HL_7A0S_011 HL_75660.5 | |
| HL_4V8Q_010 | 1/AA/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4V8Q_011 | 1/AA/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_4V8Q_012 | 1/AA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_4V8Q_111 | 1/AA/383:391 | No text annotation | ||
| HL_4V8Q_014 | 1/AA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V8Q_015 | 1/AA/462:467 | GNRA | homologous HL_5J7L_147 HL_37824.7 | |
| HL_4V8Q_016 | 1/AA/487:493 | GNRA | homologous HL_4WF9_016 HL_37824.7 | |
| HL_4V8Q_017 | 1/AA/543:549 | GNRA | geometric HL_4LFB_019 HL_37824.7 | |
| HL_4V8Q_018 | 1/AA/566:575 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_4V8Q_019 | 1/AA/612:615 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4V8Q_020 | 1/AA/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4V8Q_021 | 1/AA/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_4V8Q_022 | 1/AA/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4V8Q_023 | 1/AA/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4V8Q_024 | 1/AA/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4V8Q_025 | 1/AA/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_4V8Q_026 | 1/AA/883:893 | No text annotation | ||
| HL_4V8Q_027 | 1/AA/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4V8Q_028 | 1/AA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V8Q_118 | 1/AA/1064:1074 | No text annotation | ||
| HL_4V8Q_113 | 1/AA/1171:1178 | No text annotation | geometric HL_4KR9_003 HL_70782.2 | |
| HL_4V8Q_031 | 1/AA/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V8Q_032 | 1/AA/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4V8Q_033 | 1/AA/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4V8Q_034 | 1/AA/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4V8Q_035 | 1/AA/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4V8Q_036 | 1/AA/1450A:1461 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
| HL_4V8Q_037 | 1/AA/1492:1498 | No text annotation | ||
| HL_4V8Q_038 | 1/AA/1532:1537 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_4V8Q_039 | 1/AA/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4V8Q_040 | 1/AA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V8Q_041 | 1/AA/1631:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4V8Q_042 | 1/AA/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_4V8Q_043 | 1/AA/1718:1744 | No text annotation | ||
| HL_4V8Q_044 | 1/AA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V8Q_045 | 1/AA/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_4V8Q_046 | 1/AA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V8Q_047 | 1/AA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4V8Q_048 | 1/AA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V8Q_049 | 1/AA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V8Q_050 | 1/AA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V8Q_052 | 1/AA/2205:2219 | No text annotation | geometric HL_5TBW_004 NA | |
| HL_4V8Q_053 | 1/AA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4V8Q_054 | 1/AA/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4V8Q_119 | 1/AA/2304:2312 | No text annotation | ||
| HL_4V8Q_056 | 1/AA/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V8Q_057 | 1/AA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V8Q_058 | 1/AA/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4V8Q_059 | 1/AA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4V8Q_060 | 1/AA/2471:2479 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_4V8Q_061 | 1/AA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V8Q_062 | 1/AA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V8Q_063 | 1/AA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V8Q_064 | 1/AA/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.7 | |
| HL_4V8Q_065 | 1/AA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V8Q_066 | 1/AA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4V8Q_068 | 1/AA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V8Q_069 | 1/AA/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4V8Q_115 | 1/AB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_4V8Q_070 | 1/AB/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_4V8Q_071 | 1/AB/86:91 | GNRA | homologous HL_7RQB_071 NA | |
| HL_4V8Q_072 | 1/BA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4V8Q_116 | 1/BA/70:99 | No text annotation | ||
| HL_4V8Q_073 | 1/BA/72:97 | No text annotation | ||
| HL_4V8Q_074 | 1/BA/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_4V8Q_075 | 1/BA/189B:189I | No text annotation | geometric HL_2Y9H_005 HL_86870.1 | |
| HL_4V8Q_117 | 1/BA/201:216 | Mini UNCG | homologous HL_6CZR_234 NA | |
| HL_4V8Q_077 | 1/BA/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_4V8Q_078 | 1/BA/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_4V8Q_079 | 1/BA/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_4V8Q_080 | 1/BA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_4V8Q_081 | 1/BA/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_4V8Q_120 | 1/BA/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_4V8Q_083 | 1/BA/458:473 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_4V8Q_084 | 1/BA/522:527 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_4V8Q_085 | 1/BA/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_4V8Q_086 | 1/BA/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_4V8Q_087 | 1/BA/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_4V8Q_088 | 1/BA/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4V8Q_089 | 1/BA/837:849 | No text annotation | geometric HL_4V88_197 NA | |
| HL_4V8Q_090 | 1/BA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_4V8Q_091 | 1/BA/897:902 | GNRA | homologous HL_6CZR_091 NA | |
| HL_4V8Q_092 | 1/BA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4V8Q_093 | 1/BA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_4V8Q_094 | 1/BA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_4V8Q_095 | 1/BA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4V8Q_096 | 1/BA/1128:1143 | No text annotation | ||
| HL_4V8Q_097 | 1/BA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_4V8Q_098 | 1/BA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_4V8Q_099 | 1/BA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4V8Q_100 | 1/BA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V8Q_101 | 1/BA/1445:1457 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_4V8Q_102 | 1/BA/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_4V8Q_103 | 1/BV/13:23 | tRNA D-loop | homologous HL_4TUE_033 HL_93616.2 | |
| HL_4V8Q_104 | 1/BV/32:40 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.5 | |
| HL_4V8Q_105 | 1/BV/54:62 | T-loop with 2 stacked bulged bases | homologous HL_5HR7_006 HL_28252.6 | |
| HL_4V8Q_110 | 1/BY/66:74 | T-loop with 2 stacked bulged bases HL_28252.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V8Q_013 | No text annotation | ||
| HL_4V8Q_029 | No text annotation | ||
| HL_4V8Q_112 | No text annotation | ||
| HL_4V8Q_030 | No text annotation | ||
| HL_4V8Q_114 | No text annotation | ||
| HL_4V8Q_051 | No text annotation | ||
| HL_4V8Q_055 | No text annotation | ||
| HL_4V8Q_067 | No text annotation | ||
| HL_4V8Q_076 | No text annotation | ||
| HL_4V8Q_082 | No text annotation | ||
| HL_4V8Q_106 | No text annotation | ||
| HL_4V8Q_107 | No text annotation | ||
| HL_4V8Q_108 | T-loop with 2 stacked bulged bases | ||
| HL_4V8Q_109 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V8Q_001 | 1/AA/24:30, 1/AA/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4V8Q_002 | 1/AA/36:37, 1/AA/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4V8Q_189 | 1/AA/42:43, 1/AA/434:436 | Minor groove platform | homologous IL_7A0S_003 IL_51454.2 | |
| IL_4V8Q_004 | 1/AA/81:85, 1/AA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V8Q_005 | 1/AA/183:184, 1/AA/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4V8Q_006 | 1/AA/188:194, 1/AA/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_4V8Q_007 | 1/AA/239:245, 1/AA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4V8Q_008 | 1/AA/272D:272E, 1/AA/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4V8Q_209 | 1/AA/272J:278, 1/AA/362:363 | No text annotation | ||
| IL_4V8Q_210 | 1/AA/280:284, 1/AA/357:360 | No text annotation | homologous IL_9DFE_009 IL_99646.2 | |
| IL_4V8Q_011 | 1/AA/288:290, 1/AA/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4V8Q_012 | 1/AA/293:295, 1/AA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V8Q_013 | 1/AA/481:484, 1/AA/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4V8Q_014 | 1/AA/564:566, 1/AA/575:577 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 IL_07785.1 | |
| IL_4V8Q_015 | 1/AA/606:610, 1/AA/618:622 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_4V8Q_016 | 1/AA/672:674, 1/AA/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4V8Q_017 | 1/AA/674:678, 1/AA/799:806 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_54041.2 | |
| IL_4V8Q_018 | 1/AA/697:698, 1/AA/763:765 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_4V8Q_019 | 1/AA/702:703, 1/AA/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_4V8Q_020 | 1/AA/703:707, 1/AA/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_4V8Q_022 | 1/AA/738:741, 1/AA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4V8Q_023 | 1/AA/775:777, 1/AA/787:791 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_4V8Q_024 | 1/AA/837:838, 1/AA/940:942 | Single stack bend | homologous IL_4WF9_028 IL_90729.1 | |
| IL_4V8Q_025 | 1/AA/844:846, 1/AA/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4V8Q_190 | 1/AA/844:850, 1/AA/927:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_4V8Q_026 | 1/AA/846:850, 1/AA/927:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_4V8Q_191 | 1/AA/858:862, 1/AA/915:919 | No text annotation | homologous IL_7A0S_111 IL_38862.4 | |
| IL_4V8Q_028 | 1/AA/862:863, 1/AA/913:915 | Minor groove platform | homologous IL_7A0S_028 IL_51454.2 | |
| IL_4V8Q_029 | 1/AA/864:868, 1/AA/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4V8Q_030 | 1/AA/870:872, 1/AA/905:907 | Isolated cWS basepair | homologous IL_7RQB_030 NA | |
| IL_4V8Q_031 | 1/AA/875:877, 1/AA/899:902 | Minor groove platform with extra cWW | homologous IL_7RQB_031 NA | |
| IL_4V8Q_032 | 1/AA/877:881, 1/AA/895:899 | No text annotation | ||
| IL_4V8Q_034 | 1/AA/952:954, 1/AA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V8Q_035 | 1/AA/994:996, 1/AA/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_4V8Q_036 | 1/AA/998:1002, 1/AA/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4V8Q_037 | 1/AA/1004:1011, 1/AA/1150:1151 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_4V8Q_038 | 1/AA/1011:1013, 1/AA/1149:1150 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_4V8Q_039 | 1/AA/1018:1024, 1/AA/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_4V8Q_040 | 1/AA/1024:1030, 1/AA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V8Q_041 | 1/AA/1031:1034, 1/AA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4V8Q_211 | 1/AA/1038:1053, 1/AA/1106:1117 | No text annotation | ||
| IL_4V8Q_212 | 1/AA/1055:1063, 1/AA/1075:1104 | No text annotation | ||
| IL_4V8Q_042 | 1/AA/1196:1198, 1/AA/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4V8Q_043 | 1/AA/1202:1206, 1/AA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V8Q_044 | 1/AA/1208:1215, 1/AA/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V8Q_045 | 1/AA/1219:1221, 1/AA/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4V8Q_046 | 1/AA/1262:1269, 1/AA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V8Q_047 | 1/AA/1310:1313, 1/AA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V8Q_048 | 1/AA/1319:1323, 1/AA/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4V8Q_049 | 1/AA/1351:1355, 1/AA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V8Q_050 | 1/AA/1357:1361, 1/AA/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4V8Q_052 | 1/AA/1415:1416, 1/AA/1582:1587 | No text annotation | homologous IL_9DFE_053 IL_00881.1 | |
| IL_4V8Q_053 | 1/AA/1417:1421, 1/AA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4V8Q_054 | 1/AA/1433:1435, 1/AA/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4V8Q_055 | 1/AA/1437:1440, 1/AA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V8Q_056 | 1/AA/1448:1450, 1/AA/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4V8Q_057 | 1/AA/1469:1473, 1/AA/1518:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_4V8Q_058 | 1/AA/1479:1482, 1/AA/1506:1512 | No text annotation | ||
| IL_4V8Q_060 | 1/AA/1489:1491, 1/AA/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.5 | |
| IL_4V8Q_213 | 1/AA/1526:1529, 1/AA/1540:1546 | No text annotation | homologous IL_9DFE_062 IL_09044.1 | |
| IL_4V8Q_062 | 1/AA/1651:1656, 1/AA/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_4V8Q_063 | 1/AA/1663:1665, 1/AA/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_4V8Q_064 | 1/AA/1666:1669, 1/AA/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_4V8Q_195 | 1/AA/1666:1674, 1/AA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_4V8Q_065 | 1/AA/1669:1674, 1/AA/1990:1993 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_4V8Q_066 | 1/AA/1686:1691, 1/AA/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_4V8Q_067 | 1/AA/1770:1771, 1/AA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V8Q_068 | 1/AA/1798:1804, 1/AA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V8Q_069 | 1/AA/1837:1840, 1/AA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_4V8Q_070 | 1/AA/1841:1842, 1/AA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_4V8Q_071 | 1/AA/1846:1849, 1/AA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V8Q_072 | 1/AA/1851:1855, 1/AA/1887:1891 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_4V8Q_073 | 1/AA/1856:1860, 1/AA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V8Q_074 | 1/AA/1933:1934, 1/AA/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.3 | |
| IL_4V8Q_075 | 1/AA/1934:1945, 1/AA/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_4V8Q_076 | 1/AA/2050:2052, 1/AA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4V8Q_077 | 1/AA/2054:2057, 1/AA/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_4V8Q_078 | 1/AA/2067:2069, 1/AA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4V8Q_079 | 1/AA/2070:2071, 1/AA/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4V8Q_080 | 1/AA/2081:2083, 1/AA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V8Q_081 | 1/AA/2085:2087, 1/AA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4V8Q_199 | 1/AA/2123:2136, 1/AA/2155:2174 | No text annotation | ||
| IL_4V8Q_092 | 1/AA/2297:2299, 1/AA/2317:2321 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_4V8Q_093 | 1/AA/2350:2353, 1/AA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V8Q_094 | 1/AA/2401:2403, 1/AA/2414:2415 | Single bulged U | homologous IL_5J7L_334 IL_89505.4 | |
| IL_4V8Q_095 | 1/AA/2453:2454, 1/AA/2498:2500 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_4V8Q_096 | 1/AA/2454:2455, 1/AA/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4V8Q_200 | 1/AA/2457:2459, 1/AA/2493:2494 | Major groove platform | homologous IL_9DFE_093 IL_48076.6 | |
| IL_4V8Q_098 | 1/AA/2459:2461, 1/AA/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_4V8Q_099 | 1/AA/2466:2470, 1/AA/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_4V8Q_100 | 1/AA/2507:2508, 1/AA/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
| IL_4V8Q_101 | 1/AA/2510:2512, 1/AA/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_4V8Q_102 | 1/AA/2512:2513, 1/AA/2571:2574 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_4V8Q_103 | 1/AA/2522:2523, 1/AA/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_4V8Q_105 | 1/AA/2591:2592, 1/AA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V8Q_106 | 1/AA/2636:2640, 1/AA/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4V8Q_107 | 1/AA/2652:2658, 1/AA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_4V8Q_108 | 1/AA/2680:2684, 1/AA/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4V8Q_109 | 1/AA/2687:2691, 1/AA/2718:2722 | No text annotation | homologous IL_9DFE_104 IL_23774.1 | |
| IL_4V8Q_110 | 1/AA/2695:2696, 1/AA/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_4V8Q_111 | 1/AA/2737:2742, 1/AA/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_4V8Q_112 | 1/AA/2838:2839, 1/AA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V8Q_201 | 1/AA/2843:2845, 1/AA/2871:2874 | No text annotation | homologous IL_4WF9_107 IL_31531.3 | |
| IL_4V8Q_114 | 1/AA/2847:2852, 1/AA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4V8Q_116 | 1/AB/23:28, 1/AB/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_4V8Q_117 | 1/AB/30:31, 1/AB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_68140.4 | |
| IL_4V8Q_118 | 1/AB/34:38, 1/AB/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4V8Q_119 | 1/AB/71:79, 1/AB/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4V8Q_121 | 1/BA/30:32, 1/BA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_4V8Q_122 | 1/BA/44:45, 1/BA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.5 | |
| IL_4V8Q_123 | 1/BA/47:52, 1/BA/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_4V8Q_124 | 1/BA/54:57, 1/BA/355:357 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4V8Q_125 | 1/BA/63:66, 1/BA/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_4V8Q_126 | 1/BA/67:69, 1/BA/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_4V8Q_128 | 1/BA/129:131, 1/BA/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_4V8Q_129 | 1/BA/132:136, 1/BA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4V8Q_130 | 1/BA/148:153, 1/BA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4V8Q_131 | 1/BA/186:188, 1/BA/189L:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4V8Q_132 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4V8Q_133 | 1/BA/249:252, 1/BA/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4V8Q_134 | 1/BA/292:293, 1/BA/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4V8Q_135 | 1/BA/367:369, 1/BA/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_4V8Q_136 | 1/BA/371:375, 1/BA/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_4V8Q_137 | 1/BA/375:376, 1/BA/387:389 | Single bulged G | geometric IL_4LFB_016 IL_00225.13 | |
| IL_4V8Q_138 | 1/BA/409:416, 1/BA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4V8Q_139 | 1/BA/446:450, 1/BA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_4V8Q_215 | 1/BA/450:455, 1/BA/476:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4V8Q_140 | 1/BA/504:511, 1/BA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_4V8Q_141 | 1/BA/515:521, 1/BA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V8Q_142 | 1/BA/569:575, 1/BA/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_4V8Q_143 | 1/BA/580:584, 1/BA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_4V8Q_144 | 1/BA/594:596, 1/BA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4V8Q_145 | 1/BA/597:598, 1/BA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_4V8Q_146 | 1/BA/605:612, 1/BA/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_4V8Q_147 | 1/BA/654:655, 1/BA/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_4V8Q_148 | 1/BA/657:658, 1/BA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4V8Q_149 | 1/BA/662:666, 1/BA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_4V8Q_204 | 1/BA/673:677, 1/BA/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_4V8Q_151 | 1/BA/683:688, 1/BA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4V8Q_152 | 1/BA/774:778, 1/BA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_4V8Q_153 | 1/BA/779:783, 1/BA/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_4V8Q_154 | 1/BA/887:894, 1/BA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_4V8Q_155 | 1/BA/922:923, 1/BA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_4V8Q_156 | 1/BA/925:927, 1/BA/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_4V8Q_157 | 1/BA/933:935, 1/BA/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_4V8Q_158 | 1/BA/952:954, 1/BA/1226:1229 | Minor groove platform with extra cWW | geometric IL_4WF9_003 IL_90351.1 | |
| IL_4V8Q_159 | 1/BA/993:997, 1/BA/1044:1045 | Minor groove platform | homologous IL_4LFB_039 IL_47078.3 | |
| IL_4V8Q_161 | 1/BA/1000:1008, 1/BA/1021:1041 | No text annotation | ||
| IL_4V8Q_163 | 1/BA/1048:1050, 1/BA/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_4V8Q_164 | 1/BA/1052:1056, 1/BA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V8Q_165 | 1/BA/1057:1058, 1/BA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_4V8Q_166 | 1/BA/1060:1061, 1/BA/1195:1197 | Single bulged U | geometric IL_2PN3_003 IL_89505.4 | |
| IL_4V8Q_167 | 1/BA/1061:1063, 1/BA/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_4V8Q_169 | 1/BA/1124:1128, 1/BA/1143:1149 | No text annotation | geometric IL_4LFB_048 IL_85222.1 | |
| IL_4V8Q_170 | 1/BA/1158:1161, 1/BA/1175:1181 | No text annotation | homologous IL_4LFB_050 IL_42032.1 | |
| IL_4V8Q_172 | 1/BA/1247:1253, 1/BA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4V8Q_173 | 1/BA/1255:1258, 1/BA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4V8Q_174 | 1/BA/1259:1262, 1/BA/1273:1276 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_4V8Q_216 | 1/BA/1303:1308, 1/BA/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_4V8Q_176 | 1/BA/1399:1401, 1/BA/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_4V8Q_177 | 1/BA/1401:1404, 1/BA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V8Q_178 | 1/BA/1405:1407, 1/BA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_4V8Q_179 | 1/BA/1407:1409, 1/BA/1491:1494 | Not an internal loop | geometric IL_5VCI_005 NA | |
| IL_4V8Q_180 | 1/BA/1409:1412, 1/BA/1488:1491 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_4V8Q_181 | 1/BA/1412:1414, 1/BA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4V8Q_182 | 1/BA/1416:1419, 1/BA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4V8Q_183 | 1/BA/1431:1435, 1/BA/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_4V8Q_184 | 1/BA/1435:1437, 1/BA/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_87907.2 | |
| IL_4V8Q_185 | 1/BA/1440:1443, 1/BA/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_4V8Q_208 | 1/BA/1440:1445, 1/BA/1457:1461 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V8Q_003 | Major groove platform with extra cWW | ||
| IL_4V8Q_009 | No text annotation | ||
| IL_4V8Q_010 | Triple sheared | ||
| IL_4V8Q_021 | No text annotation | ||
| IL_4V8Q_027 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V8Q_033 | Isolated non-canonical cWW pair | ||
| IL_4V8Q_192 | No text annotation | ||
| IL_4V8Q_193 | No text annotation | ||
| IL_4V8Q_051 | No text annotation | ||
| IL_4V8Q_059 | No text annotation | ||
| IL_4V8Q_194 | Isolated non-canonical cWW pair | ||
| IL_4V8Q_061 | No text annotation | ||
| IL_4V8Q_196 | No text annotation | ||
| IL_4V8Q_082 | Isolated non-canonical cWW pair | ||
| IL_4V8Q_083 | Self complementary | ||
| IL_4V8Q_197 | No text annotation | ||
| IL_4V8Q_084 | No text annotation | ||
| IL_4V8Q_198 | No text annotation | ||
| IL_4V8Q_085 | No text annotation | ||
| IL_4V8Q_214 | No text annotation | ||
| IL_4V8Q_086 | Single stack bend | ||
| IL_4V8Q_087 | No text annotation | ||
| IL_4V8Q_088 | Kink-turn | ||
| IL_4V8Q_089 | Isolated cWH basepair | ||
| IL_4V8Q_090 | Single stack bend | ||
| IL_4V8Q_091 | Single stack bend | ||
| IL_4V8Q_097 | Major groove platform with extra pair | ||
| IL_4V8Q_104 | Isolated non-canonical cWW pair | ||
| IL_4V8Q_113 | No text annotation | ||
| IL_4V8Q_115 | Isolated non-canonical cWW pair | ||
| IL_4V8Q_120 | Isolated non-canonical cWW pair | ||
| IL_4V8Q_127 | Isolated non-canonical cWW pair | ||
| IL_4V8Q_202 | No text annotation | ||
| IL_4V8Q_203 | No text annotation | ||
| IL_4V8Q_150 | No text annotation | ||
| IL_4V8Q_160 | Isolated cWS basepair | ||
| IL_4V8Q_205 | No text annotation | ||
| IL_4V8Q_162 | Tandem non-canonical cWW pairs | ||
| IL_4V8Q_168 | Isolated non-canonical cWW pair | ||
| IL_4V8Q_171 | Isolated non-canonical cWW pair | ||
| IL_4V8Q_206 | Triple sheared | ||
| IL_4V8Q_175 | No text annotation | ||
| IL_4V8Q_207 | No text annotation | ||
| IL_4V8Q_186 | No text annotation | ||
| IL_4V8Q_187 | No text annotation | ||
| IL_4V8Q_188 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V8Q_017 | 1/AA/30:31, 1/AA/474:481, 1/AA/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4V8Q_018 | 1/AA/30:31, 1/AA/474:484, 1/AA/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_4V8Q_019 | 1/AA/32:35, 1/AA/445:461, 1/AA/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_4V8Q_020 | 1/AA/56:57, 1/AA/70:76, 1/AA/110:114 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_4V8Q_021 | 1/AA/269:271, 1/AA/271:272, 1/AA/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4V8Q_001 | 1/AA/683:689, 1/AA/773:775, 1/AA/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_4V8Q_002 | 1/AA/698:700, 1/AA/732:736, 1/AA/760:763 | No text annotation | homologous J3_7A0S_005 J3_44724.7 | |
| J3_4V8Q_003 | 1/AA/1298:1303, 1/AA/1625:1627, 1/AA/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4V8Q_004 | 1/AA/1306:1309, 1/AA/1605:1611, 1/AA/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V8Q_022 | 1/AA/1344:1350, 1/AA/1381:1385, 1/AA/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_4V8Q_023 | 1/AA/1424:1429, 1/AA/1564:1565, 1/AA/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_4V8Q_005 | 1/AA/2091:2093, 1/AA/2196:2200, 1/AA/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V8Q_024 | 1/AA/2282:2284, 1/AA/2384:2395, 1/AA/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_4V8Q_006 | 1/AA/2295:2297, 1/AA/2321:2323, 1/AA/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4V8Q_007 | 1/AA/2517:2520, 1/AA/2545:2547, 1/AA/2561:2567 | No text annotation | homologous J3_9DFE_017 J3_32601.5 | |
| J3_4V8Q_025 | 1/AA/2814:2815, 1/AA/2831:2836, 1/AA/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V8Q_038 | 1/AB/11:18, 1/AB/65:69, 1/AB/108:110 | No text annotation | ||
| J3_4V8Q_027 | 1/BA/46:47, 1/BA/361:367, 1/BA/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_4V8Q_028 | 1/BA/46:52, 1/BA/359:367, 1/BA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4V8Q_029 | 1/BA/586:588, 1/BA/651:654, 1/BA/754:755 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_4V8Q_030 | 1/BA/586:588, 1/BA/651:655, 1/BA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4V8Q_031 | 1/BA/672:673, 1/BA/717:725, 1/BA/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4V8Q_009 | 1/BA/826:829, 1/BA/857:861, 1/BA/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_4V8Q_010 | 1/BA/936:939, 1/BA/1344:1350, 1/BA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4V8Q_011 | 1/BA/943:946, 1/BA/1235:1237, 1/BA/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_4V8Q_012 | 1/BA/955:962, 1/BA/973:984, 1/BA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4V8Q_013 | 1/BA/990:993, 1/BA/1045:1047, 1/BA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4V8Q_032 | 1/BA/990:997, 1/BA/1044:1047, 1/BA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4V8Q_014 | 1/BA/1063:1068, 1/BA/1107:1113, 1/BA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4V8Q_033 | 1/BA/1073:1074, 1/BA/1083:1087, 1/BA/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4V8Q_015 | 1/BA/1116:1118, 1/BA/1155:1158, 1/BA/1181:1184 | No text annotation | homologous J3_4LFB_008 J3_82365.4 | |
| J3_4V8Q_034 | 1/BA/1116:1118, 1/BA/1155:1161, 1/BA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4V8Q_016 | 1/BA/1237:1241, 1/BA/1296:1303, 1/BA/1334:1337 | No text annotation | geometric J3_4LFB_009 J3_37047.6 | |
| J3_4V8Q_037 | 1/BY/7:20, 1/BY/58:62, 1/BY/78:79 | No text annotation J3_46173.1 | ||
| J4_4V8Q_001 | 1/AA/268:269, 1/AA/370:375, 1/AA/399:406, 1/AA/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4V8Q_002 | 1/AA/297:301, 1/AA/316:319, 1/AA/323:325, 1/AA/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_4V8Q_003 | 1/AA/601:604, 1/AA/624:628, 1/AA/635:638, 1/AA/650:656 | No text annotation | ||
| J4_4V8Q_004 | 1/AA/1270:1276, 1/AA/1294:1295, 1/AA/1645:1648, 1/AA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_4V8Q_005 | 1/AA/1310:1314, 1/AA/1338:1343, 1/AA/1404:1405, 1/AA/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_4V8Q_006 | 1/AA/1313:1314, 1/AA/1338:1343, 1/AA/1404:1405, 1/AA/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_4V8Q_007 | 1/AA/1444:1445, 1/AA/1466:1467, 1/AA/1525:1526, 1/AA/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4V8Q_008 | 1/AA/1772:1776, 1/AA/1788:1792, 1/AA/1827:1830, 1/AA/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4V8Q_009 | 1/AA/1833:1835, 1/AA/1905:1906, 1/AA/1924:1933, 1/AA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4V8Q_010 | 1/AA/2285:2289, 1/AA/2343:2347, 1/AA/2370:2372, 1/AA/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_4V8Q_011 | 1/AA/2643:2646, 1/AA/2674:2676, 1/AA/2731:2735, 1/AA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_4V8Q_012 | 1/BA/115:122, 1/BA/239:240, 1/BA/286:289, 1/BA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4V8Q_013 | 1/BA/142:144, 1/BA/178:183, 1/BA/194:198, 1/BA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4V8Q_014 | 1/BA/575:577, 1/BA/764:769, 1/BA/810:821, 1/BA/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_4V8Q_015 | 1/BV/7:10, 1/BV/26:28, 1/BV/44:50, 1/BV/66:67 | tRNA junction | homologous J4_4WT8_034 J4_70449.27 | |
| J5_4V8Q_001 | 1/AA/47:54, 1/AA/116:121, 1/AA/130:131, 1/AA/148:150, 1/AA/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_4V8Q_002 | 1/AA/268:271, 1/AA/271:272, 1/AA/366:375, 1/AA/399:406, 1/AA/421:424 | No text annotation | ||
| J5_4V8Q_003 | 1/AA/531:533, 1/AA/560:564, 1/AA/577:579, 1/AA/1261:1262, 1/AA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4V8Q_004 | 1/AA/584:589, 1/AA/668:671, 1/AA/809:812, 1/AA/1195:1196, 1/AA/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_4V8Q_005 | 1/AA/1674:1682, 1/AA/1706:1707, 1/AA/1751:1752, 1/AA/1756:1764, 1/AA/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_4V8Q_006 | 1/AA/2057:2064, 1/AA/2446:2453, 1/AA/2500:2507, 1/AA/2582:2588, 1/AA/2606:2611 | No text annotation | ||
| J5_4V8Q_007 | 1/AA/2074:2077, 1/AA/2243:2246, 1/AA/2258:2259, 1/AA/2281:2282, 1/AA/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_4V8Q_008 | 1/BA/36:39, 1/BA/403:406, 1/BA/436:442, 1/BA/492:500, 1/BA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V8Q_009 | 1/BA/58:61, 1/BA/106:113, 1/BA/314:316, 1/BA/337:339, 1/BA/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J6_4V8Q_001 | 1/AA/44:45, 1/AA/179:183, 1/AA/214:224, 1/AA/231:235, 1/AA/262:266, 1/AA/426:433 | No text annotation | ||
| J6_4V8Q_002 | 1/AA/2074:2077, 1/AA/2243:2246, 1/AA/2258:2259, 1/AA/2281:2284, 1/AA/2384:2395, 1/AA/2421:2435 | No text annotation | ||
| J7_4V8Q_001 | 1/AA/817:822, 1/AA/835:836, 1/AA/943:946, 1/AA/971:976, 1/AA/987:991, 1/AA/1163:1164, 1/AA/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V8Q_008 | No text annotation | ||
| J3_4V8Q_026 | No text annotation | ||
| J3_4V8Q_035 | No text annotation | ||
| J3_4V8Q_036 | No text annotation | ||
| J4_4V8Q_016 | No text annotation |
Coloring options: