Valid loops

#loop idlocationmotif
11/AA/24:30,1/AA/510:516NA
21/AA/36:37,1/AA/442:444NA
31/AA/42:44,1/AA/433:436NA
41/AA/81:85,1/AA/97:105NA
51/AA/183:184,1/AA/212:214NA
61/AA/188:194,1/AA/201:208NA
71/AA/239:245,1/AA/253:258NA
81/AA/272D:272E,1/AA/363E:364NA
91/AA/272J:280,1/AA/360:363NA
101/AA/280:285,1/AA/356:360NA
111/AA/288:290,1/AA/350:353NA
121/AA/293:295,1/AA/343:347NA
131/AA/481:484,1/AA/496:509NA
141/AA/564:566,1/AA/575:577NA
151/AA/606:610,1/AA/618:622NA
161/AA/672:674,1/AA/806:808NA
171/AA/674:678,1/AA/799:806NA
181/AA/697:698,1/AA/763:765NA
191/AA/702:703,1/AA/728:730NA
201/AA/703:707,1/AA/724:728NA
211/AA/707:709,1/AA/722:724NA
221/AA/738:741,1/AA/756:758NA
231/AA/775:777,1/AA/787:791NA
241/AA/837:838,1/AA/940:942NA
251/AA/844:846,1/AA/931:934NA
261/AA/846:850,1/AA/927:931NA
271/AA/857:862,1/AA/915:920NA
281/AA/862:863,1/AA/913:915NA
291/AA/864:868,1/AA/909:912NA
301/AA/870:872,1/AA/905:907NA
311/AA/875:877,1/AA/899:902NA
321/AA/877:881,1/AA/895:899NA
331/AA/881:883,1/AA/893:895NA
341/AA/952:954,1/AA/963:965NA
351/AA/994:996,1/AA/1159:1160NA
361/AA/998:1002,1/AA/1153:1157NA
371/AA/1004:1011,1/AA/1150:1151NA
381/AA/1011:1013,1/AA/1149:1150NA
391/AA/1018:1024,1/AA/1140:1144NA
401/AA/1024:1030,1/AA/1124:1140NA
411/AA/1031:1034,1/AA/1121:1123NA
421/AA/1196:1198,1/AA/1247:1250NA
431/AA/1202:1206,1/AA/1240:1243NA
441/AA/1208:1215,1/AA/1234:1238NA
451/AA/1219:1221,1/AA/1229:1230NA
461/AA/1262:1269,1/AA/2011:2017NA
471/AA/1310:1313,1/AA/1603:1604NA
481/AA/1319:1323,1/AA/1331:1333NA
491/AA/1351:1355,1/AA/1376:1380NA
501/AA/1357:1361,1/AA/1370:1374NA
511/AA/1415:1416,1/AA/1582:1587NA
521/AA/1417:1421,1/AA/1577:1581NA
531/AA/1433:1435,1/AA/1557:1560NA
541/AA/1437:1440,1/AA/1551:1555NA
551/AA/1448:1450,1/AA/1462:1463NA
561/AA/1469:1473,1/AA/1518:1523NA
571/AA/1479:1482,1/AA/1506:1512NA
581/AA/1489:1491,1/AA/1499:1500NA
591/AA/1526:1530,1/AA/1539:1546NA
601/AA/1651:1656,1/AA/2004:2006NA
611/AA/1663:1665,1/AA/1995:1997NA
621/AA/1666:1669,1/AA/1993:1994NA
631/AA/1669:1674,1/AA/1990:1993NA
641/AA/1686:1691,1/AA/1696:1702NA
651/AA/1770:1771,1/AA/1980:1982NA
661/AA/1798:1804,1/AA/1813:1821NA
671/AA/1837:1840,1/AA/1902:1903NA
681/AA/1841:1842,1/AA/1898:1901NA
691/AA/1846:1849,1/AA/1893:1894NA
701/AA/1851:1855,1/AA/1887:1891NA
711/AA/1856:1860,1/AA/1882:1886NA
721/AA/1933:1934,1/AA/1964:1967NA
731/AA/1934:1945,1/AA/1961:1964NA
741/AA/2050:2052,1/AA/2617:2618NA
751/AA/2054:2057,1/AA/2611:2615NA
761/AA/2067:2069,1/AA/2442:2443NA
771/AA/2070:2071,1/AA/2438:2441NA
781/AA/2081:2083,1/AA/2236:2239NA
791/AA/2085:2087,1/AA/2232:2234NA
801/AA/2096:2098,1/AA/2191:2193NA
811/AA/2098:2101,1/AA/2188:2191NA
821/AA/2101:2105,1/AA/2184:2188NA
831/AA/2297:2299,1/AA/2317:2321NA
841/AA/2350:2353,1/AA/2364:2367NA
851/AA/2401:2403,1/AA/2414:2415NA
861/AA/2453:2454,1/AA/2498:2500NA
871/AA/2454:2455,1/AA/2496:2498NA
881/AA/2456:2459,1/AA/2493:2495NA
891/AA/2459:2461,1/AA/2489:2493NA
901/AA/2466:2470,1/AA/2480:2484NA
911/AA/2507:2508,1/AA/2580:2582NA
921/AA/2510:2512,1/AA/2574:2578NA
931/AA/2512:2513,1/AA/2571:2574NA
941/AA/2522:2523,1/AA/2540:2543NA
951/AA/2591:2592,1/AA/2601:2603NA
961/AA/2636:2640,1/AA/2774:2782NA
971/AA/2652:2658,1/AA/2663:2668NA
981/AA/2680:2684,1/AA/2725:2727NA
991/AA/2687:2691,1/AA/2718:2722NA
1001/AA/2695:2696,1/AA/2711:2714NA
1011/AA/2737:2742,1/AA/2762:2767NA
1021/AA/2838:2839,1/AA/2878:2880NA
1031/AA/2843:2846,1/AA/2870:2874NA
1041/AA/2847:2852,1/AA/2865:2869NA
1051/AB/20:22,1/AB/61:63NA
1061/AB/23:28,1/AB/56:60NA
1071/AB/30:31,1/AB/51:54NA
1081/AB/34:38,1/AB/44:48NA
1091/AB/71:79,1/AB/98:106NA
1101/AB/80:82,1/AB/95:97NA
1111/BA/30:32,1/BA/552:553NA
1121/BA/44:45,1/BA/396:398NA
1131/BA/47:52,1/BA/359:361NA
1141/BA/54:57,1/BA/355:357NA
1151/BA/63:66,1/BA/103:104NA
1161/BA/67:69,1/BA/100:102NA
1171/BA/70:72,1/BA/97:99NA
1181/BA/129:131,1/BA/231:232NA
1191/BA/132:136,1/BA/227:230NA
1201/BA/148:153,1/BA/168:174NA
1211/BA/186:188,1/BA/189L:191NA
1221/BA/242:247,1/BA/277:284NA
1231/BA/249:252,1/BA/274:275NA
1241/BA/292:293,1/BA/304:308NA
1251/BA/367:369,1/BA/392:393NA
1261/BA/371:375,1/BA/389:390NA
1271/BA/375:376,1/BA/387:389NA
1281/BA/409:416,1/BA/427:433NA
1291/BA/446:450,1/BA/483:488NA
1301/BA/504:511,1/BA/540:541NA
1311/BA/515:521,1/BA/528:536NA
1321/BA/569:575,1/BA/880:881NA
1331/BA/580:584,1/BA/757:761NA
1341/BA/594:596,1/BA/644:645NA
1351/BA/597:598,1/BA/640:643NA
1361/BA/605:612,1/BA/628:633NA
1371/BA/654:655,1/BA/751:754NA
1381/BA/657:658,1/BA/747:749NA
1391/BA/662:666,1/BA/740:743NA
1401/BA/673:678,1/BA/712:717NA
1411/BA/683:688,1/BA/699:707NA
1421/BA/774:778,1/BA/804:805NA
1431/BA/779:783,1/BA/799:803NA
1441/BA/887:894,1/BA/905:910NA
1451/BA/922:923,1/BA/1393:1395NA
1461/BA/925:927,1/BA/1390:1391NA
1471/BA/933:935,1/BA/1380:1384NA
1481/BA/952:954,1/BA/1226:1229NA
1491/BA/993:997,1/BA/1044:1045NA
1501/BA/1000:1008,1/BA/1021:1041NA
1511/BA/1008:1011,1/BA/1018:1021NA
1521/BA/1048:1050,1/BA/1208:1209NA
1531/BA/1052:1056,1/BA/1204:1206NA
1541/BA/1057:1058,1/BA/1199:1203NA
1551/BA/1060:1061,1/BA/1195:1197NA
1561/BA/1061:1063,1/BA/1193:1195NA
1571/BA/1124:1128,1/BA/1143:1149NA
1581/BA/1158:1161,1/BA/1175:1181NA
1591/BA/1247:1253,1/BA/1284:1290NA
1601/BA/1255:1258,1/BA/1277:1282NA
1611/BA/1259:1262,1/BA/1273:1276NA
1621/BA/1303:1309,1/BA/1328:1334NA
1631/BA/1399:1401,1/BA/1501:1504NA
1641/BA/1401:1404,1/BA/1497:1501NA
1651/BA/1405:1407,1/BA/1494:1496NA
1661/BA/1407:1409,1/BA/1491:1494NA
1671/BA/1409:1412,1/BA/1488:1491NA
1681/BA/1412:1414,1/BA/1486:1488NA
1691/BA/1416:1419,1/BA/1481:1484NA
1701/BA/1431:1435,1/BA/1466:1469NA
1711/BA/1435:1437,1/BA/1464:1466NA
1721/BA/1440:1443,1/BA/1459:1461NA
1731/BY/20:22,1/BY/56:58IL_01312.10

Problematic loops

#loop idProblemSequence
1CAG,CUG
2GGGA,UCCC
32106, 2107, 2108, 2109, 2110, 2111, 2112, 2113, 2114, 2115, 2116, 2117, 2118, 2119, 2120, 2121, 2122, 2176, 2177, 2178, 2179, 2180, 2181, 2182, 2183
42122, 2123, 2174, 2175, 2176
52123, 2124, 2125, 2126, 2127, 2161, 2162, 2163, 2164, 2165, 2166, 2167, 2168, 2169, 2170, 2171, 2172, 2173, 2174
62129, 2130, 2131, 2132, 2133, 2134, 2135, 2136, 2155, 2156, 2157, 2158, 2159
7CCC,GGG
82138, 2139, 2140, 2152, 2153
92140, 2141, 2150, 2151, 2152
10GAA,UUC
11UGC,GCA
12UAG,CUA
13CGC,GCG
14UCG,CGA
1550, 51, 52, 64, 65, 66

Valid loops

#loop idlocationmotif
11/AA/59:68NA
21/AA/87:95NA
31/AA/123:128NA
41/AA/139:142ANA
51/AA/154A:171NA
61/AA/194:201NA
71/AA/225:230NA
81/AA/246:252NA
91/AA/271H:271PNA
101/AA/305:312NA
111/AA/319:323NA
121/AA/327:335NA
131/AA/382:392NA
141/AA/410:417NA
151/AA/462:467NA
161/AA/487:493NA
171/AA/543:549NA
181/AA/566:575NA
191/AA/612:615NA
201/AA/629:634NA
211/AA/641:647NA
221/AA/712:719NA
231/AA/744:753NA
241/AA/779:785NA
251/AA/826:831NA
261/AA/883:893NA
271/AA/955:962NA
281/AA/978:985NA
291/AA/1055:1104NA
301/AA/1170:1179NA
311/AA/1222:1227NA
321/AA/1281:1289NA
331/AA/1324:1330NA
341/AA/1363:1368NA
351/AA/1389:1398NA
361/AA/1450A:1461NA
371/AA/1492:1498NA
381/AA/1532:1537NA
391/AA/1565:1568NA
401/AA/1612:1619NA
411/AA/1631:1635NA
421/AA/1691:1696NA
431/AA/1718:1744NA
441/AA/1752:1756NA
451/AA/1777:1787NA
461/AA/1806:1811NA
471/AA/1864:1878NA
481/AA/1910:1920NA
491/AA/1949:1957NA
501/AA/2027:2036NA
511/AA/2205:2219NA
521/AA/2248:2256NA
531/AA/2264:2276NA
541/AA/2303:2313NA
551/AA/2324:2331NA
561/AA/2355:2362NA
571/AA/2374:2379NA
581/AA/2404:2413NA
591/AA/2471:2479NA
601/AA/2528:2535NA
611/AA/2551:2557NA
621/AA/2594:2599NA
631/AA/2658:2663NA
641/AA/2701:2706NA
651/AA/2745:2759NA
661/AA/2819:2827NA
671/AA/2856:2861NA
681/AB/38:44NA
691/AB/86:91NA
701/BA/12:22NA
711/BA/72:97NA
721/BA/158:163NA
731/BA/189B:189INA
741/BA/200:217NA
751/BA/259:267NA
761/BA/296:301NA
771/BA/320:333NA
781/BA/342:347NA
791/BA/379:384NA
801/BA/418:425NA
811/BA/458:473NA
821/BA/522:527NA
831/BA/617:623NA
841/BA/689:698NA
851/BA/726:731NA
861/BA/786:796NA
871/BA/837:849NA
881/BA/862:867NA
891/BA/897:902NA
901/BA/963:972NA
911/BA/1012:1017NA
921/BA/1076:1081NA
931/BA/1089:1096NA
941/BA/1128:1143NA
951/BA/1165:1171NA
961/BA/1265:1270NA
971/BA/1314:1323NA
981/BA/1356:1366NA
991/BA/1445:1457NA
1001/BA/1515:1520NA
1011/BV/13:23NA
1021/BV/32:40NA
1031/BV/54:62NA
1041/BY/66:74HL_33239.14

Problematic loops

#loop idProblemSequence
12141, 2142, 2143, 2144, 2145, 2146, 2147, 2148, 2149, 2150
22792, 2793, 2794, 2795, 2796, 2799, 2801, 2801, 2802, 2803, 2804
312, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24
430, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42
554, 55, 56, 57, 58, 59, 60, 61, 62
622, 23, 24, 40, 54, 55, 56

Valid loops

#loop idlocationmotif
11/AA/683:689,1/AA/773:775,1/AA/791:794NA
21/AA/698:700,1/AA/732:736,1/AA/760:763NA
31/AA/1298:1303,1/AA/1625:1627,1/AA/1639:1642NA
41/AA/1306:1309,1/AA/1605:1611,1/AA/1620:1622NA
51/AA/2091:2093,1/AA/2196:2200,1/AA/2223:2228NA
61/AA/2295:2297,1/AA/2321:2323,1/AA/2332:2337NA
71/AA/2517:2520,1/AA/2545:2547,1/AA/2561:2567NA
81/AB/11:18,1/AB/65:70,1/AB/107:110NA
91/BA/826:829,1/BA/857:861,1/BA/868:874NA
101/BA/936:939,1/BA/1344:1350,1/BA/1372:1379NA
111/BA/943:946,1/BA/1235:1237,1/BA/1337:1340NA
121/BA/955:962,1/BA/973:984,1/BA/1221:1225NA
131/BA/990:993,1/BA/1045:1047,1/BA/1210:1215NA
141/BA/1063:1068,1/BA/1107:1113,1/BA/1187:1193NA
151/BA/1116:1118,1/BA/1155:1158,1/BA/1181:1184NA
161/BA/1237:1241,1/BA/1296:1303,1/BA/1334:1337NA

Problematic loops

No problematic loops


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