6B4V Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6B4V_001 | 1/A/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_6B4V_002 | 1/A/79:90 | No text annotation Not in a motif group | ||
| HL_6B4V_003 | 1/A/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_6B4V_004 | 1/A/186G:191A | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_6B4V_005 | 1/A/200:217 | No text annotation Not in a motif group | ||
| HL_6B4V_006 | 1/A/258:268 | No text annotation Not in a motif group | ||
| HL_6B4V_007 | 1/A/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_6B4V_008 | 1/A/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_6B4V_009 | 1/A/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_6B4V_010 | 1/A/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_6B4V_011 | 1/A/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_6B4V_012 | 1/A/455:477 | No text annotation Not in a motif group | ||
| HL_6B4V_013 | 1/A/521:528 | No text annotation Not in a motif group | homologous HL_4LFB_013 NA | |
| HL_6B4V_014 | 1/A/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_6B4V_015 | 1/A/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_6B4V_016 | 1/A/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_6B4V_017 | 1/A/786:796 | No text annotation Not in a motif group | homologous HL_6CZR_088 HL_12326.1 | |
| HL_6B4V_018 | 1/A/837:849 | No text annotation Not in a motif group | ||
| HL_6B4V_019 | 1/A/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_6B4V_020 | 1/A/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_6B4V_021 | 1/A/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_6B4V_022 | 1/A/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_6B4V_023 | 1/A/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_6B4V_024 | 1/A/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_6B4V_025 | 1/A/1129:1143 | No text annotation Not in a motif group | ||
| HL_6B4V_026 | 1/A/1164:1172 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_6B4V_027 | 1/A/1264:1271 | No text annotation Not in a motif group | geometric HL_4WF9_053 HL_09136.1 | |
| HL_6B4V_028 | 1/A/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_6B4V_029 | 1/A/1355:1367 | No text annotation Not in a motif group | ||
| HL_6B4V_030 | 1/A/1449:1454 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_6B4V_031 | 1/A/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_6B4V_032 | 1/B/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_6B4V_033 | 1/B/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_6B4V_034 | 1/B/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_75407.1 | |
| HL_6B4V_035 | 1/B/137B:141B | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_6B4V_036 | 1/B/154:172 | No text annotation Not in a motif group | ||
| HL_6B4V_037 | 1/B/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.2 | |
| HL_6B4V_038 | 1/B/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_6B4V_039 | 1/B/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_6B4V_040 | 1/B/270J:270R | No text annotation Not in a motif group | ||
| HL_6B4V_041 | 1/B/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_6B4V_042 | 1/B/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_6B4V_043 | 1/B/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_6B4V_044 | 1/B/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_6B4V_045 | 1/B/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_6B4V_046 | 1/B/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_6B4V_047 | 1/B/544:549 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_6B4V_048 | 1/B/566:575 | No text annotation Not in a motif group | geometric HL_7A0S_018 HL_89380.2 | |
| HL_6B4V_049 | 1/B/611:617 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_6B4V_050 | 1/B/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_6B4V_051 | 1/B/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_6B4V_052 | 1/B/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_6B4V_053 | 1/B/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_6B4V_054 | 1/B/779:785 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_74322.1 | |
| HL_6B4V_055 | 1/B/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_64365.1 | |
| HL_6B4V_056 | 1/B/882:894 | No text annotation Not in a motif group | ||
| HL_6B4V_057 | 1/B/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_6B4V_058 | 1/B/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_6B4V_059 | 1/B/1055:1104 | No text annotation Not in a motif group | ||
| HL_6B4V_060 | 1/B/1169:1180 | No text annotation Not in a motif group | ||
| HL_6B4V_061 | 1/B/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_6B4V_062 | 1/B/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_6B4V_063 | 1/B/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_6B4V_064 | 1/B/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_6B4V_065 | 1/B/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_6B4V_066 | 1/B/1451:1459 | No text annotation Not in a motif group | geometric HL_7RQB_037 HL_32426.1 | |
| HL_6B4V_067 | 1/B/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_6B4V_068 | 1/B/1533:1538 | No text annotation Not in a motif group | ||
| HL_6B4V_069 | 1/B/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_6B4V_070 | 1/B/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_6B4V_071 | 1/B/1630B:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_6B4V_072 | 1/B/1691:1696 | UNCG Not in a motif group | geometric HL_5J7L_175 HL_03562.2 | |
| HL_6B4V_073 | 1/B/1727:1733 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_6B4V_074 | 1/B/1777:1787 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.5 | |
| HL_6B4V_075 | 1/B/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_6B4V_076 | 1/B/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_6B4V_077 | 1/B/1909:1921 | No text annotation Not in a motif group | homologous HL_7RQB_048 NA | |
| HL_6B4V_078 | 1/B/1949:1957 | No text annotation Not in a motif group | homologous HL_4WF9_046 HL_51824.1 | |
| HL_6B4V_079 | 1/B/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_6B4V_080 | 1/B/2139:2152 | No text annotation Not in a motif group | ||
| HL_6B4V_081 | 1/B/2209:2215 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
| HL_6B4V_082 | 1/B/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_6B4V_083 | 1/B/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_6B4V_084 | 1/B/2302:2314 | No text annotation Not in a motif group | ||
| HL_6B4V_085 | 1/B/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_6B4V_086 | 1/B/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_6B4V_087 | 1/B/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_6B4V_088 | 1/B/2404:2413 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_6B4V_089 | 1/B/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_6B4V_090 | 1/B/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_6B4V_091 | 1/B/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_6B4V_092 | 1/B/2594:2599 | GNRA Not in a motif group | homologous HL_4WF9_059 HL_42097.1 | |
| HL_6B4V_093 | 1/B/2658:2663 | GNRA Not in a motif group | geometric HL_1MZP_001 HL_42097.1 | |
| HL_6B4V_094 | 1/B/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_6B4V_095 | 1/B/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_6B4V_096 | 1/B/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_6B4V_097 | 1/B/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_6B4V_098 | 1/C/38:44 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6B4V_099 | 1/C/85:91 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_6B4V_100 | 1/D/31:39 | No text annotation Not in a motif group | homologous HL_4YCP_002 NA | |
| HL_6B4V_101 | 1/D/53:61 | No text annotation Not in a motif group | homologous HL_1H3E_004 NA | |
| HL_6B4V_102 | 1/EB/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_6B4V_103 | 1/EB/79:90 | No text annotation Not in a motif group | ||
| HL_6B4V_104 | 1/EB/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_6B4V_105 | 1/EB/186G:191A | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_6B4V_106 | 1/EB/200:217 | No text annotation Not in a motif group | ||
| HL_6B4V_107 | 1/EB/258:268 | No text annotation Not in a motif group | ||
| HL_6B4V_108 | 1/EB/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_6B4V_109 | 1/EB/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_6B4V_110 | 1/EB/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_6B4V_111 | 1/EB/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_6B4V_112 | 1/EB/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_6B4V_113 | 1/EB/455:477 | No text annotation Not in a motif group | ||
| HL_6B4V_114 | 1/EB/521:528 | No text annotation Not in a motif group | homologous HL_4LFB_013 NA | |
| HL_6B4V_115 | 1/EB/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_6B4V_116 | 1/EB/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_6B4V_117 | 1/EB/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_6B4V_118 | 1/EB/786:796 | No text annotation Not in a motif group | homologous HL_6CZR_088 HL_12326.1 | |
| HL_6B4V_119 | 1/EB/837:849 | No text annotation Not in a motif group | ||
| HL_6B4V_120 | 1/EB/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_6B4V_121 | 1/EB/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_6B4V_122 | 1/EB/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_6B4V_123 | 1/EB/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_6B4V_124 | 1/EB/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_6B4V_125 | 1/EB/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_6B4V_126 | 1/EB/1129:1143 | No text annotation Not in a motif group | ||
| HL_6B4V_127 | 1/EB/1164:1172 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_6B4V_128 | 1/EB/1264:1271 | No text annotation Not in a motif group | geometric HL_4WF9_053 HL_09136.1 | |
| HL_6B4V_129 | 1/EB/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_6B4V_130 | 1/EB/1355:1367 | No text annotation Not in a motif group | ||
| HL_6B4V_131 | 1/EB/1449:1454 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_6B4V_132 | 1/EB/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_6B4V_133 | 1/FB/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_6B4V_134 | 1/FB/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_6B4V_135 | 1/FB/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_75407.1 | |
| HL_6B4V_136 | 1/FB/137B:141B | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_6B4V_137 | 1/FB/154:172 | No text annotation Not in a motif group | ||
| HL_6B4V_138 | 1/FB/194:201 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_06192.2 | |
| HL_6B4V_139 | 1/FB/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_6B4V_140 | 1/FB/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.7 | |
| HL_6B4V_141 | 1/FB/270J:270R | No text annotation Not in a motif group | ||
| HL_6B4V_142 | 1/FB/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_6B4V_143 | 1/FB/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_6B4V_144 | 1/FB/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_6B4V_145 | 1/FB/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_6B4V_146 | 1/FB/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_6B4V_147 | 1/FB/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_6B4V_148 | 1/FB/544:549 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_6B4V_149 | 1/FB/566:575 | No text annotation Not in a motif group | homologous HL_7A0S_018 HL_89380.2 | |
| HL_6B4V_150 | 1/FB/611:617 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_6B4V_151 | 1/FB/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_6B4V_152 | 1/FB/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_6B4V_153 | 1/FB/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_6B4V_154 | 1/FB/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_6B4V_155 | 1/FB/779:785 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_74322.1 | |
| HL_6B4V_156 | 1/FB/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_64365.1 | |
| HL_6B4V_157 | 1/FB/882:894 | No text annotation Not in a motif group | ||
| HL_6B4V_158 | 1/FB/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_6B4V_159 | 1/FB/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_6B4V_160 | 1/FB/1055:1104 | No text annotation Not in a motif group | ||
| HL_6B4V_161 | 1/FB/1169:1180 | No text annotation Not in a motif group | ||
| HL_6B4V_162 | 1/FB/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_6B4V_163 | 1/FB/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_6B4V_164 | 1/FB/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_6B4V_165 | 1/FB/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_6B4V_166 | 1/FB/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_6B4V_167 | 1/FB/1451:1459 | No text annotation Not in a motif group | geometric HL_7RQB_037 HL_32426.1 | |
| HL_6B4V_168 | 1/FB/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_6B4V_169 | 1/FB/1533:1538 | No text annotation Not in a motif group | ||
| HL_6B4V_170 | 1/FB/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_6B4V_171 | 1/FB/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_6B4V_172 | 1/FB/1630B:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_6B4V_173 | 1/FB/1691:1696 | UNCG Not in a motif group | geometric HL_5J7L_175 HL_03562.2 | |
| HL_6B4V_174 | 1/FB/1727:1733 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_6B4V_175 | 1/FB/1777:1787 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.5 | |
| HL_6B4V_176 | 1/FB/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_6B4V_177 | 1/FB/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_6B4V_178 | 1/FB/1909:1921 | No text annotation Not in a motif group | homologous HL_7RQB_048 NA | |
| HL_6B4V_179 | 1/FB/1949:1957 | No text annotation Not in a motif group | homologous HL_4WF9_046 HL_51824.1 | |
| HL_6B4V_180 | 1/FB/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_6B4V_181 | 1/FB/2139:2152 | No text annotation Not in a motif group | ||
| HL_6B4V_182 | 1/FB/2209:2215 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
| HL_6B4V_183 | 1/FB/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_6B4V_184 | 1/FB/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_6B4V_185 | 1/FB/2302:2314 | No text annotation Not in a motif group | ||
| HL_6B4V_186 | 1/FB/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_6B4V_187 | 1/FB/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_6B4V_188 | 1/FB/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_6B4V_189 | 1/FB/2404:2413 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_6B4V_190 | 1/FB/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_6B4V_191 | 1/FB/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_6B4V_192 | 1/FB/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_6B4V_193 | 1/FB/2594:2599 | GNRA Not in a motif group | homologous HL_4WF9_059 HL_42097.1 | |
| HL_6B4V_194 | 1/FB/2658:2663 | GNRA Not in a motif group | geometric HL_1MZP_001 HL_42097.1 | |
| HL_6B4V_195 | 1/FB/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_6B4V_196 | 1/FB/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_6B4V_197 | 1/FB/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_6B4V_198 | 1/FB/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_6B4V_199 | 1/GB/38:44 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6B4V_200 | 1/GB/85:91 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_6B4V_201 | 1/HB/31:39 | No text annotation Not in a motif group | homologous HL_1H3E_002 NA | |
| HL_6B4V_202 | 1/HB/53:61 | No text annotation Not in a motif group | homologous HL_1H3E_004 NA | |
| HL_6B4V_203 | 1/IA/13:22 | No text annotation Not in a motif group | homologous HL_4LCK_001 NA | |
| HL_6B4V_204 | 1/IA/31:39 | No text annotation Not in a motif group | homologous HL_5E81_212 NA | |
| HL_6B4V_205 | 1/IA/51:63 | No text annotation Not in a motif group | homologous HL_5EL4_223 NA | |
| HL_6B4V_206 | 1/MC/13:22 | No text annotation Not in a motif group | homologous HL_4LCK_001 NA | |
| HL_6B4V_207 | 1/MC/31:39 | No text annotation Not in a motif group | homologous HL_5E81_212 NA | |
| HL_6B4V_208 | 1/MC/51:63 | No text annotation Not in a motif group | homologous HL_5EL4_223 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6B4V_001 | 1/A/30:32, 1/A/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_6B4V_002 | 1/A/44:45, 1/A/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_6B4V_003 | 1/A/47:52, 1/A/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_6B4V_004 | 1/A/54:56, 1/A/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_6B4V_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_6B4V_006 | 1/A/67:69, 1/A/99:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_6B4V_007 | 1/A/129A:131, 1/A/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_6B4V_008 | 1/A/132:136, 1/A/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_6B4V_009 | 1/A/146:153, 1/A/168:176 | No text annotation Not in a motif group | ||
| IL_6B4V_010 | 1/A/186A:186C, 1/A/191E:191G | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_6B4V_011 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_6B4V_012 | 1/A/249:252, 1/A/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_6B4V_013 | 1/A/292:293, 1/A/304:308 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_37712.2 | |
| IL_6B4V_014 | 1/A/371:375, 1/A/389:390 | C-loop Not in a motif group | homologous IL_6CZR_127 IL_75255.1 | |
| IL_6B4V_016 | 1/A/409:417, 1/A/426:433 | No text annotation Not in a motif group | homologous IL_6CZR_129 IL_58819.1 | |
| IL_6B4V_017 | 1/A/446:450, 1/A/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4LFB_018 IL_88269.3 | |
| IL_6B4V_018 | 1/A/450:455, 1/A/477:483 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_11882.1 | |
| IL_6B4V_019 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_6B4V_020 | 1/A/514:521, 1/A/528:537 | No text annotation Not in a motif group | ||
| IL_6B4V_021 | 1/A/569:575, 1/A/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_6B4V_022 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_6B4V_023 | 1/A/594:596, 1/A/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_6B4V_024 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_6B4V_025 | 1/A/605:612, 1/A/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_6B4V_026 | 1/A/657:658, 1/A/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_6B4V_027 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_6B4V_028 | 1/A/673:678, 1/A/712:717 | No text annotation Not in a motif group | homologous IL_5J7L_034 IL_04668.1 | |
| IL_6B4V_029 | 1/A/683:688, 1/A/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_6B4V_030 | 1/A/774:778, 1/A/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_6B4V_031 | 1/A/779:783, 1/A/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_6B4V_032 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_6B4V_033 | 1/A/922:923, 1/A/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_6B4V_034 | 1/A/925:927, 1/A/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_6B4V_035 | 1/A/933:936, 1/A/1379:1384 | No text annotation Not in a motif group | homologous IL_6CZR_149 IL_93211.1 | |
| IL_6B4V_036 | 1/A/953:954, 1/A/1226:1228 | Minor groove platform Not in a motif group | homologous IL_5J7L_042 IL_42622.2 | |
| IL_6B4V_037 | 1/A/993:997, 1/A/1044:1045 | Minor groove platform Not in a motif group | homologous IL_4LFB_039 IL_47078.1 | |
| IL_6B4V_038 | 1/A/1047:1050, 1/A/1208:1210 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_6B4V_039 | 1/A/1050:1056, 1/A/1204:1208 | No text annotation Not in a motif group | ||
| IL_6B4V_040 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_6B4V_041 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged U Not in a motif group | homologous IL_6CZR_156 IL_83039.13 | |
| IL_6B4V_042 | 1/A/1061:1063, 1/A/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_6B4V_043 | 1/A/1122:1128, 1/A/1144:1151 | No text annotation Not in a motif group | ||
| IL_6B4V_044 | 1/A/1158:1163, 1/A/1173:1181 | No text annotation Not in a motif group | ||
| IL_6B4V_045 | 1/A/1247:1253, 1/A/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_6B4V_046 | 1/A/1255:1258, 1/A/1277:1282 | No text annotation Not in a motif group | homologous IL_6CZR_161 IL_75461.4 | |
| IL_6B4V_047 | 1/A/1259:1263, 1/A/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_6B4V_048 | 1/A/1303:1308, 1/A/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_6B4V_049 | 1/A/1399:1401, 1/A/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_6B4V_050 | 1/A/1401:1405, 1/A/1496:1501 | No text annotation Not in a motif group | homologous IL_4LFB_057 NA | |
| IL_6B4V_051 | 1/A/1405:1409, 1/A/1491:1496 | No text annotation Not in a motif group | ||
| IL_6B4V_052 | 1/A/1412:1414, 1/A/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_6B4V_053 | 1/A/1416:1419, 1/A/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_6B4V_054 | 1/A/1431:1435, 1/A/1466:1469 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
| IL_6B4V_055 | 1/A/1435:1437, 1/A/1464:1466 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 | |
| IL_6B4V_056 | 1/A/1440:1447, 1/A/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.2 | |
| IL_6B4V_057 | 1/B/24:30, 1/B/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7RQB_001 IL_66414.6 | |
| IL_6B4V_058 | 1/B/36:37, 1/B/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_6B4V_059 | 1/B/41:45, 1/B/433:438 | No text annotation Not in a motif group | ||
| IL_6B4V_060 | 1/B/81:85, 1/B/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_6B4V_061 | 1/B/183:184, 1/B/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_6B4V_062 | 1/B/188:194, 1/B/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_6B4V_063 | 1/B/239:245, 1/B/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_6B4V_065 | 1/B/272:273B, 1/B/363F:365 | No text annotation Not in a motif group | geometric IL_6CZR_136 IL_05564.2 | |
| IL_6B4V_066 | 1/B/273E:280, 1/B/360:363C | No text annotation Not in a motif group | ||
| IL_6B4V_067 | 1/B/280:284, 1/B/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_6B4V_068 | 1/B/288:290, 1/B/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_6B4V_069 | 1/B/293:295, 1/B/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_6B4V_070 | 1/B/481:484, 1/B/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
| IL_6B4V_071 | 1/B/564:566, 1/B/575:577 | No text annotation Not in a motif group | homologous IL_7RQB_015 IL_95997.1 | |
| IL_6B4V_072 | 1/B/606:609B, 1/B/618B:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_6B4V_073 | 1/B/672:674, 1/B/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_6B4V_074 | 1/B/674:678, 1/B/799:806 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.6 | |
| IL_6B4V_075 | 1/B/697:698, 1/B/763:765 | Single bulged A Not in a motif group | geometric IL_7A0S_016 IL_37497.2 | |
| IL_6B4V_076 | 1/B/702:703, 1/B/728:730 | Single bulged G Not in a motif group | homologous IL_4WF9_023 IL_00225.2 | |
| IL_6B4V_077 | 1/B/703:707, 1/B/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_6B4V_078 | 1/B/738:741, 1/B/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_6B4V_079 | 1/B/775:777, 1/B/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_6B4V_080 | 1/B/837:838, 1/B/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_6B4V_081 | 1/B/844:846, 1/B/931:934 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 IL_52767.2 | |
| IL_6B4V_082 | 1/B/846:850, 1/B/928:931 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
| IL_6B4V_083 | 1/B/858:862, 1/B/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7RQB_027 IL_38862.1 | |
| IL_6B4V_084 | 1/B/862:863, 1/B/913:915 | Minor groove platform Not in a motif group | geometric IL_7RQB_028 IL_42622.2 | |
| IL_6B4V_085 | 1/B/864:870, 1/B/907:912 | No text annotation Not in a motif group | ||
| IL_6B4V_086 | 1/B/875:877, 1/B/899:902 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_6B4V_087 | 1/B/877:880, 1/B/897:899 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_411 IL_46796.1 | |
| IL_6B4V_088 | 1/B/880:881, 1/B/895:897 | Single bulged A Not in a motif group | geometric IL_4V88_409 IL_37497.2 | |
| IL_6B4V_089 | 1/B/952:954, 1/B/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_6B4V_090 | 1/B/994:996, 1/B/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_6B4V_091 | 1/B/998:1002, 1/B/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_6B4V_092 | 1/B/1004:1011, 1/B/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4WF9_037 IL_15861.7 | |
| IL_6B4V_093 | 1/B/1011:1013, 1/B/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_6B4V_094 | 1/B/1018:1024, 1/B/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_6B4V_095 | 1/B/1024:1030, 1/B/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_6B4V_096 | 1/B/1031:1034, 1/B/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_6B4V_097 | 1/B/1196:1198, 1/B/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_6B4V_098 | 1/B/1202:1206, 1/B/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_6B4V_099 | 1/B/1208:1215, 1/B/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_6B4V_100 | 1/B/1219:1221, 1/B/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_6B4V_101 | 1/B/1262:1269, 1/B/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_6B4V_102 | 1/B/1319:1323, 1/B/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_6B4V_103 | 1/B/1351:1355, 1/B/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_6B4V_104 | 1/B/1357:1361, 1/B/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_4WF9_052 IL_17136.1 | |
| IL_6B4V_105 | 1/B/1415:1416, 1/B/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_6B4V_106 | 1/B/1417:1421, 1/B/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_6B4V_107 | 1/B/1433:1435, 1/B/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_6B4V_108 | 1/B/1437:1440, 1/B/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_6B4V_109 | 1/B/1449:1450, 1/B/1461:1462 | No text annotation Not in a motif group | ||
| IL_6B4V_110 | 1/B/1450:1451, 1/B/1459:1461 | Single bulged A Not in a motif group | homologous IL_7RQB_059 IL_37497.2 | |
| IL_6B4V_111 | 1/B/1469:1473, 1/B/1520:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_6B4V_112 | 1/B/1481:1483, 1/B/1506:1512 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_6B4V_113 | 1/B/1489:1491, 1/B/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_6B4V_114 | 1/B/1526:1533, 1/B/1538:1546B | No text annotation Not in a motif group | ||
| IL_6B4V_115 | 1/B/1651:1656, 1/B/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_6B4V_116 | 1/B/1663:1665, 1/B/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
| IL_6B4V_117 | 1/B/1666:1669, 1/B/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_6B4V_118 | 1/B/1669:1674, 1/B/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_6B4V_119 | 1/B/1686:1691, 1/B/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_6B4V_120 | 1/B/1770:1771, 1/B/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_6B4V_121 | 1/B/1798:1804, 1/B/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_6B4V_122 | 1/B/1837:1840, 1/B/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_6B4V_123 | 1/B/1841:1842, 1/B/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 IL_16396.2 | |
| IL_6B4V_124 | 1/B/1846:1849, 1/B/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_6B4V_125 | 1/B/1851:1855, 1/B/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_6B4V_126 | 1/B/1856:1860, 1/B/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_6B4V_127 | 1/B/1933:1934, 1/B/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_6B4V_128 | 1/B/1934:1945, 1/B/1961:1964 | No text annotation Not in a motif group | homologous IL_7RQB_077 NA | |
| IL_6B4V_129 | 1/B/2050:2052, 1/B/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_6B4V_130 | 1/B/2054:2057, 1/B/2611:2615 | No text annotation Not in a motif group | homologous IL_7RQB_079 IL_01206.1 | |
| IL_6B4V_131 | 1/B/2067:2069, 1/B/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_6B4V_132 | 1/B/2070:2071, 1/B/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_6B4V_133 | 1/B/2081:2083, 1/B/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_6B4V_134 | 1/B/2085:2087, 1/B/2232:2234 | No text annotation Not in a motif group | homologous IL_7A0S_078 IL_95997.1 | |
| IL_6B4V_135 | 1/B/2107:2110, 1/B/2179:2182 | Self complementary Not in a motif group | geometric IL_3NDB_001 IL_30621.2 | |
| IL_6B4V_136 | 1/B/2110:2120, 1/B/2178:2179 | No text annotation Not in a motif group | geometric IL_3U4M_002 IL_45944.3 | |
| IL_6B4V_137 | 1/B/2122:2123, 1/B/2174:2176 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6B4V_138 | 1/B/2123:2129, 1/B/2159:2174 | No text annotation Not in a motif group | ||
| IL_6B4V_140 | 1/B/2350:2353, 1/B/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_6B4V_141 | 1/B/2401:2403, 1/B/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_6B4V_142 | 1/B/2453:2454, 1/B/2498:2500 | Single stack bend Not in a motif group | homologous IL_4WF9_089 IL_76488.2 | |
| IL_6B4V_143 | 1/B/2454:2455, 1/B/2496:2498 | Major groove platform Not in a motif group | geometric IL_4V9F_082 IL_27635.1 | |
| IL_6B4V_144 | 1/B/2457:2459, 1/B/2493:2494 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.1 | |
| IL_6B4V_145 | 1/B/2459:2461, 1/B/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_4WF9_092 IL_92788.2 | |
| IL_6B4V_146 | 1/B/2466:2470, 1/B/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_6B4V_147 | 1/B/2507:2508, 1/B/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_6B4V_148 | 1/B/2510:2512, 1/B/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_340 IL_90933.2 | |
| IL_6B4V_149 | 1/B/2512:2513, 1/B/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_6B4V_150 | 1/B/2522:2523, 1/B/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_6B4V_151 | 1/B/2588:2590, 1/B/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_6B4V_152 | 1/B/2591:2592, 1/B/2601:2603 | Single bulged A Not in a motif group | geometric IL_4V9F_090 IL_37497.2 | |
| IL_6B4V_153 | 1/B/2636:2640, 1/B/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_6B4V_154 | 1/B/2652:2658, 1/B/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 IL_16458.1 | |
| IL_6B4V_155 | 1/B/2680:2684, 1/B/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_6B4V_156 | 1/B/2687:2691, 1/B/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_6B4V_157 | 1/B/2695:2696, 1/B/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_6B4V_158 | 1/B/2737:2742, 1/B/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_6B4V_159 | 1/B/2789:2811, 1/B/2889:2894 | No text annotation Not in a motif group | ||
| IL_6B4V_160 | 1/B/2838:2839, 1/B/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_6B4V_161 | 1/B/2843:2846, 1/B/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_6B4V_162 | 1/B/2847:2852, 1/B/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_6B4V_163 | 1/C/17:18, 1/C/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_6B4V_164 | 1/C/23:28, 1/C/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_6B4V_165 | 1/C/30:31, 1/C/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.6 | |
| IL_6B4V_166 | 1/C/34:38, 1/C/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_6B4V_167 | 1/C/71:79, 1/C/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_6B4V_168 | 1/EB/30:32, 1/EB/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_6B4V_169 | 1/EB/44:45, 1/EB/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_6B4V_170 | 1/EB/47:52, 1/EB/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_6B4V_171 | 1/EB/54:56, 1/EB/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_6B4V_172 | 1/EB/63:66, 1/EB/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_6B4V_173 | 1/EB/67:69, 1/EB/99:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_6B4V_174 | 1/EB/129A:131, 1/EB/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_6B4V_175 | 1/EB/132:136, 1/EB/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_6B4V_176 | 1/EB/146:153, 1/EB/168:176 | No text annotation Not in a motif group | ||
| IL_6B4V_177 | 1/EB/186A:186C, 1/EB/191E:191G | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_6B4V_178 | 1/EB/242:247, 1/EB/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_6B4V_179 | 1/EB/249:252, 1/EB/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_6B4V_180 | 1/EB/292:293, 1/EB/304:308 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_37712.2 | |
| IL_6B4V_181 | 1/EB/371:375, 1/EB/389:390 | C-loop Not in a motif group | homologous IL_6CZR_127 IL_75255.1 | |
| IL_6B4V_182 | 1/EB/375:377, 1/EB/386:389 | Single bulged G, near cWW Not in a motif group | geometric IL_6CZR_128 IL_52767.2 | |
| IL_6B4V_183 | 1/EB/409:417, 1/EB/426:433 | No text annotation Not in a motif group | homologous IL_6CZR_129 IL_58819.1 | |
| IL_6B4V_184 | 1/EB/446:450, 1/EB/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_6B4V_185 | 1/EB/450:455, 1/EB/477:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_6B4V_186 | 1/EB/504:511, 1/EB/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_6B4V_187 | 1/EB/514:521, 1/EB/528:537 | No text annotation Not in a motif group | ||
| IL_6B4V_188 | 1/EB/569:575, 1/EB/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_6B4V_189 | 1/EB/580:584, 1/EB/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_6B4V_190 | 1/EB/594:596, 1/EB/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_6B4V_191 | 1/EB/597:598, 1/EB/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_6B4V_192 | 1/EB/605:612, 1/EB/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_6B4V_193 | 1/EB/657:658, 1/EB/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_6B4V_194 | 1/EB/662:666, 1/EB/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_6B4V_195 | 1/EB/673:678, 1/EB/712:717 | No text annotation Not in a motif group | homologous IL_5J7L_034 IL_04668.1 | |
| IL_6B4V_196 | 1/EB/683:688, 1/EB/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_6B4V_197 | 1/EB/774:778, 1/EB/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_6B4V_198 | 1/EB/779:783, 1/EB/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_6B4V_199 | 1/EB/887:894, 1/EB/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_6B4V_200 | 1/EB/922:923, 1/EB/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_6B4V_201 | 1/EB/925:927, 1/EB/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_6B4V_202 | 1/EB/933:936, 1/EB/1379:1384 | No text annotation Not in a motif group | homologous IL_6CZR_149 IL_93211.1 | |
| IL_6B4V_203 | 1/EB/953:954, 1/EB/1226:1228 | Minor groove platform Not in a motif group | homologous IL_5J7L_042 IL_42622.2 | |
| IL_6B4V_204 | 1/EB/993:997, 1/EB/1044:1045 | Minor groove platform Not in a motif group | homologous IL_4LFB_039 IL_47078.1 | |
| IL_6B4V_205 | 1/EB/1047:1050, 1/EB/1208:1210 | Self complementary Not in a motif group | geometric IL_2D6F_001 IL_52767.2 | |
| IL_6B4V_206 | 1/EB/1050:1056, 1/EB/1204:1208 | No text annotation Not in a motif group | homologous IL_5J7L_047 NA | |
| IL_6B4V_207 | 1/EB/1057:1058, 1/EB/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_6B4V_208 | 1/EB/1060:1061, 1/EB/1195:1197 | Single bulged U Not in a motif group | geometric IL_4V9F_039 IL_83039.13 | |
| IL_6B4V_209 | 1/EB/1061:1063, 1/EB/1193:1195 | No text annotation Not in a motif group | homologous IL_4LFB_047 IL_95997.1 | |
| IL_6B4V_210 | 1/EB/1122:1128, 1/EB/1144:1151 | No text annotation Not in a motif group | ||
| IL_6B4V_211 | 1/EB/1158:1163, 1/EB/1173:1181 | No text annotation Not in a motif group | ||
| IL_6B4V_212 | 1/EB/1247:1253, 1/EB/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_6B4V_213 | 1/EB/1255:1258, 1/EB/1277:1282 | No text annotation Not in a motif group | homologous IL_6CZR_161 IL_75461.4 | |
| IL_6B4V_214 | 1/EB/1259:1263, 1/EB/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_6B4V_215 | 1/EB/1303:1308, 1/EB/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_6B4V_216 | 1/EB/1399:1401, 1/EB/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_6B4V_217 | 1/EB/1401:1405, 1/EB/1496:1501 | No text annotation Not in a motif group | ||
| IL_6B4V_218 | 1/EB/1405:1409, 1/EB/1491:1496 | No text annotation Not in a motif group | homologous IL_4LFB_058 NA | |
| IL_6B4V_219 | 1/EB/1412:1414, 1/EB/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_6B4V_220 | 1/EB/1416:1419, 1/EB/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_6B4V_221 | 1/EB/1431:1435, 1/EB/1466:1469 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
| IL_6B4V_222 | 1/EB/1435:1437, 1/EB/1464:1466 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 | |
| IL_6B4V_223 | 1/EB/1440:1447, 1/EB/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.2 | |
| IL_6B4V_224 | 1/FB/24:30, 1/FB/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7RQB_001 IL_66414.6 | |
| IL_6B4V_225 | 1/FB/36:37, 1/FB/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_6B4V_226 | 1/FB/41:45, 1/FB/433:438 | No text annotation Not in a motif group | ||
| IL_6B4V_227 | 1/FB/81:85, 1/FB/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_6B4V_228 | 1/FB/183:184, 1/FB/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_6B4V_229 | 1/FB/188:194, 1/FB/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_6B4V_230 | 1/FB/239:245, 1/FB/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_6B4V_232 | 1/FB/272:273B, 1/FB/363F:365 | No text annotation Not in a motif group | geometric IL_6CZR_136 IL_05564.2 | |
| IL_6B4V_233 | 1/FB/273E:280, 1/FB/360:363C | No text annotation Not in a motif group | ||
| IL_6B4V_234 | 1/FB/280:284, 1/FB/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_6B4V_235 | 1/FB/288:290, 1/FB/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_6B4V_236 | 1/FB/293:295, 1/FB/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_6B4V_237 | 1/FB/481:484, 1/FB/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_6B4V_238 | 1/FB/564:566, 1/FB/575:577 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_95997.1 | |
| IL_6B4V_239 | 1/FB/606:609B, 1/FB/618B:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_6B4V_240 | 1/FB/672:674, 1/FB/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_6B4V_241 | 1/FB/674:678, 1/FB/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.6 | |
| IL_6B4V_242 | 1/FB/697:698, 1/FB/763:765 | Single bulged A Not in a motif group | geometric IL_7A0S_016 IL_37497.2 | |
| IL_6B4V_243 | 1/FB/702:703, 1/FB/728:730 | Single bulged G Not in a motif group | geometric IL_4WF9_023 IL_00225.2 | |
| IL_6B4V_244 | 1/FB/703:707, 1/FB/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_6B4V_245 | 1/FB/738:741, 1/FB/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_6B4V_246 | 1/FB/775:777, 1/FB/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_6B4V_247 | 1/FB/837:838, 1/FB/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_6B4V_248 | 1/FB/844:846, 1/FB/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_6B4V_249 | 1/FB/846:850, 1/FB/928:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_6B4V_250 | 1/FB/858:862, 1/FB/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7RQB_027 IL_38862.1 | |
| IL_6B4V_251 | 1/FB/862:863, 1/FB/913:915 | Minor groove platform Not in a motif group | geometric IL_7RQB_028 IL_42622.2 | |
| IL_6B4V_252 | 1/FB/864:870, 1/FB/907:912 | No text annotation Not in a motif group | ||
| IL_6B4V_253 | 1/FB/875:877, 1/FB/899:902 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_6B4V_254 | 1/FB/877:880, 1/FB/897:899 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_411 IL_46796.1 | |
| IL_6B4V_255 | 1/FB/880:881, 1/FB/895:897 | Single bulged A Not in a motif group | geometric IL_4V88_409 IL_37497.2 | |
| IL_6B4V_256 | 1/FB/952:954, 1/FB/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_6B4V_257 | 1/FB/994:996, 1/FB/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_6B4V_258 | 1/FB/998:1002, 1/FB/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_6B4V_259 | 1/FB/1004:1011, 1/FB/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4WF9_037 IL_15861.7 | |
| IL_6B4V_260 | 1/FB/1011:1013, 1/FB/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.13 | |
| IL_6B4V_261 | 1/FB/1018:1024, 1/FB/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_6B4V_262 | 1/FB/1024:1030, 1/FB/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_6B4V_263 | 1/FB/1031:1034, 1/FB/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_6B4V_264 | 1/FB/1196:1198, 1/FB/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_6B4V_265 | 1/FB/1202:1206, 1/FB/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_6B4V_266 | 1/FB/1208:1215, 1/FB/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_6B4V_267 | 1/FB/1219:1221, 1/FB/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_6B4V_268 | 1/FB/1262:1269, 1/FB/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_6B4V_269 | 1/FB/1310:1313, 1/FB/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_6B4V_270 | 1/FB/1319:1323, 1/FB/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_6B4V_271 | 1/FB/1351:1355, 1/FB/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_6B4V_272 | 1/FB/1357:1361, 1/FB/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_4WF9_052 IL_17136.1 | |
| IL_6B4V_273 | 1/FB/1415:1416, 1/FB/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_6B4V_274 | 1/FB/1417:1421, 1/FB/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_6B4V_275 | 1/FB/1433:1435, 1/FB/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_6B4V_276 | 1/FB/1437:1440, 1/FB/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_6B4V_277 | 1/FB/1449:1450, 1/FB/1461:1462 | No text annotation Not in a motif group | ||
| IL_6B4V_278 | 1/FB/1450:1451, 1/FB/1459:1461 | Single bulged A Not in a motif group | geometric IL_7RQB_059 IL_37497.2 | |
| IL_6B4V_279 | 1/FB/1469:1473, 1/FB/1520:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_6B4V_280 | 1/FB/1481:1483, 1/FB/1506:1512 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_6B4V_281 | 1/FB/1489:1491, 1/FB/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_6B4V_282 | 1/FB/1526:1533, 1/FB/1538:1546B | No text annotation Not in a motif group | ||
| IL_6B4V_283 | 1/FB/1651:1656, 1/FB/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_6B4V_284 | 1/FB/1663:1665, 1/FB/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_6B4V_285 | 1/FB/1666:1669, 1/FB/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_6B4V_286 | 1/FB/1669:1674, 1/FB/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_7A0S_062 IL_82842.2 | |
| IL_6B4V_287 | 1/FB/1686:1691, 1/FB/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_6B4V_288 | 1/FB/1770:1771, 1/FB/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_6B4V_289 | 1/FB/1798:1804, 1/FB/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_6B4V_290 | 1/FB/1837:1840, 1/FB/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_6B4V_291 | 1/FB/1841:1842, 1/FB/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 IL_16396.2 | |
| IL_6B4V_292 | 1/FB/1846:1849, 1/FB/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_6B4V_293 | 1/FB/1851:1855, 1/FB/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_6B4V_294 | 1/FB/1856:1860, 1/FB/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_6B4V_295 | 1/FB/1933:1934, 1/FB/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 IL_59677.2 | |
| IL_6B4V_296 | 1/FB/1934:1945, 1/FB/1961:1964 | No text annotation Not in a motif group | geometric IL_4V9F_071 IL_81589.2 | |
| IL_6B4V_297 | 1/FB/2050:2052, 1/FB/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_6B4V_298 | 1/FB/2054:2057, 1/FB/2611:2615 | No text annotation Not in a motif group | homologous IL_7RQB_079 IL_01206.1 | |
| IL_6B4V_299 | 1/FB/2067:2069, 1/FB/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_6B4V_300 | 1/FB/2070:2071, 1/FB/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_6B4V_301 | 1/FB/2081:2083, 1/FB/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_6B4V_302 | 1/FB/2085:2087, 1/FB/2232:2234 | No text annotation Not in a motif group | homologous IL_7A0S_078 IL_95997.1 | |
| IL_6B4V_303 | 1/FB/2107:2110, 1/FB/2179:2182 | Self complementary Not in a motif group | geometric IL_3NDB_001 IL_30621.2 | |
| IL_6B4V_304 | 1/FB/2110:2120, 1/FB/2178:2179 | No text annotation Not in a motif group | geometric IL_3U4M_002 IL_45944.3 | |
| IL_6B4V_305 | 1/FB/2122:2123, 1/FB/2174:2176 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_6B4V_306 | 1/FB/2123:2129, 1/FB/2159:2174 | No text annotation Not in a motif group | ||
| IL_6B4V_307 | 1/FB/2129:2139, 1/FB/2152:2159 | No text annotation Not in a motif group | ||
| IL_6B4V_308 | 1/FB/2350:2353, 1/FB/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_6B4V_309 | 1/FB/2401:2403, 1/FB/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_6B4V_310 | 1/FB/2453:2454, 1/FB/2498:2500 | Single stack bend Not in a motif group | homologous IL_4WF9_089 IL_76488.2 | |
| IL_6B4V_311 | 1/FB/2454:2455, 1/FB/2496:2498 | Major groove platform Not in a motif group | geometric IL_4V9F_082 IL_27635.1 | |
| IL_6B4V_312 | 1/FB/2457:2459, 1/FB/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_6B4V_313 | 1/FB/2459:2461, 1/FB/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_092 IL_92788.2 | |
| IL_6B4V_314 | 1/FB/2466:2470, 1/FB/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_6B4V_315 | 1/FB/2507:2508, 1/FB/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_6B4V_316 | 1/FB/2510:2512, 1/FB/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_6B4V_317 | 1/FB/2512:2513, 1/FB/2571:2574 | No text annotation Not in a motif group | homologous IL_5J7L_341 IL_71530.2 | |
| IL_6B4V_318 | 1/FB/2522:2523, 1/FB/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_6B4V_319 | 1/FB/2588:2590, 1/FB/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_6B4V_320 | 1/FB/2591:2592, 1/FB/2601:2603 | Single bulged A Not in a motif group | geometric IL_4V9F_090 IL_37497.2 | |
| IL_6B4V_321 | 1/FB/2636:2640, 1/FB/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_6B4V_322 | 1/FB/2652:2658, 1/FB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 IL_16458.1 | |
| IL_6B4V_323 | 1/FB/2680:2684, 1/FB/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_6B4V_324 | 1/FB/2687:2691, 1/FB/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_6B4V_325 | 1/FB/2695:2696, 1/FB/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_6B4V_326 | 1/FB/2737:2742, 1/FB/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_6B4V_327 | 1/FB/2789:2811, 1/FB/2889:2894 | No text annotation Not in a motif group | ||
| IL_6B4V_328 | 1/FB/2838:2839, 1/FB/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_6B4V_329 | 1/FB/2843:2846, 1/FB/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_6B4V_330 | 1/FB/2847:2852, 1/FB/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_6B4V_331 | 1/GB/17:18, 1/GB/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_6B4V_332 | 1/GB/23:28, 1/GB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_6B4V_333 | 1/GB/30:31, 1/GB/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.6 | |
| IL_6B4V_334 | 1/GB/34:38, 1/GB/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_6B4V_335 | 1/GB/71:79, 1/GB/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6B4V_015 | Single bulged G, near cWW | ||
| IL_6B4V_064 | No text annotation | ||
| IL_6B4V_139 | No text annotation | ||
| IL_6B4V_231 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6B4V_001 | 1/A/46:47, 1/A/361:369, 1/A/392:395 | No text annotation Not in a motif group | ||
| J3_6B4V_002 | 1/A/586:588, 1/A/651:656, 1/A/750:755 | No text annotation Not in a motif group | ||
| J3_6B4V_003 | 1/A/672:673, 1/A/717:725, 1/A/732:734 | No text annotation Not in a motif group | ||
| J3_6B4V_004 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_6B4V_005 | 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | No text annotation Not in a motif group | ||
| J3_6B4V_006 | 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | No text annotation Not in a motif group | ||
| J3_6B4V_007 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation Not in a motif group | ||
| J3_6B4V_008 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation Not in a motif group | ||
| J3_6B4V_009 | 1/A/1073:1074, 1/A/1083:1087, 1/A/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_6B4V_010 | 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_6B4V_011 | 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | No text annotation Not in a motif group | homologous J3_5J7L_011 NA | |
| J3_6B4V_012 | 1/B/30:31, 1/B/474:481, 1/B/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_6B4V_013 | 1/B/56:57, 1/B/70:76, 1/B/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
| J3_6B4V_014 | 1/B/269:270D, 1/B/270X:271, 1/B/366:370 | No text annotation Not in a motif group | ||
| J3_6B4V_015 | 1/B/683:689, 1/B/773:775, 1/B/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_6B4V_016 | 1/B/698:700, 1/B/732:736, 1/B/760:763 | No text annotation Not in a motif group | homologous J3_5J7L_039 NA | |
| J3_6B4V_017 | 1/B/1298:1303, 1/B/1625:1627, 1/B/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_6B4V_018 | 1/B/1306:1309, 1/B/1605:1611, 1/B/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_6B4V_019 | 1/B/1344:1350, 1/B/1381:1385, 1/B/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_6B4V_020 | 1/B/2091:2093, 1/B/2196:2205, 1/B/2219:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_6B4V_021 | 1/B/2295:2299, 1/B/2317:2323, 1/B/2332:2337 | No text annotation Not in a motif group | ||
| J3_6B4V_022 | 1/B/2517:2520, 1/B/2545:2547, 1/B/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_6B4V_023 | 1/B/2814:2815, 1/B/2831:2836, 1/B/2882:2886 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA | |
| J3_6B4V_024 | 1/C/11:16, 1/C/68:70, 1/C/106:109 | No text annotation Not in a motif group | ||
| J3_6B4V_025 | 1/EB/46:47, 1/EB/361:369, 1/EB/392:395 | No text annotation Not in a motif group | ||
| J3_6B4V_026 | 1/EB/586:588, 1/EB/651:656, 1/EB/750:755 | No text annotation Not in a motif group | ||
| J3_6B4V_027 | 1/EB/672:673, 1/EB/717:725, 1/EB/732:734 | No text annotation Not in a motif group | ||
| J3_6B4V_028 | 1/EB/826:829, 1/EB/857:861, 1/EB/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_6B4V_029 | 1/EB/943:946, 1/EB/1235:1237, 1/EB/1337:1340 | No text annotation Not in a motif group | homologous J3_5J7L_005 NA | |
| J3_6B4V_030 | 1/EB/955:962, 1/EB/973:984, 1/EB/1221:1225 | No text annotation Not in a motif group | ||
| J3_6B4V_031 | 1/EB/990:993, 1/EB/1045:1047, 1/EB/1210:1215 | No text annotation Not in a motif group | ||
| J3_6B4V_032 | 1/EB/1063:1068, 1/EB/1107:1113, 1/EB/1187:1193 | No text annotation Not in a motif group | ||
| J3_6B4V_033 | 1/EB/1073:1074, 1/EB/1083:1087, 1/EB/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_6B4V_034 | 1/EB/1116:1118, 1/EB/1155:1158, 1/EB/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_6B4V_035 | 1/EB/1237:1241, 1/EB/1296:1303, 1/EB/1334:1337 | No text annotation Not in a motif group | ||
| J3_6B4V_036 | 1/FB/30:31, 1/FB/474:481, 1/FB/509:510 | No text annotation Not in a motif group | ||
| J3_6B4V_037 | 1/FB/56:57, 1/FB/70:76, 1/FB/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
| J3_6B4V_038 | 1/FB/269:270D, 1/FB/270X:271, 1/FB/366:370 | No text annotation Not in a motif group | ||
| J3_6B4V_039 | 1/FB/683:689, 1/FB/773:775, 1/FB/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_6B4V_040 | 1/FB/698:700, 1/FB/732:736, 1/FB/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_6B4V_041 | 1/FB/1298:1303, 1/FB/1625:1627, 1/FB/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_6B4V_042 | 1/FB/1306:1309, 1/FB/1605:1611, 1/FB/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_6B4V_043 | 1/FB/1344:1350, 1/FB/1381:1385, 1/FB/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_6B4V_044 | 1/FB/2091:2093, 1/FB/2196:2205, 1/FB/2219:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_6B4V_045 | 1/FB/2295:2299, 1/FB/2317:2323, 1/FB/2332:2337 | No text annotation Not in a motif group | ||
| J3_6B4V_046 | 1/FB/2517:2520, 1/FB/2545:2547, 1/FB/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_6B4V_047 | 1/FB/2814:2815, 1/FB/2831:2836, 1/FB/2882:2886 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA | |
| J3_6B4V_048 | 1/GB/11:16, 1/GB/68:71, 1/GB/105:109 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: