5LKS Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5LKS_001 | 1/L5/29:53 | No text annotation Not in a motif group | ||
| HL_5LKS_002 | 1/L5/68:73 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_5LKS_003 | 1/L5/89:95 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_5LKS_004 | 1/L5/129:139 | No text annotation Not in a motif group | ||
| HL_5LKS_005 | 1/L5/204:211 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_5LKS_006 | 1/L5/222:226 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_5LKS_007 | 1/L5/230:238 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.9 | |
| HL_5LKS_008 | 1/L5/288:299 | No text annotation Not in a motif group | ||
| HL_5LKS_009 | 1/L5/314:323 | No text annotation Not in a motif group | ||
| HL_5LKS_010 | 1/L5/368:373 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.2 | |
| HL_5LKS_011 | 1/L5/393:398 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.2 | |
| HL_5LKS_015 | 1/L5/1170:1191 | No text annotation Not in a motif group | ||
| HL_5LKS_016 | 1/L5/1316:1327 | No text annotation Not in a motif group | ||
| HL_5LKS_017 | 1/L5/1363:1374 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_5LKS_018 | 1/L5/1389:1394 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.2 | |
| HL_5LKS_019 | 1/L5/1401:1416 | No text annotation Not in a motif group | ||
| HL_5LKS_020 | 1/L5/1435:1449 | No text annotation Not in a motif group | ||
| HL_5LKS_021 | 1/L5/1479:1486 | No text annotation Not in a motif group | ||
| HL_5LKS_022 | 1/L5/1561:1566 | No text annotation Not in a motif group | homologous HL_8C3A_019 HL_42097.2 | |
| HL_5LKS_023 | 1/L5/1592:1603 | No text annotation Not in a motif group | ||
| HL_5LKS_024 | 1/L5/1626:1636 | No text annotation Not in a motif group | ||
| HL_5LKS_025 | 1/L5/1675:1680 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_94803.2 | |
| HL_5LKS_026 | 1/L5/1745:1785 | No text annotation Not in a motif group | ||
| HL_5LKS_028 | 1/L5/1864:1870 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.2 | |
| HL_5LKS_029 | 1/L5/1885:1894 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_5LKS_030 | 1/L5/1955:2028 | No text annotation Not in a motif group | ||
| HL_5LKS_032 | 1/L5/2317:2322 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.2 | |
| HL_5LKS_033 | 1/L5/2376:2384 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_89380.2 | |
| HL_5LKS_034 | 1/L5/2414:2430 | No text annotation Not in a motif group | ||
| HL_5LKS_035 | 1/L5/2458:2463 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_5LKS_036 | 1/L5/2479:2499 | No text annotation Not in a motif group | ||
| HL_5LKS_037 | 1/L5/2523:2532 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_5LKS_038 | 1/L5/2557:2570 | No text annotation Not in a motif group | ||
| HL_5LKS_039 | 1/L5/2577:2584 | No text annotation Not in a motif group | ||
| HL_5LKS_040 | 1/L5/2624:2632 | No text annotation Not in a motif group | ||
| HL_5LKS_041 | 1/L5/2663:2671 | No text annotation Not in a motif group | ||
| HL_5LKS_042 | 1/L5/2738:2742 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.1 | |
| HL_5LKS_043 | 1/L5/2792:2799 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.2 | |
| HL_5LKS_044 | 1/L5/2810:2816 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.2 | |
| HL_5LKS_045 | 1/L5/2872:2877 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_5LKS_047 | 1/L5/3638:3650 | No text annotation Not in a motif group | geometric HL_7A0S_045 HL_43667.1 | |
| HL_5LKS_048 | 1/L5/3668:3674 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.2 | |
| HL_5LKS_049 | 1/L5/3722:3731 | No text annotation Not in a motif group | ||
| HL_5LKS_050 | 1/L5/3796:3804 | No text annotation Not in a motif group | geometric HL_5TBW_050 HL_51824.1 | |
| HL_5LKS_051 | 1/L5/3839:3843 | No text annotation Not in a motif group | ||
| HL_5LKS_052 | 1/L5/3873:3882 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.6 | |
| HL_5LKS_054 | 1/L5/4097:4112 | No text annotation Not in a motif group | ||
| HL_5LKS_055 | 1/L5/4138:4146 | No text annotation Not in a motif group | ||
| HL_5LKS_056 | 1/L5/4191:4204 | No text annotation Not in a motif group | ||
| HL_5LKS_057 | 1/L5/4210:4222 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_5LKS_058 | 1/L5/4250:4258 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.4 | |
| HL_5LKS_059 | 1/L5/4270:4277 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.2 | |
| HL_5LKS_060 | 1/L5/4301:4309 | No text annotation Not in a motif group | homologous HL_5TBW_058 HL_92229.2 | |
| HL_5LKS_061 | 1/L5/4320:4327 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_24068.2 | |
| HL_5LKS_062 | 1/L5/4352:4362 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_5LKS_063 | 1/L5/4416:4426 | No text annotation Not in a motif group | ||
| HL_5LKS_064 | 1/L5/4474:4481 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_91104.1 | |
| HL_5LKS_065 | 1/L5/4497:4503 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_43656.2 | |
| HL_5LKS_066 | 1/L5/4540:4545 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.2 | |
| HL_5LKS_067 | 1/L5/4603:4608 | No text annotation Not in a motif group | homologous HL_8C3A_066 HL_42097.2 | |
| HL_5LKS_068 | 1/L5/4645:4652 | No text annotation Not in a motif group | ||
| HL_5LKS_069 | 1/L5/4688:4702 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.7 | |
| HL_5LKS_071 | 1/L5/4906:4915 | No text annotation Not in a motif group | ||
| HL_5LKS_072 | 1/L5/4975:4983 | No text annotation Not in a motif group | homologous HL_5TBW_070 HL_27930.1 | |
| HL_5LKS_073 | 1/L5/5021:5028 | No text annotation Not in a motif group | ||
| HL_5LKS_074 | 1/L7/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_5LKS_075 | 1/L7/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.2 | |
| HL_5LKS_076 | 1/L8/45:58 | No text annotation Not in a motif group | ||
| HL_5LKS_077 | 1/L8/68:90 | No text annotation Not in a motif group | ||
| HL_5LKS_080 | 1/S2/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_5LKS_081 | 1/S2/69:80 | No text annotation Not in a motif group | ||
| HL_5LKS_082 | 1/S2/156:162 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_5LKS_086 | 1/S2/377:387 | No text annotation Not in a motif group | ||
| HL_5LKS_087 | 1/S2/416:421 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_5LKS_088 | 1/S2/441:452 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_5LKS_089 | 1/S2/461:468 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_24068.2 | |
| HL_5LKS_090 | 1/S2/496:506 | No text annotation Not in a motif group | ||
| HL_5LKS_092 | 1/S2/611:632 | No text annotation Not in a motif group | ||
| HL_5LKS_093 | 1/S2/820:828 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_5LKS_096 | 1/S2/957:966 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_5LKS_097 | 1/S2/993:1000 | No text annotation Not in a motif group | ||
| HL_5LKS_098 | 1/S2/1054:1064 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_5LKS_099 | 1/S2/1112:1121 | No text annotation Not in a motif group | ||
| HL_5LKS_100 | 1/S2/1141:1146 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.2 | |
| HL_5LKS_101 | 1/S2/1176:1185 | No text annotation Not in a motif group | ||
| HL_5LKS_102 | 1/S2/1245:1254 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_5LKS_103 | 1/S2/1353:1358 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.2 | |
| HL_5LKS_104 | 1/S2/1365:1374 | No text annotation Not in a motif group | ||
| HL_5LKS_106 | 1/S2/1460:1466 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_5LKS_107 | 1/S2/1565:1570 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.2 | |
| HL_5LKS_108 | 1/S2/1614:1625 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_5LKS_109 | 1/S2/1657:1667 | No text annotation Not in a motif group | geometric HL_5J7L_029 HL_96366.1 | |
| HL_5LKS_111 | 1/S2/1845:1854 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5LKS_012 | No text annotation | ||
| HL_5LKS_013 | No text annotation | ||
| HL_5LKS_014 | No text annotation | ||
| HL_5LKS_027 | No text annotation | ||
| HL_5LKS_031 | No text annotation | ||
| HL_5LKS_046 | No text annotation | ||
| HL_5LKS_053 | No text annotation | ||
| HL_5LKS_070 | No text annotation | ||
| HL_5LKS_078 | No text annotation | ||
| HL_5LKS_079 | No text annotation | ||
| HL_5LKS_083 | No text annotation | ||
| HL_5LKS_084 | No text annotation | ||
| HL_5LKS_085 | No text annotation | ||
| HL_5LKS_091 | No text annotation | ||
| HL_5LKS_094 | No text annotation | ||
| HL_5LKS_095 | No text annotation | ||
| HL_5LKS_105 | No text annotation | ||
| HL_5LKS_110 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5LKS_001 | 1/L5/5:9, 1/L8/147:152 | No text annotation Not in a motif group | ||
| IL_5LKS_002 | 1/L5/11:14, 1/L8/143:145 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_5LKS_003 | 1/L5/16:18, 1/L8/139:141 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_5LKS_004 | 1/L5/26:27, 1/L5/55:57 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_5LKS_005 | 1/L5/81:88, 1/L5/96:102 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_5LKS_006 | 1/L5/118:123, 1/L5/146:153 | No text annotation Not in a motif group | ||
| IL_5LKS_007 | 1/L5/125:126, 1/L5/142:144 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_5LKS_008 | 1/L5/168:173, 1/L5/263:267 | No text annotation Not in a motif group | ||
| IL_5LKS_009 | 1/L5/174:189, 1/L5/252:262 | No text annotation Not in a motif group | ||
| IL_5LKS_010 | 1/L5/195:196, 1/L5/244:246 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_5LKS_011 | 1/L5/199:201, 1/L5/214:215 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.14 | |
| IL_5LKS_012 | 1/L5/339:343, 1/L8/31:33 | No text annotation Not in a motif group | ||
| IL_5LKS_013 | 1/L5/348:350, 1/L8/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.3 | |
| IL_5LKS_014 | 1/L5/387:390, 1/L5/401:414 | No text annotation Not in a motif group | geometric IL_4WF9_015 IL_60992.6 | |
| IL_5LKS_015 | 1/L5/415:421, 1/L8/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_5LKS_016 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation Not in a motif group | ||
| IL_5LKS_017 | 1/L5/481:487, 1/L5/669:673 | No text annotation Not in a motif group | ||
| IL_5LKS_018 | 1/L5/487:489, 1/L5/664:669 | No text annotation Not in a motif group | ||
| IL_5LKS_019 | 1/L5/489:493, 1/L5/661:664 | No text annotation Not in a motif group | ||
| IL_5LKS_020 | 1/L5/493:505, 1/L5/653:661 | No text annotation Not in a motif group | ||
| IL_5LKS_021 | 1/L5/706:709, 1/L5/1287:1291 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4EYA_010 IL_30621.3 | |
| IL_5LKS_022 | 1/L5/721:724, 1/L5/942:947 | No text annotation Not in a motif group | ||
| IL_5LKS_023 | 1/L5/1073:1076, 1/L5/1235:1239 | No text annotation Not in a motif group | ||
| IL_5LKS_024 | 1/L5/1076:1086, 1/L5/1211:1235 | No text annotation Not in a motif group | ||
| IL_5LKS_025 | 1/L5/1086:1088, 1/L5/1208:1211 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_5LKS_026 | 1/L5/1357:1360, 1/L5/1379:1382 | No text annotation Not in a motif group | ||
| IL_5LKS_027 | 1/L5/1360:1362, 1/L5/1375:1379 | No text annotation Not in a motif group | geometric IL_5UNE_009 IL_53251.2 | |
| IL_5LKS_028 | 1/L5/1425:1429, 1/L5/1455:1460 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_5LKS_029 | 1/L5/1430:1435, 1/L5/1449:1454 | No text annotation Not in a motif group | ||
| IL_5LKS_030 | 1/L5/1467:1469, 1/L5/1495:1498 | No text annotation Not in a motif group | geometric IL_5E81_376 IL_95997.1 | |
| IL_5LKS_031 | 1/L5/1474:1476, 1/L5/1489:1490 | Single base bend Not in a motif group | geometric IL_5IBB_340 IL_92001.1 | |
| IL_5LKS_032 | 1/L5/1520:1522, 1/L5/1655:1657 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_95997.1 | |
| IL_5LKS_033 | 1/L5/1522:1526, 1/L5/1648:1655 | No text annotation Not in a motif group | homologous IL_5TBW_028 IL_17470.6 | |
| IL_5LKS_034 | 1/L5/1550:1551, 1/L5/1576:1578 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.3 | |
| IL_5LKS_035 | 1/L5/1551:1557, 1/L5/1570:1576 | No text annotation Not in a motif group | ||
| IL_5LKS_036 | 1/L5/1586:1589, 1/L5/1605:1607 | Major groove platform with extra cWW Not in a motif group | geometric IL_5TBW_031 IL_05564.2 | |
| IL_5LKS_037 | 1/L5/1590:1592, 1/L5/1603:1604 | Single bulged U Not in a motif group | homologous IL_5TBW_032 IL_83039.14 | |
| IL_5LKS_038 | 1/L5/1624:1626, 1/L5/1636:1640 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
| IL_5LKS_039 | 1/L5/1671:1674, 1/L5/1681:1684 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.3 | |
| IL_5LKS_040 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation Not in a motif group | ||
| IL_5LKS_042 | 1/L5/1858:1860, 1/L5/1874:1876 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_5LKS_043 | 1/L5/1903:1909, 1/L5/2067:2073 | No text annotation Not in a motif group | ||
| IL_5LKS_044 | 1/L5/1911:1914, 1/L5/2049:2065 | No text annotation Not in a motif group | ||
| IL_5LKS_045 | 1/L5/1946:1948, 1/L5/2035:2036 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.14 | |
| IL_5LKS_046 | 1/L5/2083:2085, 1/L5/2272:2273 | No text annotation Not in a motif group | ||
| IL_5LKS_047 | 1/L5/2298:2302, 1/L5/2333:2336 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4EYA_010 IL_30621.3 | |
| IL_5LKS_048 | 1/L5/2302:2309, 1/L5/2329:2333 | No text annotation Not in a motif group | ||
| IL_5LKS_049 | 1/L5/2312:2314, 1/L5/2325:2326 | Single bulged A Not in a motif group | geometric IL_5WWT_001 IL_37497.3 | |
| IL_5LKS_050 | 1/L5/2358:2364, 1/L5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_5LKS_051 | 1/L5/2542:2548, 1/L5/2771:2774 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.3 | |
| IL_5LKS_052 | 1/L5/2610:2617, 1/L5/2720:2729 | No text annotation Not in a motif group | ||
| IL_5LKS_053 | 1/L5/2646:2648, 1/L5/2685:2688 | Decoding loop related Not in a motif group | geometric IL_2O3X_003 IL_82842.2 | |
| IL_5LKS_054 | 1/L5/2651:2653, 1/L5/2681:2682 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_00225.3 | |
| IL_5LKS_055 | 1/L5/2656:2662, 1/L5/2672:2678 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_5LKS_056 | 1/L5/2831:2838, 1/L5/3850:3854 | No text annotation Not in a motif group | ||
| IL_5LKS_057 | 1/L5/2867:2872, 1/L5/2877:2883 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_5LKS_058 | 1/L5/2888:2891, 1/L5/3610:3613 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.3 | |
| IL_5LKS_059 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_5LKS_060 | 1/L5/3632:3633, 1/L5/3827:3829 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_37497.3 | |
| IL_5LKS_061 | 1/L5/3660:3665, 1/L5/3677:3684 | No text annotation Not in a motif group | homologous IL_8C3A_088 IL_64509.1 | |
| IL_5LKS_062 | 1/L5/3700:3703, 1/L5/3749:3750 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_5LKS_063 | 1/L5/3703:3706, 1/L5/3744:3749 | Major groove platform with intercalation Not in a motif group | geometric IL_7A0S_102 IL_58502.1 | |
| IL_5LKS_064 | 1/L5/3780:3781, 1/L5/3811:3814 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_089 IL_59677.2 | |
| IL_5LKS_065 | 1/L5/3781:3796, 1/L5/3804:3811 | No text annotation Not in a motif group | ||
| IL_5LKS_066 | 1/L5/3893:3900, 1/L5/4561:4567 | No text annotation Not in a motif group | ||
| IL_5LKS_067 | 1/L5/3900:3902, 1/L5/4558:4561 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_092 IL_54678.5 | |
| IL_5LKS_068 | 1/L5/3913:3918, 1/L5/4383:4389 | No text annotation Not in a motif group | ||
| IL_5LKS_069 | 1/L5/3926:3929, 1/L5/4181:4185 | No text annotation Not in a motif group | ||
| IL_5LKS_070 | 1/L5/4081:4088, 1/L5/4161:4165 | No text annotation Not in a motif group | ||
| IL_5LKS_071 | 1/L5/4243:4246, 1/L5/4262:4267 | No text annotation Not in a motif group | ||
| IL_5LKS_072 | 1/L5/4294:4298, 1/L5/4312:4316 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_5LKS_073 | 1/L5/4347:4352, 1/L5/4362:4365 | No text annotation Not in a motif group | ||
| IL_5LKS_074 | 1/L5/4403:4407, 1/L5/4435:4440 | No text annotation Not in a motif group | ||
| IL_5LKS_075 | 1/L5/4412:4416, 1/L5/4426:4430 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_5LKS_076 | 1/L5/4453:4454, 1/L5/4526:4528 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.2 | |
| IL_5LKS_077 | 1/L5/4456:4458, 1/L5/4520:4524 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_108 IL_90933.2 | |
| IL_5LKS_078 | 1/L5/4458:4461, 1/L5/4515:4520 | No text annotation Not in a motif group | ||
| IL_5LKS_079 | 1/L5/4495:4497, 1/L5/4503:4505 | No text annotation Not in a motif group | homologous IL_5TBW_112 IL_95997.1 | |
| IL_5LKS_080 | 1/L5/4537:4539, 1/L5/4546:4549 | No text annotation Not in a motif group | geometric IL_4V8Q_188 IL_95997.1 | |
| IL_5LKS_081 | 1/L5/4580:4582, 1/L5/4721:4723 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_51629.2 | |
| IL_5LKS_082 | 1/L5/4582:4586, 1/L5/4716:4721 | Triple sheared Not in a motif group | geometric IL_5J7L_274 IL_56467.8 | |
| IL_5LKS_083 | 1/L5/4590:4592, 1/L5/4618:4620 | No text annotation Not in a motif group | homologous IL_5TBW_115 IL_95997.1 | |
| IL_5LKS_084 | 1/L5/4596:4603, 1/L5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_5LKS_085 | 1/L5/4624:4629, 1/L5/4669:4673 | No text annotation Not in a motif group | ||
| IL_5LKS_086 | 1/L5/4632:4637, 1/L5/4662:4666 | No text annotation Not in a motif group | homologous IL_8C3A_127 IL_17136.1 | |
| IL_5LKS_087 | 1/L5/4637:4640, 1/L5/4659:4662 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_003 IL_30621.3 | |
| IL_5LKS_088 | 1/L5/4641:4643, 1/L5/4654:4658 | No text annotation Not in a motif group | geometric IL_4M4O_001 IL_95997.1 | |
| IL_5LKS_089 | 1/L5/4679:4685, 1/L5/4705:4711 | No text annotation Not in a motif group | ||
| IL_5LKS_090 | 1/L5/4737:4746, 1/L5/4954:4962 | No text annotation Not in a motif group | ||
| IL_5LKS_091 | 1/L5/4755:4766, 1/L5/4868:4878 | No text annotation Not in a motif group | ||
| IL_5LKS_092 | 1/L5/4891:4898, 1/L5/4922:4928 | No text annotation Not in a motif group | ||
| IL_5LKS_093 | 1/L5/4898:4901, 1/L5/4920:4922 | No text annotation Not in a motif group | ||
| IL_5LKS_094 | 1/L5/4972:4975, 1/L5/4983:4986 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.3 | |
| IL_5LKS_095 | 1/L5/4995:4997, 1/L5/5053:5056 | No text annotation Not in a motif group | geometric IL_7A0S_011 IL_95997.1 | |
| IL_5LKS_096 | 1/L5/5012:5017, 1/L5/5032:5036 | No text annotation Not in a motif group | ||
| IL_5LKS_097 | 1/L7/15:16, 1/L7/62:64 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.3 | |
| IL_5LKS_098 | 1/L7/21:27, 1/L7/52:57 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_5LKS_099 | 1/L7/28:32, 1/L7/45:51 | No text annotation Not in a motif group | ||
| IL_5LKS_100 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_4V9F_104 IL_58103.6 | |
| IL_5LKS_101 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_5LKS_102 | 1/L7/79:81, 1/L7/95:97 | No text annotation Not in a motif group | ||
| IL_5LKS_103 | 1/L7/81:85, 1/L7/92:95 | No text annotation Not in a motif group | ||
| IL_5LKS_104 | 1/L8/64:67, 1/L8/91:95 | No text annotation Not in a motif group | ||
| IL_5LKS_105 | 1/S2/23:25, 1/S2/649:651 | No text annotation Not in a motif group | geometric IL_4M4O_001 IL_95997.1 | |
| IL_5LKS_106 | 1/S2/26:28, 1/S2/646:648 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_5LKS_107 | 1/S2/34:36, 1/S2/519:521 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_5LKS_108 | 1/S2/36:40, 1/S2/514:519 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_5LKS_109 | 1/S2/41:48, 1/S2/478:481 | No text annotation Not in a motif group | ||
| IL_5LKS_110 | 1/S2/56:62, 1/S2/86:89 | No text annotation Not in a motif group | ||
| IL_5LKS_111 | 1/S2/63:69, 1/S2/80:85 | No text annotation Not in a motif group | ||
| IL_5LKS_112 | 1/S2/108:112, 1/S2/349:353 | No text annotation Not in a motif group | ||
| IL_5LKS_113 | 1/S2/112:116, 1/S2/347:349 | Multiple bulged bases, near cWW Not in a motif group | geometric IL_5M0H_002 IL_51629.2 | |
| IL_5LKS_114 | 1/S2/116:122, 1/S2/342:347 | No text annotation Not in a motif group | ||
| IL_5LKS_115 | 1/S2/145:152, 1/S2/166:174 | No text annotation Not in a motif group | ||
| IL_5LKS_116 | 1/S2/152:155, 1/S2/163:166 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.3 | |
| IL_5LKS_117 | 1/S2/317:320, 1/S2/331:333 | No text annotation Not in a motif group | ||
| IL_5LKS_118 | 1/S2/358:364, 1/S2/396:404 | No text annotation Not in a motif group | ||
| IL_5LKS_119 | 1/S2/366:372, 1/S2/392:394 | No text annotation Not in a motif group | geometric IL_4ERD_003 IL_70149.1 | |
| IL_5LKS_120 | 1/S2/411:413, 1/S2/424:429 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_5LKS_121 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_5LKS_122 | 1/S2/487:489, 1/S2/511:512 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.14 | |
| IL_5LKS_123 | 1/S2/491:496, 1/S2/506:509 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
| IL_5LKS_124 | 1/S2/527:534, 1/S2/549:558 | No text annotation Not in a motif group | ||
| IL_5LKS_125 | 1/S2/599:609, 1/S2/634:637 | No text annotation Not in a motif group | ||
| IL_5LKS_126 | 1/S2/663:665, 1/S2/1162:1164 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_51629.2 | |
| IL_5LKS_127 | 1/S2/676:682, 1/S2/1023:1029 | No text annotation Not in a motif group | ||
| IL_5LKS_128 | 1/S2/802:803, 1/S2/860:863 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_5LKS_129 | 1/S2/805:807, 1/S2/856:858 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_5LKS_130 | 1/S2/807:816, 1/S2/848:856 | No text annotation Not in a motif group | ||
| IL_5LKS_131 | 1/S2/923:927, 1/S2/1014:1019 | No text annotation Not in a motif group | ||
| IL_5LKS_132 | 1/S2/927:931, 1/S2/1010:1014 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_5LKS_133 | 1/S2/931:937, 1/S2/1005:1010 | Tandem non-canonical cWW pairs with near WC pairs Not in a motif group | geometric IL_4EYA_005 IL_04668.1 | |
| IL_5LKS_134 | 1/S2/941:947, 1/S2/979:985 | No text annotation Not in a motif group | ||
| IL_5LKS_135 | 1/S2/952:956, 1/S2/967:974 | Kink-turn Not in a motif group | homologous IL_4V88_434 IL_45067.2 | |
| IL_5LKS_136 | 1/S2/1041:1047, 1/S2/1071:1074 | No text annotation Not in a motif group | ||
| IL_5LKS_137 | 1/S2/1047:1051, 1/S2/1067:1071 | tSH-tHW-tHS Not in a motif group | geometric IL_5J7L_037 IL_17136.1 | |
| IL_5LKS_138 | 1/S2/1096:1104, 1/S2/1128:1136 | No text annotation Not in a motif group | ||
| IL_5LKS_139 | 1/S2/1107:1110, 1/S2/1123:1125 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_82068.2 | |
| IL_5LKS_140 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_5LKS_141 | 1/S2/1203:1205, 1/S2/1693:1696 | No text annotation Not in a motif group | ||
| IL_5LKS_142 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.3 | |
| IL_5LKS_143 | 1/S2/1213:1217, 1/S2/1681:1686 | No text annotation Not in a motif group | ||
| IL_5LKS_144 | 1/S2/1232:1236, 1/S2/1521:1526 | No text annotation Not in a motif group | ||
| IL_5LKS_145 | 1/S2/1328:1333, 1/S2/1498:1501 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.3 | |
| IL_5LKS_146 | 1/S2/1333:1336, 1/S2/1491:1498 | No text annotation Not in a motif group | homologous IL_8C3A_457 IL_58764.3 | |
| IL_5LKS_147 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.3 | |
| IL_5LKS_148 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_5LKS_149 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform Not in a motif group | homologous IL_4V88_454 IL_93353.1 | |
| IL_5LKS_150 | 1/S2/1395:1399, 1/S2/1447:1450 | No text annotation Not in a motif group | ||
| IL_5LKS_151 | 1/S2/1550:1558, 1/S2/1577:1583 | No text annotation Not in a motif group | ||
| IL_5LKS_152 | 1/S2/1559:1563, 1/S2/1572:1576 | No text annotation Not in a motif group | ||
| IL_5LKS_153 | 1/S2/1604:1611, 1/S2/1629:1635 | No text annotation Not in a motif group | homologous IL_8C3A_469 IL_10092.1 | |
| IL_5LKS_154 | 1/S2/1611:1612, 1/S2/1627:1629 | Single stack bend Not in a motif group | geometric IL_5TBW_009 IL_76488.2 | |
| IL_5LKS_155 | 1/S2/1705:1708, 1/S2/1826:1829 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.3 | |
| IL_5LKS_156 | 1/S2/1708:1713, 1/S2/1820:1826 | No text annotation Not in a motif group | ||
| IL_5LKS_157 | 1/S2/1713:1717, 1/S2/1816:1820 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_5LKS_158 | 1/S2/1717:1723, 1/S2/1811:1816 | No text annotation Not in a motif group | ||
| IL_5LKS_159 | 1/S2/1729:1733, 1/S2/1801:1805 | No text annotation Not in a motif group | ||
| IL_5LKS_160 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_5LKS_161 | 1/S2/1739:1742, 1/S2/1792:1795 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_473 IL_30621.3 | |
| IL_5LKS_162 | 1/S2/1742:1748, 1/S2/1786:1792 | No text annotation Not in a motif group | ||
| IL_5LKS_163 | 1/S2/1749:1751, 1/S2/1782:1785 | No text annotation Not in a motif group | geometric IL_5J7L_061 IL_95997.1 | |
| IL_5LKS_164 | 1/S2/1751:1752, 1/S2/1780:1782 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5LKS_041 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5LKS_001 | 1/L5/379:387, 1/L5/414:415, 1/L8/19:21 | No text annotation Not in a motif group | ||
| J3_5LKS_002 | 1/L5/448:456, 1/L5/700:705, 1/L5/1292:1298 | No text annotation Not in a motif group | ||
| J3_5LKS_003 | 1/L5/978:983, 1/L5/1070:1073, 1/L5/1239:1276 | No text annotation Not in a motif group | ||
| J3_5LKS_004 | 1/L5/1529:1537, 1/L5/1622:1624, 1/L5/1640:1645 | No text annotation Not in a motif group | ||
| J3_5LKS_005 | 1/L5/1545:1549, 1/L5/1579:1586, 1/L5/1607:1614 | No text annotation Not in a motif group | ||
| J3_5LKS_006 | 1/L5/2392:2400, 1/L5/2804:2808, 1/L5/2818:2823 | No text annotation Not in a motif group | ||
| J3_5LKS_007 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation Not in a motif group | ||
| J3_5LKS_008 | 1/L5/2405:2411, 1/L5/2433:2441, 1/L5/2781:2785 | No text annotation Not in a motif group | ||
| J3_5LKS_009 | 1/L5/2844:2855, 1/L5/3837:3839, 1/L5/3843:3844 | No text annotation Not in a motif group | ||
| J3_5LKS_010 | 1/L5/3696:3698, 1/L5/3752:3780, 1/L5/3814:3819 | No text annotation Not in a motif group | ||
| J3_5LKS_011 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | No text annotation Not in a motif group | ||
| J3_5LKS_012 | 1/L5/4241:4243, 1/L5/4267:4269, 1/L5/4278:4283 | No text annotation Not in a motif group | ||
| J3_5LKS_013 | 1/L5/4970:4972, 1/L5/4986:4994, 1/L5/5057:5063 | No text annotation Not in a motif group | ||
| J3_5LKS_014 | 1/L7/9:14, 1/L7/65:68, 1/L7/107:110 | No text annotation Not in a motif group | ||
| J3_5LKS_015 | 1/L8/43:45, 1/L8/58:64, 1/L8/95:100 | No text annotation Not in a motif group | ||
| J3_5LKS_016 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation Not in a motif group | ||
| J3_5LKS_017 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation Not in a motif group | ||
| J3_5LKS_018 | 1/S2/1091:1096, 1/S2/1136:1141, 1/S2/1146:1158 | No text annotation Not in a motif group | ||
| J3_5LKS_019 | 1/S2/1222:1232, 1/S2/1526:1532, 1/S2/1638:1644 | No text annotation Not in a motif group | ||
| J3_5LKS_020 | 1/S2/1237:1245, 1/S2/1254:1267, 1/S2/1515:1520 | No text annotation Not in a motif group | ||
| J3_5LKS_021 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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