Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7TOR_0011/A18S/7:17No text annotation
Not in a motif group
geometric
HL_4V88_186
HL_67265.4
HL_7TOR_0021/A18S/69:80No text annotation
Not in a motif group
HL_7TOR_0031/A18S/156:162No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98557.5
HL_7TOR_0041/A18S/197:202No text annotation
Not in a motif group
geometric
HL_7RQB_047
HL_43074.18
HL_7TOR_0051/A18S/288:295T-loop with 1 bulged base
Not in a motif group
geometric
HL_4V88_191
HL_68493.6
HL_7TOR_0071/A18S/377:387No text annotation
Not in a motif group
HL_7TOR_0081/A18S/416:421No text annotation
Not in a motif group
geometric
HL_4V88_194
HL_18785.1
HL_7TOR_0091/A18S/441:452No text annotation
Not in a motif group
geometric
HL_4V88_195
HL_22443.1
HL_7TOR_0101/A18S/462:467UNCG
Not in a motif group
geometric
HL_2HW8_001
HL_79299.11
HL_7TOR_0111/A18S/498:504No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_58912.1
HL_7TOR_0121/A18S/539:544No text annotation
Not in a motif group
geometric
HL_5J7L_179
HL_32527.3
HL_7TOR_0131/A18S/569:581No text annotation
Not in a motif group
geometric
HL_4V88_199
HL_17086.2
HL_7TOR_0141/A18S/618:623Other HL
Not in a motif group
geometric
HL_4V88_200
HL_43074.18
HL_7TOR_0151/A18S/820:828No text annotation
Not in a motif group
geometric
HL_4V88_203
HL_72066.1
HL_7TOR_0161/A18S/833:841No text annotation
Not in a motif group
HL_7TOR_0171/A18S/885:901No text annotation
Not in a motif group
HL_7TOR_0181/A18S/957:966No text annotation
Not in a motif group
geometric
HL_4V88_206
HL_87219.4
HL_7TOR_0191/A18S/994:999Other HL
Not in a motif group
geometric
HL_4V88_207
HL_43074.18
HL_7TOR_0201/A18S/1054:1064No text annotation
Not in a motif group
geometric
HL_4LFB_017
HL_87219.4
HL_7TOR_0211/A18S/1114:1119No text annotation
Not in a motif group
HL_7TOR_0221/A18S/1141:1146Other HL
Not in a motif group
geometric
HL_4V88_210
HL_43074.18
HL_7TOR_0231/A18S/1178:1183GNRA
Not in a motif group
geometric
HL_3LQX_001
HL_43074.18
HL_7TOR_0241/A18S/1245:1254No text annotation
Not in a motif group
geometric
HL_4WF9_011
HL_98557.5
HL_7TOR_0251/A18S/1295:1304No text annotation
Not in a motif group
HL_7TOR_0261/A18S/1353:1358GNRA
Not in a motif group
geometric
HL_5J7L_027
HL_43074.18
HL_7TOR_0271/A18S/1366:1373No text annotation
Not in a motif group
geometric
HL_4LFB_025
HL_54035.7
HL_7TOR_0281/A18S/1416:1424No text annotation
Not in a motif group
HL_7TOR_0291/A18S/1460:1466No text annotation
Not in a motif group
geometric
HL_1F1T_001
HL_91287.1
HL_7TOR_0301/A18S/1565:1570GNRA
Not in a motif group
geometric
HL_4V9F_015
HL_43074.18
HL_7TOR_0311/A18S/1614:1625No text annotation
Not in a motif group
geometric
HL_4V88_219
HL_32458.3
HL_7TOR_0321/A18S/1658:1666No text annotation
Not in a motif group
geometric
HL_4V88_220
HL_01181.4
HL_7TOR_0331/A18S/1847:1852No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_58912.1
HL_7TOR_0341/A28S/37:44No text annotation
Not in a motif group
geometric
HL_4WF9_006
HL_23481.5
HL_7TOR_0351/A28S/68:73No text annotation
Not in a motif group
geometric
HL_5TBW_002
HL_96776.3
HL_7TOR_0361/A28S/89:95No text annotation
Not in a motif group
geometric
HL_7RQB_008
HL_67216.5
HL_7TOR_0371/A28S/131:137No text annotation
Not in a motif group
geometric
HL_1WZ2_007
HL_05692.1
HL_7TOR_0381/A28S/204:211T-loop with 1 bulged base
Not in a motif group
geometric
HL_5TBW_005
HL_68493.6
HL_7TOR_0391/A28S/222:226No text annotation
Not in a motif group
geometric
HL_4V9F_011
HL_98557.5
HL_7TOR_0401/A28S/230:238No text annotation
Not in a motif group
geometric
HL_5J7L_144
HL_08002.6
HL_7TOR_0411/A28S/289:298No text annotation
Not in a motif group
geometric
HL_5TBW_008
HL_54035.7
HL_7TOR_0421/A28S/314:323No text annotation
Not in a motif group
geometric
HL_5TBW_009
HL_46142.8
HL_7TOR_0431/A28S/368:373GNRA
Not in a motif group
geometric
HL_5J7L_027
HL_43074.18
HL_7TOR_0441/A28S/393:398GNRA
Not in a motif group
geometric
HL_5F9F_003
HL_43074.18
HL_7TOR_0451/A28S/521:641No text annotation
Not in a motif group
HL_7TOR_0461/A28S/758:905No text annotation
Not in a motif group
geometric
HL_7RQB_011
HL_98557.5
HL_7TOR_0471/A28S/962:970No text annotation
Not in a motif group
geometric
HL_4WF9_011
HL_98557.5
HL_7TOR_0481/A28S/988:1066No text annotation
Not in a motif group
HL_7TOR_0491/A28S/1178:1183No text annotation
Not in a motif group
HL_7TOR_0501/A28S/1317:1326T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5TBW_014
HL_33239.17
HL_7TOR_0511/A28S/1364:1373No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_69459.1
HL_7TOR_0521/A28S/1389:1394GNRA
Not in a motif group
geometric
HL_5TBW_016
HL_43074.18
HL_7TOR_0531/A28S/1436:1448No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_69459.1
HL_7TOR_0541/A28S/1479:1486No text annotation
Not in a motif group
HL_7TOR_0551/A28S/1561:1566GNRA
Not in a motif group
geometric
HL_5J7L_003
HL_43074.18
HL_7TOR_0561/A28S/1593:1602No text annotation
Not in a motif group
geometric
HL_4V9F_024
HL_39334.5
HL_7TOR_0571/A28S/1627:1635No text annotation
Not in a motif group
geometric
HL_5TBW_021
HL_05832.1
HL_7TOR_0581/A28S/1675:1680No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_69459.1
HL_7TOR_0591/A28S/1761:1772No text annotation
Not in a motif group
HL_7TOR_0601/A28S/1816:1823No text annotation
Not in a motif group
HL_7TOR_0611/A28S/1864:1870GNRA
Not in a motif group
geometric
HL_4V9F_028
HL_43074.18
HL_7TOR_0621/A28S/1886:1893No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_58912.1
HL_7TOR_0631/A28S/1973:1993No text annotation
Not in a motif group
HL_7TOR_0641/A28S/2001:2016No text annotation
Not in a motif group
HL_7TOR_0651/A28S/2087:2270No text annotation
Not in a motif group
HL_7TOR_0661/A28S/2317:2322GNRA
Not in a motif group
geometric
HL_5J7L_027
HL_43074.18
HL_7TOR_0671/A28S/2376:2384T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_5TBW_031
HL_33239.17
HL_7TOR_0681/A28S/2420:2426No text annotation
Not in a motif group
geometric
HL_5J7L_170
HL_86880.5
HL_7TOR_0691/A28S/2458:2463No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_98557.5
HL_7TOR_0701/A28S/2487:2491No text annotation
Not in a motif group
HL_7TOR_0711/A28S/2523:2532No text annotation
Not in a motif group
geometric
HL_5TBW_035
HL_78457.4
HL_7TOR_0721/A28S/2561:2566Other HL
Not in a motif group
geometric
HL_6UFH_004
HL_43074.18
HL_7TOR_0731/A28S/2578:2583GNRA
Not in a motif group
geometric
HL_5TBW_036
HL_43074.18
HL_7TOR_0741/A28S/2624:2632No text annotation
Not in a motif group
geometric
HL_5TBW_037
HL_73793.2
HL_7TOR_0751/A28S/2664:2670Other HL
Not in a motif group
geometric
HL_4V9F_039
HL_68493.6
HL_7TOR_0761/A28S/2705:2710No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_58912.1
HL_7TOR_0771/A28S/2738:2742No text annotation
Not in a motif group
geometric
HL_4V9F_041
HL_69353.7
HL_7TOR_0781/A28S/2792:2799No text annotation
Not in a motif group
geometric
HL_5TBW_041
HL_66171.3
HL_7TOR_0791/A28S/2810:2816GNRA with one bulged base
Not in a motif group
geometric
HL_5TBW_042
HL_02361.6
HL_7TOR_0801/A28S/2872:2877UNCG
Not in a motif group
geometric
HL_4PMI_004
HL_79299.11
HL_7TOR_0811/A28S/2900:3599No text annotation
Not in a motif group
HL_7TOR_0821/A28S/3614:3618No text annotation
Not in a motif group
geometric
HL_6FQ3_001
HL_99223.1
HL_7TOR_0831/A28S/3639:3649No text annotation
Not in a motif group
geometric
HL_4WF9_043
HL_43613.4
HL_7TOR_0841/A28S/3668:3674No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_62869.3
HL_7TOR_0851/A28S/3724:3729Other HL
Not in a motif group
geometric
HL_5TBW_048
HL_43074.18
HL_7TOR_0861/A28S/3757:3767No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_98248.1
HL_7TOR_0871/A28S/3796:3804No text annotation
Not in a motif group
geometric
HL_5TBW_050
HL_53760.4
HL_7TOR_0881/A28S/3873:3882No text annotation
Not in a motif group
geometric
HL_5TBW_051
HL_90642.5
HL_7TOR_0891/A28S/3975:4036No text annotation
Not in a motif group
HL_7TOR_0901/A28S/4099:4110No text annotation
Not in a motif group
HL_7TOR_0911/A28S/4193:4201No text annotation
Not in a motif group
geometric
HL_7A0S_052
HL_46891.3
HL_7TOR_0921/A28S/4210:4222No text annotation
Not in a motif group
geometric
HL_4WF9_050
HL_19870.5
HL_7TOR_0931/A28S/4250:4258No text annotation
Not in a motif group
geometric
HL_4V9F_057
HL_76406.3
HL_7TOR_0941/A28S/4270:4277No text annotation
Not in a motif group
geometric
HL_7RQB_056
HL_46142.8
HL_7TOR_0951/A28S/4301:4309No text annotation
Not in a motif group
geometric
HL_5TBW_058
HL_14725.1
HL_7TOR_0961/A28S/4321:4326GNRA
Not in a motif group
geometric
HL_5TBW_059
HL_43074.18
HL_7TOR_0971/A28S/4352:4362No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_18218.2
HL_7TOR_0981/A28S/4417:4425No text annotation
Not in a motif group
geometric
HL_5J7L_193
HL_36421.5
HL_7TOR_0991/A28S/4474:4481No text annotation
Not in a motif group
geometric
HL_5TBW_062
HL_92681.5
HL_7TOR_1001/A28S/4497:4503No text annotation
Not in a motif group
geometric
HL_5TBW_063
HL_26055.6
HL_7TOR_1011/A28S/4540:4545No text annotation
Not in a motif group
geometric
HL_7RQB_063
HL_43074.18
HL_7TOR_1021/A28S/4603:4608No text annotation
Not in a motif group
geometric
HL_7A0S_063
HL_43074.18
HL_7TOR_1031/A28S/4646:4651Ribsomal LSU H95
Not in a motif group
geometric
HL_5J7L_198
HL_67719.1
HL_7TOR_1041/A28S/4688:4702No text annotation
Not in a motif group
geometric
HL_5TBW_067
HL_56677.5
HL_7TOR_1051/A28S/4775:4860No text annotation
Not in a motif group
HL_7TOR_1061/A28S/4906:4915No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_58912.1
HL_7TOR_1071/A28S/4975:4983No text annotation
Not in a motif group
geometric
HL_5J7L_201
HL_05018.6
HL_7TOR_1081/A28S/5020:5029No text annotation
Not in a motif group
HL_7TOR_1091/A58S/47:56No text annotation
Not in a motif group
geometric
HL_7A0S_001
HL_29414.1
HL_7TOR_1101/A58S/68:90No text annotation
Not in a motif group
HL_7TOR_1111/A58S/107:112No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98557.5
HL_7TOR_1121/A58S/121:129No text annotation
Not in a motif group
geometric
HL_5J7L_151
HL_25660.1
HL_7TOR_1131/A5S/36:41No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_02733.5
HL_7TOR_1141/A5S/86:91GNRA
Not in a motif group
homologous
HL_4V9F_072
HL_43074.18
HL_7TOR_1151/ETRN/13:22No text annotation
Not in a motif group
geometric
HL_4V9F_003
HL_94352.4
HL_7TOR_1161/ETRN/31:39No text annotation
Not in a motif group
geometric
HL_4WF9_004
HL_93727.5
HL_7TOR_1171/ETRN/53:61T-loop with 1 bulged base
Not in a motif group
geometric
HL_4V9F_010
HL_68493.6
HL_7TOR_1181/PTRN/13:22No text annotation
Not in a motif group
geometric
HL_4TUE_033
HL_51876.1
HL_7TOR_1191/PTRN/31:39tRNA anticodon loop
Not in a motif group
geometric
HL_4TUE_034
HL_97724.2
HL_7TOR_1201/PTRN/53:61T-loop with 2 stacked bulged bases
Not in a motif group
geometric
HL_4V9Q_215
HL_33239.17

Problematic loops

#loop idProblemSequence
HL_7TOR_006No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7TOR_0011/A18S/23:25,
1/A18S/649:651
No text annotation
Not in a motif group
geometric
IL_4WF9_042
IL_01312.13
IL_7TOR_0021/A18S/34:36,
1/A18S/519:521
No text annotation
Not in a motif group
geometric
IL_6IA2_002
IL_01312.13
IL_7TOR_0031/A18S/37:40,
1/A18S/514:518
Double sheared
Not in a motif group
geometric
IL_4WF9_016
IL_09705.7
IL_7TOR_0041/A18S/41:47,
1/A18S/479:481
No text annotation
Not in a motif group
geometric
IL_4V88_387
IL_34626.4
IL_7TOR_0051/A18S/49:51,
1/A18S/476:477
Minor groove platform
Not in a motif group
geometric
IL_4V88_388
IL_06437.11
IL_7TOR_0061/A18S/57:62,
1/A18S/86:88
No text annotation
Not in a motif group
geometric
IL_4V88_389
IL_96451.1
IL_7TOR_0071/A18S/63:68,
1/A18S/81:85
No text annotation
Not in a motif group
geometric
IL_4V88_390
IL_59423.1
IL_7TOR_0081/A18S/108:110,
1/A18S/351:353
No text annotation
Not in a motif group
geometric
IL_1T0E_002
IL_01312.13
IL_7TOR_0091/A18S/110:115,
1/A18S/348:351
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1MFQ_004
IL_85877.10
IL_7TOR_0101/A18S/116:121,
1/A18S/343:347
No text annotation
Not in a motif group
geometric
IL_4V88_393
IL_76386.1
IL_7TOR_0121/A18S/145:151,
1/A18S/167:174
tWH-tWH-tHW-tHW
Not in a motif group
geometric
IL_4V88_394
IL_92440.5
IL_7TOR_0131/A18S/152:154,
1/A18S/164:166
Isolated cWH basepair
Not in a motif group
geometric
IL_3R1C_032
IL_42589.6
IL_7TOR_0141/A18S/188:192,
1/A18S/207:211
Triple sheared
Not in a motif group
geometric
IL_5J7L_338
IL_56467.6
IL_7TOR_0151/A18S/216:219,
1/A18S/302:309
No text annotation
Not in a motif group
IL_7TOR_0161/A18S/223:288,
1/A18S/295:298
No text annotation
Not in a motif group
IL_7TOR_0171/A18S/312:314,
1/A18S/336:337
Single bulged A
Not in a motif group
geometric
IL_4V88_399
IL_80007.16
IL_7TOR_0181/A18S/317:320,
1/A18S/331:333
Other IL
Not in a motif group
geometric
IL_5TBW_064
IL_87630.5
IL_7TOR_0191/A18S/359:364,
1/A18S/396:403
Kink-turn with non-sequential stacking
Not in a motif group
geometric
IL_5J7L_014
IL_29549.9
IL_7TOR_0201/A18S/366:371,
1/A18S/393:394
No text annotation
Not in a motif group
geometric
IL_5Y58_001
IL_98882.3
IL_7TOR_0211/A18S/411:413,
1/A18S/424:429
No text annotation
Not in a motif group
geometric
IL_4V88_404
IL_46732.1
IL_7TOR_0221/A18S/437:439,
1/A18S/454:456
Isolated cWH basepair
Not in a motif group
geometric
IL_4V88_405
IL_42589.6
IL_7TOR_0231/A18S/459:461,
1/A18S/468:470
Isolated near basepair
Not in a motif group
geometric
IL_3NJ7_004
IL_42589.6
IL_7TOR_0241/A18S/487:489,
1/A18S/511:512
Single bulged U
Not in a motif group
geometric
IL_4LFB_014
IL_83039.11
IL_7TOR_0251/A18S/491:495,
1/A18S/508:509
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_08376.2
IL_7TOR_0261/A18S/495:496,
1/A18S/506:508
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_59137.10
IL_7TOR_0271/A18S/529:530,
1/A18S/554:556
Single bulged A
Not in a motif group
geometric
IL_6WPI_001
IL_80007.16
IL_7TOR_0281/A18S/535:538,
1/A18S/545:549
No text annotation
Not in a motif group
IL_7TOR_0291/A18S/563:565,
1/A18S/585:592
No text annotation
Not in a motif group
IL_7TOR_0301/A18S/566:569,
1/A18S/581:584
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6JDV_001
IL_85877.10
IL_7TOR_0311/A18S/599:608,
1/A18S/635:637
No text annotation
Not in a motif group
IL_7TOR_0321/A18S/611:617,
1/A18S/624:632
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_04667.1
IL_7TOR_0331/A18S/663:665,
1/A18S/1162:1164
No text annotation
Not in a motif group
geometric
IL_1Y27_001
IL_01312.13
IL_7TOR_0341/A18S/665:671,
1/A18S/1161:1162
No text annotation
Not in a motif group
geometric
IL_5J7L_026
IL_19222.1
IL_7TOR_0351/A18S/673:675,
1/A18S/1030:1032
CC cWW
Not in a motif group
geometric
IL_4E59_001
IL_01312.13
IL_7TOR_0361/A18S/676:680,
1/A18S/1025:1029
tSH-tHW-tHS
Not in a motif group
geometric
IL_5J7L_027
IL_39521.5
IL_7TOR_0371/A18S/692:695,
1/A18S/731:734
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5EW4_002
IL_85877.10
IL_7TOR_0381/A18S/745:749,
1/A18S/794:796
Not an internal loop
Not in a motif group
geometric
IL_5VCI_005
IL_04038.4
IL_7TOR_0391/A18S/752:754,
1/A18S/790:791
No text annotation
Not in a motif group
IL_7TOR_0401/A18S/802:803,
1/A18S/860:863
Major groove minor groove platform; mini C-loop
Not in a motif group
geometric
IL_4V88_423
IL_09061.4
IL_7TOR_0411/A18S/805:807,
1/A18S/856:858
No text annotation
Not in a motif group
geometric
IL_4KNQ_003
IL_07262.1
IL_7TOR_0421/A18S/807:816,
1/A18S/848:856
No text annotation
Not in a motif group
IL_7TOR_0431/A18S/874:876,
1/A18S/910:912
No text annotation
Not in a motif group
geometric
IL_4V88_417
IL_01312.13
IL_7TOR_0441/A18S/877:879,
1/A18S/907:909
No text annotation
Not in a motif group
geometric
IL_5TBW_042
IL_01312.13
IL_7TOR_0451/A18S/922:923,
1/A18S/1019:1022
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_6N5P_003
IL_70995.6
IL_7TOR_0461/A18S/924:927,
1/A18S/1014:1018
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_429
IL_85877.10
IL_7TOR_0471/A18S/928:931,
1/A18S/1010:1013
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_430
IL_85877.10
IL_7TOR_0481/A18S/931:935,
1/A18S/1007:1010
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_431
IL_85877.10
IL_7TOR_0491/A18S/942:945,
1/A18S/981:984
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_432
IL_85877.10
IL_7TOR_0501/A18S/952:956,
1/A18S/967:974
Kink-turn
Not in a motif group
geometric
IL_7A0S_004
IL_29549.9
IL_7TOR_0511/A18S/1042:1047,
1/A18S/1071:1073
Other IL
Not in a motif group
geometric
IL_4V88_435
IL_51590.1
IL_7TOR_0521/A18S/1047:1051,
1/A18S/1067:1071
tSH-tHW-tHS
Not in a motif group
geometric
IL_4V88_436
IL_39521.5
IL_7TOR_0531/A18S/1091:1093,
1/A18S/1152:1158
No text annotation
Not in a motif group
geometric
IL_4V88_437
IL_19557.1
IL_7TOR_0541/A18S/1098:1101,
1/A18S/1131:1134
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_438
IL_85877.10
IL_7TOR_0551/A18S/1101:1103,
1/A18S/1129:1131
No text annotation
Not in a motif group
geometric
IL_1YZ9_002
IL_01312.13
IL_7TOR_0561/A18S/1108:1110,
1/A18S/1123:1124
Minor groove platform
Not in a motif group
geometric
IL_4V88_412
IL_06437.11
IL_7TOR_0571/A18S/1168:1175,
1/A18S/1186:1191
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
geometric
IL_4LFB_034
IL_24606.1
IL_7TOR_0581/A18S/1203:1204,
1/A18S/1694:1696
Single bulged A
Not in a motif group
geometric
IL_5J7L_039
IL_80007.16
IL_7TOR_0591/A18S/1206:1208,
1/A18S/1691:1692
Single bulged G
Not in a motif group
geometric
IL_6CZR_148
IL_59137.10
IL_7TOR_0601/A18S/1214:1217,
1/A18S/1681:1685
C-loop
Not in a motif group
geometric
IL_4V88_443
IL_63596.4
IL_7TOR_0611/A18S/1230:1232,
1/A18S/1526:1528
No text annotation
Not in a motif group
geometric
IL_4V88_444
IL_01312.13
IL_7TOR_0621/A18S/1235:1236,
1/A18S/1521:1523
Minor groove platform
Not in a motif group
geometric
IL_4V88_445
IL_06437.11
IL_7TOR_0631/A18S/1270:1272,
1/A18S/1510:1512
No text annotation
Not in a motif group
geometric
IL_4E48_005
IL_01312.13
IL_7TOR_0641/A18S/1280:1287,
1/A18S/1314:1317
No text annotation
Not in a motif group
IL_7TOR_0651/A18S/1287:1290,
1/A18S/1309:1314
No text annotation
Not in a motif group
IL_7TOR_0661/A18S/1291:1294,
1/A18S/1305:1308
No text annotation
Not in a motif group
IL_7TOR_0671/A18S/1325:1327,
1/A18S/1502:1503
Single bulged U
Not in a motif group
geometric
IL_4V88_449
IL_83039.11
IL_7TOR_0681/A18S/1328:1333,
1/A18S/1498:1501
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_473
IL_85877.10
IL_7TOR_0691/A18S/1333:1335,
1/A18S/1492:1498
Minor groove platform with extra cWW
Not in a motif group
geometric
IL_4V88_451
IL_09768.1
IL_7TOR_0701/A18S/1337:1338,
1/A18S/1488:1490
Single bulged A
Not in a motif group
geometric
IL_4V88_452
IL_80007.16
IL_7TOR_0711/A18S/1347:1349,
1/A18S/1380:1382
No text annotation
Not in a motif group
geometric
IL_7A0S_042
IL_01312.13
IL_7TOR_0721/A18S/1363:1365,
1/A18S/1374:1375
Minor groove platform
Not in a motif group
geometric
IL_5TBW_039
IL_06437.11
IL_7TOR_0731/A18S/1395:1399,
1/A18S/1447:1450
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5EW4_002
IL_85877.10
IL_7TOR_0741/A18S/1402:1405,
1/A18S/1441:1444
Minor groove platform
Not in a motif group
geometric
IL_4V88_456
IL_69507.1
IL_7TOR_0751/A18S/1412:1413,
1/A18S/1427:1429
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_59137.10
IL_7TOR_0761/A18S/1537:1539,
1/A18S/1594:1596
No text annotation
Not in a motif group
geometric
IL_4E48_005
IL_01312.13
IL_7TOR_0771/A18S/1550:1558,
1/A18S/1577:1582
No text annotation
Not in a motif group
geometric
IL_5J7L_055
IL_75461.2
IL_7TOR_0781/A18S/1560:1562,
1/A18S/1573:1575
No text annotation
Not in a motif group
geometric
IL_5AOX_001
IL_01312.13
IL_7TOR_0791/A18S/1604:1610,
1/A18S/1629:1635
No text annotation
Not in a motif group
IL_7TOR_0801/A18S/1700:1702,
1/A18S/1833:1836
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.2
IL_7TOR_0811/A18S/1702:1705,
1/A18S/1829:1833
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_59281.1
IL_7TOR_0821/A18S/1706:1708,
1/A18S/1826:1828
No text annotation
Not in a motif group
geometric
IL_5VCI_002
IL_01312.13
IL_7TOR_0831/A18S/1708:1711,
1/A18S/1822:1826
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1JID_002
IL_85877.10
IL_7TOR_0841/A18S/1714:1716,
1/A18S/1817:1819
No text annotation
Not in a motif group
geometric
IL_4V88_419
IL_01312.13
IL_7TOR_0851/A18S/1717:1720,
1/A18S/1813:1816
Double sheared
Not in a motif group
geometric
IL_4V88_468
IL_09705.7
IL_7TOR_0861/A18S/1720:1723,
1/A18S/1811:1813
Isolated cWS basepair
Not in a motif group
geometric
IL_4TS2_003
IL_67621.5
IL_7TOR_0871/A18S/1729:1731,
1/A18S/1803:1805
No text annotation
Not in a motif group
geometric
IL_5TBW_016
IL_01312.13
IL_7TOR_0881/A18S/1733:1736,
1/A18S/1798:1801
Double sheared
Not in a motif group
geometric
IL_4V88_471
IL_09705.7
IL_7TOR_0891/A18S/1739:1741,
1/A18S/1793:1795
No text annotation
Not in a motif group
geometric
IL_3SZX_002
IL_01312.13
IL_7TOR_0901/A18S/1742:1746,
1/A18S/1788:1792
Triple sheared
Not in a motif group
geometric
IL_7RQB_075
IL_56467.6
IL_7TOR_0911/A18S/1750:1751,
1/A18S/1782:1784
No text annotation
Not in a motif group
IL_7TOR_0921/A18S/1751:1753,
1/A18S/1779:1782
No text annotation
Not in a motif group
IL_7TOR_0931/A28S/6:7,
1/A58S/149:151
Single bulged C
Not in a motif group
geometric
IL_6ZDP_001
IL_61258.10
IL_7TOR_0941/A28S/11:14,
1/A58S/143:145
UG cWW
Not in a motif group
geometric
IL_4LFB_061
IL_01312.13
IL_7TOR_0951/A28S/16:18,
1/A58S/139:141
No text annotation
Not in a motif group
geometric
IL_1Y27_001
IL_01312.13
IL_7TOR_0961/A28S/26:27,
1/A28S/55:57
Single stack bend
Not in a motif group
geometric
IL_7A0S_005
IL_04038.4
IL_7TOR_0971/A28S/30:37,
1/A28S/44:52
9x8 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4WF9_008
IL_61812.1
IL_7TOR_0981/A28S/81:88,
1/A28S/96:102
No text annotation
Not in a motif group
geometric
IL_5TBW_006
IL_29509.1
IL_7TOR_0991/A28S/118:121,
1/A28S/152:153
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
geometric
IL_1U9S_003
IL_13730.12
IL_7TOR_1001/A28S/121:122,
1/A28S/147:152
No text annotation
Not in a motif group
geometric
IL_5TBW_007
IL_19724.1
IL_7TOR_1011/A28S/125:126,
1/A28S/142:144
Single bulged C
Not in a motif group
geometric
IL_1DQF_001
IL_61258.10
IL_7TOR_1021/A28S/168:173,
1/A28S/263:267
No text annotation
Not in a motif group
IL_7TOR_1031/A28S/180:189,
1/A28S/252:256
No text annotation
Not in a motif group
IL_7TOR_1041/A28S/195:196,
1/A28S/244:246
Single bulged C
Not in a motif group
geometric
IL_1S03_006
IL_61258.10
IL_7TOR_1051/A28S/199:201,
1/A28S/214:215
Single bulged U
Not in a motif group
geometric
IL_4V9F_013
IL_83039.11
IL_7TOR_1061/A28S/339:342,
1/A58S/32:33
Minor groove platform
Not in a motif group
geometric
IL_7RQB_073
IL_06437.11
IL_7TOR_1071/A28S/348:350,
1/A58S/25:26
Single bulged A
Not in a motif group
geometric
IL_5TBW_013
IL_80007.16
IL_7TOR_1081/A28S/387:390,
1/A28S/401:414
No text annotation
Not in a motif group
geometric
IL_5TBW_014
IL_60992.5
IL_7TOR_1091/A28S/415:421,
1/A58S/13:19
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_5TBW_015
IL_66414.5
IL_7TOR_1101/A28S/443:446,
1/A28S/1300:1304
No text annotation
Not in a motif group
geometric
IL_6AZ4_001
IL_01759.1
IL_7TOR_1111/A28S/448:450,
1/A28S/1297:1298
No text annotation
Not in a motif group
IL_7TOR_1121/A28S/459:460,
1/A28S/695:697
No text annotation
Not in a motif group
IL_7TOR_1131/A28S/461:464,
1/A28S/691:694
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4WF9_109
IL_85877.10
IL_7TOR_1141/A28S/466:472,
1/A28S/682:689
No text annotation
Not in a motif group
IL_7TOR_1151/A28S/481:482,
1/A28S/672:673
Single bulged C
Not in a motif group
geometric
IL_4WF9_035
IL_61258.10
IL_7TOR_1161/A28S/482:485,
1/A28S/671:672
Multiple bulged bases
Not in a motif group
geometric
IL_6JXM_001
IL_13730.12
IL_7TOR_1171/A28S/487:488,
1/A28S/665:669
Multiple bulged bases
Not in a motif group
geometric
IL_1R3E_002
IL_13730.12
IL_7TOR_1181/A28S/491:493,
1/A28S/661:662
Single bulged U
Not in a motif group
geometric
IL_4WF9_030
IL_83039.11
IL_7TOR_1191/A28S/497:499,
1/A28S/656:657
Single bulged C
Not in a motif group
geometric
IL_3SNP_003
IL_61258.10
IL_7TOR_1201/A28S/508:510,
1/A28S/649:650
Single bulged A
Not in a motif group
geometric
IL_4V88_409
IL_80007.16
IL_7TOR_1211/A28S/511:515,
1/A28S/646:648
No text annotation
Not in a motif group
IL_7TOR_1221/A28S/519:521,
1/A28S/641:642
Single stack bend
Not in a motif group
geometric
IL_5TBW_375
IL_04038.4
IL_7TOR_1231/A28S/709:710,
1/A28S/1286:1288
Single bulged G
Not in a motif group
geometric
IL_4LFB_036
IL_59137.10
IL_7TOR_1241/A28S/723:724,
1/A28S/942:945
Multiple bulged bases
Not in a motif group
geometric
IL_7V9E_001
IL_13730.12
IL_7TOR_1251/A28S/727:731,
1/A28S/938:939
No text annotation
Not in a motif group
IL_7TOR_1261/A28S/732:735,
1/A28S/928:937
No text annotation
Not in a motif group
IL_7TOR_1271/A28S/737:739,
1/A28S/923:926
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_44093.1
IL_7TOR_1281/A28S/745:753,
1/A28S/910:919
No text annotation
Not in a motif group
IL_7TOR_1291/A28S/1077:1081,
1/A28S/1218:1234
No text annotation
Not in a motif group
IL_7TOR_1301/A28S/1082:1084,
1/A28S/1213:1217
Isolated near basepair
Not in a motif group
geometric
IL_7A0S_030
IL_42589.6
IL_7TOR_1311/A28S/1086:1087,
1/A28S/1209:1211
Single bulged C
Not in a motif group
geometric
IL_3W3S_001
IL_61258.10
IL_7TOR_1321/A28S/1097:1098,
1/A28S/1197:1199
Single stack bend
Not in a motif group
geometric
IL_5J7L_249
IL_04038.4
IL_7TOR_1331/A28S/1099:1168,
1/A28S/1193:1196
No text annotation
Not in a motif group
IL_7TOR_1341/A28S/1173:1175,
1/A28S/1186:1188
Isolated cWH basepair
Not in a motif group
geometric
IL_3W3S_003
IL_42589.6
IL_7TOR_1351/A28S/1357:1360,
1/A28S/1379:1382
No text annotation
Not in a motif group
IL_7TOR_1361/A28S/1360:1361,
1/A28S/1376:1379
Multiple bulged bases
Not in a motif group
geometric
IL_7V9E_001
IL_13730.12
IL_7TOR_1371/A28S/1425:1429,
1/A28S/1455:1460
Triple sheared related
Not in a motif group
geometric
IL_4V9F_018
IL_64879.1
IL_7TOR_1381/A28S/1431:1434,
1/A28S/1450:1453
Double sheared
Not in a motif group
geometric
IL_4LFB_060
IL_09705.7
IL_7TOR_1391/A28S/1467:1468,
1/A28S/1496:1498
Single bulged A
Not in a motif group
geometric
IL_5TBW_024
IL_80007.16
IL_7TOR_1401/A28S/1474:1476,
1/A28S/1489:1490
Single stack bend
Not in a motif group
geometric
IL_5J7L_249
IL_04038.4
IL_7TOR_1411/A28S/1520:1522,
1/A28S/1655:1657
No text annotation
Not in a motif group
geometric
IL_5TBW_027
IL_01312.13
IL_7TOR_1421/A28S/1522:1526,
1/A28S/1648:1655
No text annotation
Not in a motif group
geometric
IL_5TBW_028
IL_17470.5
IL_7TOR_1431/A28S/1550:1551,
1/A28S/1576:1578
Single bulged G
Not in a motif group
geometric
IL_4LVW_002
IL_59137.10
IL_7TOR_1441/A28S/1551:1555,
1/A28S/1572:1576
Triple sheared
Not in a motif group
geometric
IL_5J7L_263
IL_56467.6
IL_7TOR_1451/A28S/1586:1589,
1/A28S/1605:1607
Major groove platform with extra cWW
Not in a motif group
geometric
IL_5TBW_031
IL_95485.6
IL_7TOR_1461/A28S/1590:1592,
1/A28S/1603:1604
Single bulged U
Not in a motif group
geometric
IL_5TBW_032
IL_83039.11
IL_7TOR_1471/A28S/1624:1626,
1/A28S/1636:1640
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_033
IL_90991.5
IL_7TOR_1481/A28S/1671:1673,
1/A28S/1682:1684
No text annotation
Not in a motif group
geometric
IL_5TBW_034
IL_01312.13
IL_7TOR_1491/A28S/1686:1688,
1/A28S/1848:1851
No text annotation
Not in a motif group
IL_7TOR_1501/A28S/1694:1721,
1/A28S/1841:1842
No text annotation
Not in a motif group
IL_7TOR_1511/A28S/1723:1725,
1/A28S/1838:1839
Single bulged G
Not in a motif group
geometric
IL_5TBW_037
IL_59137.10
IL_7TOR_1521/A28S/1732:1737,
1/A28S/1792:1797
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7A0S_027
IL_89193.1
IL_7TOR_1531/A28S/1737:1738,
1/A28S/1790:1792
Minor groove platform
Not in a motif group
geometric
IL_6DLR_003
IL_06437.11
IL_7TOR_1541/A28S/1739:1744,
1/A28S/1786:1789
C-loop
Not in a motif group
geometric
IL_5TBW_040
IL_63596.4
IL_7TOR_1551/A28S/1746:1749,
1/A28S/1781:1784
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_041
IL_85877.10
IL_7TOR_1561/A28S/1749:1751,
1/A28S/1779:1781
No text annotation
Not in a motif group
geometric
IL_5TBW_042
IL_01312.13
IL_7TOR_1571/A28S/1753:1756,
1/A28S/1776:1777
Multiple bulged bases
Not in a motif group
geometric
IL_4YAZ_007
IL_66450.1
IL_7TOR_1581/A28S/1758:1761,
1/A28S/1772:1774
No text annotation
Not in a motif group
IL_7TOR_1591/A28S/1814:1816,
1/A28S/1823:1824
Single bulged G
Not in a motif group
geometric
IL_4V88_442
IL_59137.10
IL_7TOR_1601/A28S/1858:1860,
1/A28S/1874:1876
No text annotation
Not in a motif group
geometric
IL_5TBW_046
IL_01312.13
IL_7TOR_1611/A28S/1905:1909,
1/A28S/2067:2071
UAA/GAN
Not in a motif group
geometric
IL_5TBW_048
IL_53523.5
IL_7TOR_1621/A28S/1911:1918,
1/A28S/2064:2065
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_7RQB_037
IL_15861.6
IL_7TOR_1631/A28S/1918:1920,
1/A28S/2063:2064
No text annotation
Not in a motif group
IL_7TOR_1641/A28S/1920:1922,
1/A28S/2062:2063
No text annotation
Not in a motif group
IL_7TOR_1651/A28S/1926:1933,
1/A28S/2053:2058
No text annotation
Not in a motif group
geometric
IL_5TBW_051
IL_17971.1
IL_7TOR_1661/A28S/1933:1944,
1/A28S/2038:2053
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_94878.1
IL_7TOR_1671/A28S/1946:1948,
1/A28S/2035:2036
Single bulged U
Not in a motif group
geometric
IL_5TBW_053
IL_83039.11
IL_7TOR_1681/A28S/1957:1965,
1/A28S/2022:2026
Kink-turn
Not in a motif group
geometric
IL_5D8H_001
IL_90538.3
IL_7TOR_1691/A28S/2083:2085,
1/A28S/2272:2273
Single bulged U
Not in a motif group
geometric
IL_6CZR_156
IL_83039.11
IL_7TOR_1701/A28S/2290:2292,
1/A28S/2342:2345
Isolated cWS basepair
Not in a motif group
geometric
IL_5TBW_057
IL_01312.13
IL_7TOR_1711/A28S/2299:2301,
1/A28S/2334:2335
Single bulged A
Not in a motif group
geometric
IL_3OXE_001
IL_80007.16
IL_7TOR_1721/A28S/2302:2309,
1/A28S/2329:2333
Kink-turn
Not in a motif group
geometric
IL_4V9F_048
IL_29549.9
IL_7TOR_1731/A28S/2312:2314,
1/A28S/2325:2326
Single bulged A
Not in a motif group
geometric
IL_5J7L_302
IL_80007.16
IL_7TOR_1741/A28S/2358:2364,
1/A28S/3858:3863
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5TBW_061
IL_35110.5
IL_7TOR_1751/A28S/2415:2419,
1/A28S/2427:2429
C-loop
Not in a motif group
geometric
IL_7A0S_047
IL_63596.4
IL_7TOR_1761/A28S/2446:2450,
1/A28S/2509:2514
UAA/GAN
Not in a motif group
geometric
IL_5TBW_063
IL_53523.5
IL_7TOR_1771/A28S/2454:2456,
1/A28S/2465:2471
No text annotation
Not in a motif group
IL_7TOR_1781/A28S/2477:2479,
1/A28S/2499:2500
Single stack bend
Not in a motif group
geometric
IL_4WF9_007
IL_04038.4
IL_7TOR_1791/A28S/2542:2547,
1/A28S/2772:2774
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_4RUM_001
IL_01312.13
IL_7TOR_1801/A28S/2549:2550,
1/A28S/2768:2770
Single bulged U
Not in a motif group
geometric
IL_2A64_002
IL_83039.11
IL_7TOR_1811/A28S/2589:2593,
1/A28S/2752:2756
Triple sheared
Not in a motif group
geometric
IL_7RQB_075
IL_56467.6
IL_7TOR_1821/A28S/2613:2614,
1/A28S/2724:2726
Single bulged A
Not in a motif group
geometric
IL_3MJA_001
IL_80007.16
IL_7TOR_1831/A28S/2614:2615,
1/A28S/2722:2724
Single stack bend
Not in a motif group
geometric
IL_5TBW_070
IL_72766.2
IL_7TOR_1841/A28S/2646:2648,
1/A28S/2685:2688
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_4V9F_076
IL_38958.6
IL_7TOR_1851/A28S/2651:2653,
1/A28S/2681:2682
No text annotation
Not in a motif group
IL_7TOR_1861/A28S/2656:2662,
1/A28S/2672:2678
Kink-turn
Not in a motif group
geometric
IL_5TBW_073
IL_76900.1
IL_7TOR_1871/A28S/2704:2705,
1/A28S/2710:2712
No text annotation
Not in a motif group
IL_7TOR_1881/A28S/2832:2838,
1/A28S/3850:3853
No text annotation
Not in a motif group
geometric
IL_5TBW_074
IL_79393.8
IL_7TOR_1891/A28S/2844:2846,
1/A28S/3842:3844
Isolated tWW turn
Not in a motif group
geometric
IL_4V9F_060
IL_54997.5
IL_7TOR_1901/A28S/2847:2850,
1/A28S/3840:3841
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_5TBW_076
IL_80663.10
IL_7TOR_1911/A28S/2850:2855,
1/A28S/3837:3840
Intercalated tWH
Not in a motif group
geometric
IL_5TBW_077
IL_98882.3
IL_7TOR_1921/A28S/2867:2872,
1/A28S/2877:2883
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_4V9F_063
IL_66584.5
IL_7TOR_1931/A28S/2889:2891,
1/A28S/3610:3612
No text annotation
Not in a motif group
geometric
IL_6OL3_002
IL_01312.13
IL_7TOR_1941/A28S/2896:2897,
1/A28S/3602:3605
No text annotation
Not in a motif group
geometric
IL_5TBW_080
IL_76195.1
IL_7TOR_1951/A28S/3632:3633,
1/A28S/3827:3829
Single bulged A
Not in a motif group
geometric
IL_4V9F_064
IL_80007.16
IL_7TOR_1961/A28S/3660:3665,
1/A28S/3677:3684
Kink-turn related
Not in a motif group
geometric
IL_5TBW_083
IL_95993.1
IL_7TOR_1971/A28S/3700:3703,
1/A28S/3749:3750
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
geometric
IL_5TBW_084
IL_72766.2
IL_7TOR_1981/A28S/3704:3705,
1/A28S/3745:3748
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
geometric
IL_5TBW_085
IL_13730.12
IL_7TOR_1991/A28S/3708:3714,
1/A28S/3739:3742
No text annotation
Not in a motif group
IL_7TOR_2001/A28S/3715:3721,
1/A28S/3732:3738
No text annotation
Not in a motif group
geometric
IL_5TBW_088
IL_36973.5
IL_7TOR_2011/A28S/3780:3781,
1/A28S/3811:3814
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_089
IL_69632.1
IL_7TOR_2021/A28S/3781:3792,
1/A28S/3808:3811
No text annotation
Not in a motif group
geometric
IL_5TBW_090
IL_45481.1
IL_7TOR_2031/A28S/3895:3898,
1/A28S/4563:4565
Major groove platform with extra pair
Not in a motif group
geometric
IL_5TBW_091
IL_87630.5
IL_7TOR_2041/A28S/3900:3902,
1/A28S/4558:4561
Minor groove platform with intercalation
Not in a motif group
geometric
IL_5TBW_092
IL_86964.1
IL_7TOR_2051/A28S/3913:3915,
1/A28S/4388:4389
Single bulged U
Not in a motif group
geometric
IL_5TBW_093
IL_83039.11
IL_7TOR_2061/A28S/3916:3917,
1/A28S/4384:4387
Minor groove platform
Not in a motif group
geometric
IL_5TBW_094
IL_06437.11