6BOH Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/A/12:22 | NA | NA | ||
| 1/A/80:89 | NA | NA | ||
| 1/A/158:163 | NA | NA | ||
| 1/A/186G:191A | NA | NA | ||
| 1/A/200:217 | NA | NA | ||
| 1/A/259:267 | NA | NA | ||
| 1/A/296:301 | NA | NA | ||
| 1/A/320:333 | NA | NA | ||
| 1/A/342:347 | NA | NA | ||
| 1/A/379:384 | NA | NA | ||
| 1/A/419:424 | NA | NA | ||
| 1/A/458:474 | NA | NA | ||
| 1/A/521:528 | NA | NA | ||
| 1/A/617:623 | NA | NA | ||
| 1/A/689:698 | NA | NA | ||
| 1/A/726:731 | NA | NA | ||
| 1/A/786:796 | NA | NA | ||
| 1/A/838:848 | NA | NA | ||
| 1/A/862:867 | NA | NA | ||
| 1/A/897:902 | NA | NA | ||
| 1/A/963:972 | NA | NA | ||
| 1/A/993:1045 | NA | NA | ||
| 1/A/1076:1081 | NA | NA | ||
| 1/A/1089:1096 | NA | NA | ||
| 1/A/1132:1142 | NA | NA | ||
| 1/A/1165:1171 | NA | NA | ||
| 1/A/1265:1270 | NA | NA | ||
| 1/A/1313:1324 | NA | NA | ||
| 1/A/1356:1366 | NA | NA | ||
| 1/A/1449:1454 | NA | NA | ||
| 1/A/1515:1520 | NA | NA | ||
| 1/B/59:68 | homologous HL_7RQB_001 | NA HL_29414.1* | ||
| 1/B/87:95 | homologous HL_7RQB_002 | NA HL_17926.5* | ||
| 1/B/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
| 1/B/137B:141B | homologous HL_7RQB_004 | NA HL_86069.1* | ||
| 1/B/154:172 | NA | NA | ||
| 1/B/194:201 | geometric HL_4WF9_006 | NA HL_23481.5* | ||
| 1/B/225:230 | homologous HL_7RQB_007 | NA HL_06569.2* | ||
| 1/B/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/B/270K:270Q | NA | NA | ||
| 1/B/305:312 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
| 1/B/319:323 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
| 1/B/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/B/382:392 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
| 1/B/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/B/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/B/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/B/544:549 | GNRA geometric HL_4V88_211 | NA HL_43074.18* | ||
| 1/B/566:575 | geometric HL_7RQB_018 | NA HL_33239.17* | ||
| 1/B/611:617 | homologous HL_7RQB_019 | NA HL_49196.4* | ||
| 1/B/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/B/641:647 | homologous HL_7RQB_021 | NA HL_02361.6* | ||
| 1/B/712:719 | homologous HL_7RQB_022 | NA HL_93727.5* | ||
| 1/B/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
| 1/B/779:785 | homologous HL_7RQB_024 | NA HL_16898.3* | ||
| 1/B/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
| 1/B/880:897 | NA | NA | ||
| 1/B/955:962 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
| 1/B/978:985 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
| 1/B/1053:1056 | NA | NA | ||
| 1/B/1092:1099 | NA | NA | ||
| 1/B/1170:1179 | NA | NA | ||
| 1/B/1222:1227 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
| 1/B/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/B/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
| 1/B/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/B/1389:1398 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
| 1/B/1451:1459 | homologous HL_7RQB_037 | NA HL_71540.1* | ||
| 1/B/1492:1498 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
| 1/B/1533:1538 | NA | NA | ||
| 1/B/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
| 1/B/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
| 1/B/1630B:1635 | homologous HL_7RQB_041 | NA HL_86880.5* | ||
| 1/B/1691:1696 | homologous HL_7RQB_042 | NA HL_79299.11* | ||
| 1/B/1727:1733 | homologous HL_7RQB_043 | NA HL_49638.1* | ||
| 1/B/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/B/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
| 1/B/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
| 1/B/1864:1878 | homologous HL_7RQB_047 | NA HL_43074.18* | ||
| 1/B/1909:1921 | homologous HL_7RQB_048 | NA | ||
| 1/B/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
| 1/B/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
| 1/B/2123:2175 | NA | NA | ||
| 1/B/2209:2215 | homologous HL_7RQB_052 | NA HL_82131.1* | ||
| 1/B/2248:2256 | homologous HL_7RQB_053 | NA | ||
| 1/B/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
| 1/B/2302:2314 | NA | NA | ||
| 1/B/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
| 1/B/2355:2362 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
| 1/B/2374:2379 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
| 1/B/2404:2413 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
| 1/B/2471:2479 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
| 1/B/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
| 1/B/2551:2557 | homologous HL_7RQB_062 | NA | ||
| 1/B/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
| 1/B/2658:2663 | GNRA geometric HL_5J7L_197 | NA HL_43074.18* | ||
| 1/B/2701:2706 | homologous HL_7RQB_065 | NA HL_31583.1* | ||
| 1/B/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/B/2793:2803 | NA | NA | ||
| 1/B/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/B/2855:2862 | geometric HL_7A0S_056 | NA HL_93727.5* | ||
| 1/C/38:44 | NA | NA | ||
| 1/C/86:90 | NA | NA | ||
| 1/D/13:22 | NA | NA | ||
| 1/D/31:39 | NA | NA | ||
| 1/D/53:61 | NA | NA | ||
| 1/FB/12:22 | NA | NA | ||
| 1/FB/80:89 | NA | NA | ||
| 1/FB/158:163 | NA | NA | ||
| 1/FB/186G:191A | NA | NA | ||
| 1/FB/200:217 | NA | NA | ||
| 1/FB/259:267 | NA | NA | ||
| 1/FB/296:301 | NA | NA | ||
| 1/FB/320:333 | NA | NA | ||
| 1/FB/342:347 | NA | NA | ||
| 1/FB/379:384 | NA | NA | ||
| 1/FB/419:424 | NA | NA | ||
| 1/FB/458:474 | NA | NA | ||
| 1/FB/521:528 | NA | NA | ||
| 1/FB/617:623 | NA | NA | ||
| 1/FB/689:698 | NA | NA | ||
| 1/FB/726:731 | NA | NA | ||
| 1/FB/786:796 | NA | NA | ||
| 1/FB/838:848 | NA | NA | ||
| 1/FB/862:867 | NA | NA | ||
| 1/FB/897:902 | NA | NA | ||
| 1/FB/963:972 | NA | NA | ||
| 1/FB/993:1045 | NA | NA | ||
| 1/FB/1076:1081 | NA | NA | ||
| 1/FB/1089:1096 | NA | NA | ||
| 1/FB/1132:1142 | NA | NA | ||
| 1/FB/1165:1171 | NA | NA | ||
| 1/FB/1265:1270 | NA | NA | ||
| 1/FB/1313:1324 | NA | NA | ||
| 1/FB/1356:1366 | NA | NA | ||
| 1/FB/1449:1454 | NA | NA | ||
| 1/FB/1515:1520 | NA | NA | ||
| 1/GB/59:68 | homologous HL_7RQB_001 | NA HL_29414.1* | ||
| 1/GB/87:95 | homologous HL_7RQB_002 | NA HL_17926.5* | ||
| 1/GB/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
| 1/GB/137B:141B | homologous HL_7RQB_004 | NA HL_86069.1* | ||
| 1/GB/154:172 | NA | NA | ||
| 1/GB/194:201 | geometric HL_4WF9_006 | NA HL_23481.5* | ||
| 1/GB/225:230 | homologous HL_7RQB_007 | NA HL_06569.2* | ||
| 1/GB/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
| 1/GB/270K:270Q | geometric HL_5J7L_018 | NA HL_93229.1* | ||
| 1/GB/305:312 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
| 1/GB/319:323 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
| 1/GB/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
| 1/GB/382:392 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
| 1/GB/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
| 1/GB/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
| 1/GB/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
| 1/GB/544:549 | GNRA geometric HL_4V88_211 | NA HL_43074.18* | ||
| 1/GB/566:575 | geometric HL_7RQB_018 | NA HL_33239.17* | ||
| 1/GB/611:617 | homologous HL_7RQB_019 | NA HL_49196.4* | ||
| 1/GB/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
| 1/GB/641:647 | homologous HL_7RQB_021 | NA HL_02361.6* | ||
| 1/GB/712:719 | homologous HL_7RQB_022 | NA HL_93727.5* | ||
| 1/GB/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
| 1/GB/779:785 | homologous HL_7RQB_024 | NA HL_16898.3* | ||
| 1/GB/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
| 1/GB/880:897 | NA | NA | ||
| 1/GB/955:962 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
| 1/GB/978:985 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
| 1/GB/1053:1056 | NA | NA | ||
| 1/GB/1092:1099 | NA | NA | ||
| 1/GB/1170:1179 | NA | NA | ||
| 1/GB/1222:1227 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
| 1/GB/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
| 1/GB/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
| 1/GB/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
| 1/GB/1389:1398 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
| 1/GB/1451:1459 | homologous HL_7RQB_037 | NA HL_71540.1* | ||
| 1/GB/1492:1498 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
| 1/GB/1533:1538 | NA | NA | ||
| 1/GB/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
| 1/GB/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
| 1/GB/1630:1636 | geometric HL_7A0S_041 | NA HL_60140.1* | ||
| 1/GB/1691:1696 | homologous HL_7RQB_042 | NA HL_79299.11* | ||
| 1/GB/1727:1733 | homologous HL_7RQB_043 | NA HL_49638.1* | ||
| 1/GB/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
| 1/GB/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
| 1/GB/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
| 1/GB/1864:1878 | homologous HL_7RQB_047 | NA HL_43074.18* | ||
| 1/GB/1909:1921 | homologous HL_7RQB_048 | NA | ||
| 1/GB/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
| 1/GB/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
| 1/GB/2123:2175 | NA | NA | ||
| 1/GB/2209:2215 | homologous HL_7RQB_052 | NA HL_82131.1* | ||
| 1/GB/2248:2256 | homologous HL_7RQB_053 | NA | ||
| 1/GB/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
| 1/GB/2302:2314 | NA | NA | ||
| 1/GB/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
| 1/GB/2355:2362 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
| 1/GB/2374:2379 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
| 1/GB/2404:2413 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
| 1/GB/2471:2479 | homologous HL_7RQB_060 | NA HL_36421.5* | ||
| 1/GB/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
| 1/GB/2551:2557 | homologous HL_7RQB_062 | NA | ||
| 1/GB/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
| 1/GB/2658:2663 | GNRA geometric HL_5J7L_197 | NA HL_43074.18* | ||
| 1/GB/2701:2706 | homologous HL_7RQB_065 | NA HL_31583.1* | ||
| 1/GB/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
| 1/GB/2793:2803 | NA | NA | ||
| 1/GB/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
| 1/GB/2855:2862 | geometric HL_7A0S_056 | NA HL_93727.5* | ||
| 1/HB/38:44 | geometric HL_5TBW_006 | NA HL_98557.5* | ||
| 1/HB/86:90 | GNRA homologous HL_5TBW_186 | NA HL_43074.18* | ||
| 1/IA/13:22 | NA | NA | ||
| 1/IA/31:39 | NA | NA | ||
| 1/IA/50:64 | NA | NA | ||
| 1/IB/13:22 | NA | NA | ||
| 1/IB/31:39 | NA | NA | ||
| 1/IB/53:61 | NA | NA | ||
| 1/NC/13:22 | NA | NA | ||
| 1/NC/31:39 | NA | NA | ||
| 1/NC/50:64 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation (mapped to, source) | motif group (similar to) |
|---|---|---|---|---|
| 1/A/30:32, 1/A/552:553 | NA | NA | ||
| 1/A/44:45, 1/A/396:398 | NA | NA | ||
| 1/A/47:52, 1/A/359:361 | NA | NA | ||
| 1/A/53:57, 1/A/355:358 | NA | NA | ||
| 1/A/63:66, 1/A/103:104 | NA | NA | ||
| 1/A/67:69, 1/A/99:102 | NA | NA | ||
| 1/A/129A:131, 1/A/231:232 | NA | NA | ||
| 1/A/132:136, 1/A/227:230 | NA | NA | ||
| 1/A/148:153, 1/A/168:174 | NA | NA | ||
| 1/A/186A:186C, 1/A/191E:191G | NA | NA | ||
| 1/A/242:247, 1/A/277:284 | NA | NA | ||
| 1/A/248:252, 1/A/274:276 | NA | NA | ||
| 1/A/292:293, 1/A/304:308 | NA | NA | ||
| 1/A/367:369, 1/A/392:393 | NA | NA | ||
| 1/A/371:375, 1/A/389:390 | NA | NA | ||
| 1/A/375:376, 1/A/387:389 | NA | NA | ||
| 1/A/409:416, 1/A/427:433 | NA | NA | ||
| 1/A/446:450, 1/A/483:488 | NA | NA | ||
| 1/A/450:455, 1/A/477:483 | NA | NA | ||
| 1/A/504:511, 1/A/540:541 | NA | NA | ||
| 1/A/515:521, 1/A/528:536 | NA | NA | ||
| 1/A/569:575, 1/A/880:881 | NA | NA | ||
| 1/A/580:584, 1/A/757:761 | NA | NA | ||
| 1/A/594:596, 1/A/644:645 | NA | NA | ||
| 1/A/597:598, 1/A/640:643 | NA | NA | ||
| 1/A/604:612, 1/A/628:634 | NA | NA | ||
| 1/A/654:655, 1/A/751:754 | NA | NA | ||
| 1/A/657:658, 1/A/747:749 | NA | NA | ||
| 1/A/662:666, 1/A/740:743 | NA | NA | ||
| 1/A/673:678, 1/A/712:717 | NA | NA | ||
| 1/A/683:688, 1/A/699:707 | NA | NA | ||
| 1/A/773:778, 1/A/804:806 | NA | NA | ||
| 1/A/779:783, 1/A/799:803 | NA | NA | ||
| 1/A/887:894, 1/A/905:910 | NA | NA | ||
| 1/A/922:924, 1/A/1392:1395 | NA | NA | ||
| 1/A/925:927, 1/A/1390:1391 | NA | NA | ||
| 1/A/933:936, 1/A/1379:1384 | NA | NA | ||
| 1/A/953:954, 1/A/1226:1228 | NA | NA | ||
| 1/A/1048:1050, 1/A/1208:1209 | NA | NA | ||
| 1/A/1050:1056, 1/A/1204:1208 | NA | NA | ||
| 1/A/1057:1058, 1/A/1199:1203 | NA | NA | ||
| 1/A/1060:1061, 1/A/1195:1197 | NA | NA | ||
| 1/A/1061:1063, 1/A/1193:1195 | NA | NA | ||
| 1/A/1124:1127, 1/A/1145:1149 | NA | NA | ||
| 1/A/1128:1132, 1/A/1142:1144 | NA | NA | ||
| 1/A/1158:1162, 1/A/1174:1181 | NA | NA | ||
| 1/A/1246:1253, 1/A/1284:1291 | NA | NA | ||
| 1/A/1255:1258, 1/A/1277:1282 | NA | NA | ||
| 1/A/1259:1262, 1/A/1273:1276 | NA | NA | ||
| 1/A/1303:1311, 1/A/1326:1334 | NA | NA | ||
| 1/A/1399:1401, 1/A/1501:1504 | NA | NA | ||
| 1/A/1401:1405, 1/A/1496:1501 | NA | NA | ||
| 1/A/1405:1409, 1/A/1491:1496 | NA | NA | ||
| 1/A/1412:1414, 1/A/1486:1488 | NA | NA | ||
| 1/A/1416:1419, 1/A/1481:1484 | NA | NA | ||
| 1/A/1431:1435, 1/A/1466:1469 | NA | NA | ||
| 1/A/1435:1437, 1/A/1464:1466 | NA | NA | ||
| 1/A/1440:1447, 1/A/1459:1461 | NA | NA | ||
| 1/B/24:30, 1/B/510:516 | Triple sheared with non-canonical cWW geometric IL_7RQB_001 | NA IL_66414.5* | ||
| 1/B/36:37, 1/B/442:444 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
| 1/B/43:44, 1/B/434:436 | Minor groove platform homologous IL_7RQB_003 | NA IL_06437.11* | ||
| 1/B/81:85, 1/B/97:105 | Kink-turn homologous IL_7RQB_004 | NA IL_29549.9* | ||
| 1/B/183:184, 1/B/212:214 | Single stack bend homologous IL_7RQB_005 | NA IL_04038.4* | ||
| 1/B/188:194, 1/B/201:208 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_006 | NA IL_04346.5* | ||
| 1/B/239:245, 1/B/253:258 | 7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007 | NA IL_35110.5* | ||
| 1/B/273A:273B, 1/B/363F:364 | Major groove platform homologous IL_7RQB_009 | NA IL_13730.12* | ||
| 1/B/273G:279, 1/B/361:363A | NA | NA | ||
| 1/B/280:284, 1/B/357:360 | tSH-tHW homologous IL_7RQB_011 | NA IL_08757.3* | ||
| 1/B/288:290, 1/B/350:353 | Isolated tHS basepair with bulges homologous IL_7RQB_012 | NA IL_38958.6* | ||
| 1/B/293:295, 1/B/343:347 | homologous IL_7RQB_013 | NA IL_69440.1* | ||
| 1/B/481:484, 1/B/496:509 | homologous IL_7RQB_014 | NA IL_60992.5* | ||
| 1/B/564:566, 1/B/575:577 | homologous IL_7RQB_015 | NA IL_01312.13* | ||
| 1/B/606:609B, 1/B/618B:622 | AAA cross-strand stack homologous IL_7RQB_016 | NA IL_56467.6* | ||
| 1/B/672:674, 1/B/806:808 | geometric IL_7RQB_017 | NA IL_01312.13* | ||
| 1/B/674:678, 1/B/799:806 | homologous IL_7RQB_018 | NA IL_17470.5* | ||
| 1/B/697:698, 1/B/763:765 | Single bulged A homologous IL_7RQB_019 | NA IL_80007.16* | ||
| 1/B/702:703, 1/B/728:730 | Single bulged G geometric IL_4V9F_026 | NA IL_59137.10* | ||
| 1/B/703:707, 1/B/724:728 | Triple sheared homologous IL_7RQB_021 | NA IL_56467.6* | ||
| 1/B/738:741, 1/B/756:758 | Major groove platform with extra cWW homologous IL_7RQB_022 | NA IL_95485.6* | ||
| 1/B/775:777, 1/B/787:791 | Multiple bulged bases geometric IL_7RQB_023 | NA IL_90991.5* | ||
| 1/B/837:838, 1/B/940:942 | Single stack bend homologous IL_7RQB_024 | NA IL_04038.4* | ||
| 1/B/844:846, 1/B/931:934 | Intercalated cWW geometric IL_7RQB_025 | NA IL_01312.13* | ||
| 1/B/846:850, 1/B/928:931 | homologous IL_7RQB_026 | NA IL_94165.1* | ||
| 1/B/858:862, 1/B/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge geometric IL_7RQB_027 | NA IL_83354.1* | ||
| 1/B/862:863, 1/B/913:915 | Minor groove platform homologous IL_7RQB_028 | NA IL_06437.11* | ||
| 1/B/864:868, 1/B/909:912 | C-loop homologous IL_7RQB_029 | NA IL_63596.4* | ||
| 1/B/874:879, 1/B/898:903 | NA | NA | ||
| 1/B/952:954, 1/B/963:965 | homologous IL_7RQB_034 | NA IL_01312.13* | ||
| 1/B/994:996, 1/B/1159:1160 | Single bulged C homologous IL_7RQB_035 | NA IL_61258.10* | ||
| 1/B/998:1002, 1/B/1153:1157 | UAA/GAN homologous IL_7RQB_036 | NA IL_53523.5* | ||
| 1/B/1004:1011, 1/B/1150:1151 | SSU/LSU pseudoknot homologous IL_7RQB_037 | NA IL_15861.6* | ||
| 1/B/1011:1013, 1/B/1149:1150 | Single bulged U geometric IL_7RQB_038 | NA IL_83039.11* | ||
| 1/B/1018:1024, 1/B/1140:1144 | geometric IL_4WF9_039 | NA IL_57188.3* | ||
| 1/B/1024:1030, 1/B/1124:1140 | homologous IL_7RQB_040 | NA IL_55786.1* | ||
| 1/B/1031:1034, 1/B/1121:1123 | Isolated non-canonical cWW with bulges homologous IL_7RQB_041 | NA IL_55456.1* | ||
| 1/B/1042:1051, 1/B/1108:1113 | NA | NA | ||
| 1/B/1196:1198, 1/B/1247:1250 | Isolated cWS basepair homologous IL_7RQB_045 | NA IL_67621.5* | ||
| 1/B/1202:1206, 1/B/1240:1243 | homologous IL_7RQB_046 | NA IL_68574.2* | ||
| 1/B/1208:1215, 1/B/1234:1238 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
| 1/B/1219:1221, 1/B/1229:1230 | Single bulged A homologous IL_7RQB_048 | NA IL_80007.16* | ||
| 1/B/1262:1269, 1/B/2011:2017 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049 | NA IL_04346.5* | ||
| 1/B/1310:1313, 1/B/1603:1604 | Major groove platform; stack outside cWW homologous IL_7RQB_050 | NA IL_70995.6* | ||
| 1/B/1319:1323, 1/B/1331:1333 | C-loop homologous IL_7RQB_051 | NA IL_63596.4* | ||
| 1/B/1351:1355, 1/B/1376:1380 | UAA/GAN homologous IL_7RQB_052 | NA IL_53523.5* | ||
| 1/B/1357:1361, 1/B/1370:1374 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
| 1/B/1415:1416, 1/B/1582:1587 | homologous IL_7RQB_054 | NA IL_67474.3* | ||
| 1/B/1417:1421, 1/B/1577:1581 | UAA/GAN homologous IL_7RQB_055 | NA IL_53523.5* | ||
| 1/B/1433:1435, 1/B/1557:1560 | Isolated tWW turn homologous IL_7RQB_056 | NA IL_54997.5* | ||
| 1/B/1437:1440, 1/B/1551:1555 | tSH-tHW homologous IL_7RQB_057 | NA IL_08757.3* | ||
| 1/B/1449:1450, 1/B/1461:1462 | NA | NA | ||
| 1/B/1450:1451, 1/B/1459:1461 | Single bulged A geometric IL_7RQB_059 | NA IL_80007.16* | ||
| 1/B/1469:1473, 1/B/1520:1523 | UAA/GAN homologous IL_7RQB_060 | NA IL_53523.5* | ||
| 1/B/1481:1483, 1/B/1506:1512 | homologous IL_7RQB_061 | NA IL_46464.1* | ||
| 1/B/1489:1491, 1/B/1499:1500 | Single bulged A homologous IL_7RQB_062 | NA IL_40508.4* | ||
| 1/B/1526:1530, 1/B/1541:1546B | homologous IL_7RQB_063 | NA IL_89836.1* | ||
| 1/B/1651:1656, 1/B/2004:2006 | homologous IL_7RQB_064 | NA IL_12566.2* | ||
| 1/B/1663:1665, 1/B/1995:1997 | Isolated tWW turn homologous IL_7RQB_065 | NA IL_54997.5* | ||
| 1/B/1666:1669, 1/B/1993:1994 | Major groove platform; stack outside cWW geometric IL_7RQB_066 | NA IL_80663.10* | ||
| 1/B/1669:1674, 1/B/1990:1993 | Intercalated tWH homologous IL_7RQB_067 | NA IL_01312.13* | ||
| 1/B/1686:1691, 1/B/1696:1702 | tSH-tSH-tHH-tHS geometric IL_7RQB_068 | NA IL_66584.5* | ||
| 1/B/1770:1771, 1/B/1980:1982 | Single bulged A homologous IL_7RQB_069 | NA IL_80007.16* | ||
| 1/B/1798:1804, 1/B/1813:1821 | Kink-turn related homologous IL_7RQB_070 | NA IL_17069.3* | ||
| 1/B/1837:1840, 1/B/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket geometric IL_7RQB_071 | NA IL_31836.1* | ||
| 1/B/1840:1842, 1/B/1898:1902 | NA | NA | ||
| 1/B/1846:1849, 1/B/1893:1894 | Minor groove platform homologous IL_7RQB_073 | NA IL_06437.11* | ||
| 1/B/1851:1855, 1/B/1887:1891 | UAA/GAN with extra pair homologous IL_7RQB_074 | NA IL_34907.2* | ||
| 1/B/1856:1860, 1/B/1882:1886 | Triple sheared homologous IL_7RQB_075 | NA IL_56467.6* | ||
| 1/B/1933:1934, 1/B/1964:1967 | Multiple bulged bases homologous IL_7RQB_076 | NA IL_69632.1* | ||
| 1/B/1934:1945, 1/B/1961:1964 | geometric IL_4WF9_077 | NA IL_70285.1* | ||
| 1/B/2050:2052, 1/B/2617:2618 | Major groove platform homologous IL_7RQB_078 | NA IL_80663.10* | ||
| 1/B/2054:2057, 1/B/2611:2615 | NA | NA | ||
| 1/B/2067:2069, 1/B/2442:2443 | Single bulged U homologous IL_7RQB_080 | NA IL_83039.11* | ||
| 1/B/2070:2071, 1/B/2438:2441 | Minor groove platform homologous IL_7RQB_081 | NA IL_06437.11* | ||
| 1/B/2081:2083, 1/B/2236:2239 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | NA IL_38958.6* | ||
| 1/B/2085:2087, 1/B/2232:2234 | homologous IL_7RQB_083 | NA IL_01312.13* | ||
| 1/B/2107:2110, 1/B/2179:2182 | Tandem non-canonical cWW pairs geometric IL_1D4R_001 | NA IL_85877.10* | ||
| 1/B/2110:2120, 1/B/2178:2179 | geometric IL_3U4M_002 | NA IL_45944.2* | ||
| 1/B/2297:2299, 1/B/2317:2321 | Isolated tHS basepair with bulges geometric IL_7RQB_088 | NA IL_38958.6* | ||
| 1/B/2350:2353, 1/B/2364:2367 | Double sheared homologous IL_7RQB_089 | NA IL_09705.7* | ||
| 1/B/2401:2403, 1/B/2414:2415 | Major groove platform homologous IL_7RQB_090 | NA IL_80663.10* | ||
| 1/B/2453:2454, 1/B/2498:2500 | Single stack bend geometric IL_7RQB_091 | NA IL_04038.4* | ||
| 1/B/2454:2455, 1/B/2496:2498 | Major groove platform homologous IL_7RQB_092 | NA IL_80663.10* | ||
| 1/B/2457:2459, 1/B/2493:2494 | Major groove platform geometric IL_7A0S_085 | NA IL_80663.10* | ||
| 1/B/2459:2461, 1/B/2489:2493 | Major groove minor groove platform with extra cWW homologous IL_7RQB_094 | NA IL_96042.4* | ||
| 1/B/2466:2470, 1/B/2480:2484 | Triple sheared homologous IL_7RQB_095 | NA IL_56467.6* | ||
| 1/B/2507:2508, 1/B/2580:2582 | Major groove platform homologous IL_7RQB_096 | NA IL_02060.4* | ||
| 1/B/2510:2512, 1/B/2574:2578 | Isolated non-canonical cWW with bulges geometric IL_5J7L_340 | NA IL_01312.13* | ||
| 1/B/2512:2513, 1/B/2571:2574 | Multiple bulged bases homologous IL_7RQB_098 | NA IL_13730.12* | ||
| 1/B/2522:2523, 1/B/2540:2543 | Minor groove platform with intercalation homologous IL_7RQB_099 | NA IL_95601.1* | ||
| 1/B/2588:2590, 1/B/2604:2606 | homologous IL_7RQB_100 | NA | ||
| 1/B/2591:2592, 1/B/2601:2603 | Single bulged A geometric IL_4V9F_090 | NA IL_80007.16* | ||
| 1/B/2636:2640, 1/B/2774:2782 | tSH-tHS-tHW homologous IL_7RQB_102 | NA IL_34907.2* | ||
| 1/B/2652:2658, 1/B/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge homologous IL_7RQB_103 | NA IL_35110.5* | ||
| 1/B/2680:2684, 1/B/2725:2727 | C-loop homologous IL_7RQB_104 | NA IL_63596.4* | ||
| 1/B/2687:2691, 1/B/2718:2722 | homologous IL_7RQB_105 | NA IL_08296.3* | ||
| 1/B/2695:2696, 1/B/2711:2714 | Multiple bulged bases homologous IL_7RQB_106 | NA IL_77034.1* | ||