4WSD | Motifs

227 Hairpin loops
375 Internal loops
33 Junction loops

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	HL_4WSD_001	1/13/12:22	NA	NA
2	HL_4WSD_003	1/13/157:164	NA	NA
3	HL_4WSD_004	1/13/186F:191A	NA	NA
4	HL_4WSD_005	1/13/201:216	NA	NA
5	HL_4WSD_006	1/13/259:267	NA	NA
6	HL_4WSD_007	1/13/296:301	NA	NA
7	HL_4WSD_008	1/13/320:333	NA	NA
8	HL_4WSD_009	1/13/342:347	NA	NA
9	HL_4WSD_010	1/13/379:384	NA	NA
10	HL_4WSD_011	1/13/419:424	NA	NA
11	HL_4WSD_012	1/13/458:474	NA	NA
12	HL_4WSD_013	1/13/522:527	NA	NA
13	HL_4WSD_014	1/13/617:623	NA	NA
14	HL_4WSD_015	1/13/689:698	NA	NA
15	HL_4WSD_016	1/13/726:731	NA	NA
16	HL_4WSD_017	1/13/786:796	NA	NA
17	HL_4WSD_018	1/13/838:848	NA	NA
18	HL_4WSD_019	1/13/862:867	NA	NA
19	HL_4WSD_020	1/13/897:902	NA	NA
20	HL_4WSD_021	1/13/963:972	NA	NA
21	HL_4WSD_022	1/13/1012:1017	NA	NA
22	HL_4WSD_023	1/13/1076:1081	NA	NA
23	HL_4WSD_024	1/13/1089:1096	NA	NA
24	HL_4WSD_025	1/13/1134:1140	NA	NA
25	HL_4WSD_026	1/13/1165:1171	NA	NA
26	HL_4WSD_027	1/13/1265:1270	NA	NA
27	HL_4WSD_028	1/13/1314:1323	NA	NA
28	HL_4WSD_029	1/13/1356:1366	NA	NA
29	HL_4WSD_030	1/13/1449:1454	NA	NA
30	HL_4WSD_031	1/13/1515:1520	NA	NA
31	HL_4WSD_032	1/14/59:68	homologous HL_7RQB_001	NA HL_29414.1*
32	HL_4WSD_033	1/14/87:95	homologous HL_7RQB_002	NA HL_17926.5*
33	HL_4WSD_034	1/14/123:128	homologous HL_7RQB_003	NA HL_62869.3*
34	HL_4WSD_035	1/14/137A:141A	homologous HL_7RQB_004	NA HL_86069.1*
35	HL_4WSD_037	1/14/194:201	geometric HL_7A0S_006	NA HL_23481.5*
36	HL_4WSD_038	1/14/225:230	homologous HL_7RQB_007	NA HL_06569.2*
37	HL_4WSD_039	1/14/246:252	homologous HL_7RQB_008	NA HL_67216.5*
38	HL_4WSD_040	1/14/270K:270N	NA	NA
39	HL_4WSD_041	1/14/305:312	homologous HL_7RQB_010	NA HL_68493.6*
40	HL_4WSD_042	1/14/319:323	homologous HL_7RQB_011	NA HL_98557.5*
41	HL_4WSD_043	1/14/327:335	homologous HL_7RQB_012	NA HL_08002.6*
42	HL_4WSD_044	1/14/382:392	homologous HL_7RQB_013	NA HL_91503.3*
43	HL_4WSD_045	1/14/410:417	homologous HL_7RQB_014	NA HL_32512.8*
44	HL_4WSD_046	1/14/462:467	homologous HL_7RQB_015	NA HL_43074.18*
45	HL_4WSD_047	1/14/487:493	homologous HL_7RQB_016	NA HL_43074.18*
46	HL_4WSD_048	1/14/544:549	GNRA geometric HL_6UFG_004	NA HL_43074.18*
47	HL_4WSD_049	1/14/566:575	geometric HL_7RQB_018	NA HL_33239.17*
48	HL_4WSD_050	1/14/611:617	homologous HL_7RQB_019	NA HL_49196.4*
49	HL_4WSD_051	1/14/629:634	homologous HL_7RQB_020	NA HL_43074.18*
50	HL_4WSD_052	1/14/641:647	homologous HL_7RQB_021	NA HL_02361.6*
51	HL_4WSD_054	1/14/712:719	homologous HL_7RQB_022	NA HL_93727.5*
52	HL_4WSD_055	1/14/744:753	homologous HL_7RQB_023	NA HL_39334.5*
53	HL_4WSD_056	1/14/779:785	homologous HL_7RQB_024	NA HL_16898.3*
54	HL_4WSD_057	1/14/826:831	homologous HL_7RQB_025	NA HL_15942.5*
55	HL_4WSD_059	1/14/955:962	homologous HL_7RQB_027	NA HL_43074.18*
56	HL_4WSD_060	1/14/978:985	homologous HL_7RQB_028	NA HL_72451.5*
57	HL_4WSD_063	1/14/1168:1181	NA	NA
58	HL_4WSD_064	1/14/1223:1228	homologous HL_7RQB_032	NA HL_43074.18*
59	HL_4WSD_065	1/14/1281:1289	homologous HL_7RQB_033	NA HL_33239.17*
60	HL_4WSD_066	1/14/1324:1330	homologous HL_7RQB_034	NA HL_86880.5*
61	HL_4WSD_067	1/14/1363:1368	homologous HL_7RQB_035	NA HL_43074.18*
62	HL_4WSD_068	1/14/1389:1398	homologous HL_7RQB_036	NA HL_78457.4*
63	HL_4WSD_069	1/14/1451:1459	homologous HL_7RQB_037	NA HL_71540.1*
64	HL_4WSD_070	1/14/1492:1498	homologous HL_7RQB_038	NA HL_86880.5*
65	HL_4WSD_071	1/14/1533:1538	geometric HL_4V88_198	NA HL_30541.1*
66	HL_4WSD_072	1/14/1565:1568	homologous HL_7RQB_039	NA HL_69353.7*
67	HL_4WSD_073	1/14/1612:1619	homologous HL_7RQB_040	NA HL_66171.3*
68	HL_4WSD_074	1/14/1630A:1635	homologous HL_7RQB_041	NA HL_86880.5*
69	HL_4WSD_075	1/14/1691:1696	homologous HL_7RQB_042	NA HL_79299.11*
70	HL_4WSD_076	1/14/1727:1733	NA	NA
71	HL_4WSD_077	1/14/1752:1756	homologous HL_7RQB_044	NA HL_79272.3*
72	HL_4WSD_078	1/14/1777:1787	homologous HL_7RQB_045	NA HL_43613.4*
73	HL_4WSD_079	1/14/1806:1811	homologous HL_7RQB_046	NA HL_43074.18*
74	HL_4WSD_080	1/14/1864:1878	homologous HL_7RQB_047	NA HL_43074.18*
75	HL_4WSD_081	1/14/1910:1920	geometric HL_5TBW_049	NA HL_98248.1*
76	HL_4WSD_082	1/14/1949:1957	homologous HL_7RQB_049	NA HL_53760.4*
77	HL_4WSD_083	1/14/1992:1996	NA	NA
78	HL_4WSD_084	1/14/2027:2036	homologous HL_7RQB_050	NA HL_90642.5*
79	HL_4WSD_085	1/14/2143:2148	homologous HL_7RQB_051	NA
80	HL_4WSD_086	1/14/2209:2215	homologous HL_7RQB_052	NA HL_82131.1*
81	HL_4WSD_087	1/14/2248:2256	homologous HL_7RQB_053	NA
82	HL_4WSD_088	1/14/2264:2276	homologous HL_7RQB_054	NA HL_19870.5*
83	HL_4WSD_089	1/14/2302:2314	NA	NA
84	HL_4WSD_090	1/14/2324:2331	homologous HL_7RQB_056	NA HL_46142.8*
85	HL_4WSD_091	1/14/2355:2362	homologous HL_7RQB_057	NA HL_93727.5*
86	HL_4WSD_092	1/14/2374:2379	homologous HL_7RQB_058	NA HL_43074.18*
87	HL_4WSD_093	1/14/2404:2413	homologous HL_7RQB_059	NA HL_48376.4*
88	HL_4WSD_095	1/14/2528:2535	homologous HL_7RQB_061	NA HL_92681.5*
89	HL_4WSD_096	1/14/2551:2557	geometric HL_4WF9_058	NA HL_26055.6*
90	HL_4WSD_097	1/14/2594:2599	homologous HL_7RQB_063	NA HL_43074.18*
91	HL_4WSD_098	1/14/2658:2663	GNRA geometric HL_5B2T_003	NA HL_43074.18*
92	HL_4WSD_099	1/14/2701:2706	homologous HL_7RQB_065	NA HL_31583.1*
93	HL_4WSD_100	1/14/2745:2759	homologous HL_7RQB_066	NA HL_56677.5*
94	HL_4WSD_101	1/14/2819:2827	homologous HL_7RQB_068	NA HL_05018.6*
95	HL_4WSD_102	1/14/2856:2861	homologous HL_7RQB_069	NA HL_43074.18*
96	HL_4WSD_103	1/16/38:44	homologous HL_5TBW_185	NA HL_02733.5*
97	HL_4WSD_104	1/16/86:90	GNRA homologous HL_5TBW_186	NA HL_43074.18*
98	HL_4WSD_105	1/1G/12:22	NA	NA
99	HL_4WSD_107	1/1G/158:163	NA	NA
100	HL_4WSD_108	1/1G/186F:191A	NA	NA
101	HL_4WSD_109	1/1G/201:216	NA	NA
102	HL_4WSD_110	1/1G/259:267	NA	NA
103	HL_4WSD_111	1/1G/296:301	NA	NA
104	HL_4WSD_112	1/1G/320:333	NA	NA
105	HL_4WSD_113	1/1G/342:347	NA	NA
106	HL_4WSD_114	1/1G/379:384	NA	NA
107	HL_4WSD_115	1/1G/419:424	NA	NA
108	HL_4WSD_116	1/1G/457:475	NA	NA
109	HL_4WSD_117	1/1G/522:527	NA	NA
110	HL_4WSD_118	1/1G/617:623	NA	NA
111	HL_4WSD_119	1/1G/689:698	NA	NA
112	HL_4WSD_120	1/1G/726:731	NA	NA
113	HL_4WSD_121	1/1G/786:796	NA	NA
114	HL_4WSD_122	1/1G/838:848	NA	NA
115	HL_4WSD_123	1/1G/862:867	NA	NA
116	HL_4WSD_124	1/1G/897:902	NA	NA
117	HL_4WSD_126	1/1G/1010:1019	NA	NA
118	HL_4WSD_128	1/1G/1076:1081	NA	NA
119	HL_4WSD_129	1/1G/1089:1096	NA	NA
120	HL_4WSD_130	1/1G/1134:1140	NA	NA
121	HL_4WSD_131	1/1G/1165:1171	NA	NA
122	HL_4WSD_132	1/1G/1265:1270	NA	NA
123	HL_4WSD_133	1/1G/1314:1323	NA	NA
124	HL_4WSD_134	1/1G/1356:1366	NA	NA
125	HL_4WSD_135	1/1G/1449:1454	NA	NA
126	HL_4WSD_136	1/1G/1515:1520	NA	NA
127	HL_4WSD_137	1/1H/59:68	homologous HL_7RQB_001	NA HL_29414.1*
128	HL_4WSD_138	1/1H/87:95	homologous HL_7RQB_002	NA HL_17926.5*
129	HL_4WSD_139	1/1H/123:128	homologous HL_7RQB_003	NA HL_62869.3*
130	HL_4WSD_140	1/1H/137A:141A	homologous HL_7RQB_004	NA HL_86069.1*
131	HL_4WSD_141	1/1H/155:171	geometric HL_4YAZ_004	NA HL_57052.3*
132	HL_4WSD_142	1/1H/194:201	geometric HL_7RQB_006	NA HL_23481.5*
133	HL_4WSD_143	1/1H/225:230	homologous HL_7RQB_007	NA HL_06569.2*
134	HL_4WSD_144	1/1H/246:252	homologous HL_7RQB_008	NA HL_67216.5*
135	HL_4WSD_145	1/1H/270J:270P	geometric HL_5TBW_012	NA HL_94386.1*
136	HL_4WSD_146	1/1H/305:312	homologous HL_7RQB_010	NA HL_68493.6*
137	HL_4WSD_147	1/1H/319:323	homologous HL_7RQB_011	NA HL_98557.5*
138	HL_4WSD_148	1/1H/327:335	homologous HL_7RQB_012	NA HL_08002.6*
139	HL_4WSD_149	1/1H/382:392	homologous HL_7RQB_013	NA HL_91503.3*
140	HL_4WSD_150	1/1H/410:417	homologous HL_7RQB_014	NA HL_32512.8*
141	HL_4WSD_151	1/1H/462:467	homologous HL_7RQB_015	NA HL_43074.18*
142	HL_4WSD_152	1/1H/487:493	homologous HL_7RQB_016	NA HL_43074.18*
143	HL_4WSD_153	1/1H/544:549	geometric HL_5U3G_001	NA HL_40469.1*
144	HL_4WSD_154	1/1H/566:575	homologous HL_7RQB_018	NA HL_33239.17*
145	HL_4WSD_155	1/1H/611:617	geometric HL_7A0S_019	NA HL_22515.1*
146	HL_4WSD_156	1/1H/629:634	homologous HL_7RQB_020	NA HL_43074.18*
147	HL_4WSD_157	1/1H/641:647	homologous HL_7RQB_021	NA HL_02361.6*
148	HL_4WSD_159	1/1H/712:719	homologous HL_7RQB_022	NA HL_93727.5*
149	HL_4WSD_160	1/1H/744:753	homologous HL_7RQB_023	NA HL_39334.5*
150	HL_4WSD_161	1/1H/779:785	geometric HL_7A0S_023	NA HL_77081.1*
151	HL_4WSD_162	1/1H/826:831	homologous HL_7RQB_025	NA HL_15942.5*
152	HL_4WSD_164	1/1H/955:962	homologous HL_7RQB_027	NA HL_43074.18*
153	HL_4WSD_165	1/1H/978:985	homologous HL_7RQB_028	NA HL_72451.5*
154	HL_4WSD_168	1/1H/1170:1179	NA	NA
155	HL_4WSD_169	1/1H/1223:1228	homologous HL_7RQB_032	NA HL_43074.18*
156	HL_4WSD_170	1/1H/1281:1289	homologous HL_7RQB_033	NA HL_33239.17*
157	HL_4WSD_171	1/1H/1324:1330	homologous HL_7RQB_034	NA HL_86880.5*
158	HL_4WSD_172	1/1H/1363:1368	homologous HL_7RQB_035	NA HL_43074.18*
159	HL_4WSD_173	1/1H/1389:1398	homologous HL_7RQB_036	NA HL_78457.4*
160	HL_4WSD_174	1/1H/1451:1459	homologous HL_7RQB_037	NA HL_71540.1*
161	HL_4WSD_175	1/1H/1492:1498	homologous HL_7RQB_038	NA HL_86880.5*
162	HL_4WSD_177	1/1H/1565:1568	homologous HL_7RQB_039	NA HL_69353.7*
163	HL_4WSD_178	1/1H/1612:1619	homologous HL_7RQB_040	NA HL_66171.3*
164	HL_4WSD_179	1/1H/1630A:1635	homologous HL_7RQB_041	NA HL_86880.5*
165	HL_4WSD_180	1/1H/1691:1696	homologous HL_7RQB_042	NA HL_79299.11*
166	HL_4WSD_181	1/1H/1727:1733	homologous HL_7RQB_043	NA HL_49638.1*
167	HL_4WSD_182	1/1H/1752:1756	homologous HL_7RQB_044	NA HL_79272.3*
168	HL_4WSD_183	1/1H/1777:1787	homologous HL_7RQB_045	NA HL_43613.4*
169	HL_4WSD_184	1/1H/1806:1811	homologous HL_7RQB_046	NA HL_43074.18*
170	HL_4WSD_185	1/1H/1864:1878	homologous HL_7RQB_047	NA HL_43074.18*
171	HL_4WSD_186	1/1H/1910:1920	geometric HL_5TBW_049	NA HL_98248.1*
172	HL_4WSD_187	1/1H/1949:1957	homologous HL_7RQB_049	NA HL_53760.4*
173	HL_4WSD_188	1/1H/2027:2036	homologous HL_7RQB_050	NA HL_90642.5*
174	HL_4WSD_189	1/1H/2143:2148	geometric HL_2Y9H_003	NA HL_98557.5*
175	HL_4WSD_190	1/1H/2209:2215	homologous HL_7RQB_052	NA HL_82131.1*
176	HL_4WSD_191	1/1H/2248:2256	homologous HL_7RQB_053	NA
177	HL_4WSD_192	1/1H/2264:2276	homologous HL_7RQB_054	NA HL_19870.5*
178	HL_4WSD_193	1/1H/2303:2313	homologous HL_7RQB_055	NA HL_11805.3*
179	HL_4WSD_194	1/1H/2324:2331	homologous HL_7RQB_056	NA HL_46142.8*
180	HL_4WSD_195	1/1H/2355:2362	homologous HL_7RQB_057	NA HL_93727.5*
181	HL_4WSD_196	1/1H/2374:2379	homologous HL_7RQB_058	NA HL_43074.18*
182	HL_4WSD_197	1/1H/2404:2413	homologous HL_7RQB_059	NA HL_48376.4*
183	HL_4WSD_198	1/1H/2471:2479	geometric HL_361D_002	NA HL_18218.2*
184	HL_4WSD_199	1/1H/2528:2535	homologous HL_7RQB_061	NA HL_92681.5*
185	HL_4WSD_200	1/1H/2551:2557	geometric HL_4WF9_058	NA HL_26055.6*
186	HL_4WSD_201	1/1H/2594:2599	homologous HL_7RQB_063	NA HL_43074.18*
187	HL_4WSD_202	1/1H/2658:2663	homologous HL_7RQB_064	NA HL_43074.18*
188	HL_4WSD_203	1/1H/2701:2706	homologous HL_7RQB_065	NA HL_31583.1*
189	HL_4WSD_204	1/1H/2745:2759	homologous HL_7RQB_066	NA HL_56677.5*
190	HL_4WSD_206	1/1H/2819:2827	homologous HL_7RQB_068	NA HL_05018.6*
191	HL_4WSD_207	1/1H/2856:2861	homologous HL_7RQB_069	NA HL_43074.18*
192	HL_4WSD_208	1/1J/38:44	homologous HL_5TBW_185	NA HL_02733.5*
193	HL_4WSD_209	1/1J/86:90	NA	NA
194	HL_4WSD_211	1/1K/30:40	NA	NA
195	HL_4WSD_212	1/1K/53:61	NA	NA
196	HL_4WSD_213	1/1L/12:23	NA	NA
197	HL_4WSD_214	1/1L/30:40	NA	NA
198	HL_4WSD_215	1/1L/53:61	NA	NA
199	HL_4WSD_216	1/2K/13:23	NA	NA
200	HL_4WSD_217	1/2K/32:40	NA	NA
201	HL_4WSD_218	1/2K/54:62	NA	NA
202	HL_4WSD_219	1/2L/13:23	NA	NA
203	HL_4WSD_220	1/2L/32:40	NA	NA
204	HL_4WSD_221	1/2L/54:62	NA	NA
205	HL_4WSD_222	1/3K/11:24	NA	NA
206	HL_4WSD_224	1/3K/53:61	NA	NA
207	HL_4WSD_225	1/3L/13:22	NA	NA
208	HL_4WSD_226	1/3L/31:39	NA	NA
209	HL_4WSD_227	1/3L/53:61	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_4WSD_002	missing nts	NA
2	HL_4WSD_036	missing nts	NA
3	HL_4WSD_053	missing nts	NA
4	HL_4WSD_058	missing nts	NA
5	HL_4WSD_061	missing nts	NA
6	HL_4WSD_062	missing nts	NA
7	HL_4WSD_094	missing nts	geometric HL_2ZZM_002
8	HL_4WSD_106	missing nts	NA
9	HL_4WSD_125	all high RSRZ	NA
10	HL_4WSD_127	missing nts	NA
11	HL_4WSD_158	missing nts	NA
12	HL_4WSD_163	missing nts	NA
13	HL_4WSD_166	missing nts	geometric HL_4V88_198
14	HL_4WSD_167	missing nts	NA
15	HL_4WSD_176	missing nts	NA
16	HL_4WSD_205	missing nts	NA
17	HL_4WSD_210	missing nts	NA
18	HL_4WSD_223	missing nts	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	IL_4WSD_001	1/13/30:32, 1/13/552:553	NA	NA
2	IL_4WSD_002	1/13/44:45, 1/13/396:398	NA	NA
3	IL_4WSD_003	1/13/47:52, 1/13/359:361	NA	NA
4	IL_4WSD_004	1/13/54:56, 1/13/356:357	NA	NA
5	IL_4WSD_005	1/13/63:66, 1/13/103:104	NA	NA
6	IL_4WSD_006	1/13/67:69, 1/13/99:102	NA	NA
7	IL_4WSD_007	1/13/129:131, 1/13/231:232	NA	NA
8	IL_4WSD_008	1/13/132:136, 1/13/227:230	NA	NA
9	IL_4WSD_009	1/13/148:154, 1/13/167:174	NA	NA
10	IL_4WSD_010	1/13/155:157, 1/13/164:166	NA	NA
11	IL_4WSD_011	1/13/184:186B, 1/13/191E:193	NA	NA
12	IL_4WSD_012	1/13/186C:186E, 1/13/191B:191D	NA	NA
13	IL_4WSD_013	1/13/242:247, 1/13/277:284	NA	NA
14	IL_4WSD_014	1/13/249:252, 1/13/274:275	NA	NA
15	IL_4WSD_015	1/13/292:293, 1/13/304:308	NA	NA
16	IL_4WSD_016	1/13/367:369, 1/13/392:393	NA	NA
17	IL_4WSD_017	1/13/371:375, 1/13/389:390	NA	NA
18	IL_4WSD_018	1/13/375:376, 1/13/387:389	NA	NA
19	IL_4WSD_019	1/13/409:417, 1/13/426:433	NA	NA
20	IL_4WSD_020	1/13/446:450, 1/13/483:488	NA	NA
21	IL_4WSD_021	1/13/450:456, 1/13/476:483	NA	NA
22	IL_4WSD_022	1/13/504:511, 1/13/540:541	NA	NA
23	IL_4WSD_023	1/13/515:521, 1/13/528:536	NA	NA
24	IL_4WSD_024	1/13/569:575, 1/13/880:881	NA	NA
25	IL_4WSD_025	1/13/580:584, 1/13/757:761	NA	NA
26	IL_4WSD_026	1/13/594:596, 1/13/644:645	NA	NA
27	IL_4WSD_027	1/13/597:599, 1/13/639:643	NA	NA
28	IL_4WSD_029	1/13/605:612, 1/13/628:633	NA	NA
29	IL_4WSD_030	1/13/654:655, 1/13/751:754	NA	NA
30	IL_4WSD_031	1/13/657:658, 1/13/747:749	NA	NA
31	IL_4WSD_032	1/13/662:666, 1/13/740:743	NA	NA
32	IL_4WSD_033	1/13/673:678, 1/13/712:717	NA	NA
33	IL_4WSD_034	1/13/683:688, 1/13/699:707	NA	NA
34	IL_4WSD_035	1/13/774:778, 1/13/804:805	NA	NA
35	IL_4WSD_036	1/13/779:783, 1/13/799:803	NA	NA
36	IL_4WSD_037	1/13/887:894, 1/13/905:910	NA	NA
37	IL_4WSD_038	1/13/922:923, 1/13/1393:1395	NA	NA
38	IL_4WSD_039	1/13/925:927, 1/13/1390:1391	NA	NA
39	IL_4WSD_040	1/13/933:935, 1/13/1380:1384	NA	NA
40	IL_4WSD_041	1/13/953:954, 1/13/1226:1228	NA	NA
41	IL_4WSD_042	1/13/993:997, 1/13/1044:1045	NA	NA
42	IL_4WSD_044	1/13/1002:1006, 1/13/1023:1038	NA	NA
43	IL_4WSD_045	1/13/1007:1009, 1/13/1020:1022	NA	NA
44	IL_4WSD_046	1/13/1048:1050, 1/13/1208:1209	NA	NA
45	IL_4WSD_047	1/13/1052:1056, 1/13/1204:1206	NA	NA
46	IL_4WSD_048	1/13/1057:1058, 1/13/1199:1203	NA	NA
47	IL_4WSD_049	1/13/1060:1061, 1/13/1195:1197	NA	NA
48	IL_4WSD_050	1/13/1061:1063, 1/13/1193:1195	NA	NA
49	IL_4WSD_051	1/13/1124:1132, 1/13/1142:1149	NA	NA
50	IL_4WSD_053	1/13/1247:1253, 1/13/1284:1290	NA	NA
51	IL_4WSD_054	1/13/1255:1258, 1/13/1277:1282	NA	NA
52	IL_4WSD_055	1/13/1259:1262, 1/13/1273:1276	NA	NA
53	IL_4WSD_056	1/13/1303:1308, 1/13/1329:1334	NA	NA
54	IL_4WSD_057	1/13/1399:1401, 1/13/1501:1504	NA	NA
55	IL_4WSD_058	1/13/1401:1404, 1/13/1497:1501	NA	NA
56	IL_4WSD_059	1/13/1405:1407, 1/13/1494:1496	NA	NA
57	IL_4WSD_060	1/13/1407:1409, 1/13/1491:1494	NA	NA
58	IL_4WSD_061	1/13/1412:1414, 1/13/1486:1488	NA	NA
59	IL_4WSD_062	1/13/1416:1419, 1/13/1481:1484	NA	NA
60	IL_4WSD_063	1/13/1431:1435, 1/13/1466:1469	NA	NA
61	IL_4WSD_064	1/13/1435:1437, 1/13/1464:1466	NA	NA
62	IL_4WSD_065	1/13/1440:1447, 1/13/1459:1461	NA	NA
63	IL_4WSD_066	1/14/24:30, 1/14/510:516	Triple sheared with non-canonical cWW homologous IL_7RQB_001	NA IL_66414.5*
64	IL_4WSD_067	1/14/36:37, 1/14/442:444	Single bulged A homologous IL_7RQB_002	NA IL_80007.16*
65	IL_4WSD_068	1/14/43:45, 1/14/433:436	Major groove platform with extra cWW geometric IL_4V9F_003	NA IL_95485.6*
66	IL_4WSD_069	1/14/81:85, 1/14/97:105	Kink-turn homologous IL_7RQB_004	NA IL_29549.9*
67	IL_4WSD_070	1/14/183:184, 1/14/212:214	Single stack bend homologous IL_7RQB_005	NA IL_04038.4*
68	IL_4WSD_071	1/14/188:194, 1/14/201:208	8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_006	NA IL_04346.5*
69	IL_4WSD_072	1/14/239:245, 1/14/253:258	7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007	NA IL_35110.5*
70	IL_4WSD_073	1/14/270J:270K, 1/14/270N:270P	Single bulged U homologous IL_7RQB_008	NA IL_83039.11*
71	IL_4WSD_074	1/14/271:272, 1/14/365:366	NA	NA
72	IL_4WSD_075	1/14/273:273A, 1/14/363E:364	Major groove platform homologous IL_7RQB_009	NA IL_13730.12*
73	IL_4WSD_076	1/14/273D:279, 1/14/361:363B	NA	NA
74	IL_4WSD_077	1/14/280:284, 1/14/357:360	tSH-tHW homologous IL_7RQB_011	NA IL_08757.3*
75	IL_4WSD_078	1/14/288:290, 1/14/350:353	Isolated tHS basepair with bulges homologous IL_7RQB_012	NA IL_38958.6*
76	IL_4WSD_079	1/14/293:295, 1/14/343:347	homologous IL_7RQB_013	NA IL_69440.1*
77	IL_4WSD_080	1/14/481:484, 1/14/496:509	homologous IL_7RQB_014	NA IL_60992.5*
78	IL_4WSD_081	1/14/564:566, 1/14/575:577	homologous IL_7RQB_015	NA IL_01312.13*
79	IL_4WSD_082	1/14/606:609A, 1/14/618A:622	AAA cross-strand stack homologous IL_7RQB_016	NA IL_56467.6*
80	IL_4WSD_083	1/14/672:674, 1/14/806:808	geometric IL_7RQB_017	NA IL_01312.13*
81	IL_4WSD_084	1/14/674:678, 1/14/799:806	homologous IL_7RQB_018	NA IL_17470.5*
82	IL_4WSD_085	1/14/697:698, 1/14/763:765	Single bulged A homologous IL_7RQB_019	NA IL_80007.16*
83	IL_4WSD_086	1/14/702:703, 1/14/728:730	Single bulged G geometric IL_7RQB_020	NA IL_59137.10*
84	IL_4WSD_087	1/14/703:707, 1/14/724:728	Triple sheared homologous IL_7RQB_021	NA IL_56467.6*
85	IL_4WSD_088	1/14/738:741, 1/14/756:758	Major groove platform with extra cWW homologous IL_7RQB_022	NA IL_95485.6*
86	IL_4WSD_089	1/14/775:777, 1/14/787:791	Multiple bulged bases homologous IL_7RQB_023	NA IL_90991.5*
87	IL_4WSD_090	1/14/837:838, 1/14/940:942	Single stack bend homologous IL_7RQB_024	NA IL_04038.4*
88	IL_4WSD_091	1/14/844:846, 1/14/931:934	Intercalated cWW geometric IL_7RQB_025	NA IL_01312.13*
89	IL_4WSD_092	1/14/846:850, 1/14/928:931	homologous IL_7RQB_026	NA IL_94165.1*
90	IL_4WSD_093	1/14/858:862, 1/14/915:919	5x5 Sarcin-Ricin with intercalated A; G-bulge homologous IL_7RQB_027	NA IL_83354.1*
91	IL_4WSD_094	1/14/862:863, 1/14/913:915	Minor groove platform geometric IL_4WF9_032	NA IL_06437.11*
92	IL_4WSD_095	1/14/864:868, 1/14/909:912	C-loop homologous IL_7RQB_029	NA IL_63596.4*
93	IL_4WSD_096	1/14/870:872, 1/14/905:907	Isolated cWS basepair homologous IL_7RQB_030	NA IL_67621.5*
94	IL_4WSD_098	1/14/952:954, 1/14/963:965	homologous IL_7RQB_034	NA IL_01312.13*
95	IL_4WSD_099	1/14/994:996, 1/14/1159:1160	Single bulged C homologous IL_7RQB_035	NA IL_61258.10*
96	IL_4WSD_100	1/14/998:1002, 1/14/1153:1157	UAA/GAN homologous IL_7RQB_036	NA IL_53523.5*
97	IL_4WSD_102	1/14/1004:1011, 1/14/1150:1151	NA	NA
98	IL_4WSD_103	1/14/1011:1013, 1/14/1149:1150	NA	NA
99	IL_4WSD_104	1/14/1018:1024, 1/14/1140:1144	homologous IL_7RQB_039	NA IL_57188.3*
100	IL_4WSD_105	1/14/1024:1030, 1/14/1124:1140	geometric IL_7RQB_040	NA IL_55786.1*
101	IL_4WSD_106	1/14/1031:1034, 1/14/1121:1123	Isolated non-canonical cWW with bulges homologous IL_7RQB_041	NA IL_55456.1*
102	IL_4WSD_108	1/14/1196:1198, 1/14/1247:1250	Isolated cWS basepair homologous IL_7RQB_045	NA IL_67621.5*
103	IL_4WSD_109	1/14/1202:1206, 1/14/1240:1243	homologous IL_7RQB_046	NA IL_68574.2*
104	IL_4WSD_110	1/14/1208:1215, 1/14/1234:1238	Kink-turn homologous IL_7RQB_047	NA IL_29549.9*
105	IL_4WSD_111	1/14/1219:1221, 1/14/1229A:1230	Single bulged A homologous IL_7RQB_048	NA IL_80007.16*
106	IL_4WSD_112	1/14/1262:1269, 1/14/2011:2017	8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049	NA IL_04346.5*
107	IL_4WSD_113	1/14/1310:1313, 1/14/1603:1604	Major groove platform; stack outside cWW homologous IL_7RQB_050	NA IL_70995.6*
108	IL_4WSD_114	1/14/1319:1324, 1/14/1330:1333	C-loop with extra cWW pair geometric IL_4V88_408	NA IL_51590.1*
109	IL_4WSD_115	1/14/1351:1355, 1/14/1376:1380	UAA/GAN homologous IL_7RQB_052	NA IL_53523.5*
110	IL_4WSD_116	1/14/1357:1361, 1/14/1370:1374	tSH-tHW-tHS homologous IL_7RQB_053	NA IL_39521.5*
111	IL_4WSD_117	1/14/1415:1416, 1/14/1582:1587	homologous IL_7RQB_054	NA IL_67474.3*
112	IL_4WSD_118	1/14/1417:1421, 1/14/1577:1581	UAA/GAN homologous IL_7RQB_055	NA IL_53523.5*
113	IL_4WSD_119	1/14/1433:1435, 1/14/1557:1560	Isolated tWW turn homologous IL_7RQB_056	NA IL_54997.5*
114	IL_4WSD_120	1/14/1437:1440, 1/14/1551:1555	tSH-tHW homologous IL_7RQB_057	NA IL_08757.3*
115	IL_4WSD_121	1/14/1448:1449A, 1/14/1462:1463	Single stack bend homologous IL_7RQB_058	NA IL_31836.1*
116	IL_4WSD_122	1/14/1450:1451, 1/14/1459:1461	Single bulged A geometric IL_7RQB_059	NA IL_80007.16*
117	IL_4WSD_123	1/14/1469:1473, 1/14/1520:1523	UAA/GAN homologous IL_7RQB_060	NA IL_53523.5*
118	IL_4WSD_124	1/14/1482:1483, 1/14/1506:1512	homologous IL_7RQB_061	NA IL_46464.1*
119	IL_4WSD_125	1/14/1489:1491, 1/14/1499:1500	Single bulged A homologous IL_7RQB_062	NA IL_40508.4*
120	IL_4WSD_126	1/14/1526:1530, 1/14/1541:1546	homologous IL_7RQB_063	NA IL_89836.1*
121	IL_4WSD_127	1/14/1651:1656, 1/14/2004:2006	homologous IL_7RQB_064	NA IL_12566.2*
122	IL_4WSD_128	1/14/1686:1691, 1/14/1696:1702	tSH-tSH-tHH-tHS geometric IL_7RQB_068	NA IL_66584.5*
123	IL_4WSD_129	1/14/1770:1771, 1/14/1980:1982	Single bulged A homologous IL_7RQB_069	NA IL_80007.16*
124	IL_4WSD_130	1/14/1798:1804, 1/14/1813:1821	Kink-turn related homologous IL_7RQB_070	NA IL_17069.3*
125	IL_4WSD_131	1/14/1837:1840, 1/14/1902:1903	Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071	NA IL_31836.1*
126	IL_4WSD_132	1/14/1841:1842, 1/14/1898:1901	Major groove outside cWW, minor groove, intercalation pocket geometric IL_5J7L_315	NA IL_13730.12*
127	IL_4WSD_133	1/14/1846:1849, 1/14/1893:1894	Minor groove platform homologous IL_7RQB_073	NA IL_06437.11*
128	IL_4WSD_134	1/14/1851:1855, 1/14/1887:1891	UAA/GAN with extra pair homologous IL_7RQB_074	NA IL_34907.2*
129	IL_4WSD_135	1/14/1856:1860, 1/14/1882:1886	Triple sheared homologous IL_7RQB_075	NA IL_56467.6*
130	IL_4WSD_136	1/14/1933:1934, 1/14/1964:1967	Multiple bulged bases geometric IL_7RQB_076	NA IL_69632.1*
131	IL_4WSD_137	1/14/1934:1945, 1/14/1961:1964	geometric IL_4WF9_077	NA IL_70285.1*
132	IL_4WSD_138	1/14/2050:2052, 1/14/2617:2618	Major groove platform homologous IL_7RQB_078	NA IL_80663.10*
133	IL_4WSD_139	1/14/2054:2057, 1/14/2611:2615	NA	NA
134	IL_4WSD_140	1/14/2067:2069, 1/14/2442:2443	Single bulged U homologous IL_7RQB_080	NA IL_83039.11*
135	IL_4WSD_141	1/14/2070:2071, 1/14/2438:2441	Minor groove platform homologous IL_7RQB_081	NA IL_06437.11*
136	IL_4WSD_142	1/14/2081:2083, 1/14/2236:2239	Isolated tHS basepair with bulges homologous IL_7RQB_082	NA IL_38958.6*
137	IL_4WSD_143	1/14/2085:2087, 1/14/2232:2234	homologous IL_7RQB_083	NA IL_01312.13*
138	IL_4WSD_144	1/14/2106:2110, 1/14/2179:2183	geometric IL_5BTM_001	NA IL_05867.1*
139	IL_4WSD_146	1/14/2121:2127, 1/14/2161:2177	NA	NA
140	IL_4WSD_147	1/14/2127:2137, 1/14/2155:2161	NA	NA
141	IL_4WSD_148	1/14/2137:2140, 1/14/2151:2155	NA	NA
142	IL_4WSD_149	1/14/2297:2299, 1/14/2317:2321	Isolated tHS basepair with bulges homologous IL_7RQB_088	NA IL_38958.6*
143	IL_4WSD_150	1/14/2350:2353, 1/14/2364:2367	Double sheared homologous IL_7RQB_089	NA IL_09705.7*
144	IL_4WSD_151	1/14/2401:2403, 1/14/2414:2415	Minor groove platform geometric IL_7TZS_003	NA IL_06437.11*
145	IL_4WSD_152	1/14/2453:2454, 1/14/2498:2500	Single stack bend geometric IL_7RQB_091	NA IL_04038.4*
146	IL_4WSD_153	1/14/2454:2455, 1/14/2496:2498	Major groove platform homologous IL_7RQB_092	NA IL_80663.10*
147	IL_4WSD_154	1/14/2456:2459, 1/14/2493:2495	Major groove platform with extra pair geometric IL_7RQB_093	NA IL_87630.5*
148	IL_4WSD_155	1/14/2459:2461, 1/14/2489:2493	Major groove minor groove platform with extra cWW homologous IL_7RQB_094	NA IL_96042.4*
149	IL_4WSD_156	1/14/2466:2470, 1/14/2480:2484	Triple sheared homologous IL_7RQB_095	NA IL_56467.6*
150	IL_4WSD_157	1/14/2507:2508, 1/14/2580:2582	Major groove platform homologous IL_7RQB_096	NA IL_02060.4*
151	IL_4WSD_158	1/14/2510:2512, 1/14/2574:2578	Isolated non-canonical cWW with bulges geometric IL_7RQB_097	NA IL_01312.13*

4WSD Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops