4WSD Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4WSD_001 | 1/13/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4WSD_003 | 1/13/157:164 | GNRA with near cWW | geometric HL_6CZR_215 NA | |
| HL_4WSD_005 | 1/13/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_4WSD_006 | 1/13/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_4WSD_007 | 1/13/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_4WSD_008 | 1/13/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4WSD_009 | 1/13/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_4WSD_010 | 1/13/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_4WSD_011 | 1/13/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_4WSD_012 | 1/13/458:474 | GNRA | homologous HL_6CZR_083 NA | |
| HL_4WSD_013 | 1/13/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_4WSD_014 | 1/13/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_4WSD_015 | 1/13/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_4WSD_016 | 1/13/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_4WSD_017 | 1/13/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4WSD_018 | 1/13/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_4WSD_019 | 1/13/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_4WSD_020 | 1/13/897:902 | GNRA | homologous HL_5J7L_020 HL_37824.7 | |
| HL_4WSD_021 | 1/13/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4WSD_022 | 1/13/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_4WSD_023 | 1/13/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_4WSD_024 | 1/13/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4WSD_025 | 1/13/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_4WSD_026 | 1/13/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_4WSD_027 | 1/13/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_4WSD_028 | 1/13/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4WSD_029 | 1/13/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4WSD_030 | 1/13/1449:1454 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_4WSD_031 | 1/13/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_4WSD_032 | 1/14/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4WSD_033 | 1/14/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_4WSD_034 | 1/14/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_4WSD_035 | 1/14/137A:141A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4WSD_037 | 1/14/194:201 | No text annotation | geometric HL_7A0S_006 HL_30068.2 | |
| HL_4WSD_038 | 1/14/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4WSD_039 | 1/14/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4WSD_040 | 1/14/270K:270N | No text annotation | ||
| HL_4WSD_041 | 1/14/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4WSD_042 | 1/14/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_4WSD_043 | 1/14/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_4WSD_230 | 1/14/383:391 | No text annotation | ||
| HL_4WSD_045 | 1/14/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4WSD_046 | 1/14/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4WSD_047 | 1/14/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_4WSD_048 | 1/14/544:549 | GNRA | geometric HL_6UFG_004 HL_37824.7 | |
| HL_4WSD_049 | 1/14/566:575 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_4WSD_050 | 1/14/611:617 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4WSD_051 | 1/14/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4WSD_052 | 1/14/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4WSD_053 | 1/14/654C:654R | No text annotation | ||
| HL_4WSD_054 | 1/14/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4WSD_055 | 1/14/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4WSD_056 | 1/14/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4WSD_057 | 1/14/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_4WSD_245 | 1/14/880:897 | No text annotation | ||
| HL_4WSD_059 | 1/14/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4WSD_060 | 1/14/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4WSD_061 | 1/14/1059:1079 | No text annotation | ||
| HL_4WSD_062 | 1/14/1092:1099 | No text annotation | ||
| HL_4WSD_246 | 1/14/1170:1179 | No text annotation | homologous HL_4WF9_030 NA | |
| HL_4WSD_064 | 1/14/1223:1228 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4WSD_065 | 1/14/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4WSD_066 | 1/14/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4WSD_067 | 1/14/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_4WSD_068 | 1/14/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4WSD_069 | 1/14/1451:1459 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_4WSD_070 | 1/14/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_4WSD_071 | 1/14/1533:1538 | No text annotation | geometric HL_4V88_198 NA | |
| HL_4WSD_072 | 1/14/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_4WSD_073 | 1/14/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4WSD_074 | 1/14/1630A:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4WSD_075 | 1/14/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_4WSD_076 | 1/14/1727:1733 | GNRA | homologous HL_9DFE_041 HL_37824.7 | |
| HL_4WSD_077 | 1/14/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4WSD_078 | 1/14/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_4WSD_079 | 1/14/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4WSD_080 | 1/14/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4WSD_081 | 1/14/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4WSD_082 | 1/14/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4WSD_083 | 1/14/1992:1996 | No text annotation | ||
| HL_4WSD_084 | 1/14/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4WSD_085 | 1/14/2143:2148 | No text annotation | homologous HL_7RQB_051 NA | |
| HL_4WSD_086 | 1/14/2209:2215 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_4WSD_087 | 1/14/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4WSD_088 | 1/14/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4WSD_089 | 1/14/2302:2314 | No text annotation | geometric HL_6D12_002 HL_48417.5 | |
| HL_4WSD_090 | 1/14/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4WSD_091 | 1/14/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4WSD_092 | 1/14/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.7 | |
| HL_4WSD_093 | 1/14/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4WSD_094 | 1/14/2471:2479 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_4WSD_095 | 1/14/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4WSD_096 | 1/14/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4WSD_097 | 1/14/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4WSD_098 | 1/14/2658:2663 | GNRA | geometric HL_5B2T_003 HL_37824.7 | |
| HL_4WSD_099 | 1/14/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4WSD_100 | 1/14/2745:2759 | No text annotation | homologous HL_7A0S_065 HL_74055.2 | |
| HL_4WSD_101 | 1/14/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4WSD_102 | 1/14/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4WSD_233 | 1/16/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_4WSD_103 | 1/16/38:44 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_4WSD_104 | 1/16/86:90 | GNRA | homologous HL_4V9F_072 HL_37824.7 | |
| HL_4WSD_105 | 1/1G/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4WSD_107 | 1/1G/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_4WSD_234 | 1/1G/186:191 | No text annotation | homologous HL_4LFB_004 HL_48417.5 | |
| HL_4WSD_109 | 1/1G/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_4WSD_110 | 1/1G/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_4WSD_111 | 1/1G/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_4WSD_112 | 1/1G/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4WSD_113 | 1/1G/342:347 | UNCG | homologous HL_5J7L_009 HL_34617.5 | |
| HL_4WSD_114 | 1/1G/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_4WSD_115 | 1/1G/419:424 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_4WSD_116 | 1/1G/457:475 | tRNA anticodon loop | geometric HL_3RG5_006 HL_04259.3 | |
| HL_4WSD_117 | 1/1G/522:527 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_4WSD_118 | 1/1G/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_4WSD_119 | 1/1G/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_4WSD_120 | 1/1G/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_4WSD_121 | 1/1G/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4WSD_122 | 1/1G/838:848 | Mini UNCG | geometric HL_4L8H_001 HL_48778.2 | |
| HL_4WSD_123 | 1/1G/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_4WSD_124 | 1/1G/897:902 | GNRA | homologous HL_5J7L_020 HL_37824.7 | |
| HL_4WSD_126 | 1/1G/1010:1019 | No text annotation | geometric HL_8KAL_008 NA | |
| HL_4WSD_127 | 1/1G/1028:1033 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_4WSD_128 | 1/1G/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_4WSD_129 | 1/1G/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4WSD_130 | 1/1G/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_4WSD_131 | 1/1G/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_4WSD_132 | 1/1G/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_4WSD_133 | 1/1G/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4WSD_134 | 1/1G/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4WSD_135 | 1/1G/1449:1454 | Mini UNCG | geometric HL_5T16_002 HL_56334.1 | |
| HL_4WSD_136 | 1/1G/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.7 | |
| HL_4WSD_137 | 1/1H/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4WSD_138 | 1/1H/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_4WSD_139 | 1/1H/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_4WSD_140 | 1/1H/137A:141A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4WSD_141 | 1/1H/155:171 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_4WSD_142 | 1/1H/194:201 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_4WSD_143 | 1/1H/225:230 | No text annotation | homologous HL_7A0S_007 HL_53890.2 | |
| HL_4WSD_144 | 1/1H/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4WSD_145 | 1/1H/270J:270P | No text annotation | geometric HL_5TBW_012 NA | |
| HL_4WSD_146 | 1/1H/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4WSD_147 | 1/1H/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_4WSD_148 | 1/1H/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_4WSD_238 | 1/1H/383:391 | No text annotation | ||
| HL_4WSD_150 | 1/1H/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4WSD_151 | 1/1H/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4WSD_152 | 1/1H/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_4WSD_153 | 1/1H/544:549 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_4WSD_154 | 1/1H/566:575 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_4WSD_155 | 1/1H/611:617 | No text annotation | homologous HL_7A0S_019 HL_47787.2 | |
| HL_4WSD_156 | 1/1H/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4WSD_157 | 1/1H/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4WSD_158 | 1/1H/654C:654R | No text annotation | geometric HL_5TBW_226 NA | |
| HL_4WSD_159 | 1/1H/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4WSD_160 | 1/1H/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4WSD_161 | 1/1H/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4WSD_162 | 1/1H/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_4WSD_163 | 1/1H/883:893 | No text annotation | ||
| HL_4WSD_164 | 1/1H/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4WSD_165 | 1/1H/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4WSD_166 | 1/1H/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_4WSD_167 | 1/1H/1091:1100 | No text annotation | ||
| HL_4WSD_247 | 1/1H/1171:1178 | No text annotation | ||
| HL_4WSD_169 | 1/1H/1223:1228 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4WSD_170 | 1/1H/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4WSD_171 | 1/1H/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4WSD_172 | 1/1H/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4WSD_173 | 1/1H/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4WSD_174 | 1/1H/1451:1459 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_4WSD_175 | 1/1H/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_4WSD_176 | 1/1H/1533:1538 | No text annotation | ||
| HL_4WSD_177 | 1/1H/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4WSD_178 | 1/1H/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4WSD_179 | 1/1H/1630A:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4WSD_180 | 1/1H/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_4WSD_181 | 1/1H/1727:1733 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_4WSD_182 | 1/1H/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4WSD_183 | 1/1H/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_4WSD_184 | 1/1H/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4WSD_185 | 1/1H/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4WSD_186 | 1/1H/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4WSD_187 | 1/1H/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4WSD_188 | 1/1H/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4WSD_189 | 1/1H/2143:2148 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_4WSD_190 | 1/1H/2209:2215 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_4WSD_191 | 1/1H/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4WSD_192 | 1/1H/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4WSD_248 | 1/1H/2304:2312 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_4WSD_194 | 1/1H/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4WSD_195 | 1/1H/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4WSD_196 | 1/1H/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4WSD_197 | 1/1H/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4WSD_198 | 1/1H/2471:2479 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_4WSD_199 | 1/1H/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4WSD_200 | 1/1H/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4WSD_201 | 1/1H/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4WSD_202 | 1/1H/2658:2663 | GNRA | homologous HL_7RQB_064 NA | |
| HL_4WSD_203 | 1/1H/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4WSD_204 | 1/1H/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4WSD_205 | 1/1H/2793:2803 | Other HL | homologous HL_5J7L_200 HL_08100.1 | |
| HL_4WSD_206 | 1/1H/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4WSD_207 | 1/1H/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4WSD_241 | 1/1J/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_4WSD_208 | 1/1J/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_4WSD_209 | 1/1J/86:90 | No text annotation | geometric HL_8G9Z_001 HL_75660.5 | |
| HL_4WSD_210 | 1/1K/10:25 | No text annotation | ||
| HL_4WSD_242 | 1/1K/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_4WSD_212 | 1/1K/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5E81_207 HL_28252.6 | |
| HL_4WSD_243 | 1/1L/13:22 | No text annotation | homologous HL_5J8B_105 NA | |
| HL_4WSD_249 | 1/1L/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_4WSD_215 | 1/1L/53:61 | T-loop with 2 stacked bulged bases | homologous HL_7K98_003 HL_28252.6 | |
| HL_4WSD_216 | 1/2K/13:23 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
| HL_4WSD_217 | 1/2K/32:40 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.5 | |
| HL_4WSD_218 | 1/2K/54:62 | T-loop with 2 stacked bulged bases | homologous HL_5E81_213 HL_28252.6 | |
| HL_4WSD_219 | 1/2L/13:23 | tRNA D-loop | homologous HL_4TUE_033 HL_93616.2 | |
| HL_4WSD_220 | 1/2L/32:40 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.5 | |
| HL_4WSD_221 | 1/2L/54:62 | T-loop with 2 stacked bulged bases | homologous HL_5E81_213 HL_28252.6 | |
| HL_4WSD_244 | 1/3K/13:22 | No text annotation | homologous HL_5E81_219 NA | |
| HL_4WSD_224 | 1/3K/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5AXM_003 HL_28252.6 | |
| HL_4WSD_225 | 1/3L/13:22 | No text annotation | homologous HL_5E81_219 NA | |
| HL_4WSD_226 | 1/3L/31:39 | No text annotation | homologous HL_6PMO_004 NA | |
| HL_4WSD_227 | 1/3L/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1U0B_003 HL_28252.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4WSD_002 | No text annotation | ||
| HL_4WSD_228 | No text annotation | ||
| HL_4WSD_004 | No text annotation | ||
| HL_4WSD_229 | No text annotation | ||
| HL_4WSD_036 | No text annotation | ||
| HL_4WSD_044 | No text annotation | ||
| HL_4WSD_058 | No text annotation | ||
| HL_4WSD_231 | No text annotation | ||
| HL_4WSD_063 | No text annotation | ||
| HL_4WSD_232 | No text annotation | ||
| HL_4WSD_106 | No text annotation | ||
| HL_4WSD_108 | No text annotation | ||
| HL_4WSD_235 | No text annotation | ||
| HL_4WSD_236 | No text annotation | ||
| HL_4WSD_125 | No text annotation | ||
| HL_4WSD_237 | No text annotation | ||
| HL_4WSD_149 | No text annotation | ||
| HL_4WSD_239 | No text annotation | ||
| HL_4WSD_168 | No text annotation | ||
| HL_4WSD_193 | No text annotation | ||
| HL_4WSD_240 | No text annotation | ||
| HL_4WSD_211 | No text annotation | ||
| HL_4WSD_213 | No text annotation | ||
| HL_4WSD_214 | No text annotation | ||
| HL_4WSD_222 | No text annotation | ||
| HL_4WSD_223 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4WSD_001 | 1/13/30:32, 1/13/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_4WSD_002 | 1/13/44:45, 1/13/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.5 | |
| IL_4WSD_003 | 1/13/47:52, 1/13/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_4WSD_004 | 1/13/54:56, 1/13/356:357 | Minor groove platform | homologous IL_5J7L_004 IL_51454.2 | |
| IL_4WSD_005 | 1/13/63:66, 1/13/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_4WSD_006 | 1/13/67:69, 1/13/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_4WSD_007 | 1/13/129:131, 1/13/231:232 | Multiple bulged bases | homologous IL_6CZR_119 NA | |
| IL_4WSD_008 | 1/13/132:136, 1/13/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4WSD_009 | 1/13/148:154, 1/13/167:174 | tWH-tWH-tHW-tHW | homologous IL_6CZR_121 NA | |
| IL_4WSD_376 | 1/13/186:186, 1/13/191:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4WSD_013 | 1/13/242:247, 1/13/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4WSD_014 | 1/13/249:252, 1/13/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4WSD_015 | 1/13/292:293, 1/13/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4WSD_016 | 1/13/367:369, 1/13/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_4WSD_017 | 1/13/371:375, 1/13/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_4WSD_018 | 1/13/375:376, 1/13/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_4WSD_377 | 1/13/409:416, 1/13/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4WSD_020 | 1/13/446:450, 1/13/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_6CZR_130 NA | |
| IL_4WSD_021 | 1/13/450:456, 1/13/476:483 | No text annotation | homologous IL_6CZR_131 NA | |
| IL_4WSD_022 | 1/13/504:511, 1/13/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_4WSD_023 | 1/13/515:521, 1/13/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4WSD_024 | 1/13/569:575, 1/13/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_4WSD_025 | 1/13/580:584, 1/13/757:761 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
| IL_4WSD_026 | 1/13/594:596, 1/13/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4WSD_409 | 1/13/597:598, 1/13/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_4WSD_029 | 1/13/605:612, 1/13/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_4WSD_030 | 1/13/654:655, 1/13/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_4WSD_031 | 1/13/657:658, 1/13/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4WSD_032 | 1/13/662:666, 1/13/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_4WSD_378 | 1/13/673:677, 1/13/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_4WSD_034 | 1/13/683:688, 1/13/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4WSD_035 | 1/13/774:778, 1/13/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_4WSD_036 | 1/13/779:783, 1/13/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_4WSD_037 | 1/13/887:894, 1/13/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_4WSD_038 | 1/13/922:923, 1/13/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_4WSD_039 | 1/13/925:927, 1/13/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_4WSD_040 | 1/13/933:935, 1/13/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4WSD_041 | 1/13/953:954, 1/13/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.2 | |
| IL_4WSD_042 | 1/13/993:997, 1/13/1044:1045 | Minor groove platform | geometric IL_6CZR_151 NA | |
| IL_4WSD_410 | 1/13/1003:1006, 1/13/1023:1037 | No text annotation | ||
| IL_4WSD_046 | 1/13/1048:1050, 1/13/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_4WSD_047 | 1/13/1052:1056, 1/13/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4WSD_048 | 1/13/1057:1058, 1/13/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_4WSD_049 | 1/13/1060:1061, 1/13/1195:1197 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_4WSD_050 | 1/13/1061:1063, 1/13/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_4WSD_051 | 1/13/1124:1132, 1/13/1142:1149 | No text annotation | ||
| IL_4WSD_053 | 1/13/1247:1253, 1/13/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4WSD_054 | 1/13/1255:1258, 1/13/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4WSD_055 | 1/13/1259:1262, 1/13/1273:1276 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_4WSD_056 | 1/13/1303:1308, 1/13/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_85536.2 | |
| IL_4WSD_057 | 1/13/1399:1401, 1/13/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_4WSD_058 | 1/13/1401:1404, 1/13/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4WSD_059 | 1/13/1405:1407, 1/13/1494:1496 | Isolated non-canonical cWW pair | geometric IL_3GM7_005 IL_87907.2 | |
| IL_4WSD_060 | 1/13/1407:1409, 1/13/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4WSD_061 | 1/13/1412:1414, 1/13/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4WSD_062 | 1/13/1416:1419, 1/13/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4WSD_063 | 1/13/1431:1435, 1/13/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_4WSD_064 | 1/13/1435:1437, 1/13/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_87907.2 | |
| IL_4WSD_065 | 1/13/1440:1447, 1/13/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_4WSD_066 | 1/14/24:30, 1/14/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4WSD_067 | 1/14/36:37, 1/14/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4WSD_411 | 1/14/43:44, 1/14/434:436 | Minor groove platform | homologous IL_9DFE_348 IL_51454.2 | |
| IL_4WSD_069 | 1/14/81:85, 1/14/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4WSD_070 | 1/14/183:184, 1/14/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4WSD_071 | 1/14/188:194, 1/14/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_4WSD_072 | 1/14/239:245, 1/14/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4WSD_073 | 1/14/270J:270K, 1/14/270N:270P | Single bulged U | homologous IL_7RQB_008 NA | |
| IL_4WSD_075 | 1/14/273:273A, 1/14/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4WSD_076 | 1/14/273D:279, 1/14/361:363B | No text annotation | ||
| IL_4WSD_412 | 1/14/273E:284, 1/14/357:363A | No text annotation | ||
| IL_4WSD_077 | 1/14/280:284, 1/14/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4WSD_078 | 1/14/288:290, 1/14/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4WSD_079 | 1/14/293:295, 1/14/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4WSD_080 | 1/14/481:484, 1/14/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4WSD_081 | 1/14/564:566, 1/14/575:577 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_4WSD_082 | 1/14/606:609A, 1/14/618A:622 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_4WSD_083 | 1/14/672:674, 1/14/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4WSD_084 | 1/14/674:678, 1/14/799:806 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_54041.2 | |
| IL_4WSD_085 | 1/14/697:698, 1/14/763:765 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_4WSD_086 | 1/14/702:703, 1/14/728:730 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_4WSD_087 | 1/14/703:707, 1/14/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_4WSD_088 | 1/14/738:741, 1/14/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4WSD_089 | 1/14/775:777, 1/14/787:791 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_4WSD_090 | 1/14/837:838, 1/14/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_4WSD_091 | 1/14/844:846, 1/14/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4WSD_381 | 1/14/844:850, 1/14/928:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_4WSD_092 | 1/14/846:850, 1/14/928:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_4WSD_093 | 1/14/858:862, 1/14/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7RQB_027 NA | |
| IL_4WSD_094 | 1/14/862:863, 1/14/913:915 | Minor groove platform | geometric IL_4WF9_032 IL_51454.2 | |
| IL_4WSD_095 | 1/14/864:868, 1/14/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4WSD_097 | 1/14/875:879, 1/14/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_4WSD_098 | 1/14/952:954, 1/14/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4WSD_099 | 1/14/994:996, 1/14/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_4WSD_100 | 1/14/998:1002, 1/14/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4WSD_102 | 1/14/1004:1011, 1/14/1150:1151 | No text annotation | geometric IL_8VTW_036 NA | |
| IL_4WSD_413 | 1/14/1004:1013, 1/14/1149:1151 | No text annotation | ||
| IL_4WSD_103 | 1/14/1011:1013, 1/14/1149:1150 | Single bulged U | geometric IL_8VTW_037 NA | |
| IL_4WSD_104 | 1/14/1018:1024, 1/14/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_4WSD_105 | 1/14/1024:1030, 1/14/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4WSD_106 | 1/14/1031:1034, 1/14/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4WSD_414 | 1/14/1040:1052, 1/14/1107:1115 | No text annotation | ||
| IL_4WSD_415 | 1/14/1055:1058, 1/14/1080:1104 | No text annotation | ||
| IL_4WSD_108 | 1/14/1196:1198, 1/14/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4WSD_109 | 1/14/1202:1206, 1/14/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4WSD_110 | 1/14/1208:1215, 1/14/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4WSD_111 | 1/14/1219:1221, 1/14/1229A:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4WSD_112 | 1/14/1262:1269, 1/14/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4WSD_113 | 1/14/1310:1313, 1/14/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4WSD_386 | 1/14/1319:1323, 1/14/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_4WSD_115 | 1/14/1351:1355, 1/14/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4WSD_116 | 1/14/1357:1361, 1/14/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4WSD_117 | 1/14/1415:1416, 1/14/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4WSD_118 | 1/14/1417:1421, 1/14/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_4WSD_119 | 1/14/1433:1435, 1/14/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4WSD_120 | 1/14/1437:1440, 1/14/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4WSD_121 | 1/14/1448:1449A, 1/14/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4WSD_122 | 1/14/1450:1451, 1/14/1459:1461 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_4WSD_123 | 1/14/1469:1473, 1/14/1520:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_4WSD_124 | 1/14/1482:1483, 1/14/1506:1512 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_4WSD_125 | 1/14/1489:1491, 1/14/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4WSD_126 | 1/14/1526:1530, 1/14/1541:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_4WSD_127 | 1/14/1651:1656, 1/14/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4WSD_387 | 1/14/1663:1665, 1/14/1995:1997 | Isolated tWW turn | homologous IL_7A0S_060 IL_67095.2 | |
| IL_4WSD_388 | 1/14/1666:1669, 1/14/1993:1994 | Major groove platform; stack outside cWW | geometric IL_4V9F_061 IL_50694.7 | |
| IL_4WSD_389 | 1/14/1666:1674, 1/14/1990:1994 | No text annotation | geometric IL_8VTW_350 NA | |
| IL_4WSD_390 | 1/14/1669:1674, 1/14/1990:1993 | No text annotation | homologous IL_9DFE_067 IL_76758.2 | |
| IL_4WSD_128 | 1/14/1686:1691, 1/14/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_4WSD_129 | 1/14/1770:1771, 1/14/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4WSD_130 | 1/14/1798:1804, 1/14/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4WSD_131 | 1/14/1837:1840, 1/14/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_4WSD_132 | 1/14/1841:1842, 1/14/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_4WSD_133 | 1/14/1846:1849, 1/14/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4WSD_134 | 1/14/1851:1855, 1/14/1887:1891 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_4WSD_135 | 1/14/1856:1860, 1/14/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4WSD_136 | 1/14/1933:1934, 1/14/1964:1967 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_4WSD_137 | 1/14/1934:1945, 1/14/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_4WSD_138 | 1/14/2050:2052, 1/14/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4WSD_139 | 1/14/2054:2057, 1/14/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_4WSD_140 | 1/14/2067:2069, 1/14/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4WSD_141 | 1/14/2070:2071, 1/14/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4WSD_142 | 1/14/2081:2083, 1/14/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4WSD_143 | 1/14/2085:2087, 1/14/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4WSD_416 | 1/14/2108:2110, 1/14/2179:2181 | No text annotation | homologous IL_9DFE_084 NA | |
| IL_4WSD_145 | 1/14/2110:2121, 1/14/2177:2179 | Isolated non-canonical cWW contact | geometric IL_7Y2B_002 NA | |
| IL_4WSD_391 | 1/14/2110:2127, 1/14/2161:2179 | No text annotation | ||
| IL_4WSD_146 | 1/14/2121:2127, 1/14/2161:2177 | No text annotation | ||
| IL_4WSD_147 | 1/14/2127:2137, 1/14/2155:2161 | No text annotation | ||
| IL_4WSD_417 | 1/14/2137:2139, 1/14/2152:2155 | No text annotation | ||
| IL_4WSD_149 | 1/14/2297:2299, 1/14/2317:2321 | Isolated tHS basepair with bulges | homologous IL_4WF9_086 IL_61476.2 | |
| IL_4WSD_150 | 1/14/2350:2353, 1/14/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4WSD_151 | 1/14/2401:2403, 1/14/2414:2415 | Minor groove platform related | geometric IL_7TZS_003 IL_51454.2 | |
| IL_4WSD_152 | 1/14/2453:2454, 1/14/2498:2500 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_4WSD_153 | 1/14/2454:2455, 1/14/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4WSD_392 | 1/14/2457:2459, 1/14/2493:2494 | Major groove platform | homologous IL_9DFE_093 IL_48076.6 | |
| IL_4WSD_155 | 1/14/2459:2461, 1/14/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_4WSD_156 | 1/14/2466:2470, 1/14/2480:2484 | Triple sheared | homologous IL_4WF9_093 IL_17948.2 | |
| IL_4WSD_157 | 1/14/2507:2508, 1/14/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4WSD_158 | 1/14/2510:2512, 1/14/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4WSD_159 | 1/14/2512:2513, 1/14/2571:2574 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_4WSD_160 | 1/14/2522:2523, 1/14/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_4WSD_162 | 1/14/2591:2592, 1/14/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.5 | |
| IL_4WSD_163 | 1/14/2636:2640, 1/14/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4WSD_164 | 1/14/2652:2658, 1/14/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_4WSD_165 | 1/14/2680:2684, 1/14/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4WSD_166 | 1/14/2687:2691, 1/14/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4WSD_167 | 1/14/2695:2696, 1/14/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_4WSD_168 | 1/14/2737:2742, 1/14/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_4WSD_169 | 1/14/2788:2811, 1/14/2889:2894 | No text annotation | ||
| IL_4WSD_170 | 1/14/2838:2839, 1/14/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4WSD_171 | 1/14/2843:2846, 1/14/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4WSD_172 | 1/14/2847:2852, 1/14/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4WSD_174 | 1/16/17:18, 1/16/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.5 | |
| IL_4WSD_175 | 1/16/23:28, 1/16/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4WSD_176 | 1/16/30:31, 1/16/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_68140.4 | |
| IL_4WSD_177 | 1/16/34:38, 1/16/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_4WSD_178 | 1/16/71:79, 1/16/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4WSD_180 | 1/1G/30:32, 1/1G/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_4WSD_181 | 1/1G/44:45, 1/1G/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.5 | |
| IL_4WSD_182 | 1/1G/47:52, 1/1G/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_4WSD_183 | 1/1G/54:56, 1/1G/356:357 | Minor groove platform | homologous IL_5J7L_004 IL_51454.2 | |
| IL_4WSD_184 | 1/1G/63:66, 1/1G/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_4WSD_185 | 1/1G/67:69, 1/1G/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_4WSD_186 | 1/1G/129:131, 1/1G/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_4WSD_187 | 1/1G/132:136, 1/1G/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4WSD_188 | 1/1G/148:153, 1/1G/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4WSD_393 | 1/1G/186:186, 1/1G/191:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4WSD_190 | 1/1G/242:247, 1/1G/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4WSD_191 | 1/1G/249:252, 1/1G/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_4WSD_192 | 1/1G/292:293, 1/1G/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4WSD_193 | 1/1G/367:369, 1/1G/392:393 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_4WSD_194 | 1/1G/371:375, 1/1G/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_4WSD_195 | 1/1G/375:376, 1/1G/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
| IL_4WSD_196 | 1/1G/409:416, 1/1G/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4WSD_197 | 1/1G/446:450, 1/1G/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_6CZR_130 NA | |
| IL_4WSD_198 | 1/1G/450:455, 1/1G/477:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_4WSD_199 | 1/1G/504:511, 1/1G/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_4WSD_200 | 1/1G/515:521, 1/1G/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4WSD_201 | 1/1G/569:575, 1/1G/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_4WSD_202 | 1/1G/580:584, 1/1G/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_4WSD_204 | 1/1G/594:596, 1/1G/644:645 | Major groove platform | geometric IL_4LFB_024 IL_48076.6 | |
| IL_4WSD_418 | 1/1G/597:598, 1/1G/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_4WSD_206 | 1/1G/605:612, 1/1G/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_4WSD_207 | 1/1G/654:655, 1/1G/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_4WSD_208 | 1/1G/657:658, 1/1G/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4WSD_209 | 1/1G/662:666, 1/1G/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_4WSD_394 | 1/1G/673:677, 1/1G/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_4WSD_211 | 1/1G/683:688, 1/1G/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4WSD_212 | 1/1G/774:778, 1/1G/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_4WSD_213 | 1/1G/779:783, 1/1G/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_4WSD_215 | 1/1G/887:894, 1/1G/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_4WSD_216 | 1/1G/922:923, 1/1G/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_4WSD_217 | 1/1G/925:927, 1/1G/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_4WSD_218 | 1/1G/933:935, 1/1G/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4WSD_219 | 1/1G/953:954, 1/1G/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.2 | |
| IL_4WSD_222 | 1/1G/993:998A, 1/1G/1042:1045 | No text annotation | ||
| IL_4WSD_395 | 1/1G/1048:1050, 1/1G/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_4WSD_226 | 1/1G/1052:1056, 1/1G/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4WSD_227 | 1/1G/1057:1058, 1/1G/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_4WSD_232 | 1/1G/1123:1128, 1/1G/1143:1150 | No text annotation | ||
| IL_4WSD_398 | 1/1G/1124:1132, 1/1G/1142:1149 | No text annotation | ||
| IL_4WSD_233 | 1/1G/1128:1132, 1/1G/1142:1143 | Minor groove platform | geometric IL_4LFB_049 IL_15052.4 | |
| IL_4WSD_236 | 1/1G/1247:1253, 1/1G/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4WSD_237 | 1/1G/1255:1258, 1/1G/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4WSD_399 | 1/1G/1258:1262, 1/1G/1273:1277 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_4WSD_238 | 1/1G/1259:1262, 1/1G/1273:1276 | Double sheared | homologous IL_4LFB_067 IL_09705.15 | |
| IL_4WSD_239 | 1/1G/1303:1308, 1/1G/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_85536.2 | |
| IL_4WSD_240 | 1/1G/1399:1401, 1/1G/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_4WSD_241 | 1/1G/1401:1404, 1/1G/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4WSD_242 | 1/1G/1405:1407, 1/1G/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_87907.2 | |
| IL_4WSD_243 | 1/1G/1407:1409, 1/1G/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4WSD_244 | 1/1G/1412:1414, 1/1G/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4WSD_245 | 1/1G/1416:1419, 1/1G/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4WSD_246 | 1/1G/1431:1435, 1/1G/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_4WSD_247 | 1/1G/1435:1437, 1/1G/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_4WSD_248 | 1/1G/1440:1447, 1/1G/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_4WSD_250 | 1/1H/24:30, 1/1H/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4WSD_251 | 1/1H/36:37, 1/1H/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4WSD_419 | 1/1H/43:44, 1/1H/434:436 | Minor groove platform | homologous IL_9DFE_348 IL_51454.2 | |
| IL_4WSD_253 | 1/1H/81:85, 1/1H/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4WSD_254 | 1/1H/183:184, 1/1H/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4WSD_255 | 1/1H/188:194, 1/1H/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_4WSD_256 | 1/1H/239:245, 1/1H/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4WSD_259 | 1/1H/273:273A, 1/1H/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4WSD_260 | 1/1H/273F:280, 1/1H/360:363 | No text annotation | ||
| IL_4WSD_261 | 1/1H/280:284, 1/1H/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4WSD_262 | 1/1H/288:290, 1/1H/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4WSD_263 | 1/1H/293:295, 1/1H/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4WSD_264 | 1/1H/481:484, 1/1H/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4WSD_265 | 1/1H/564:566, 1/1H/575:577 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_4WSD_266 | 1/1H/606:609A, 1/1H/618A:622 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_4WSD_267 | 1/1H/672:674, 1/1H/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4WSD_268 | 1/1H/674:678, 1/1H/799:806 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_54041.2 | |
| IL_4WSD_269 | 1/1H/697:698, 1/1H/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_4WSD_270 | 1/1H/702:703, 1/1H/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_4WSD_271 | 1/1H/703:707, 1/1H/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_4WSD_272 | 1/1H/738:741, 1/1H/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4WSD_273 | 1/1H/775:777, 1/1H/787:791 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_4WSD_274 | 1/1H/837:838, 1/1H/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_4WSD_275 | 1/1H/844:846, 1/1H/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4WSD_400 | 1/1H/844:850, 1/1H/928:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_4WSD_276 | 1/1H/846:850, 1/1H/928:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_4WSD_401 | 1/1H/858:862, 1/1H/915:919 | No text annotation | homologous IL_7A0S_111 IL_38862.4 | |
| IL_4WSD_278 | 1/1H/862:863, 1/1H/913:915 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_4WSD_279 | 1/1H/864:868, 1/1H/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4WSD_280 | 1/1H/870:872, 1/1H/905:907 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
| IL_4WSD_281 | 1/1H/875:879, 1/1H/898:902 | Triple sheared | geometric IL_5J7L_274 IL_17948.2 | |
| IL_4WSD_402 | 1/1H/875:883, 1/1H/893:902 | No text annotation | ||
| IL_4WSD_282 | 1/1H/879:883, 1/1H/893:898 | No text annotation | ||
| IL_4WSD_283 | 1/1H/952:954, 1/1H/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4WSD_284 | 1/1H/994:996, 1/1H/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_4WSD_285 | 1/1H/998:1002, 1/1H/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4WSD_286 | 1/1H/1004:1011, 1/1H/1150:1151 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_4WSD_287 | 1/1H/1011:1013, 1/1H/1149:1150 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_4WSD_288 | 1/1H/1018:1024, 1/1H/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_4WSD_289 | 1/1H/1024:1030, 1/1H/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4WSD_290 | 1/1H/1031:1034, 1/1H/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4WSD_291 | 1/1H/1043:1051, 1/1H/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_4WSD_403 | 1/1H/1043:1053, 1/1H/1106:1112 | No text annotation | ||
| IL_4WSD_404 | 1/1H/1055:1091, 1/1H/1100:1104 | No text annotation | ||
| IL_4WSD_294 | 1/1H/1087:1091, 1/1H/1100:1102 | Isolated non-canonical cWW pair | geometric IL_5B2P_002 IL_07785.1 | |
| IL_4WSD_295 | 1/1H/1196:1198, 1/1H/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4WSD_296 | 1/1H/1202:1206, 1/1H/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4WSD_297 | 1/1H/1208:1215, 1/1H/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4WSD_298 | 1/1H/1219:1221, 1/1H/1229A:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4WSD_299 | 1/1H/1262:1269, 1/1H/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4WSD_300 | 1/1H/1310:1313, 1/1H/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4WSD_301 | 1/1H/1319:1323, 1/1H/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4WSD_302 | 1/1H/1351:1355, 1/1H/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4WSD_303 | 1/1H/1357:1361, 1/1H/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4WSD_304 | 1/1H/1415:1416, 1/1H/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4WSD_305 | 1/1H/1417:1421, 1/1H/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_4WSD_306 | 1/1H/1433:1435, 1/1H/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4WSD_307 | 1/1H/1437:1440, 1/1H/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4WSD_308 | 1/1H/1448:1449A, 1/1H/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4WSD_309 | 1/1H/1450:1451, 1/1H/1459:1461 | Single bulged A | homologous IL_7RQB_059 NA | |
| IL_4WSD_310 | 1/1H/1469:1473, 1/1H/1520:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_4WSD_311 | 1/1H/1482:1483, 1/1H/1506:1512 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_4WSD_312 | 1/1H/1489:1491, 1/1H/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4WSD_313 | 1/1H/1526:1530, 1/1H/1541:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_4WSD_314 | 1/1H/1651:1656, 1/1H/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4WSD_315 | 1/1H/1663:1665, 1/1H/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_4WSD_316 | 1/1H/1666:1669, 1/1H/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_4WSD_405 | 1/1H/1666:1674, 1/1H/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_4WSD_317 | 1/1H/1669:1674, 1/1H/1990:1993 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_4WSD_318 | 1/1H/1686:1691, 1/1H/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_4WSD_319 | 1/1H/1770:1771, 1/1H/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4WSD_320 | 1/1H/1798:1804, 1/1H/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4WSD_321 | 1/1H/1837:1840, 1/1H/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_4WSD_322 | 1/1H/1841:1842, 1/1H/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_4WSD_323 | 1/1H/1846:1849, 1/1H/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4WSD_324 | 1/1H/1851:1855, 1/1H/1887:1891 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_4WSD_325 | 1/1H/1856:1860, 1/1H/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4WSD_326 | 1/1H/1933:1934, 1/1H/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_4WSD_327 | 1/1H/1934:1945, 1/1H/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_4WSD_328 | 1/1H/2050:2052, 1/1H/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4WSD_329 | 1/1H/2054:2057, 1/1H/2611:2615 | No text annotation | homologous IL_7RQB_079 NA | |
| IL_4WSD_330 | 1/1H/2067:2069, 1/1H/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4WSD_331 | 1/1H/2070:2071, 1/1H/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4WSD_332 | 1/1H/2081:2083, 1/1H/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4WSD_333 | 1/1H/2085:2087, 1/1H/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4WSD_334 | 1/1H/2108:2110, 1/1H/2179:2181 | Isolated non-canonical cWW pair | geometric IL_5D0B_001 IL_87907.2 | |
| IL_4WSD_335 | 1/1H/2110:2120, 1/1H/2178:2179 | Multiple bulged bases | geometric IL_1KXK_003 IL_42626.2 | |
| IL_4WSD_420 | 1/1H/2121:2128, 1/1H/2160:2177 | No text annotation | ||
| IL_4WSD_337 | 1/1H/2124:2129, 1/1H/2159:2174 | No text annotation | ||
| IL_4WSD_338 | 1/1H/2129:2136, 1/1H/2155:2159 | Kink-turn | homologous IL_5J7L_330 IL_70923.9 | |
| IL_4WSD_341 | 1/1H/2297:2299, 1/1H/2317:2321 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_4WSD_342 | 1/1H/2350:2353, 1/1H/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4WSD_343 | 1/1H/2401:2403, 1/1H/2414:2415 | Minor groove platform related | geometric IL_7TZS_003 IL_51454.2 | |
| IL_4WSD_344 | 1/1H/2453:2454, 1/1H/2498:2500 | Single stack bend | homologous IL_7RQB_091 NA | |
| IL_4WSD_407 | 1/1H/2457:2459, 1/1H/2493:2494 | Major groove platform | homologous IL_9DFE_093 IL_48076.6 | |
| IL_4WSD_347 | 1/1H/2459:2461, 1/1H/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_4WSD_348 | 1/1H/2466:2470, 1/1H/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_4WSD_349 | 1/1H/2507:2508, 1/1H/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4WSD_350 | 1/1H/2510:2512, 1/1H/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4WSD_351 | 1/1H/2512:2513, 1/1H/2571:2574 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_4WSD_352 | 1/1H/2522:2523, 1/1H/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_4WSD_353 | 1/1H/2591:2592, 1/1H/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4WSD_354 | 1/1H/2636:2640, 1/1H/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4WSD_355 | 1/1H/2652:2658, 1/1H/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_4WSD_356 | 1/1H/2680:2684, 1/1H/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4WSD_357 | 1/1H/2687:2691, 1/1H/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4WSD_358 | 1/1H/2695:2696, 1/1H/2711:2714 | Multiple bulged bases | homologous IL_7A0S_097 IL_42626.2 | |
| IL_4WSD_359 | 1/1H/2737:2742, 1/1H/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4WSD_360 | 1/1H/2791:2792, 1/1H/2804:2807 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_4WSD_361 | 1/1H/2838:2839, 1/1H/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4WSD_362 | 1/1H/2843:2846, 1/1H/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4WSD_363 | 1/1H/2847:2852, 1/1H/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4WSD_408 | 1/1J/17:18, 1/1J/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_31462.5 | |
| IL_4WSD_365 | 1/1J/23:28, 1/1J/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4WSD_421 | 1/1J/30:31, 1/1J/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_68140.4 | |
| IL_4WSD_367 | 1/1J/34:38, 1/1J/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4WSD_368 | 1/1J/71:79, 1/1J/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4WSD_010 | Isolated non-canonical cWW pair | ||
| IL_4WSD_011 | No text annotation | ||
| IL_4WSD_012 | No text annotation | ||
| IL_4WSD_019 | No text annotation | ||
| IL_4WSD_027 | 8-nt loop receptor | ||
| IL_4WSD_028 | No text annotation | ||
| IL_4WSD_033 | No text annotation | ||
| IL_4WSD_043 | No text annotation | ||
| IL_4WSD_044 | No text annotation | ||
| IL_4WSD_045 | Isolated non-canonical cWW pair | ||
| IL_4WSD_379 | No text annotation | ||
| IL_4WSD_052 | Isolated non-canonical cWW pair | ||
| IL_4WSD_068 | Major groove platform with extra cWW | ||
| IL_4WSD_074 | No text annotation | ||
| IL_4WSD_380 | No text annotation | ||
| IL_4WSD_096 | Isolated cWS basepair | ||
| IL_4WSD_382 | No text annotation | ||
| IL_4WSD_101 | Isolated non-canonical cWW pair | ||
| IL_4WSD_383 | No text annotation | ||
| IL_4WSD_384 | No text annotation | ||
| IL_4WSD_107 | Isolated non-canonical cWW pair | ||
| IL_4WSD_385 | No text annotation | ||
| IL_4WSD_114 | C-loop with extra cWW pair | ||
| IL_4WSD_144 | Triple non-canonical cWW pairs | ||
| IL_4WSD_148 | No text annotation | ||
| IL_4WSD_154 | Major groove platform with extra pair | ||
| IL_4WSD_161 | Isolated non-canonical cWW pair | ||
| IL_4WSD_173 | Isolated non-canonical cWW pair | ||
| IL_4WSD_179 | Isolated non-canonical cWW pair | ||
| IL_4WSD_189 | No text annotation | ||
| IL_4WSD_203 | Isolated non-canonical cWW pair | ||
| IL_4WSD_205 | Major groove minor groove platform with extra cWW | ||
| IL_4WSD_210 | No text annotation | ||
| IL_4WSD_214 | Isolated non-canonical cWW pair | ||
| IL_4WSD_220 | Isolated non-canonical cWW pair | ||
| IL_4WSD_221 | No text annotation | ||
| IL_4WSD_223 | Isolated non-canonical cWW pair | ||
| IL_4WSD_224 | No text annotation | ||
| IL_4WSD_225 | Isolated cWS basepair | ||
| IL_4WSD_396 | No text annotation | ||
| IL_4WSD_397 | No text annotation | ||
| IL_4WSD_228 | Single bulged U | ||
| IL_4WSD_229 | Isolated non-canonical cWW pair | ||
| IL_4WSD_230 | Isolated non-canonical cWW pair | ||
| IL_4WSD_231 | No text annotation | ||
| IL_4WSD_234 | Isolated non-canonical cWW pair | ||
| IL_4WSD_235 | Isolated non-canonical cWW pair | ||
| IL_4WSD_249 | Tandem non-canonical cWW pairs | ||
| IL_4WSD_252 | Major groove platform with extra cWW | ||
| IL_4WSD_257 | No text annotation | ||
| IL_4WSD_258 | No text annotation | ||
| IL_4WSD_277 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4WSD_292 | Isolated cWH basepair | ||
| IL_4WSD_293 | Isolated non-canonical cWW pair | ||
| IL_4WSD_336 | No text annotation | ||
| IL_4WSD_406 | No text annotation | ||
| IL_4WSD_339 | Isolated near basepair | ||
| IL_4WSD_340 | Tandem non-canonical cWW pairs with near WC pairs | ||
| IL_4WSD_345 | Major groove platform | ||
| IL_4WSD_346 | Major groove platform with extra pair | ||
| IL_4WSD_364 | No text annotation | ||
| IL_4WSD_366 | No text annotation | ||
| IL_4WSD_369 | Isolated non-canonical cWW pair | ||
| IL_4WSD_370 | No text annotation | ||
| IL_4WSD_371 | Isolated non-canonical cWW pair | ||
| IL_4WSD_372 | No text annotation | ||
| IL_4WSD_373 | No text annotation | ||
| IL_4WSD_374 | Self complementary | ||
| IL_4WSD_375 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4WSD_034 | 1/13/46:47, 1/13/361:367, 1/13/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_4WSD_035 | 1/13/46:52, 1/13/359:367, 1/13/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4WSD_036 | 1/13/586:588, 1/13/651:655, 1/13/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4WSD_037 | 1/13/672:673, 1/13/717:725, 1/13/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4WSD_001 | 1/13/826:829, 1/13/857:861, 1/13/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_4WSD_002 | 1/13/936:939, 1/13/1344:1350, 1/13/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4WSD_003 | 1/13/943:946, 1/13/1235:1237, 1/13/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_4WSD_004 | 1/13/955:962, 1/13/973:984, 1/13/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4WSD_005 | 1/13/990:993, 1/13/1045:1047, 1/13/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4WSD_038 | 1/13/990:997, 1/13/1044:1047, 1/13/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4WSD_006 | 1/13/1063:1068, 1/13/1107:1113, 1/13/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4WSD_039 | 1/13/1073:1074, 1/13/1083:1086, 1/13/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_4WSD_007 | 1/13/1116:1118, 1/13/1155:1161, 1/13/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_4WSD_008 | 1/13/1237:1241, 1/13/1296:1303, 1/13/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4WSD_040 | 1/14/30:31, 1/14/474:481, 1/14/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4WSD_041 | 1/14/30:31, 1/14/474:484, 1/14/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_4WSD_042 | 1/14/32:35, 1/14/445:461, 1/14/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_4WSD_043 | 1/14/56:57, 1/14/70:76, 1/14/110:114 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_4WSD_044 | 1/14/269:270, 1/14/270:271, 1/14/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4WSD_045 | 1/14/297:301, 1/14/316:325, 1/14/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_4WSD_009 | 1/14/683:689, 1/14/773:775, 1/14/791:794 | No text annotation | homologous J3_7A0S_004 J3_64189.2 | |
| J3_4WSD_010 | 1/14/698:700, 1/14/732:736, 1/14/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4WSD_011 | 1/14/1055:1059, 1/14/1079:1091, 1/14/1100:1104 | No text annotation | ||
| J3_4WSD_012 | 1/14/1298:1303, 1/14/1625:1627, 1/14/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4WSD_013 | 1/14/1306:1309, 1/14/1605:1611, 1/14/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4WSD_046 | 1/14/1344:1350, 1/14/1381:1385, 1/14/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_4WSD_047 | 1/14/1424:1429, 1/14/1564:1565, 1/14/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_4WSD_014 | 1/14/2091:2093, 1/14/2196:2205, 1/14/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4WSD_048 | 1/14/2282:2284, 1/14/2384:2395, 1/14/2421:2427 | No text annotation | homologous J3_7A0S_020 J3_20992.1 | |
| J3_4WSD_015 | 1/14/2295:2297, 1/14/2321:2323, 1/14/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4WSD_016 | 1/14/2517:2520, 1/14/2545:2547, 1/14/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4WSD_049 | 1/14/2814:2815, 1/14/2831:2836, 1/14/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4WSD_050 | 1/16/11:16, 1/16/68:69, 1/16/107:109 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J3_4WSD_051 | 1/1G/46:47, 1/1G/361:367, 1/1G/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_4WSD_052 | 1/1G/46:52, 1/1G/359:367, 1/1G/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4WSD_053 | 1/1G/586:588, 1/1G/651:654, 1/1G/754:755 | No text annotation | geometric J3_4LFB_011 J3_56052.5 | |
| J3_4WSD_054 | 1/1G/586:588, 1/1G/651:655, 1/1G/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4WSD_055 | 1/1G/672:673, 1/1G/717:725, 1/1G/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4WSD_017 | 1/1G/826:829, 1/1G/857:861, 1/1G/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_4WSD_018 | 1/1G/936:939, 1/1G/1344:1350, 1/1G/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4WSD_019 | 1/1G/943:946, 1/1G/1235:1237, 1/1G/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_4WSD_020 | 1/1G/955:962, 1/1G/973:984, 1/1G/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4WSD_021 | 1/1G/990:993, 1/1G/1045:1047, 1/1G/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4WSD_057 | 1/1G/990:998, 1/1G/1042:1047, 1/1G/1210:1215 | No text annotation | ||
| J3_4WSD_022 | 1/1G/1003:1006, 1/1G/1023:1028, 1/1G/1033:1037 | No text annotation | ||
| J3_4WSD_023 | 1/1G/1063:1068, 1/1G/1107:1113, 1/1G/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4WSD_070 | 1/1G/1073:1074, 1/1G/1083:1086, 1/1G/1099:1102 | No text annotation | homologous J3_6CZR_079 NA | |
| J3_4WSD_024 | 1/1G/1116:1118, 1/1G/1155:1161, 1/1G/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4WSD_025 | 1/1G/1237:1241, 1/1G/1296:1303, 1/1G/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4WSD_059 | 1/1H/30:31, 1/1H/474:481, 1/1H/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4WSD_060 | 1/1H/30:31, 1/1H/474:484, 1/1H/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_4WSD_061 | 1/1H/32:35, 1/1H/445:461, 1/1H/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_4WSD_062 | 1/1H/56:57, 1/1H/70:76, 1/1H/110:114 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
| J3_4WSD_063 | 1/1H/269:270, 1/1H/270:271, 1/1H/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4WSD_064 | 1/1H/297:301, 1/1H/316:325, 1/1H/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_4WSD_026 | 1/1H/683:689, 1/1H/773:775, 1/1H/791:794 | No text annotation | homologous J3_7A0S_004 J3_64189.2 | |
| J3_4WSD_027 | 1/1H/698:700, 1/1H/732:736, 1/1H/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4WSD_028 | 1/1H/1055:1064, 1/1H/1074:1087, 1/1H/1102:1104 | No text annotation | ||
| J3_4WSD_029 | 1/1H/1298:1303, 1/1H/1625:1627, 1/1H/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4WSD_030 | 1/1H/1306:1309, 1/1H/1605:1611, 1/1H/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4WSD_065 | 1/1H/1344:1350, 1/1H/1381:1385, 1/1H/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_4WSD_066 | 1/1H/1424:1429, 1/1H/1564:1565, 1/1H/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_4WSD_031 | 1/1H/2091:2093, 1/1H/2196:2205, 1/1H/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4WSD_067 | 1/1H/2282:2284, 1/1H/2384:2395, 1/1H/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_4WSD_032 | 1/1H/2295:2297, 1/1H/2321:2323, 1/1H/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4WSD_033 | 1/1H/2517:2520, 1/1H/2545:2547, 1/1H/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4WSD_068 | 1/1H/2814:2815, 1/1H/2831:2836, 1/1H/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4WSD_071 | 1/1J/11:16, 1/1J/68:69, 1/1J/107:109 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J4_4WSD_001 | 1/13/115:122, 1/13/239:240, 1/13/286:289, 1/13/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4WSD_034 | 1/13/141:144, 1/13/178:183, 1/13/194:198, 1/13/219:222 | No text annotation | ||
| J4_4WSD_003 | 1/13/575:577, 1/13/764:769, 1/13/810:821, 1/13/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_4WSD_004 | 1/14/268:269, 1/14/370:375, 1/14/399:406, 1/14/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4WSD_005 | 1/14/297:301, 1/14/316:319, 1/14/323:325, 1/14/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_4WSD_006 | 1/14/601:604, 1/14/624:628, 1/14/635:638, 1/14/650:656 | No text annotation | ||
| J4_4WSD_007 | 1/14/1270:1276, 1/14/1294:1295, 1/14/1645:1648, 1/14/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_4WSD_008 | 1/14/1310:1314, 1/14/1338:1343, 1/14/1404:1405, 1/14/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_4WSD_009 | 1/14/1313:1314, 1/14/1338:1343, 1/14/1404:1405, 1/14/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_4WSD_010 | 1/14/1444:1445, 1/14/1466:1467, 1/14/1525:1526, 1/14/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4WSD_011 | 1/14/1772:1776, 1/14/1788:1792, 1/14/1827:1830, 1/14/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4WSD_012 | 1/14/1833:1835, 1/14/1905:1906, 1/14/1924:1933, 1/14/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4WSD_013 | 1/14/2285:2289, 1/14/2343:2347, 1/14/2370:2372, 1/14/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_4WSD_014 | 1/14/2643:2646, 1/14/2674:2676, 1/14/2731:2735, 1/14/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_4WSD_015 | 1/1G/115:122, 1/1G/239:240, 1/1G/286:289, 1/1G/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4WSD_016 | 1/1G/142:144, 1/1G/178:183, 1/1G/194:198, 1/1G/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4WSD_017 | 1/1G/575:577, 1/1G/764:769, 1/1G/810:821, 1/1G/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_4WSD_018 | 1/1H/268:269, 1/1H/370:375, 1/1H/399:406, 1/1H/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4WSD_019 | 1/1H/297:301, 1/1H/316:319, 1/1H/323:325, 1/1H/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_4WSD_020 | 1/1H/1270:1276, 1/1H/1294:1295, 1/1H/1645:1648, 1/1H/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_4WSD_021 | 1/1H/1310:1314, 1/1H/1338:1343, 1/1H/1404:1405, 1/1H/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_4WSD_022 | 1/1H/1313:1314, 1/1H/1338:1343, 1/1H/1404:1405, 1/1H/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_4WSD_023 | 1/1H/1444:1445, 1/1H/1466:1467, 1/1H/1525:1526, 1/1H/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4WSD_024 | 1/1H/1772:1776, 1/1H/1788:1792, 1/1H/1827:1830, 1/1H/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4WSD_025 | 1/1H/1833:1835, 1/1H/1905:1906, 1/1H/1924:1933, 1/1H/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4WSD_026 | 1/1H/2285:2289, 1/1H/2343:2347, 1/1H/2370:2372, 1/1H/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_4WSD_027 | 1/1H/2643:2646, 1/1H/2674:2676, 1/1H/2731:2735, 1/1H/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_4WSD_035 | 1/1K/6:10, 1/1K/25:27, 1/1K/43:51, 1/1K/63:67 | No text annotation | ||
| J4_4WSD_036 | 1/1L/7:10, 1/1L/25:27, 1/1L/43:49, 1/1L/65:66 | No text annotation | homologous J4_7LYF_001 J4_70449.27 | |
| J4_4WSD_030 | 1/2K/7:10, 1/2K/26:28, 1/2K/44:50, 1/2K/66:67 | tRNA junction | homologous J4_5E81_027 J4_70449.27 | |
| J4_4WSD_031 | 1/2L/7:10, 1/2L/26:28, 1/2L/44:50, 1/2L/66:67 | tRNA junction | homologous J4_5E81_027 J4_70449.27 | |
| J4_4WSD_032 | 1/3K/7:10, 1/3K/25:27, 1/3K/43:49, 1/3K/65:66 | No text annotation | ||
| J4_4WSD_037 | 1/3L/7:10, 1/3L/25:27, 1/3L/43:49, 1/3L/65:66 | tRNA junction | homologous J4_5E81_030 J4_58434.1 | |
| J5_4WSD_020 | 1/13/36:39, 1/13/403:406, 1/13/436:442, 1/13/492:500, 1/13/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4WSD_002 | 1/13/58:61, 1/13/106:113, 1/13/314:316, 1/13/337:339, 1/13/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_4WSD_003 | 1/14/47:54, 1/14/116:121, 1/14/130:131, 1/14/148:150, 1/14/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_4WSD_004 | 1/14/268:270, 1/14/270:271, 1/14/366:375, 1/14/399:406, 1/14/421:424 | No text annotation | ||
| J5_4WSD_005 | 1/14/531:533, 1/14/560:564, 1/14/577:579, 1/14/1261:1262, 1/14/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4WSD_006 | 1/14/584:589, 1/14/668:671, 1/14/809:812, 1/14/1195:1196, 1/14/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_4WSD_007 | 1/14/1674:1682, 1/14/1706:1707, 1/14/1751:1752, 1/14/1756:1764, 1/14/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_4WSD_021 | 1/14/2057:2064, 1/14/2446:2453, 1/14/2500:2507, 1/14/2582:2588, 1/14/2606:2611 | No text annotation | ||
| J5_4WSD_009 | 1/14/2074:2077, 1/14/2243:2246, 1/14/2258:2259, 1/14/2281:2282, 1/14/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_4WSD_022 | 1/1G/36:39, 1/1G/403:406, 1/1G/436:442, 1/1G/492:500, 1/1G/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4WSD_011 | 1/1G/58:61, 1/1G/106:113, 1/1G/314:316, 1/1G/337:339, 1/1G/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_4WSD_012 | 1/1H/47:54, 1/1H/116:121, 1/1H/130:131, 1/1H/148:150, 1/1H/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_4WSD_013 | 1/1H/268:270, 1/1H/270:271, 1/1H/366:375, 1/1H/399:406, 1/1H/421:424 | No text annotation | ||
| J5_4WSD_014 | 1/1H/531:533, 1/1H/560:564, 1/1H/577:579, 1/1H/1261:1262, 1/1H/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4WSD_015 | 1/1H/584:589, 1/1H/668:671, 1/1H/809:812, 1/1H/1195:1196, 1/1H/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_4WSD_016 | 1/1H/601:604, 1/1H/624:628, 1/1H/635:638, 1/1H/650:654, 1/1H/654:656 | No text annotation | ||
| J5_4WSD_017 | 1/1H/1674:1682, 1/1H/1706:1707, 1/1H/1751:1752, 1/1H/1756:1764, 1/1H/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_4WSD_023 | 1/1H/2057:2064, 1/1H/2446:2453, 1/1H/2500:2507, 1/1H/2582:2588, 1/1H/2606:2611 | No text annotation | ||
| J5_4WSD_019 | 1/1H/2074:2077, 1/1H/2243:2246, 1/1H/2258:2259, 1/1H/2281:2282, 1/1H/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J6_4WSD_001 | 1/14/45:46, 1/14/179:183, 1/14/214:224, 1/14/231:235, 1/14/262:266, 1/14/426:433 | No text annotation | ||
| J6_4WSD_002 | 1/14/2074:2077, 1/14/2243:2246, 1/14/2258:2259, 1/14/2281:2284, 1/14/2384:2395, 1/14/2421:2435 | No text annotation | ||
| J6_4WSD_003 | 1/1H/45:46, 1/1H/179:183, 1/1H/214:224, 1/1H/231:235, 1/1H/262:266, 1/1H/426:433 | No text annotation | ||
| J6_4WSD_004 | 1/1H/2074:2077, 1/1H/2243:2246, 1/1H/2258:2259, 1/1H/2281:2284, 1/1H/2384:2395, 1/1H/2421:2435 | No text annotation | ||
| J7_4WSD_001 | 1/14/8:15, 1/14/525:531, 1/14/2018:2023, 1/14/2040:2043, 1/14/2625:2631, 1/14/2787:2811, 1/14/2889:2895 | No text annotation | ||
| J7_4WSD_004 | 1/14/817:822, 1/14/835:836, 1/14/943:946, 1/14/971:976, 1/14/987:991, 1/14/1163:1164, 1/14/1185:1190 | No text annotation | ||
| J7_4WSD_003 | 1/1H/817:822, 1/1H/835:836, 1/1H/943:946, 1/1H/971:976, 1/1H/987:991, 1/1H/1163:1164, 1/1H/1185:1190 | No text annotation | ||
| J8_4WSD_002 | 1/1H/8:15, 1/1H/525:531, 1/1H/2018:2023, 1/1H/2040:2043, 1/1H/2625:2630, 1/1H/2788:2792, 1/1H/2804:2811, 1/1H/2889:2895 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4WSD_056 | No text annotation | ||
| J3_4WSD_058 | No text annotation | ||
| J3_4WSD_069 | No text annotation | ||
| J4_4WSD_002 | No text annotation | ||
| J4_4WSD_028 | No text annotation | ||
| J4_4WSD_029 | No text annotation | ||
| J4_4WSD_033 | No text annotation | ||
| J5_4WSD_001 | No text annotation | ||
| J5_4WSD_008 | No text annotation | ||
| J5_4WSD_010 | No text annotation | ||
| J5_4WSD_018 | No text annotation | ||
| J7_4WSD_002 | No text annotation | ||
| J8_4WSD_001 | No text annotation |
Coloring options: