Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/13/12:22NANA
1/13/157:164NANA
1/13/186F:191ANANA
1/13/201:216NANA
1/13/259:267NANA
1/13/296:301NANA
1/13/320:333NANA
1/13/342:347NANA
1/13/379:384NANA
1/13/419:424NANA
1/13/458:474NANA
1/13/522:527NANA
1/13/617:623NANA
1/13/689:698NANA
1/13/726:731NANA
1/13/786:796NANA
1/13/838:848NANA
1/13/862:867NANA
1/13/897:902NANA
1/13/963:972NANA
1/13/1012:1017NANA
1/13/1076:1081NANA
1/13/1089:1096NANA
1/13/1134:1140NANA
1/13/1165:1171NANA
1/13/1265:1270NANA
1/13/1314:1323NANA
1/13/1356:1366NANA
1/13/1449:1454NANA
1/13/1515:1520NANA
1/14/59:68
homologous
HL_7RQB_001
NA

HL_29414.1*
1/14/87:95
homologous
HL_7RQB_002
NA

HL_17926.5*
1/14/123:128
homologous
HL_7RQB_003
NA

HL_62869.3*
1/14/137A:141A
homologous
HL_7RQB_004
NA

HL_86069.1*
1/14/194:201
geometric
HL_7A0S_006
NA

HL_23481.5*
1/14/225:230
homologous
HL_7RQB_007
NA

HL_06569.2*
1/14/246:252
homologous
HL_7RQB_008
NA

HL_67216.5*
1/14/270K:270NNANA
1/14/305:312
homologous
HL_7RQB_010
NA

HL_68493.6*
1/14/319:323
homologous
HL_7RQB_011
NA

HL_98557.5*
1/14/327:335
homologous
HL_7RQB_012
NA

HL_08002.6*
1/14/382:392
homologous
HL_7RQB_013
NA

HL_91503.3*
1/14/410:417
homologous
HL_7RQB_014
NA

HL_32512.8*
1/14/462:467
homologous
HL_7RQB_015
NA

HL_43074.18*
1/14/487:493
homologous
HL_7RQB_016
NA

HL_43074.18*
1/14/544:549GNRA
geometric
HL_6UFG_004
NA

HL_43074.18*
1/14/566:575
geometric
HL_7RQB_018
NA

HL_33239.17*
1/14/611:617
homologous
HL_7RQB_019
NA

HL_49196.4*
1/14/629:634
homologous
HL_7RQB_020
NA

HL_43074.18*
1/14/641:647
homologous
HL_7RQB_021
NA

HL_02361.6*
1/14/712:719
homologous
HL_7RQB_022
NA

HL_93727.5*
1/14/744:753
homologous
HL_7RQB_023
NA

HL_39334.5*
1/14/779:785
homologous
HL_7RQB_024
NA

HL_16898.3*
1/14/826:831
homologous
HL_7RQB_025
NA

HL_15942.5*
1/14/955:962
homologous
HL_7RQB_027
NA

HL_43074.18*
1/14/978:985
homologous
HL_7RQB_028
NA

HL_72451.5*
1/14/1168:1181NANA
1/14/1223:1228
homologous
HL_7RQB_032
NA

HL_43074.18*
1/14/1281:1289
homologous
HL_7RQB_033
NA

HL_33239.17*
1/14/1324:1330
homologous
HL_7RQB_034
NA

HL_86880.5*
1/14/1363:1368
homologous
HL_7RQB_035
NA

HL_43074.18*
1/14/1389:1398
homologous
HL_7RQB_036
NA

HL_78457.4*
1/14/1451:1459
homologous
HL_7RQB_037
NA

HL_71540.1*
1/14/1492:1498
homologous
HL_7RQB_038
NA

HL_86880.5*
1/14/1533:1538
geometric
HL_4V88_198
NA

HL_30541.1*
1/14/1565:1568
homologous
HL_7RQB_039
NA

HL_69353.7*
1/14/1612:1619
homologous
HL_7RQB_040
NA

HL_66171.3*
1/14/1630A:1635
homologous
HL_7RQB_041
NA

HL_86880.5*
1/14/1691:1696
homologous
HL_7RQB_042
NA

HL_79299.11*
1/14/1727:1733NANA
1/14/1752:1756
homologous
HL_7RQB_044
NA

HL_79272.3*
1/14/1777:1787
homologous
HL_7RQB_045
NA

HL_43613.4*
1/14/1806:1811
homologous
HL_7RQB_046
NA

HL_43074.18*
1/14/1864:1878
homologous
HL_7RQB_047
NA

HL_43074.18*
1/14/1910:1920
geometric
HL_5TBW_049
NA

HL_98248.1*
1/14/1949:1957
homologous
HL_7RQB_049
NA

HL_53760.4*
1/14/1992:1996NANA
1/14/2027:2036
homologous
HL_7RQB_050
NA

HL_90642.5*
1/14/2143:2148
homologous
HL_7RQB_051
NA
1/14/2209:2215
homologous
HL_7RQB_052
NA

HL_82131.1*
1/14/2248:2256
homologous
HL_7RQB_053
NA
1/14/2264:2276
homologous
HL_7RQB_054
NA

HL_19870.5*
1/14/2302:2314NANA
1/14/2324:2331
homologous
HL_7RQB_056
NA

HL_46142.8*
1/14/2355:2362
homologous
HL_7RQB_057
NA

HL_93727.5*
1/14/2374:2379
homologous
HL_7RQB_058
NA

HL_43074.18*
1/14/2404:2413
homologous
HL_7RQB_059
NA

HL_48376.4*
1/14/2528:2535
homologous
HL_7RQB_061
NA

HL_92681.5*
1/14/2551:2557
geometric
HL_4WF9_058
NA

HL_26055.6*
1/14/2594:2599
homologous
HL_7RQB_063
NA

HL_43074.18*
1/14/2658:2663GNRA
geometric
HL_5B2T_003
NA

HL_43074.18*
1/14/2701:2706
homologous
HL_7RQB_065
NA

HL_31583.1*
1/14/2745:2759
homologous
HL_7RQB_066
NA

HL_56677.5*
1/14/2819:2827
homologous
HL_7RQB_068
NA

HL_05018.6*
1/14/2856:2861
homologous
HL_7RQB_069
NA

HL_43074.18*
1/16/38:44
homologous
HL_5TBW_185
NA

HL_02733.5*
1/16/86:90GNRA
homologous
HL_5TBW_186
NA

HL_43074.18*
1/1G/12:22NANA
1/1G/158:163NANA
1/1G/186F:191ANANA
1/1G/201:216NANA
1/1G/259:267NANA
1/1G/296:301NANA
1/1G/320:333NANA
1/1G/342:347NANA
1/1G/379:384NANA
1/1G/419:424NANA
1/1G/457:475NANA
1/1G/522:527NANA
1/1G/617:623NANA
1/1G/689:698NANA
1/1G/726:731NANA
1/1G/786:796NANA
1/1G/838:848NANA
1/1G/862:867NANA
1/1G/897:902NANA
1/1G/1010:1019NANA
1/1G/1076:1081NANA
1/1G/1089:1096NANA
1/1G/1134:1140NANA
1/1G/1165:1171NANA
1/1G/1265:1270NANA
1/1G/1314:1323NANA
1/1G/1356:1366NANA
1/1G/1449:1454NANA
1/1G/1515:1520NANA
1/1H/59:68
homologous
HL_7RQB_001
NA

HL_29414.1*
1/1H/87:95
homologous
HL_7RQB_002
NA

HL_17926.5*
1/1H/123:128
homologous
HL_7RQB_003
NA

HL_62869.3*
1/1H/137A:141A
homologous
HL_7RQB_004
NA

HL_86069.1*
1/1H/155:171
geometric
HL_4YAZ_004
NA

HL_57052.3*
1/1H/194:201
geometric
HL_7RQB_006
NA

HL_23481.5*
1/1H/225:230
homologous
HL_7RQB_007
NA

HL_06569.2*
1/1H/246:252
homologous
HL_7RQB_008
NA

HL_67216.5*
1/1H/270J:270P
geometric
HL_5TBW_012
NA

HL_94386.1*
1/1H/305:312
homologous
HL_7RQB_010
NA

HL_68493.6*
1/1H/319:323
homologous
HL_7RQB_011
NA

HL_98557.5*
1/1H/327:335
homologous
HL_7RQB_012
NA

HL_08002.6*
1/1H/382:392
homologous
HL_7RQB_013
NA

HL_91503.3*
1/1H/410:417
homologous
HL_7RQB_014
NA

HL_32512.8*
1/1H/462:467
homologous
HL_7RQB_015
NA

HL_43074.18*
1/1H/487:493
homologous
HL_7RQB_016
NA

HL_43074.18*
1/1H/544:549
geometric
HL_5U3G_001
NA

HL_40469.1*
1/1H/566:575
homologous
HL_7RQB_018
NA

HL_33239.17*
1/1H/611:617
geometric
HL_7A0S_019
NA

HL_22515.1*
1/1H/629:634
homologous
HL_7RQB_020
NA

HL_43074.18*
1/1H/641:647
homologous
HL_7RQB_021
NA

HL_02361.6*
1/1H/712:719
homologous
HL_7RQB_022
NA

HL_93727.5*
1/1H/744:753
homologous
HL_7RQB_023
NA

HL_39334.5*
1/1H/779:785
geometric
HL_7A0S_023
NA

HL_77081.1*
1/1H/826:831
homologous
HL_7RQB_025
NA

HL_15942.5*
1/1H/955:962
homologous
HL_7RQB_027
NA

HL_43074.18*
1/1H/978:985
homologous
HL_7RQB_028
NA

HL_72451.5*
1/1H/1170:1179NANA
1/1H/1223:1228
homologous
HL_7RQB_032
NA

HL_43074.18*
1/1H/1281:1289
homologous
HL_7RQB_033
NA

HL_33239.17*
1/1H/1324:1330
homologous
HL_7RQB_034
NA

HL_86880.5*
1/1H/1363:1368
homologous
HL_7RQB_035
NA

HL_43074.18*
1/1H/1389:1398
homologous
HL_7RQB_036
NA

HL_78457.4*
1/1H/1451:1459
homologous
HL_7RQB_037
NA

HL_71540.1*
1/1H/1492:1498
homologous
HL_7RQB_038
NA

HL_86880.5*
1/1H/1565:1568
homologous
HL_7RQB_039
NA

HL_69353.7*
1/1H/1612:1619
homologous
HL_7RQB_040
NA

HL_66171.3*
1/1H/1630A:1635
homologous
HL_7RQB_041
NA

HL_86880.5*
1/1H/1691:1696
homologous
HL_7RQB_042
NA

HL_79299.11*
1/1H/1727:1733
homologous
HL_7RQB_043
NA

HL_49638.1*
1/1H/1752:1756
homologous
HL_7RQB_044
NA

HL_79272.3*
1/1H/1777:1787
homologous
HL_7RQB_045
NA

HL_43613.4*
1/1H/1806:1811
homologous
HL_7RQB_046
NA

HL_43074.18*
1/1H/1864:1878
homologous
HL_7RQB_047
NA

HL_43074.18*
1/1H/1910:1920
geometric
HL_5TBW_049
NA

HL_98248.1*
1/1H/1949:1957
homologous
HL_7RQB_049
NA

HL_53760.4*
1/1H/2027:2036
homologous
HL_7RQB_050
NA

HL_90642.5*
1/1H/2143:2148
geometric
HL_2Y9H_003
NA

HL_98557.5*
1/1H/2209:2215
homologous
HL_7RQB_052
NA

HL_82131.1*
1/1H/2248:2256
homologous
HL_7RQB_053
NA
1/1H/2264:2276
homologous
HL_7RQB_054
NA

HL_19870.5*
1/1H/2303:2313
homologous
HL_7RQB_055
NA

HL_11805.3*
1/1H/2324:2331
homologous
HL_7RQB_056
NA

HL_46142.8*
1/1H/2355:2362
homologous
HL_7RQB_057
NA

HL_93727.5*
1/1H/2374:2379
homologous
HL_7RQB_058
NA

HL_43074.18*
1/1H/2404:2413
homologous
HL_7RQB_059
NA

HL_48376.4*
1/1H/2471:2479
geometric
HL_361D_002
NA

HL_18218.2*
1/1H/2528:2535
homologous
HL_7RQB_061
NA

HL_92681.5*
1/1H/2551:2557
geometric
HL_4WF9_058
NA

HL_26055.6*
1/1H/2594:2599
homologous
HL_7RQB_063
NA

HL_43074.18*
1/1H/2658:2663
homologous
HL_7RQB_064
NA

HL_43074.18*
1/1H/2701:2706
homologous
HL_7RQB_065
NA

HL_31583.1*
1/1H/2745:2759
homologous
HL_7RQB_066
NA

HL_56677.5*
1/1H/2819:2827
homologous
HL_7RQB_068
NA

HL_05018.6*
1/1H/2856:2861
homologous
HL_7RQB_069
NA

HL_43074.18*
1/1J/38:44
homologous
HL_5TBW_185
NA

HL_02733.5*
1/1J/86:90NANA
1/1K/30:40NANA
1/1K/53:61NANA
1/1L/12:23NANA
1/1L/30:40NANA
1/1L/53:61NANA
1/2K/13:23NANA
1/2K/32:40NANA
1/2K/54:62NANA
1/2L/13:23NANA
1/2L/32:40NANA
1/2L/54:62NANA
1/3K/11:24NANA
1/3K/53:61NANA
1/3L/13:22NANA
1/3L/31:39NANA
1/3L/53:61NANA

Problematic loops

#loop idProblemSequence
HL_4WSD_002NA
HL_4WSD_036NA
HL_4WSD_053NA
HL_4WSD_058NA
HL_4WSD_061NA
HL_4WSD_062NA
HL_4WSD_094
geometric
HL_2ZZM_002
HL_4WSD_106NA
HL_4WSD_125NA
HL_4WSD_127NA
HL_4WSD_158NA
HL_4WSD_163NA
HL_4WSD_166
geometric
HL_4V88_198
HL_4WSD_167NA
HL_4WSD_176NA
HL_4WSD_205NA
HL_4WSD_210NA
HL_4WSD_223NA

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/13/30:32,
1/13/552:553
NANA
1/13/44:45,
1/13/396:398
NANA
1/13/47:52,
1/13/359:361
NANA
1/13/54:56,
1/13/356:357
NANA
1/13/63:66,
1/13/103:104
NANA
1/13/67:69,
1/13/99:102
NANA
1/13/129:131,
1/13/231:232
NANA
1/13/132:136,
1/13/227:230
NANA
1/13/148:154,
1/13/167:174
NANA
1/13/155:157,
1/13/164:166
NANA
1/13/184:186B,
1/13/191E:193
NANA
1/13/186C:186E,
1/13/191B:191D
NANA
1/13/242:247,
1/13/277:284
NANA
1/13/249:252,
1/13/274:275
NANA
1/13/292:293,
1/13/304:308
NANA
1/13/367:369,
1/13/392:393
NANA
1/13/371:375,
1/13/389:390
NANA
1/13/375:376,
1/13/387:389
NANA
1/13/409:417,
1/13/426:433
NANA
1/13/446:450,
1/13/483:488
NANA
1/13/450:456,
1/13/476:483
NANA
1/13/504:511,
1/13/540:541
NANA
1/13/515:521,
1/13/528:536
NANA
1/13/569:575,
1/13/880:881
NANA
1/13/580:584,
1/13/757:761
NANA
1/13/594:596,
1/13/644:645
NANA
1/13/597:599,
1/13/639:643
NANA
1/13/605:612,
1/13/628:633
NANA
1/13/654:655,
1/13/751:754
NANA
1/13/657:658,
1/13/747:749
NANA
1/13/662:666,
1/13/740:743
NANA
1/13/673:678,
1/13/712:717
NANA
1/13/683:688,
1/13/699:707
NANA
1/13/774:778,
1/13/804:805
NANA
1/13/779:783,
1/13/799:803
NANA
1/13/887:894,
1/13/905:910
NANA
1/13/922:923,
1/13/1393:1395
NANA
1/13/925:927,
1/13/1390:1391
NANA
1/13/933:935,
1/13/1380:1384
NANA
1/13/953:954,
1/13/1226:1228
NANA
1/13/993:997,
1/13/1044:1045
NANA
1/13/1002:1006,
1/13/1023:1038
NANA
1/13/1007:1009,
1/13/1020:1022
NANA
1/13/1048:1050,
1/13/1208:1209
NANA
1/13/1052:1056,
1/13/1204:1206
NANA
1/13/1057:1058,
1/13/1199:1203
NANA
1/13/1060:1061,
1/13/1195:1197
NANA
1/13/1061:1063,
1/13/1193:1195
NANA
1/13/1124:1132,
1/13/1142:1149
NANA
1/13/1247:1253,
1/13/1284:1290
NANA
1/13/1255:1258,
1/13/1277:1282
NANA
1/13/1259:1262,
1/13/1273:1276
NANA
1/13/1303:1308,
1/13/1329:1334
NANA
1/13/1399:1401,
1/13/1501:1504
NANA
1/13/1401:1404,
1/13/1497:1501
NANA
1/13/1405:1407,
1/13/1494:1496
NANA
1/13/1407:1409,
1/13/1491:1494
NANA
1/13/1412:1414,
1/13/1486:1488
NANA
1/13/1416:1419,
1/13/1481:1484
NANA
1/13/1431:1435,
1/13/1466:1469
NANA
1/13/1435:1437,
1/13/1464:1466
NANA
1/13/1440:1447,
1/13/1459:1461
NANA
1/14/24:30,
1/14/510:516
Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA

IL_66414.5*
1/14/36:37,
1/14/442:444
Single bulged A
homologous
IL_7RQB_002
NA

IL_80007.16*
1/14/43:45,
1/14/433:436
Major groove platform with extra cWW
geometric
IL_4V9F_003
NA

IL_95485.6*
1/14/81:85,
1/14/97:105
Kink-turn
homologous
IL_7RQB_004
NA

IL_29549.9*
1/14/183:184,
1/14/212:214
Single stack bend
homologous
IL_7RQB_005
NA

IL_04038.4*
1/14/188:194,
1/14/201:208
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
NA

IL_04346.5*
1/14/239:245,
1/14/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA

IL_35110.5*
1/14/270J:270K,
1/14/270N:270P
Single bulged U
homologous
IL_7RQB_008
NA

IL_83039.11*
1/14/271:272,
1/14/365:366
NANA
1/14/273:273A,
1/14/363E:364
Major groove platform
homologous
IL_7RQB_009
NA

IL_13730.12*
1/14/273D:279,
1/14/361:363B
NANA
1/14/280:284,
1/14/357:360
tSH-tHW
homologous
IL_7RQB_011
NA

IL_08757.3*
1/14/288:290,
1/14/350:353
Isolated tHS basepair with bulges
homologous
IL_7RQB_012
NA

IL_38958.6*
1/14/293:295,
1/14/343:347

homologous
IL_7RQB_013
NA

IL_69440.1*
1/14/481:484,
1/14/496:509

homologous
IL_7RQB_014
NA

IL_60992.5*
1/14/564:566,
1/14/575:577

homologous
IL_7RQB_015
NA

IL_01312.13*
1/14/606:609A,
1/14/618A:622
AAA cross-strand stack
homologous
IL_7RQB_016
NA

IL_56467.6*
1/14/672:674,
1/14/806:808

geometric
IL_7RQB_017
NA

IL_01312.13*
1/14/674:678,
1/14/799:806

homologous
IL_7RQB_018
NA

IL_17470.5*
1/14/697:698,
1/14/763:765
Single bulged A
homologous
IL_7RQB_019
NA

IL_80007.16*
1/14/702:703,
1/14/728:730
Single bulged G
geometric
IL_7RQB_020
NA

IL_59137.10*
1/14/703:707,
1/14/724:728
Triple sheared
homologous
IL_7RQB_021
NA

IL_56467.6*
1/14/738:741,
1/14/756:758
Major groove platform with extra cWW
homologous
IL_7RQB_022
NA

IL_95485.6*
1/14/775:777,
1/14/787:791
Multiple bulged bases
homologous
IL_7RQB_023
NA

IL_90991.5*
1/14/837:838,
1/14/940:942
Single stack bend
homologous
IL_7RQB_024
NA

IL_04038.4*
1/14/844:846,
1/14/931:934
Intercalated cWW
geometric
IL_7RQB_025
NA

IL_01312.13*
1/14/846:850,
1/14/928:931

homologous
IL_7RQB_026
NA

IL_94165.1*
1/14/858:862,
1/14/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_7RQB_027
NA

IL_83354.1*
1/14/862:863,
1/14/913:915
Minor groove platform
geometric
IL_4WF9_032
NA

IL_06437.11*
1/14/864:868,
1/14/909:912
C-loop
homologous
IL_7RQB_029
NA

IL_63596.4*
1/14/870:872,
1/14/905:907
Isolated cWS basepair
homologous
IL_7RQB_030
NA

IL_67621.5*
1/14/952:954,
1/14/963:965

homologous
IL_7RQB_034
NA

IL_01312.13*
1/14/994:996,
1/14/1159:1160
Single bulged C
homologous
IL_7RQB_035
NA

IL_61258.10*
1/14/998:1002,
1/14/1153:1157
UAA/GAN
homologous
IL_7RQB_036
NA

IL_53523.5*
1/14/1004:1011,
1/14/1150:1151
NANA
1/14/1011:1013,
1/14/1149:1150
NANA
1/14/1018:1024,
1/14/1140:1144

homologous
IL_7RQB_039
NA

IL_57188.3*
1/14/1024:1030,
1/14/1124:1140

geometric
IL_7RQB_040
NA

IL_55786.1*
1/14/1031:1034,
1/14/1121:1123
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_041
NA

IL_55456.1*
1/14/1196:1198,
1/14/1247:1250
Isolated cWS basepair
homologous
IL_7RQB_045
NA

IL_67621.5*
1/14/1202:1206,
1/14/1240:1243

homologous
IL_7RQB_046
NA

IL_68574.2*
1/14/1208:1215,
1/14/1234:1238
Kink-turn
homologous
IL_7RQB_047
NA

IL_29549.9*
1/14/1219:1221,
1/14/1229A:1230
Single bulged A
homologous
IL_7RQB_048
NA

IL_80007.16*
1/14/1262:1269,
1/14/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA

IL_04346.5*
1/14/1310:1313,
1/14/1603:1604
Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA

IL_70995.6*
1/14/1319:1324,
1/14/1330:1333
C-loop with extra cWW pair
geometric
IL_4V88_408
NA

IL_51590.1*
1/14/1351:1355,
1/14/1376:1380
UAA/GAN
homologous
IL_7RQB_052
NA

IL_53523.5*
1/14/1357:1361,
1/14/1370:1374
tSH-tHW-tHS
homologous
IL_7RQB_053
NA

IL_39521.5*
1/14/1415:1416,
1/14/1582:1587

homologous
IL_7RQB_054
NA

IL_67474.3*
1/14/1417:1421,
1/14/1577:1581
UAA/GAN
homologous
IL_7RQB_055
NA

IL_53523.5*
1/14/1433:1435,
1/14/1557:1560
Isolated tWW turn
homologous
IL_7RQB_056
NA

IL_54997.5*
1/14/1437:1440,
1/14/1551:1555
tSH-tHW
homologous
IL_7RQB_057
NA

IL_08757.3*
1/14/1448:1449A,
1/14/1462:1463
Single stack bend
homologous
IL_7RQB_058
NA

IL_31836.1*
1/14/1450:1451,
1/14/1459:1461
Single bulged A
geometric
IL_7RQB_059
NA

IL_80007.16*
1/14/1469:1473,
1/14/1520:1523
UAA/GAN
homologous
IL_7RQB_060
NA

IL_53523.5*
1/14/1482:1483,
1/14/1506:1512

homologous
IL_7RQB_061
NA

IL_46464.1*
1/14/1489:1491,
1/14/1499:1500
Single bulged A
homologous
IL_7RQB_062
NA

IL_40508.4*
1/14/1526:1530,
1/14/1541:1546

homologous
IL_7RQB_063
NA

IL_89836.1*
1/14/1651:1656,
1/14/2004:2006

homologous
IL_7RQB_064
NA

IL_12566.2*
1/14/1686:1691,
1/14/1696:1702
tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
NA

IL_66584.5*
1/14/1770:1771,
1/14/1980:1982
Single bulged A
homologous
IL_7RQB_069
NA

IL_80007.16*
1/14/1798:1804,
1/14/1813:1821
Kink-turn related
homologous
IL_7RQB_070
NA

IL_17069.3*
1/14/1837:1840,
1/14/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
homologous
IL_7RQB_071
NA

IL_31836.1*
1/14/1841:1842,
1/14/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
geometric
IL_5J7L_315
NA

IL_13730.12*
1/14/1846:1849,
1/14/1893:1894
Minor groove platform
homologous
IL_7RQB_073
NA

IL_06437.11*
1/14/1851:1855,
1/14/1887:1891
UAA/GAN with extra pair
homologous
IL_7RQB_074
NA

IL_34907.2*
1/14/1856:1860,
1/14/1882:1886
Triple sheared
homologous
IL_7RQB_075
NA

IL_56467.6*
1/14/1933:1934,
1/14/1964:1967
Multiple bulged bases
geometric
IL_7RQB_076
NA

IL_69632.1*
1/14/1934:1945,
1/14/1961:1964

geometric
IL_4WF9_077
NA

IL_70285.1*
1/14/2050:2052,
1/14/2617:2618
Major groove platform
homologous
IL_7RQB_078
NA

IL_80663.10*
1/14/2054:2057,
1/14/2611:2615
NANA
1/14/2067:2069,
1/14/2442:2443
Single bulged U
homologous
IL_7RQB_080
NA

IL_83039.11*
1/14/2070:2071,
1/14/2438:2441
Minor groove platform
homologous
IL_7RQB_081
NA

IL_06437.11*
1/14/2081:2083,
1/14/2236:2239
Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA

IL_38958.6*
1/14/2085:2087,
1/14/2232:2234

homologous
IL_7RQB_083
NA

IL_01312.13*
1/14/2106:2110,
1/14/2179:2183

geometric
IL_5BTM_001
NA

IL_05867.1*
1/14/2121:2127,
1/14/2161:2177
NANA
1/14/2127:2137,
1/14/2155:2161
NANA
1/14/2137:2140,
1/14/2151:2155
NANA
1/14/2297:2299,
1/14/2317:2321
Isolated tHS basepair with bulges
homologous
IL_7RQB_088
NA

IL_38958.6*
1/14/2350:2353,
1/14/2364:2367
Double sheared
homologous
IL_7RQB_089
NA

IL_09705.7*
1/14/2401:2403,
1/14/2414:2415
Minor groove platform
geometric
IL_7TZS_003
NA

IL_06437.11*
1/14/2453:2454,
1/14/2498:2500
Single stack bend
geometric
IL_7RQB_091
NA

IL_04038.4*
1/14/2454:2455,
1/14/2496:2498
Major groove platform
homologous
IL_7RQB_092
NA

IL_80663.10*
1/14/2456:2459,
1/14/2493:2495
Major groove platform with extra pair
geometric
IL_7RQB_093
NA

IL_87630.5*
1/14/2459:2461,
1/14/2489:2493
Major groove minor groove platform with extra cWW
homologous
IL_7RQB_094
NA

IL_96042.4*
1/14/2466:2470,
1/14/2480:2484
Triple sheared
homologous
IL_7RQB_095
NA

IL_56467.6*
1/14/2507:2508,
1/14/2580:2582
Major groove platform
homologous
IL_7RQB_096
NA

IL_02060.4*
1/14/2510:2512,
1/14/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_7RQB_097
NA

IL_01312.13*