4WSD Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/13/12:22 | NA | NA | ||
1/13/157:164 | NA | NA | ||
1/13/186F:191A | NA | NA | ||
1/13/201:216 | NA | NA | ||
1/13/259:267 | NA | NA | ||
1/13/296:301 | NA | NA | ||
1/13/320:333 | NA | NA | ||
1/13/342:347 | NA | NA | ||
1/13/379:384 | NA | NA | ||
1/13/419:424 | NA | NA | ||
1/13/458:474 | NA | NA | ||
1/13/522:527 | NA | NA | ||
1/13/617:623 | NA | NA | ||
1/13/689:698 | NA | NA | ||
1/13/726:731 | NA | NA | ||
1/13/786:796 | NA | NA | ||
1/13/838:848 | NA | NA | ||
1/13/862:867 | NA | NA | ||
1/13/897:902 | NA | NA | ||
1/13/963:972 | NA | NA | ||
1/13/1012:1017 | NA | NA | ||
1/13/1076:1081 | NA | NA | ||
1/13/1089:1096 | NA | NA | ||
1/13/1134:1140 | NA | NA | ||
1/13/1165:1171 | NA | NA | ||
1/13/1265:1270 | NA | NA | ||
1/13/1314:1323 | NA | NA | ||
1/13/1356:1366 | NA | NA | ||
1/13/1449:1454 | NA | NA | ||
1/13/1515:1520 | NA | NA | ||
1/14/59:68 | homologous HL_7RQB_001 | NA HL_29414.1* | ||
1/14/87:95 | homologous HL_7RQB_002 | NA HL_17926.5* | ||
1/14/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
1/14/137A:141A | homologous HL_7RQB_004 | NA HL_86069.1* | ||
1/14/194:201 | geometric HL_7A0S_006 | NA HL_23481.5* | ||
1/14/225:230 | homologous HL_7RQB_007 | NA HL_06569.2* | ||
1/14/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
1/14/270K:270N | NA | NA | ||
1/14/305:312 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
1/14/319:323 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
1/14/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
1/14/382:392 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
1/14/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
1/14/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
1/14/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
1/14/544:549 | GNRA geometric HL_6UFG_004 | NA HL_43074.18* | ||
1/14/566:575 | geometric HL_7RQB_018 | NA HL_33239.17* | ||
1/14/611:617 | homologous HL_7RQB_019 | NA HL_49196.4* | ||
1/14/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
1/14/641:647 | homologous HL_7RQB_021 | NA HL_02361.6* | ||
1/14/712:719 | homologous HL_7RQB_022 | NA HL_93727.5* | ||
1/14/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
1/14/779:785 | homologous HL_7RQB_024 | NA HL_16898.3* | ||
1/14/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
1/14/955:962 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
1/14/978:985 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
1/14/1168:1181 | NA | NA | ||
1/14/1223:1228 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
1/14/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
1/14/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
1/14/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
1/14/1389:1398 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
1/14/1451:1459 | homologous HL_7RQB_037 | NA HL_71540.1* | ||
1/14/1492:1498 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
1/14/1533:1538 | geometric HL_4V88_198 | NA HL_30541.1* | ||
1/14/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
1/14/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
1/14/1630A:1635 | homologous HL_7RQB_041 | NA HL_86880.5* | ||
1/14/1691:1696 | homologous HL_7RQB_042 | NA HL_79299.11* | ||
1/14/1727:1733 | NA | NA | ||
1/14/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
1/14/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
1/14/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
1/14/1864:1878 | homologous HL_7RQB_047 | NA HL_43074.18* | ||
1/14/1910:1920 | geometric HL_5TBW_049 | NA HL_98248.1* | ||
1/14/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
1/14/1992:1996 | NA | NA | ||
1/14/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
1/14/2143:2148 | homologous HL_7RQB_051 | NA | ||
1/14/2209:2215 | homologous HL_7RQB_052 | NA HL_82131.1* | ||
1/14/2248:2256 | homologous HL_7RQB_053 | NA | ||
1/14/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
1/14/2302:2314 | NA | NA | ||
1/14/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
1/14/2355:2362 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
1/14/2374:2379 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
1/14/2404:2413 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
1/14/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
1/14/2551:2557 | geometric HL_4WF9_058 | NA HL_26055.6* | ||
1/14/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
1/14/2658:2663 | GNRA geometric HL_5B2T_003 | NA HL_43074.18* | ||
1/14/2701:2706 | homologous HL_7RQB_065 | NA HL_31583.1* | ||
1/14/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
1/14/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
1/14/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
1/16/38:44 | homologous HL_5TBW_185 | NA HL_02733.5* | ||
1/16/86:90 | GNRA homologous HL_5TBW_186 | NA HL_43074.18* | ||
1/1G/12:22 | NA | NA | ||
1/1G/158:163 | NA | NA | ||
1/1G/186F:191A | NA | NA | ||
1/1G/201:216 | NA | NA | ||
1/1G/259:267 | NA | NA | ||
1/1G/296:301 | NA | NA | ||
1/1G/320:333 | NA | NA | ||
1/1G/342:347 | NA | NA | ||
1/1G/379:384 | NA | NA | ||
1/1G/419:424 | NA | NA | ||
1/1G/457:475 | NA | NA | ||
1/1G/522:527 | NA | NA | ||
1/1G/617:623 | NA | NA | ||
1/1G/689:698 | NA | NA | ||
1/1G/726:731 | NA | NA | ||
1/1G/786:796 | NA | NA | ||
1/1G/838:848 | NA | NA | ||
1/1G/862:867 | NA | NA | ||
1/1G/897:902 | NA | NA | ||
1/1G/1010:1019 | NA | NA | ||
1/1G/1076:1081 | NA | NA | ||
1/1G/1089:1096 | NA | NA | ||
1/1G/1134:1140 | NA | NA | ||
1/1G/1165:1171 | NA | NA | ||
1/1G/1265:1270 | NA | NA | ||
1/1G/1314:1323 | NA | NA | ||
1/1G/1356:1366 | NA | NA | ||
1/1G/1449:1454 | NA | NA | ||
1/1G/1515:1520 | NA | NA | ||
1/1H/59:68 | homologous HL_7RQB_001 | NA HL_29414.1* | ||
1/1H/87:95 | homologous HL_7RQB_002 | NA HL_17926.5* | ||
1/1H/123:128 | homologous HL_7RQB_003 | NA HL_62869.3* | ||
1/1H/137A:141A | homologous HL_7RQB_004 | NA HL_86069.1* | ||
1/1H/155:171 | geometric HL_4YAZ_004 | NA HL_57052.3* | ||
1/1H/194:201 | geometric HL_7RQB_006 | NA HL_23481.5* | ||
1/1H/225:230 | homologous HL_7RQB_007 | NA HL_06569.2* | ||
1/1H/246:252 | homologous HL_7RQB_008 | NA HL_67216.5* | ||
1/1H/270J:270P | geometric HL_5TBW_012 | NA HL_94386.1* | ||
1/1H/305:312 | homologous HL_7RQB_010 | NA HL_68493.6* | ||
1/1H/319:323 | homologous HL_7RQB_011 | NA HL_98557.5* | ||
1/1H/327:335 | homologous HL_7RQB_012 | NA HL_08002.6* | ||
1/1H/382:392 | homologous HL_7RQB_013 | NA HL_91503.3* | ||
1/1H/410:417 | homologous HL_7RQB_014 | NA HL_32512.8* | ||
1/1H/462:467 | homologous HL_7RQB_015 | NA HL_43074.18* | ||
1/1H/487:493 | homologous HL_7RQB_016 | NA HL_43074.18* | ||
1/1H/544:549 | geometric HL_5U3G_001 | NA HL_40469.1* | ||
1/1H/566:575 | homologous HL_7RQB_018 | NA HL_33239.17* | ||
1/1H/611:617 | geometric HL_7A0S_019 | NA HL_22515.1* | ||
1/1H/629:634 | homologous HL_7RQB_020 | NA HL_43074.18* | ||
1/1H/641:647 | homologous HL_7RQB_021 | NA HL_02361.6* | ||
1/1H/712:719 | homologous HL_7RQB_022 | NA HL_93727.5* | ||
1/1H/744:753 | homologous HL_7RQB_023 | NA HL_39334.5* | ||
1/1H/779:785 | geometric HL_7A0S_023 | NA HL_77081.1* | ||
1/1H/826:831 | homologous HL_7RQB_025 | NA HL_15942.5* | ||
1/1H/955:962 | homologous HL_7RQB_027 | NA HL_43074.18* | ||
1/1H/978:985 | homologous HL_7RQB_028 | NA HL_72451.5* | ||
1/1H/1170:1179 | NA | NA | ||
1/1H/1223:1228 | homologous HL_7RQB_032 | NA HL_43074.18* | ||
1/1H/1281:1289 | homologous HL_7RQB_033 | NA HL_33239.17* | ||
1/1H/1324:1330 | homologous HL_7RQB_034 | NA HL_86880.5* | ||
1/1H/1363:1368 | homologous HL_7RQB_035 | NA HL_43074.18* | ||
1/1H/1389:1398 | homologous HL_7RQB_036 | NA HL_78457.4* | ||
1/1H/1451:1459 | homologous HL_7RQB_037 | NA HL_71540.1* | ||
1/1H/1492:1498 | homologous HL_7RQB_038 | NA HL_86880.5* | ||
1/1H/1565:1568 | homologous HL_7RQB_039 | NA HL_69353.7* | ||
1/1H/1612:1619 | homologous HL_7RQB_040 | NA HL_66171.3* | ||
1/1H/1630A:1635 | homologous HL_7RQB_041 | NA HL_86880.5* | ||
1/1H/1691:1696 | homologous HL_7RQB_042 | NA HL_79299.11* | ||
1/1H/1727:1733 | homologous HL_7RQB_043 | NA HL_49638.1* | ||
1/1H/1752:1756 | homologous HL_7RQB_044 | NA HL_79272.3* | ||
1/1H/1777:1787 | homologous HL_7RQB_045 | NA HL_43613.4* | ||
1/1H/1806:1811 | homologous HL_7RQB_046 | NA HL_43074.18* | ||
1/1H/1864:1878 | homologous HL_7RQB_047 | NA HL_43074.18* | ||
1/1H/1910:1920 | geometric HL_5TBW_049 | NA HL_98248.1* | ||
1/1H/1949:1957 | homologous HL_7RQB_049 | NA HL_53760.4* | ||
1/1H/2027:2036 | homologous HL_7RQB_050 | NA HL_90642.5* | ||
1/1H/2143:2148 | geometric HL_2Y9H_003 | NA HL_98557.5* | ||
1/1H/2209:2215 | homologous HL_7RQB_052 | NA HL_82131.1* | ||
1/1H/2248:2256 | homologous HL_7RQB_053 | NA | ||
1/1H/2264:2276 | homologous HL_7RQB_054 | NA HL_19870.5* | ||
1/1H/2303:2313 | homologous HL_7RQB_055 | NA HL_11805.3* | ||
1/1H/2324:2331 | homologous HL_7RQB_056 | NA HL_46142.8* | ||
1/1H/2355:2362 | homologous HL_7RQB_057 | NA HL_93727.5* | ||
1/1H/2374:2379 | homologous HL_7RQB_058 | NA HL_43074.18* | ||
1/1H/2404:2413 | homologous HL_7RQB_059 | NA HL_48376.4* | ||
1/1H/2471:2479 | geometric HL_361D_002 | NA HL_18218.2* | ||
1/1H/2528:2535 | homologous HL_7RQB_061 | NA HL_92681.5* | ||
1/1H/2551:2557 | geometric HL_4WF9_058 | NA HL_26055.6* | ||
1/1H/2594:2599 | homologous HL_7RQB_063 | NA HL_43074.18* | ||
1/1H/2658:2663 | homologous HL_7RQB_064 | NA HL_43074.18* | ||
1/1H/2701:2706 | homologous HL_7RQB_065 | NA HL_31583.1* | ||
1/1H/2745:2759 | homologous HL_7RQB_066 | NA HL_56677.5* | ||
1/1H/2819:2827 | homologous HL_7RQB_068 | NA HL_05018.6* | ||
1/1H/2856:2861 | homologous HL_7RQB_069 | NA HL_43074.18* | ||
1/1J/38:44 | homologous HL_5TBW_185 | NA HL_02733.5* | ||
1/1J/86:90 | NA | NA | ||
1/1K/30:40 | NA | NA | ||
1/1K/53:61 | NA | NA | ||
1/1L/12:23 | NA | NA | ||
1/1L/30:40 | NA | NA | ||
1/1L/53:61 | NA | NA | ||
1/2K/13:23 | NA | NA | ||
1/2K/32:40 | NA | NA | ||
1/2K/54:62 | NA | NA | ||
1/2L/13:23 | NA | NA | ||
1/2L/32:40 | NA | NA | ||
1/2L/54:62 | NA | NA | ||
1/3K/11:24 | NA | NA | ||
1/3K/53:61 | NA | NA | ||
1/3L/13:22 | NA | NA | ||
1/3L/31:39 | NA | NA | ||
1/3L/53:61 | NA | NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4WSD_002 | NA | ||
HL_4WSD_036 | NA | ||
HL_4WSD_053 | NA | ||
HL_4WSD_058 | NA | ||
HL_4WSD_061 | NA | ||
HL_4WSD_062 | NA | ||
HL_4WSD_094 | geometric HL_2ZZM_002 | ||
HL_4WSD_106 | NA | ||
HL_4WSD_125 | NA | ||
HL_4WSD_127 | NA | ||
HL_4WSD_158 | NA | ||
HL_4WSD_163 | NA | ||
HL_4WSD_166 | geometric HL_4V88_198 | ||
HL_4WSD_167 | NA | ||
HL_4WSD_176 | NA | ||
HL_4WSD_205 | NA | ||
HL_4WSD_210 | NA | ||
HL_4WSD_223 | NA |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/13/30:32, 1/13/552:553 | NA | NA | ||
1/13/44:45, 1/13/396:398 | NA | NA | ||
1/13/47:52, 1/13/359:361 | NA | NA | ||
1/13/54:56, 1/13/356:357 | NA | NA | ||
1/13/63:66, 1/13/103:104 | NA | NA | ||
1/13/67:69, 1/13/99:102 | NA | NA | ||
1/13/129:131, 1/13/231:232 | NA | NA | ||
1/13/132:136, 1/13/227:230 | NA | NA | ||
1/13/148:154, 1/13/167:174 | NA | NA | ||
1/13/155:157, 1/13/164:166 | NA | NA | ||
1/13/184:186B, 1/13/191E:193 | NA | NA | ||
1/13/186C:186E, 1/13/191B:191D | NA | NA | ||
1/13/242:247, 1/13/277:284 | NA | NA | ||
1/13/249:252, 1/13/274:275 | NA | NA | ||
1/13/292:293, 1/13/304:308 | NA | NA | ||
1/13/367:369, 1/13/392:393 | NA | NA | ||
1/13/371:375, 1/13/389:390 | NA | NA | ||
1/13/375:376, 1/13/387:389 | NA | NA | ||
1/13/409:417, 1/13/426:433 | NA | NA | ||
1/13/446:450, 1/13/483:488 | NA | NA | ||
1/13/450:456, 1/13/476:483 | NA | NA | ||
1/13/504:511, 1/13/540:541 | NA | NA | ||
1/13/515:521, 1/13/528:536 | NA | NA | ||
1/13/569:575, 1/13/880:881 | NA | NA | ||
1/13/580:584, 1/13/757:761 | NA | NA | ||
1/13/594:596, 1/13/644:645 | NA | NA | ||
1/13/597:599, 1/13/639:643 | NA | NA | ||
1/13/605:612, 1/13/628:633 | NA | NA | ||
1/13/654:655, 1/13/751:754 | NA | NA | ||
1/13/657:658, 1/13/747:749 | NA | NA | ||
1/13/662:666, 1/13/740:743 | NA | NA | ||
1/13/673:678, 1/13/712:717 | NA | NA | ||
1/13/683:688, 1/13/699:707 | NA | NA | ||
1/13/774:778, 1/13/804:805 | NA | NA | ||
1/13/779:783, 1/13/799:803 | NA | NA | ||
1/13/887:894, 1/13/905:910 | NA | NA | ||
1/13/922:923, 1/13/1393:1395 | NA | NA | ||
1/13/925:927, 1/13/1390:1391 | NA | NA | ||
1/13/933:935, 1/13/1380:1384 | NA | NA | ||
1/13/953:954, 1/13/1226:1228 | NA | NA | ||
1/13/993:997, 1/13/1044:1045 | NA | NA | ||
1/13/1002:1006, 1/13/1023:1038 | NA | NA | ||
1/13/1007:1009, 1/13/1020:1022 | NA | NA | ||
1/13/1048:1050, 1/13/1208:1209 | NA | NA | ||
1/13/1052:1056, 1/13/1204:1206 | NA | NA | ||
1/13/1057:1058, 1/13/1199:1203 | NA | NA | ||
1/13/1060:1061, 1/13/1195:1197 | NA | NA | ||
1/13/1061:1063, 1/13/1193:1195 | NA | NA | ||
1/13/1124:1132, 1/13/1142:1149 | NA | NA | ||
1/13/1247:1253, 1/13/1284:1290 | NA | NA | ||
1/13/1255:1258, 1/13/1277:1282 | NA | NA | ||
1/13/1259:1262, 1/13/1273:1276 | NA | NA | ||
1/13/1303:1308, 1/13/1329:1334 | NA | NA | ||
1/13/1399:1401, 1/13/1501:1504 | NA | NA | ||
1/13/1401:1404, 1/13/1497:1501 | NA | NA | ||
1/13/1405:1407, 1/13/1494:1496 | NA | NA | ||
1/13/1407:1409, 1/13/1491:1494 | NA | NA | ||
1/13/1412:1414, 1/13/1486:1488 | NA | NA | ||
1/13/1416:1419, 1/13/1481:1484 | NA | NA | ||
1/13/1431:1435, 1/13/1466:1469 | NA | NA | ||
1/13/1435:1437, 1/13/1464:1466 | NA | NA | ||
1/13/1440:1447, 1/13/1459:1461 | NA | NA | ||
1/14/24:30, 1/14/510:516 | Triple sheared with non-canonical cWW homologous IL_7RQB_001 | NA IL_66414.5* | ||
1/14/36:37, 1/14/442:444 | Single bulged A homologous IL_7RQB_002 | NA IL_80007.16* | ||
1/14/43:45, 1/14/433:436 | Major groove platform with extra cWW geometric IL_4V9F_003 | NA IL_95485.6* | ||
1/14/81:85, 1/14/97:105 | Kink-turn homologous IL_7RQB_004 | NA IL_29549.9* | ||
1/14/183:184, 1/14/212:214 | Single stack bend homologous IL_7RQB_005 | NA IL_04038.4* | ||
1/14/188:194, 1/14/201:208 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_006 | NA IL_04346.5* | ||
1/14/239:245, 1/14/253:258 | 7x6 Sarcin-Ricin; G-bulge homologous IL_7RQB_007 | NA IL_35110.5* | ||
1/14/270J:270K, 1/14/270N:270P | Single bulged U homologous IL_7RQB_008 | NA IL_83039.11* | ||
1/14/271:272, 1/14/365:366 | NA | NA | ||
1/14/273:273A, 1/14/363E:364 | Major groove platform homologous IL_7RQB_009 | NA IL_13730.12* | ||
1/14/273D:279, 1/14/361:363B | NA | NA | ||
1/14/280:284, 1/14/357:360 | tSH-tHW homologous IL_7RQB_011 | NA IL_08757.3* | ||
1/14/288:290, 1/14/350:353 | Isolated tHS basepair with bulges homologous IL_7RQB_012 | NA IL_38958.6* | ||
1/14/293:295, 1/14/343:347 | homologous IL_7RQB_013 | NA IL_69440.1* | ||
1/14/481:484, 1/14/496:509 | homologous IL_7RQB_014 | NA IL_60992.5* | ||
1/14/564:566, 1/14/575:577 | homologous IL_7RQB_015 | NA IL_01312.13* | ||
1/14/606:609A, 1/14/618A:622 | AAA cross-strand stack homologous IL_7RQB_016 | NA IL_56467.6* | ||
1/14/672:674, 1/14/806:808 | geometric IL_7RQB_017 | NA IL_01312.13* | ||
1/14/674:678, 1/14/799:806 | homologous IL_7RQB_018 | NA IL_17470.5* | ||
1/14/697:698, 1/14/763:765 | Single bulged A homologous IL_7RQB_019 | NA IL_80007.16* | ||
1/14/702:703, 1/14/728:730 | Single bulged G geometric IL_7RQB_020 | NA IL_59137.10* | ||
1/14/703:707, 1/14/724:728 | Triple sheared homologous IL_7RQB_021 | NA IL_56467.6* | ||
1/14/738:741, 1/14/756:758 | Major groove platform with extra cWW homologous IL_7RQB_022 | NA IL_95485.6* | ||
1/14/775:777, 1/14/787:791 | Multiple bulged bases homologous IL_7RQB_023 | NA IL_90991.5* | ||
1/14/837:838, 1/14/940:942 | Single stack bend homologous IL_7RQB_024 | NA IL_04038.4* | ||
1/14/844:846, 1/14/931:934 | Intercalated cWW geometric IL_7RQB_025 | NA IL_01312.13* | ||
1/14/846:850, 1/14/928:931 | homologous IL_7RQB_026 | NA IL_94165.1* | ||
1/14/858:862, 1/14/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge homologous IL_7RQB_027 | NA IL_83354.1* | ||
1/14/862:863, 1/14/913:915 | Minor groove platform geometric IL_4WF9_032 | NA IL_06437.11* | ||
1/14/864:868, 1/14/909:912 | C-loop homologous IL_7RQB_029 | NA IL_63596.4* | ||
1/14/870:872, 1/14/905:907 | Isolated cWS basepair homologous IL_7RQB_030 | NA IL_67621.5* | ||
1/14/952:954, 1/14/963:965 | homologous IL_7RQB_034 | NA IL_01312.13* | ||
1/14/994:996, 1/14/1159:1160 | Single bulged C homologous IL_7RQB_035 | NA IL_61258.10* | ||
1/14/998:1002, 1/14/1153:1157 | UAA/GAN homologous IL_7RQB_036 | NA IL_53523.5* | ||
1/14/1004:1011, 1/14/1150:1151 | NA | NA | ||
1/14/1011:1013, 1/14/1149:1150 | NA | NA | ||
1/14/1018:1024, 1/14/1140:1144 | homologous IL_7RQB_039 | NA IL_57188.3* | ||
1/14/1024:1030, 1/14/1124:1140 | geometric IL_7RQB_040 | NA IL_55786.1* | ||
1/14/1031:1034, 1/14/1121:1123 | Isolated non-canonical cWW with bulges homologous IL_7RQB_041 | NA IL_55456.1* | ||
1/14/1196:1198, 1/14/1247:1250 | Isolated cWS basepair homologous IL_7RQB_045 | NA IL_67621.5* | ||
1/14/1202:1206, 1/14/1240:1243 | homologous IL_7RQB_046 | NA IL_68574.2* | ||
1/14/1208:1215, 1/14/1234:1238 | Kink-turn homologous IL_7RQB_047 | NA IL_29549.9* | ||
1/14/1219:1221, 1/14/1229A:1230 | Single bulged A homologous IL_7RQB_048 | NA IL_80007.16* | ||
1/14/1262:1269, 1/14/2011:2017 | 8x7 Sarcin-Ricin; G-bulge homologous IL_7RQB_049 | NA IL_04346.5* | ||
1/14/1310:1313, 1/14/1603:1604 | Major groove platform; stack outside cWW homologous IL_7RQB_050 | NA IL_70995.6* | ||
1/14/1319:1324, 1/14/1330:1333 | C-loop with extra cWW pair geometric IL_4V88_408 | NA IL_51590.1* | ||
1/14/1351:1355, 1/14/1376:1380 | UAA/GAN homologous IL_7RQB_052 | NA IL_53523.5* | ||
1/14/1357:1361, 1/14/1370:1374 | tSH-tHW-tHS homologous IL_7RQB_053 | NA IL_39521.5* | ||
1/14/1415:1416, 1/14/1582:1587 | homologous IL_7RQB_054 | NA IL_67474.3* | ||
1/14/1417:1421, 1/14/1577:1581 | UAA/GAN homologous IL_7RQB_055 | NA IL_53523.5* | ||
1/14/1433:1435, 1/14/1557:1560 | Isolated tWW turn homologous IL_7RQB_056 | NA IL_54997.5* | ||
1/14/1437:1440, 1/14/1551:1555 | tSH-tHW homologous IL_7RQB_057 | NA IL_08757.3* | ||
1/14/1448:1449A, 1/14/1462:1463 | Single stack bend homologous IL_7RQB_058 | NA IL_31836.1* | ||
1/14/1450:1451, 1/14/1459:1461 | Single bulged A geometric IL_7RQB_059 | NA IL_80007.16* | ||
1/14/1469:1473, 1/14/1520:1523 | UAA/GAN homologous IL_7RQB_060 | NA IL_53523.5* | ||
1/14/1482:1483, 1/14/1506:1512 | homologous IL_7RQB_061 | NA IL_46464.1* | ||
1/14/1489:1491, 1/14/1499:1500 | Single bulged A homologous IL_7RQB_062 | NA IL_40508.4* | ||
1/14/1526:1530, 1/14/1541:1546 | homologous IL_7RQB_063 | NA IL_89836.1* | ||
1/14/1651:1656, 1/14/2004:2006 | homologous IL_7RQB_064 | NA IL_12566.2* | ||
1/14/1686:1691, 1/14/1696:1702 | tSH-tSH-tHH-tHS geometric IL_7RQB_068 | NA IL_66584.5* | ||
1/14/1770:1771, 1/14/1980:1982 | Single bulged A homologous IL_7RQB_069 | NA IL_80007.16* | ||
1/14/1798:1804, 1/14/1813:1821 | Kink-turn related homologous IL_7RQB_070 | NA IL_17069.3* | ||
1/14/1837:1840, 1/14/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket homologous IL_7RQB_071 | NA IL_31836.1* | ||
1/14/1841:1842, 1/14/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket geometric IL_5J7L_315 | NA IL_13730.12* | ||
1/14/1846:1849, 1/14/1893:1894 | Minor groove platform homologous IL_7RQB_073 | NA IL_06437.11* | ||
1/14/1851:1855, 1/14/1887:1891 | UAA/GAN with extra pair homologous IL_7RQB_074 | NA IL_34907.2* | ||
1/14/1856:1860, 1/14/1882:1886 | Triple sheared homologous IL_7RQB_075 | NA IL_56467.6* | ||
1/14/1933:1934, 1/14/1964:1967 | Multiple bulged bases geometric IL_7RQB_076 | NA IL_69632.1* | ||
1/14/1934:1945, 1/14/1961:1964 | geometric IL_4WF9_077 | NA IL_70285.1* | ||
1/14/2050:2052, 1/14/2617:2618 | Major groove platform homologous IL_7RQB_078 | NA IL_80663.10* | ||
1/14/2054:2057, 1/14/2611:2615 | NA | NA | ||
1/14/2067:2069, 1/14/2442:2443 | Single bulged U homologous IL_7RQB_080 | NA IL_83039.11* | ||
1/14/2070:2071, 1/14/2438:2441 | Minor groove platform homologous IL_7RQB_081 | NA IL_06437.11* | ||
1/14/2081:2083, 1/14/2236:2239 | Isolated tHS basepair with bulges homologous IL_7RQB_082 | NA IL_38958.6* | ||
1/14/2085:2087, 1/14/2232:2234 | homologous IL_7RQB_083 | NA IL_01312.13* | ||
1/14/2106:2110, 1/14/2179:2183 | geometric IL_5BTM_001 | NA IL_05867.1* | ||
1/14/2121:2127, 1/14/2161:2177 | NA | NA | ||
1/14/2127:2137, 1/14/2155:2161 | NA | NA | ||
1/14/2137:2140, 1/14/2151:2155 | NA | NA | ||
1/14/2297:2299, 1/14/2317:2321 | Isolated tHS basepair with bulges homologous IL_7RQB_088 | NA IL_38958.6* | ||
1/14/2350:2353, 1/14/2364:2367 | Double sheared homologous IL_7RQB_089 | NA IL_09705.7* | ||
1/14/2401:2403, 1/14/2414:2415 | Minor groove platform geometric IL_7TZS_003 | NA IL_06437.11* | ||
1/14/2453:2454, 1/14/2498:2500 | Single stack bend geometric IL_7RQB_091 | NA IL_04038.4* | ||
1/14/2454:2455, 1/14/2496:2498 | Major groove platform homologous IL_7RQB_092 | NA IL_80663.10* | ||
1/14/2456:2459, 1/14/2493:2495 | Major groove platform with extra pair geometric IL_7RQB_093 | NA IL_87630.5* | ||
1/14/2459:2461, 1/14/2489:2493 | Major groove minor groove platform with extra cWW homologous IL_7RQB_094 | NA IL_96042.4* | ||
1/14/2466:2470, 1/14/2480:2484 | Triple sheared homologous IL_7RQB_095 | NA IL_56467.6* | ||
1/14/2507:2508, 1/14/2580:2582 | Major groove platform homologous IL_7RQB_096 | NA IL_02060.4* | ||
1/14/2510:2512, 1/14/2574:2578 | Isolated non-canonical cWW with bulges geometric IL_7RQB_097 | NA IL_01312.13* | ||