6XA1 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6XA1_002 | 1/Bv/31:39 | No text annotation Not in a motif group | ||
| HL_6XA1_003 | 1/Bv/53:61 | No text annotation Not in a motif group | homologous HL_1QF6_003 NA | |
| HL_6XA1_004 | 1/L5/37:44 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.2 | |
| HL_6XA1_005 | 1/L5/68:73 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_6XA1_006 | 1/L5/89:95 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_6XA1_007 | 1/L5/131:134 | No text annotation Not in a motif group | ||
| HL_6XA1_008 | 1/L5/201:208 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_6XA1_009 | 1/L5/219:223 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_6XA1_010 | 1/L5/227:235 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.9 | |
| HL_6XA1_011 | 1/L5/280:289 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_6XA1_012 | 1/L5/305:314 | No text annotation Not in a motif group | geometric HL_4QLM_002 HL_12078.2 | |
| HL_6XA1_013 | 1/L5/358:365 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_6XA1_014 | 1/L5/383:390 | No text annotation Not in a motif group | geometric HL_4WF9_041 HL_49288.1 | |
| HL_6XA1_015 | 1/L5/503:638 | No text annotation Not in a motif group | ||
| HL_6XA1_016 | 1/L5/1165:1170 | No text annotation Not in a motif group | geometric HL_4TUW_002 HL_28980.1 | |
| HL_6XA1_017 | 1/L5/1302:1315 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_6XA1_018 | 1/L5/1350:1361 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_6XA1_019 | 1/L5/1376:1381 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.2 | |
| HL_6XA1_020 | 1/L5/1388:1403 | No text annotation Not in a motif group | ||
| HL_6XA1_021 | 1/L5/1423:1435 | No text annotation Not in a motif group | ||
| HL_6XA1_022 | 1/L5/1467:1471 | No text annotation Not in a motif group | ||
| HL_6XA1_023 | 1/L5/1548:1553 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.2 | |
| HL_6XA1_024 | 1/L5/1580:1589 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.6 | |
| HL_6XA1_025 | 1/L5/1614:1622 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_6XA1_026 | 1/L5/1662:1667 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_94803.2 | |
| HL_6XA1_027 | 1/L5/1803:1810 | No text annotation Not in a motif group | homologous HL_5TBW_024 HL_71554.2 | |
| HL_6XA1_028 | 1/L5/1851:1857 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_42097.2 | |
| HL_6XA1_029 | 1/L5/1873:1880 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_6XA1_030 | 1/L5/1944:2013 | No text annotation Not in a motif group | ||
| HL_6XA1_031 | 1/L5/2244:2248 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_98426.1 | |
| HL_6XA1_032 | 1/L5/2304:2309 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.2 | |
| HL_6XA1_033 | 1/L5/2363:2371 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_89380.2 | |
| HL_6XA1_034 | 1/L5/2407:2413 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_6XA1_035 | 1/L5/2445:2450 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_76539.2 | |
| HL_6XA1_036 | 1/L5/2469:2483 | No text annotation Not in a motif group | ||
| HL_6XA1_037 | 1/L5/2510:2519 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_6XA1_038 | 1/L5/2548:2553 | GNRA Not in a motif group | geometric HL_3AM1_003 HL_42097.2 | |
| HL_6XA1_039 | 1/L5/2565:2570 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_42097.2 | |
| HL_6XA1_040 | 1/L5/2610:2620 | No text annotation Not in a motif group | ||
| HL_6XA1_041 | 1/L5/2651:2657 | No text annotation Not in a motif group | homologous HL_8C3A_038 HL_86373.2 | |
| HL_6XA1_042 | 1/L5/2691:2699 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
| HL_6XA1_043 | 1/L5/2725:2729 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.1 | |
| HL_6XA1_044 | 1/L5/2779:2786 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.2 | |
| HL_6XA1_045 | 1/L5/2797:2803 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.2 | |
| HL_6XA1_046 | 1/L5/2859:2864 | UNCG Not in a motif group | geometric HL_4V9F_044 HL_03562.2 | |
| HL_6XA1_047 | 1/L5/2894:3567 | No text annotation Not in a motif group | ||
| HL_6XA1_048 | 1/L5/3593:3597 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_28980.1 | |
| HL_6XA1_049 | 1/L5/3617:3629 | No text annotation Not in a motif group | geometric HL_7A0S_045 HL_43667.1 | |
| HL_6XA1_050 | 1/L5/3647:3653 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.2 | |
| HL_6XA1_051 | 1/L5/3701:3710 | No text annotation Not in a motif group | ||
| HL_6XA1_052 | 1/L5/3736:3746 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_6XA1_053 | 1/L5/3775:3783 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_51824.1 | |
| HL_6XA1_054 | 1/L5/3852:3861 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_6XA1_055 | 1/L5/3925:4045 | No text annotation Not in a motif group | ||
| HL_6XA1_056 | 1/L5/4163:4171 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_53171.2 | |
| HL_6XA1_057 | 1/L5/4180:4192 | No text annotation Not in a motif group | ||
| HL_6XA1_058 | 1/L5/4220:4228 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_6XA1_059 | 1/L5/4240:4247 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.2 | |
| HL_6XA1_060 | 1/L5/4271:4279 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_6XA1_061 | 1/L5/4291:4296 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_42097.2 | |
| HL_6XA1_062 | 1/L5/4322:4332 | No text annotation Not in a motif group | homologous HL_5TBW_060 HL_96598.1 | |
| HL_6XA1_063 | 1/L5/4387:4395 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_6XA1_064 | 1/L5/4444:4451 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_91104.1 | |
| HL_6XA1_065 | 1/L5/4467:4473 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_43656.2 | |
| HL_6XA1_066 | 1/L5/4510:4515 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.2 | |
| HL_6XA1_067 | 1/L5/4573:4578 | GNRA Not in a motif group | geometric HL_5J7L_197 HL_42097.2 | |
| HL_6XA1_068 | 1/L5/4616:4621 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_6XA1_069 | 1/L5/4658:4672 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_6XA1_070 | 1/L5/4872:4879 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_6XA1_071 | 1/L5/4940:4948 | No text annotation Not in a motif group | geometric HL_5J7L_201 HL_27930.1 | |
| HL_6XA1_072 | 1/L5/4986:4993 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6XA1_073 | 1/L7/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_6XA1_074 | 1/L7/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.2 | |
| HL_6XA1_075 | 1/L8/47:56 | No text annotation Not in a motif group | geometric HL_4V9F_001 HL_99167.1 | |
| HL_6XA1_076 | 1/L8/68:90 | No text annotation Not in a motif group | ||
| HL_6XA1_077 | 1/L8/107:112 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_6XA1_078 | 1/L8/122:128 | No text annotation Not in a motif group | ||
| HL_6XA1_079 | 1/S2/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6XA1_080 | 1/S2/69:80 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_6XA1_081 | 1/S2/156:162 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_6XA1_082 | 1/S2/197:202 | GNRA Not in a motif group | geometric HL_3RG5_007 HL_42097.2 | |
| HL_6XA1_083 | 1/S2/288:295 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V88_191 HL_27930.1 | |
| HL_6XA1_084 | 1/S2/322:329 | No text annotation Not in a motif group | ||
| HL_6XA1_085 | 1/S2/377:387 | No text annotation Not in a motif group | ||
| HL_6XA1_086 | 1/S2/416:421 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6XA1_087 | 1/S2/441:452 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6XA1_088 | 1/S2/459:470 | No text annotation Not in a motif group | ||
| HL_6XA1_089 | 1/S2/498:504 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6XA1_090 | 1/S2/534:550 | No text annotation Not in a motif group | ||
| HL_6XA1_091 | 1/S2/569:581 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 | |
| HL_6XA1_092 | 1/S2/618:623 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_6XA1_093 | 1/S2/820:828 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_6XA1_094 | 1/S2/833:841 | No text annotation Not in a motif group | ||
| HL_6XA1_095 | 1/S2/956:967 | No text annotation Not in a motif group | ||
| HL_6XA1_096 | 1/S2/994:999 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6XA1_097 | 1/S2/1054:1064 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_6XA1_098 | 1/S2/1113:1120 | No text annotation Not in a motif group | ||
| HL_6XA1_099 | 1/S2/1141:1146 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.2 | |
| HL_6XA1_100 | 1/S2/1178:1183 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.2 | |
| HL_6XA1_101 | 1/S2/1245:1254 | No text annotation Not in a motif group | ||
| HL_6XA1_102 | 1/S2/1295:1304 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_6XA1_103 | 1/S2/1353:1358 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.2 | |
| HL_6XA1_104 | 1/S2/1366:1373 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_6XA1_105 | 1/S2/1417:1422 | No text annotation Not in a motif group | ||
| HL_6XA1_106 | 1/S2/1460:1466 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.2 | |
| HL_6XA1_107 | 1/S2/1565:1570 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.2 | |
| HL_6XA1_108 | 1/S2/1613:1626 | No text annotation Not in a motif group | ||
| HL_6XA1_109 | 1/S2/1658:1666 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_6XA1_110 | 1/S2/1750:1784 | No text annotation Not in a motif group | ||
| HL_6XA1_111 | 1/S2/1847:1852 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6XA1_001 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6XA1_001 | 1/L5/6:7, 1/L8/149:151 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_6XA1_002 | 1/L5/12:14, 1/L8/143:144 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.14 | |
| IL_6XA1_003 | 1/L5/16:18, 1/L8/139:141 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_6XA1_004 | 1/L5/26:27, 1/L5/55:57 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_76488.2 | |
| IL_6XA1_005 | 1/L5/30:37, 1/L5/44:52 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_35728.2 | |
| IL_6XA1_006 | 1/L5/81:88, 1/L5/96:102 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_6XA1_007 | 1/L5/118:121, 1/L5/149:150 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
| IL_6XA1_008 | 1/L5/121:122, 1/L5/144:149 | No text annotation Not in a motif group | geometric IL_4V9F_009 IL_19724.2 | |
| IL_6XA1_009 | 1/L5/125:126, 1/L5/139:141 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_6XA1_010 | 1/L5/166:170, 1/L5/254:257 | No text annotation Not in a motif group | ||
| IL_6XA1_011 | 1/L5/171:186, 1/L5/249:253 | No text annotation Not in a motif group | ||
| IL_6XA1_012 | 1/L5/192:193, 1/L5/241:243 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_6XA1_013 | 1/L5/196:198, 1/L5/211:212 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.14 | |
| IL_6XA1_014 | 1/L5/330:333, 1/L8/32:33 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_005 IL_88739.1 | |
| IL_6XA1_015 | 1/L5/339:341, 1/L8/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.3 | |
| IL_6XA1_016 | 1/L5/378:381, 1/L5/392:405 | No text annotation Not in a motif group | geometric IL_5TBW_014 IL_60992.6 | |
| IL_6XA1_017 | 1/L5/381:383, 1/L5/390:392 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_6XA1_018 | 1/L5/406:412, 1/L8/13:19 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5J7L_245 IL_66414.6 | |
| IL_6XA1_019 | 1/L5/434:437, 1/L5/1287:1291 | No text annotation Not in a motif group | ||
| IL_6XA1_020 | 1/L5/439:441, 1/L5/1284:1285 | No text annotation Not in a motif group | ||
| IL_6XA1_021 | 1/L5/450:451, 1/L5/686:688 | Single bulged C Not in a motif group | geometric IL_3W3S_001 IL_61258.12 | |
| IL_6XA1_022 | 1/L5/453:455, 1/L5/682:684 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_6XA1_023 | 1/L5/457:463, 1/L5/673:680 | No text annotation Not in a motif group | ||
| IL_6XA1_024 | 1/L5/473:476, 1/L5/662:663 | Multiple bulged bases Not in a motif group | geometric IL_5WTK_001 IL_16396.2 | |
| IL_6XA1_025 | 1/L5/499:501, 1/L5/640:641 | Single bulged A Not in a motif group | geometric IL_6WPI_001 IL_37497.3 | |
| IL_6XA1_026 | 1/L5/700:701, 1/L5/1273:1275 | Single bulged G Not in a motif group | geometric IL_4LFB_036 IL_00225.3 | |
| IL_6XA1_027 | 1/L5/714:715, 1/L5/929:932 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
| IL_6XA1_028 | 1/L5/718:722, 1/L5/925:926 | No text annotation Not in a motif group | ||
| IL_6XA1_029 | 1/L5/723:726, 1/L5/915:924 | No text annotation Not in a motif group | ||
| IL_6XA1_030 | 1/L5/728:731, 1/L5/912:913 | No text annotation Not in a motif group | ||
| IL_6XA1_031 | 1/L5/731:733, 1/L5/909:912 | No text annotation Not in a motif group | ||
| IL_6XA1_032 | 1/L5/736:743, 1/L5/898:906 | No text annotation Not in a motif group | geometric IL_5TBW_020 IL_07703.1 | |
| IL_6XA1_033 | 1/L5/1060:1061, 1/L5/1224:1226 | Single bulged A Not in a motif group | geometric IL_2VPL_002 IL_37497.3 | |
| IL_6XA1_034 | 1/L5/1064:1066, 1/L5/1207:1221 | No text annotation Not in a motif group | ||
| IL_6XA1_035 | 1/L5/1069:1071, 1/L5/1200:1204 | Isolated cWS basepair Not in a motif group | geometric IL_4WF9_034 IL_52767.2 | |
| IL_6XA1_036 | 1/L5/1073:1074, 1/L5/1196:1198 | Single bulged C Not in a motif group | geometric IL_3W3S_001 IL_61258.12 | |
| IL_6XA1_037 | 1/L5/1080:1081, 1/L5/1188:1190 | No text annotation Not in a motif group | ||
| IL_6XA1_038 | 1/L5/1081:1083, 1/L5/1186:1188 | No text annotation Not in a motif group | geometric IL_4WF9_083 IL_95997.1 | |
| IL_6XA1_039 | 1/L5/1086:1155, 1/L5/1180:1183 | No text annotation Not in a motif group | ||
| IL_6XA1_040 | 1/L5/1160:1162, 1/L5/1173:1175 | Isolated cWH basepair Not in a motif group | geometric IL_3W3S_003 IL_51629.2 | |
| IL_6XA1_041 | 1/L5/1231:1232, 1/L5/1252:1254 | Single bulged G Not in a motif group | geometric IL_4V88_442 IL_00225.3 | |
| IL_6XA1_042 | 1/L5/1344:1347, 1/L5/1366:1369 | No text annotation Not in a motif group | ||
| IL_6XA1_043 | 1/L5/1347:1348, 1/L5/1363:1366 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_003 IL_69996.1 | |
| IL_6XA1_044 | 1/L5/1412:1416, 1/L5/1442:1447 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_6XA1_045 | 1/L5/1418:1421, 1/L5/1437:1440 | Double sheared Not in a motif group | geometric IL_4XWF_001 IL_09705.9 | |
| IL_6XA1_046 | 1/L5/1454:1455, 1/L5/1483:1485 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.3 | |
| IL_6XA1_047 | 1/L5/1461:1463, 1/L5/1476:1477 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_76488.2 | |
| IL_6XA1_048 | 1/L5/1466:1467, 1/L5/1471:1473 | Single bulged C Not in a motif group | geometric IL_5J7L_311 IL_61258.12 | |
| IL_6XA1_049 | 1/L5/1507:1513, 1/L5/1635:1644 | No text annotation Not in a motif group | ||
| IL_6XA1_050 | 1/L5/1532:1533, 1/L5/1599:1601 | Single bulged A Not in a motif group | geometric IL_4WF9_022 IL_37497.3 | |
| IL_6XA1_051 | 1/L5/1537:1538, 1/L5/1563:1565 | No text annotation Not in a motif group | homologous IL_8C3A_032 IL_00225.3 | |
| IL_6XA1_052 | 1/L5/1538:1542, 1/L5/1559:1563 | Triple sheared Not in a motif group | geometric IL_4V9F_027 IL_56467.8 | |
| IL_6XA1_053 | 1/L5/1573:1576, 1/L5/1592:1594 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_6XA1_054 | 1/L5/1577:1579, 1/L5/1590:1591 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.14 | |
| IL_6XA1_055 | 1/L5/1611:1613, 1/L5/1623:1627 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.6 | |
| IL_6XA1_056 | 1/L5/1658:1660, 1/L5/1669:1671 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_6XA1_057 | 1/L5/1673:1675, 1/L5/1835:1838 | No text annotation Not in a motif group | ||
| IL_6XA1_058 | 1/L5/1681:1708, 1/L5/1828:1829 | No text annotation Not in a motif group | ||
| IL_6XA1_059 | 1/L5/1710:1712, 1/L5/1825:1826 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.3 | |
| IL_6XA1_060 | 1/L5/1719:1725, 1/L5/1777:1784 | No text annotation Not in a motif group | ||
| IL_6XA1_061 | 1/L5/1726:1732, 1/L5/1772:1776 | No text annotation Not in a motif group | geometric IL_4V9F_035 IL_21121.1 | |
| IL_6XA1_062 | 1/L5/1732:1738, 1/L5/1766:1772 | No text annotation Not in a motif group | ||
| IL_6XA1_063 | 1/L5/1740:1746, 1/L5/1760:1764 | No text annotation Not in a motif group | ||
| IL_6XA1_064 | 1/L5/1801:1803, 1/L5/1810:1811 | Single bulged G Not in a motif group | geometric IL_4V88_442 IL_00225.3 | |
| IL_6XA1_065 | 1/L5/1845:1848, 1/L5/1860:1863 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1JID_002 IL_30621.3 | |
| IL_6XA1_066 | 1/L5/1892:1896, 1/L5/2054:2058 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.2 | |
| IL_6XA1_067 | 1/L5/1898:1905, 1/L5/2051:2052 | No text annotation Not in a motif group | homologous IL_8C3A_052 IL_15861.7 | |
| IL_6XA1_068 | 1/L5/1905:1907, 1/L5/2050:2051 | No text annotation Not in a motif group | ||
| IL_6XA1_069 | 1/L5/1907:1909, 1/L5/2049:2050 | No text annotation Not in a motif group | ||
| IL_6XA1_070 | 1/L5/1913:1920, 1/L5/2040:2045 | No text annotation Not in a motif group | homologous IL_8C3A_054 IL_27086.1 | |
| IL_6XA1_071 | 1/L5/1920:1931, 1/L5/2025:2040 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_6XA1_072 | 1/L5/1933:1935, 1/L5/2022:2023 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.14 | |
| IL_6XA1_073 | 1/L5/2070:2072, 1/L5/2259:2260 | Single bulged C Not in a motif group | geometric IL_4C7O_003 IL_61258.12 | |
| IL_6XA1_074 | 1/L5/2277:2279, 1/L5/2329:2332 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_6XA1_075 | 1/L5/2286:2288, 1/L5/2321:2322 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.3 | |
| IL_6XA1_076 | 1/L5/2289:2296, 1/L5/2316:2320 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_6XA1_077 | 1/L5/2299:2301, 1/L5/2312:2313 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.3 | |
| IL_6XA1_078 | 1/L5/2393:2396, 1/L5/2770:2771 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V9F_050 IL_50694.2 | |
| IL_6XA1_079 | 1/L5/2401:2406, 1/L5/2414:2417 | No text annotation Not in a motif group | homologous IL_8C3A_066 IL_93630.2 | |
| IL_6XA1_080 | 1/L5/2433:2437, 1/L5/2496:2501 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_6XA1_081 | 1/L5/2464:2466, 1/L5/2486:2487 | Minor groove platform Not in a motif group | geometric IL_6DLR_003 IL_42622.2 | |
| IL_6XA1_082 | 1/L5/2529:2534, 1/L5/2759:2761 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_1U6B_001 IL_82068.2 | |
| IL_6XA1_083 | 1/L5/2536:2537, 1/L5/2755:2757 | Single bulged U Not in a motif group | geometric IL_2A64_002 IL_83039.14 | |
| IL_6XA1_084 | 1/L5/2576:2580, 1/L5/2739:2743 | Triple sheared Not in a motif group | geometric IL_7RQB_075 IL_56467.8 | |
| IL_6XA1_085 | 1/L5/2600:2601, 1/L5/2711:2713 | Single bulged A Not in a motif group | geometric IL_3MJA_001 IL_37497.3 | |
| IL_6XA1_086 | 1/L5/2601:2602, 1/L5/2709:2711 | Single stack bend Not in a motif group | homologous IL_5TBW_070 IL_76488.2 | |
| IL_6XA1_087 | 1/L5/2633:2635, 1/L5/2672:2675 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_076 IL_38958.7 | |
| IL_6XA1_088 | 1/L5/2638:2640, 1/L5/2668:2669 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_00225.3 | |
| IL_6XA1_089 | 1/L5/2643:2649, 1/L5/2659:2665 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_6XA1_090 | 1/L5/2818:2825, 1/L5/3829:3833 | No text annotation Not in a motif group | ||
| IL_6XA1_091 | 1/L5/2830:2833, 1/L5/3821:3824 | No text annotation Not in a motif group | ||
| IL_6XA1_092 | 1/L5/2833:2837, 1/L5/3819:3821 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_6XA1_093 | 1/L5/2837:2842, 1/L5/3816:3819 | Intercalated tWH Not in a motif group | geometric IL_4V9F_062 IL_82842.2 | |
| IL_6XA1_094 | 1/L5/2854:2859, 1/L5/2864:2870 | No text annotation Not in a motif group | homologous IL_8C3A_084 IL_65969.2 | |
| IL_6XA1_095 | 1/L5/2876:2878, 1/L5/3589:3591 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_6XA1_096 | 1/L5/2883:2884, 1/L5/3581:3584 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_6XA1_097 | 1/L5/2888:2894, 1/L5/3567:3577 | No text annotation Not in a motif group | ||
| IL_6XA1_098 | 1/L5/3605:3607, 1/L5/3812:3814 | No text annotation Not in a motif group | geometric IL_5C5W_002 IL_95997.1 | |
| IL_6XA1_099 | 1/L5/3609:3611, 1/L5/3808:3810 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_6XA1_100 | 1/L5/3611:3612, 1/L5/3806:3808 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.3 | |
| IL_6XA1_101 | 1/L5/3639:3644, 1/L5/3656:3663 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_6XA1_102 | 1/L5/3673:3675, 1/L5/3798:3800 | Stack and bulge Not in a motif group | geometric IL_2ET8_001 IL_82842.2 | |
| IL_6XA1_103 | 1/L5/3679:3682, 1/L5/3728:3729 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_88739.1 | |
| IL_6XA1_104 | 1/L5/3683:3684, 1/L5/3724:3727 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_6XA1_105 | 1/L5/3684:3686, 1/L5/3722:3724 | No text annotation Not in a motif group | geometric IL_2ZNI_001 IL_51629.2 | |
| IL_6XA1_106 | 1/L5/3687:3689, 1/L5/3720:3721 | No text annotation Not in a motif group | homologous IL_8C3A_091 IL_76488.2 | |
| IL_6XA1_107 | 1/L5/3689:3693, 1/L5/3718:3720 | Multiple bulged bases, near cWW Not in a motif group | geometric IL_5M0H_002 IL_51629.2 | |
| IL_6XA1_108 | 1/L5/3693:3700, 1/L5/3711:3718 | No text annotation Not in a motif group | ||
| IL_6XA1_109 | 1/L5/3732:3734, 1/L5/3748:3750 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_6XA1_110 | 1/L5/3734:3736, 1/L5/3746:3748 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_6XA1_111 | 1/L5/3759:3760, 1/L5/3790:3793 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_089 IL_59677.2 | |
| IL_6XA1_112 | 1/L5/3760:3772, 1/L5/3786:3790 | No text annotation Not in a motif group | homologous IL_5TBW_090 IL_81589.2 | |
| IL_6XA1_113 | 1/L5/3874:3877, 1/L5/4533:4535 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_6XA1_114 | 1/L5/3877:3879, 1/L5/4531:4533 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_6XA1_115 | 1/L5/3879:3881, 1/L5/4528:4531 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_54678.5 | |
| IL_6XA1_116 | 1/L5/3892:3894, 1/L5/4358:4359 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.14 | |
| IL_6XA1_117 | 1/L5/3895:3896, 1/L5/4354:4357 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_6XA1_118 | 1/L5/3903:3905, 1/L5/4155:4157 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_6XA1_119 | 1/L5/3906:3908, 1/L5/4151:4154 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_6XA1_120 | 1/L5/4060:4066, 1/L5/4131:4134 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_6XA1_121 | 1/L5/4069:4106, 1/L5/4125:4128 | No text annotation Not in a motif group | ||
| IL_6XA1_122 | 1/L5/4161:4162, 1/L5/4172:4174 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.3 | |
| IL_6XA1_123 | 1/L5/4213:4215, 1/L5/4233:4237 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5TBW_099 IL_38958.7 | |
| IL_6XA1_124 | 1/L5/4261:4264, 1/L5/4286:4288 | Decoding loop related Not in a motif group | geometric IL_2O3X_003 IL_82842.2 | |
| IL_6XA1_125 | 1/L5/4265:4270, 1/L5/4280:4285 | No text annotation Not in a motif group | ||
| IL_6XA1_126 | 1/L5/4317:4320, 1/L5/4334:4335 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_6XA1_127 | 1/L5/4370:4375, 1/L5/4409:4414 | No text annotation Not in a motif group | ||
| IL_6XA1_128 | 1/L5/4375:4378, 1/L5/4404:4409 | No text annotation Not in a motif group | ||
| IL_6XA1_129 | 1/L5/4380:4382, 1/L5/4400:4402 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_6XA1_130 | 1/L5/4382:4386, 1/L5/4396:4400 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_6XA1_131 | 1/L5/4423:4424, 1/L5/4496:4498 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.2 | |
| IL_6XA1_132 | 1/L5/4425:4428, 1/L5/4490:4495 | No text annotation Not in a motif group | ||
| IL_6XA1_133 | 1/L5/4428:4429, 1/L5/4487:4490 | No text annotation Not in a motif group | homologous IL_8C3A_117 IL_71530.2 | |
| IL_6XA1_134 | 1/L5/4436:4438, 1/L5/4459:4461 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_6XA1_135 | 1/L5/4438:4440, 1/L5/4455:4459 | No text annotation Not in a motif group | ||
| IL_6XA1_136 | 1/L5/4440:4442, 1/L5/4453:4455 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_6XA1_137 | 1/L5/4463:4465, 1/L5/4475:4477 | No text annotation Not in a motif group | geometric IL_4V88_444 IL_95997.1 | |
| IL_6XA1_138 | 1/L5/4465:4467, 1/L5/4473:4475 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_6XA1_139 | 1/L5/4505:4507, 1/L5/4519:4521 | No text annotation Not in a motif group | homologous IL_8C3A_121 IL_95997.1 | |
| IL_6XA1_140 | 1/L5/4507:4508, 1/L5/4517:4519 | Single bulged A Not in a motif group | geometric IL_5J7L_344 IL_37497.3 | |
| IL_6XA1_141 | 1/L5/4545:4547, 1/L5/4696:4698 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_6XA1_142 | 1/L5/4548:4550, 1/L5/4693:4695 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_6XA1_143 | 1/L5/4550:4552, 1/L5/4691:4693 | Isolated cWH basepair Not in a motif group | geometric IL_4E5C_001 IL_51629.2 | |
| IL_6XA1_144 | 1/L5/4552:4555, 1/L5/4687:4691 | Double sheared Not in a motif group | geometric IL_6E7L_002 IL_10484.1 | |
| IL_6XA1_145 | 1/L5/4566:4573, 1/L5/4578:4584 | No text annotation Not in a motif group | homologous IL_8C3A_125 IL_04346.7 | |
| IL_6XA1_146 | 1/L5/4592:4599, 1/L5/4639:4645 | No text annotation Not in a motif group | ||
| IL_6XA1_147 | 1/L5/4602:4608, 1/L5/4631:4636 | Triple sheared related Not in a motif group | geometric IL_5J7L_063 IL_64879.2 | |
| IL_6XA1_148 | 1/L5/4608:4610, 1/L5/4629:4631 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_012 IL_51629.2 | |
| IL_6XA1_149 | 1/L5/4611:4612, 1/L5/4625:4628 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_6XA1_150 | 1/L5/4650:4655, 1/L5/4675:4680 | UAA/GAN with extra cWW Not in a motif group | geometric IL_5J7L_350 IL_49767.5 | |
| IL_6XA1_151 | 1/L5/4709:4711, 1/L5/4923:4924 | No text annotation Not in a motif group | ||
| IL_6XA1_152 | 1/L5/4712:4715, 1/L5/4919:4922 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5J7L_283 IL_30621.3 | |
| IL_6XA1_153 | 1/L5/4718:4720, 1/L5/4913:4916 | No text annotation Not in a motif group | ||
| IL_6XA1_154 | 1/L5/4725:4734, 1/L5/4834:4842 | No text annotation Not in a motif group | ||
| IL_6XA1_155 | 1/L5/4738:4740, 1/L5/4828:4830 | No text annotation Not in a motif group | geometric IL_3RG5_002 IL_95997.1 | |
| IL_6XA1_156 | 1/L5/4850:4854, 1/L5/4895:4899 | No text annotation Not in a motif group | ||
| IL_6XA1_157 | 1/L5/4856:4861, 1/L5/4889:4893 | No text annotation Not in a motif group | ||
| IL_6XA1_158 | 1/L5/4864:4866, 1/L5/4885:4886 | Single bulged C Not in a motif group | geometric IL_5TBW_069 IL_61258.12 | |
| IL_6XA1_159 | 1/L5/4957:4959, 1/L5/5022:5024 | No text annotation Not in a motif group | geometric IL_3IVK_002 IL_95997.1 | |
| IL_6XA1_160 | 1/L5/4961:4962, 1/L5/5018:5020 | No text annotation Not in a motif group | ||
| IL_6XA1_161 | 1/L5/4965:4967, 1/L5/5010:5015 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.2 | |
| IL_6XA1_162 | 1/L5/4968:4974, 1/L5/5004:5009 | No text annotation Not in a motif group | ||
| IL_6XA1_163 | 1/L5/4974:4976, 1/L5/5002:5004 | Stack and bulge Not in a motif group | geometric IL_2O3X_001 IL_82842.2 | |
| IL_6XA1_164 | 1/L5/4977:4982, 1/L5/4997:5001 | No text annotation Not in a motif group | ||
| IL_6XA1_165 | 1/L7/15:16, 1/L7/62:64 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.3 | |
| IL_6XA1_166 | 1/L7/21:27, 1/L7/52:57 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_6XA1_167 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_6XA1_168 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_6XA1_169 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_6XA1_170 | 1/L7/79:81, 1/L7/95:97 | No text annotation Not in a motif group | geometric IL_4V88_470 IL_51629.2 | |
| IL_6XA1_171 | 1/L7/82:85, 1/L7/92:94 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_6XA1_172 | 1/L8/64:67, 1/L8/91:95 | No text annotation Not in a motif group | ||
| IL_6XA1_173 | 1/S2/22:26, 1/S2/648:652 | No text annotation Not in a motif group | ||
| IL_6XA1_174 | 1/S2/26:28, 1/S2/646:648 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_6XA1_175 | 1/S2/37:40, 1/S2/514:518 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.9 | |
| IL_6XA1_176 | 1/S2/41:47, 1/S2/479:481 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_6XA1_177 | 1/S2/49:51, 1/S2/476:477 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6XA1_178 | 1/S2/57:62, 1/S2/86:88 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6XA1_179 | 1/S2/63:68, 1/S2/81:85 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_6XA1_180 | 1/S2/108:110, 1/S2/351:353 | Stack and bulge Not in a motif group | geometric IL_2O3X_001 IL_82842.2 | |
| IL_6XA1_181 | 1/S2/110:112, 1/S2/349:351 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_6XA1_182 | 1/S2/112:115, 1/S2/348:349 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_6XA1_183 | 1/S2/115:122, 1/S2/342:348 | No text annotation Not in a motif group | ||
| IL_6XA1_184 | 1/S2/123:124, 1/S2/339:341 | Single stack bend Not in a motif group | geometric IL_7RQB_058 IL_76488.2 | |
| IL_6XA1_185 | 1/S2/130:144, 1/S2/175:182 | No text annotation Not in a motif group | ||
| IL_6XA1_186 | 1/S2/144:151, 1/S2/167:175 | No text annotation Not in a motif group | ||
| IL_6XA1_187 | 1/S2/151:154, 1/S2/164:167 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_30621.3 | |
| IL_6XA1_188 | 1/S2/188:192, 1/S2/207:211 | Triple sheared Not in a motif group | geometric IL_4WFL_001 IL_56467.8 | |
| IL_6XA1_189 | 1/S2/216:219, 1/S2/302:309 | No text annotation Not in a motif group | ||
| IL_6XA1_190 | 1/S2/223:288, 1/S2/295:298 | No text annotation Not in a motif group | ||
| IL_6XA1_191 | 1/S2/312:314, 1/S2/336:337 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.3 | |
| IL_6XA1_192 | 1/S2/317:320, 1/S2/331:333 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_6XA1_193 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6XA1_194 | 1/S2/366:371, 1/S2/393:394 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6XA1_195 | 1/S2/411:413, 1/S2/424:429 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6XA1_196 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6XA1_197 | 1/S2/490:495, 1/S2/508:510 | No text annotation Not in a motif group | ||
| IL_6XA1_198 | 1/S2/495:496, 1/S2/506:508 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.3 | |
| IL_6XA1_199 | 1/S2/529:530, 1/S2/554:556 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.3 | |
| IL_6XA1_200 | 1/S2/563:565, 1/S2/585:592 | No text annotation Not in a motif group | homologous IL_8C3A_420 IL_55023.1 | |
| IL_6XA1_201 | 1/S2/566:569, 1/S2/581:584 | tSH-tHW Not in a motif group | geometric IL_5UNE_005 IL_21270.1 | |
| IL_6XA1_202 | 1/S2/599:606, 1/S2/636:637 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_6XA1_203 | 1/S2/606:608, 1/S2/635:636 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.14 | |
| IL_6XA1_204 | 1/S2/608:610, 1/S2/633:635 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_6XA1_205 | 1/S2/611:617, 1/S2/624:632 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_6XA1_206 | 1/S2/663:665, 1/S2/1162:1164 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_6XA1_207 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_6XA1_208 | 1/S2/673:675, 1/S2/1030:1032 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6XA1_209 | 1/S2/676:680, 1/S2/1025:1029 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6XA1_210 | 1/S2/800:803, 1/S2/860:865 | No text annotation Not in a motif group | ||
| IL_6XA1_211 | 1/S2/805:807, 1/S2/856:858 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_6XA1_212 | 1/S2/807:816, 1/S2/848:856 | No text annotation Not in a motif group | ||
| IL_6XA1_213 | 1/S2/874:876, 1/S2/910:912 | No text annotation Not in a motif group | geometric IL_5Y85_006 IL_95997.1 | |
| IL_6XA1_214 | 1/S2/877:879, 1/S2/907:909 | No text annotation Not in a motif group | geometric IL_5TBW_042 IL_95997.1 | |
| IL_6XA1_215 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_6XA1_216 | 1/S2/924:927, 1/S2/1014:1018 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.3 | |
| IL_6XA1_217 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.3 | |
| IL_6XA1_218 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.3 | |
| IL_6XA1_219 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.3 | |
| IL_6XA1_220 | 1/S2/952:956, 1/S2/967:974 | Kink-turn Not in a motif group | geometric IL_4V88_434 IL_45067.2 | |
| IL_6XA1_221 | 1/S2/1042:1047, 1/S2/1071:1073 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_6XA1_222 | 1/S2/1047:1051, 1/S2/1067:1071 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_436 IL_17136.1 | |
| IL_6XA1_223 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6XA1_224 | 1/S2/1098:1101, 1/S2/1131:1134 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.3 | |
| IL_6XA1_225 | 1/S2/1101:1103, 1/S2/1129:1131 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_6XA1_226 | 1/S2/1108:1110, 1/S2/1123:1124 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_6XA1_227 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_6XA1_228 | 1/S2/1176:1178, 1/S2/1183:1185 | Stack and bulge Not in a motif group | geometric IL_2O3X_001 IL_82842.2 | |
| IL_6XA1_229 | 1/S2/1203:1204, 1/S2/1694:1696 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.3 | |
| IL_6XA1_230 | 1/S2/1205:1208, 1/S2/1691:1693 | Intercalated cWW Not in a motif group | geometric IL_7A0S_044 IL_82842.2 | |
| IL_6XA1_231 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6XA1_232 | 1/S2/1222:1224, 1/S2/1642:1644 | No text annotation Not in a motif group | geometric IL_5UNE_004 IL_95997.1 | |
| IL_6XA1_233 | 1/S2/1230:1233, 1/S2/1525:1528 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.3 | |
| IL_6XA1_234 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6XA1_235 | 1/S2/1270:1272, 1/S2/1510:1512 | No text annotation Not in a motif group | homologous IL_4V88_446 IL_95997.1 | |
| IL_6XA1_236 | 1/S2/1280:1287, 1/S2/1314:1317 | No text annotation Not in a motif group | ||
| IL_6XA1_237 | 1/S2/1287:1290, 1/S2/1309:1314 | No text annotation Not in a motif group | ||
| IL_6XA1_238 | 1/S2/1291:1293, 1/S2/1306:1308 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_6XA1_239 | 1/S2/1327:1329, 1/S2/1500:1502 | No text annotation Not in a motif group | geometric IL_4V9F_105 IL_95997.1 | |
| IL_6XA1_240 | 1/S2/1329:1333, 1/S2/1498:1500 | Isolated cWS basepair Not in a motif group | geometric IL_4V88_450 IL_76319.2 | |
| IL_6XA1_241 | 1/S2/1333:1335, 1/S2/1492:1498 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_6XA1_242 | 1/S2/1336:1338, 1/S2/1488:1491 | No text annotation Not in a motif group | ||
| IL_6XA1_243 | 1/S2/1345:1349, 1/S2/1380:1384 | No text annotation Not in a motif group | ||
| IL_6XA1_244 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform Not in a motif group | homologous IL_4V88_454 IL_93353.1 | |
| IL_6XA1_245 | 1/S2/1395:1399, 1/S2/1447:1450 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.3 | |
| IL_6XA1_246 | 1/S2/1400:1402, 1/S2/1444:1446 | No text annotation Not in a motif group | ||
| IL_6XA1_247 | 1/S2/1402:1405, 1/S2/1441:1444 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_6XA1_248 | 1/S2/1412:1413, 1/S2/1427:1429 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.3 | |
| IL_6XA1_249 | 1/S2/1416:1417, 1/S2/1422:1424 | No text annotation Not in a motif group | ||
| IL_6XA1_250 | 1/S2/1537:1539, 1/S2/1594:1596 | CC cWW Not in a motif group | geometric IL_4J39_001 IL_95997.1 | |
| IL_6XA1_251 | 1/S2/1550:1558, 1/S2/1577:1582 | No text annotation Not in a motif group | ||
| IL_6XA1_252 | 1/S2/1560:1562, 1/S2/1573:1575 | No text annotation Not in a motif group | geometric IL_5AOX_001 IL_95997.1 | |
| IL_6XA1_253 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation Not in a motif group | homologous IL_8C3A_469 IL_10092.1 | |
| IL_6XA1_254 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_6XA1_255 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation Not in a motif group | ||
| IL_6XA1_256 | 1/S2/1706:1708, 1/S2/1826:1828 | No text annotation Not in a motif group | homologous IL_4V88_465 IL_95997.1 | |
| IL_6XA1_257 | 1/S2/1708:1711, 1/S2/1822:1826 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.3 | |
| IL_6XA1_258 | 1/S2/1714:1716, 1/S2/1817:1819 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6XA1_259 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared Not in a motif group | homologous IL_4V88_468 IL_09705.9 | |
| IL_6XA1_260 | 1/S2/1720:1722, 1/S2/1812:1813 | Single bulged U Not in a motif group | geometric IL_4V88_469 IL_83039.14 | |
| IL_6XA1_261 | 1/S2/1729:1731, 1/S2/1803:1805 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_6XA1_262 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_6XA1_263 | 1/S2/1739:1741, 1/S2/1793:1795 | No text annotation Not in a motif group | geometric IL_4E48_004 IL_95997.1 | |
| IL_6XA1_264 | 1/S2/1742:1746, 1/S2/1788:1792 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_6XA1_265 | 1/S2/1841:1843, 1/S2/1856:1858 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6XA1_001 | 1/L5/112:116, 1/L5/152:157, 1/L5/266:269 | No text annotation Not in a motif group | ||
| J3_6XA1_002 | 1/L5/371:378, 1/L5/405:406, 1/L8/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_6XA1_003 | 1/L5/703:704, 1/L5/942:963, 1/L5/1265:1271 | No text annotation Not in a motif group | ||
| J3_6XA1_004 | 1/L5/1518:1524, 1/L5/1609:1611, 1/L5/1627:1630 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_6XA1_005 | 1/L5/1533:1535, 1/L5/1567:1571, 1/L5/1596:1599 | No text annotation Not in a motif group | homologous J3_8C3A_004 NA | |
| J3_6XA1_006 | 1/L5/2380:2386, 1/L5/2792:2794, 1/L5/2806:2809 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_6XA1_007 | 1/L5/2389:2392, 1/L5/2772:2778, 1/L5/2787:2789 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_6XA1_008 | 1/L5/2427:2432, 1/L5/2502:2506, 1/L5/2523:2524 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_6XA1_009 | 1/L5/2538:2542, 1/L5/2559:2562, 1/L5/2744:2754 | No text annotation Not in a motif group | ||
| J3_6XA1_010 | 1/L5/2562:2563, 1/L5/2572:2576, 1/L5/2743:2744 | No text annotation Not in a motif group | ||
| J3_6XA1_011 | 1/L5/3916:3918, 1/L5/4052:4056, 1/L5/4138:4143 | No text annotation Not in a motif group | ||
| J3_6XA1_012 | 1/L5/4211:4213, 1/L5/4237:4239, 1/L5/4248:4253 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_6XA1_013 | 1/L5/4433:4436, 1/L5/4461:4463, 1/L5/4477:4483 | No text annotation Not in a motif group | homologous J3_5TBW_014 NA | |
| J3_6XA1_014 | 1/L5/4935:4940, 1/L5/4948:4956, 1/L5/5025:5028 | No text annotation Not in a motif group | ||
| J3_6XA1_015 | 1/L7/9:14, 1/L7/65:67, 1/L7/108:110 | No text annotation Not in a motif group | ||
| J3_6XA1_016 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation Not in a motif group | ||
| J3_6XA1_017 | 1/S2/40:41, 1/S2/481:489, 1/S2/511:514 | No text annotation Not in a motif group | ||
| J3_6XA1_018 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation Not in a motif group | ||
| J3_6XA1_019 | 1/S2/685:800, 1/S2/865:874, 1/S2/912:917 | No text annotation Not in a motif group | ||
| J3_6XA1_020 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation Not in a motif group | ||
| J3_6XA1_021 | 1/S2/937:941, 1/S2/985:993, 1/S2/1000:1005 | No text annotation Not in a motif group | ||
| J3_6XA1_022 | 1/S2/1094:1097, 1/S2/1135:1140, 1/S2/1147:1151 | No text annotation Not in a motif group | ||
| J3_6XA1_023 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_6XA1_024 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_6XA1_025 | 1/S2/1237:1245, 1/S2/1254:1266, 1/S2/1516:1520 | No text annotation Not in a motif group | ||
| J3_6XA1_026 | 1/S2/1272:1277, 1/S2/1320:1324, 1/S2/1504:1510 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_6XA1_027 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation Not in a motif group | ||
| J3_6XA1_028 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation Not in a motif group | ||
| J3_6XA1_029 | 1/S2/1390:1395, 1/S2/1450:1456, 1/S2/1470:1480 | No text annotation Not in a motif group | ||
| J3_6XA1_030 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: