6I7O Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6I7O_002 | 1/2/70:81 | No text annotation Not in a motif group | homologous HL_4V88_187 HL_59267.1 | |
| HL_6I7O_003 | 1/2/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.6 | |
| HL_6I7O_004 | 1/2/190:195 | No text annotation Not in a motif group | homologous HL_4V88_189 HL_77805.2 | |
| HL_6I7O_006 | 1/2/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_56241.2 | |
| HL_6I7O_007 | 1/2/276:279 | No text annotation Not in a motif group | homologous HL_4V88_192 HL_69858.1 | |
| HL_6I7O_008 | 1/2/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.3 | |
| HL_6I7O_009 | 1/2/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6I7O_010 | 1/2/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6I7O_011 | 1/2/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_29960.1 | |
| HL_6I7O_012 | 1/2/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_26380.1 | |
| HL_6I7O_014 | 1/2/520:532 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.3 | |
| HL_6I7O_021 | 1/2/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.3 | |
| HL_6I7O_023 | 1/2/1055:1064 | No text annotation Not in a motif group | ||
| HL_6I7O_024 | 1/2/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_85603.1 | |
| HL_6I7O_034 | 1/2/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_75828.1 | |
| HL_6I7O_037 | 1/2b/7:17 | No text annotation Not in a motif group | geometric HL_4V88_186 HL_89881.2 | |
| HL_6I7O_038 | 1/2b/70:81 | No text annotation Not in a motif group | geometric HL_7RQB_011 NA | |
| HL_6I7O_039 | 1/2b/154:160 | Other HL Not in a motif group | geometric HL_4V88_188 HL_76539.6 | |
| HL_6I7O_040 | 1/2b/190:195 | No text annotation Not in a motif group | geometric HL_4V88_189 HL_77805.2 | |
| HL_6I7O_041 | 1/2b/230:235 | UNCG Not in a motif group | geometric HL_5J7L_171 HL_29960.1 | |
| HL_6I7O_042 | 1/2b/243:250 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V88_191 HL_56241.2 | |
| HL_6I7O_043 | 1/2b/276:279 | No text annotation Not in a motif group | geometric HL_7A0S_039 HL_38927.6 | |
| HL_6I7O_044 | 1/2b/330:338 | No text annotation Not in a motif group | geometric HL_4V88_193 HL_69023.3 | |
| HL_6I7O_045 | 1/2b/368:373 | No text annotation Not in a motif group | geometric HL_4V88_194 HL_50142.2 | |
| HL_6I7O_046 | 1/2b/393:404 | No text annotation Not in a motif group | geometric HL_4V88_195 HL_84288.1 | |
| HL_6I7O_047 | 1/2b/414:419 | UNCG Not in a motif group | geometric HL_4V88_196 HL_29960.1 | |
| HL_6I7O_048 | 1/2b/450:456 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.5 | |
| HL_6I7O_049 | 1/2b/491:496 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_70546.2 | |
| HL_6I7O_050 | 1/2b/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.3 | |
| HL_6I7O_051 | 1/2b/569:574 | Other HL Not in a motif group | geometric HL_4V88_200 HL_53845.3 | |
| HL_6I7O_054 | 1/2b/764:772 | No text annotation Not in a motif group | geometric HL_4V88_203 HL_46766.2 | |
| HL_6I7O_055 | 1/2b/777:783 | No text annotation Not in a motif group | ||
| HL_6I7O_056 | 1/2b/828:844 | No text annotation Not in a motif group | homologous HL_8C3A_210 HL_07579.3 | |
| HL_6I7O_057 | 1/2b/900:909 | No text annotation Not in a motif group | geometric HL_4V88_206 HL_12326.2 | |
| HL_6I7O_058 | 1/2b/937:942 | Other HL Not in a motif group | geometric HL_4V88_207 HL_87030.3 | |
| HL_6I7O_059 | 1/2b/997:1007 | No text annotation Not in a motif group | geometric HL_5J7L_017 HL_12326.2 | |
| HL_6I7O_060 | 1/2b/1055:1064 | No text annotation Not in a motif group | ||
| HL_6I7O_061 | 1/2b/1084:1089 | Other HL Not in a motif group | geometric HL_4V88_210 HL_85603.1 | |
| HL_6I7O_062 | 1/2b/1121:1126 | GNRA Not in a motif group | geometric HL_5J7L_004 HL_85603.1 | |
| HL_6I7O_063 | 1/2b/1188:1197 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_70546.2 | |
| HL_6I7O_064 | 1/2b/1238:1247 | No text annotation Not in a motif group | geometric HL_4V88_213 HL_53597.4 | |
| HL_6I7O_065 | 1/2b/1296:1301 | GNRA Not in a motif group | geometric HL_5J7L_023 HL_85603.1 | |
| HL_6I7O_066 | 1/2b/1309:1316 | No text annotation Not in a motif group | geometric HL_4V88_215 HL_71554.2 | |
| HL_6I7O_067 | 1/2b/1359:1364 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_70546.2 | |
| HL_6I7O_068 | 1/2b/1396:1402 | No text annotation Not in a motif group | geometric HL_5J7L_026 HL_90617.4 | |
| HL_6I7O_069 | 1/2b/1501:1506 | GNRA Not in a motif group | geometric HL_4Y1M_002 HL_85603.1 | |
| HL_6I7O_070 | 1/2b/1550:1561 | No text annotation Not in a motif group | geometric HL_4V88_219 HL_75768.1 | |
| HL_6I7O_071 | 1/2b/1594:1602 | No text annotation Not in a motif group | geometric HL_4V88_220 HL_75828.1 | |
| HL_6I7O_073 | 1/2b/1778:1783 | Other HL Not in a motif group | geometric HL_4V88_222 HL_16173.1 | |
| HL_6I7O_074 | 1/BQ/38:45 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.3 | |
| HL_6I7O_075 | 1/BQ/69:74 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.3 | |
| HL_6I7O_076 | 1/BQ/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.8 | |
| HL_6I7O_077 | 1/BQ/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_75930.1 | |
| HL_6I7O_078 | 1/BQ/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_41998.2 | |
| HL_6I7O_079 | 1/BQ/208:212 | No text annotation Not in a motif group | homologous HL_8C3A_006 HL_98984.5 | |
| HL_6I7O_080 | 1/BQ/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.10 | |
| HL_6I7O_081 | 1/BQ/278:287 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_6I7O_082 | 1/BQ/303:312 | No text annotation Not in a motif group | geometric HL_4QLM_002 HL_12078.5 | |
| HL_6I7O_083 | 1/BQ/357:362 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_85603.1 | |
| HL_6I7O_084 | 1/BQ/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_85603.1 | |
| HL_6I7O_085 | 1/BQ/542:549 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
| HL_6I7O_086 | 1/BQ/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_85603.1 | |
| HL_6I7O_087 | 1/BQ/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_41998.2 | |
| HL_6I7O_088 | 1/BQ/686:694 | No text annotation Not in a motif group | homologous HL_5TBW_015 HL_03345.1 | |
| HL_6I7O_089 | 1/BQ/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_85603.1 | |
| HL_6I7O_090 | 1/BQ/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_85603.1 | |
| HL_6I7O_091 | 1/BQ/763:768 | No text annotation Not in a motif group | homologous HL_5TBW_018 HL_34168.3 | |
| HL_6I7O_092 | 1/BQ/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_85603.1 | |
| HL_6I7O_093 | 1/BQ/876:885 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.7 | |
| HL_6I7O_094 | 1/BQ/910:918 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_6I7O_095 | 1/BQ/958:963 | No text annotation Not in a motif group | ||
| HL_6I7O_096 | 1/BQ/1022:1030 | No text annotation Not in a motif group | ||
| HL_6I7O_097 | 1/BQ/1076:1083 | No text annotation Not in a motif group | geometric HL_5TBW_024 HL_71554.2 | |
| HL_6I7O_098 | 1/BQ/1126:1132 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_85603.1 | |
| HL_6I7O_099 | 1/BQ/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.3 | |
| HL_6I7O_100 | 1/BQ/1239:1249 | No text annotation Not in a motif group | homologous HL_8C3A_027 HL_07145.2 | |
| HL_6I7O_101 | 1/BQ/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.3 | |
| HL_6I7O_103 | 1/BQ/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_85603.1 | |
| HL_6I7O_104 | 1/BQ/1462:1470 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_41998.2 | |
| HL_6I7O_105 | 1/BQ/1506:1512 | No text annotation Not in a motif group | homologous HL_8C3A_032 HL_46680.2 | |
| HL_6I7O_106 | 1/BQ/1544:1549 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_85603.1 | |
| HL_6I7O_108 | 1/BQ/1599:1608 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.3 | |
| HL_6I7O_109 | 1/BQ/1634:1639 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_85603.1 | |
| HL_6I7O_110 | 1/BQ/1680:1688 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_84085.3 | |
| HL_6I7O_111 | 1/BQ/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.3 | |
| HL_6I7O_112 | 1/BQ/1759:1766 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_70546.2 | |
| HL_6I7O_113 | 1/BQ/1792:1796 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.3 | |
| HL_6I7O_114 | 1/BQ/1844:1851 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.3 | |
| HL_6I7O_115 | 1/BQ/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_85603.1 | |
| HL_6I7O_116 | 1/BQ/1923:1928 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_29960.1 | |
| HL_6I7O_118 | 1/BQ/2110:2114 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_86735.2 | |
| HL_6I7O_119 | 1/BQ/2135:2145 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.6 | |
| HL_6I7O_120 | 1/BQ/2164:2170 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_85603.1 | |
| HL_6I7O_121 | 1/BQ/2220:2225 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_85603.1 | |
| HL_6I7O_122 | 1/BQ/2253:2263 | No text annotation Not in a motif group | homologous HL_8C3A_049 HL_71924.2 | |
| HL_6I7O_123 | 1/BQ/2292:2300 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_51824.2 | |
| HL_6I7O_124 | 1/BQ/2369:2378 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.7 | |
| HL_6I7O_126 | 1/BQ/2536:2543 | No text annotation Not in a motif group | ||
| HL_6I7O_127 | 1/BQ/2568:2573 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_40039.1 | |
| HL_6I7O_128 | 1/BQ/2616:2624 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.3 | |
| HL_6I7O_129 | 1/BQ/2633:2645 | No text annotation Not in a motif group | homologous HL_8C3A_056 HL_19870.7 | |
| HL_6I7O_130 | 1/BQ/2673:2681 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_6I7O_131 | 1/BQ/2693:2700 | No text annotation Not in a motif group | homologous HL_8C3A_058 HL_12078.5 | |
| HL_6I7O_132 | 1/BQ/2724:2732 | No text annotation Not in a motif group | homologous HL_5TBW_058 HL_92229.2 | |
| HL_6I7O_133 | 1/BQ/2744:2749 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_85603.1 | |
| HL_6I7O_134 | 1/BQ/2776:2784 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.2 | |
| HL_6I7O_135 | 1/BQ/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.3 | |
| HL_6I7O_136 | 1/BQ/2897:2904 | No text annotation Not in a motif group | homologous HL_8C3A_063 HL_91104.2 | |
| HL_6I7O_137 | 1/BQ/2920:2926 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_22584.1 | |
| HL_6I7O_138 | 1/BQ/2963:2968 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_85603.1 | |
| HL_6I7O_139 | 1/BQ/3025:3030 | No text annotation Not in a motif group | homologous HL_8C3A_066 HL_85603.1 | |
| HL_6I7O_140 | 1/BQ/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.2 | |
| HL_6I7O_141 | 1/BQ/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.8 | |
| HL_6I7O_142 | 1/BQ/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_75930.1 | |
| HL_6I7O_143 | 1/BQ/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_26380.1 | |
| HL_6I7O_144 | 1/BQ/3303:3311 | No text annotation Not in a motif group | homologous HL_8C3A_071 HL_64690.2 | |
| HL_6I7O_145 | 1/BQ/3350:3353 | No text annotation Not in a motif group | geometric HL_7A0S_039 HL_38927.6 | |
| HL_6I7O_146 | 1/BR/36:41 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.6 | |
| HL_6I7O_147 | 1/BR/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_85603.1 | |
| HL_6I7O_148 | 1/BS/47:56 | No text annotation Not in a motif group | geometric HL_7A0S_001 HL_99167.3 | |
| HL_6I7O_149 | 1/BS/69:89 | No text annotation Not in a motif group | ||
| HL_6I7O_150 | 1/BS/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_83767.1 | |
| HL_6I7O_151 | 1/BS/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_02129.1 | |
| HL_6I7O_152 | 1/YQ/38:45 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.3 | |
| HL_6I7O_153 | 1/YQ/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.3 | |
| HL_6I7O_154 | 1/YQ/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.8 | |
| HL_6I7O_155 | 1/YQ/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_75930.1 | |
| HL_6I7O_156 | 1/YQ/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_41998.2 | |
| HL_6I7O_157 | 1/YQ/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.5 | |
| HL_6I7O_158 | 1/YQ/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.10 | |
| HL_6I7O_159 | 1/YQ/278:287 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_6I7O_160 | 1/YQ/303:312 | No text annotation Not in a motif group | homologous HL_8C3A_009 HL_12078.5 | |
| HL_6I7O_161 | 1/YQ/357:362 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_85603.1 | |
| HL_6I7O_162 | 1/YQ/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_85603.1 | |
| HL_6I7O_163 | 1/YQ/543:548 | No text annotation Not in a motif group | ||
| HL_6I7O_164 | 1/YQ/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_85603.1 | |
| HL_6I7O_165 | 1/YQ/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_41998.2 | |
| HL_6I7O_166 | 1/YQ/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_6I7O_167 | 1/YQ/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_85603.1 | |
| HL_6I7O_168 | 1/YQ/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_85603.1 | |
| HL_6I7O_169 | 1/YQ/763:768 | No text annotation Not in a motif group | geometric HL_5TBW_018 HL_34168.3 | |
| HL_6I7O_170 | 1/YQ/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_85603.1 | |
| HL_6I7O_171 | 1/YQ/876:885 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.7 | |
| HL_6I7O_172 | 1/YQ/910:918 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_6I7O_173 | 1/YQ/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.2 | |
| HL_6I7O_174 | 1/YQ/1023:1029 | No text annotation Not in a motif group | ||
| HL_6I7O_175 | 1/YQ/1076:1083 | No text annotation Not in a motif group | homologous HL_8C3A_024 HL_71554.2 | |
| HL_6I7O_176 | 1/YQ/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_85603.1 | |
| HL_6I7O_177 | 1/YQ/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.3 | |
| HL_6I7O_178 | 1/YQ/1239:1249 | No text annotation Not in a motif group | homologous HL_8C3A_027 HL_07145.2 | |
| HL_6I7O_179 | 1/YQ/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.3 | |
| HL_6I7O_181 | 1/YQ/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_85603.1 | |
| HL_6I7O_182 | 1/YQ/1462:1470 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_41998.2 | |
| HL_6I7O_183 | 1/YQ/1506:1512 | No text annotation Not in a motif group | homologous HL_8C3A_032 HL_46680.2 | |
| HL_6I7O_184 | 1/YQ/1544:1549 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_85603.1 | |
| HL_6I7O_186 | 1/YQ/1599:1608 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.3 | |
| HL_6I7O_187 | 1/YQ/1634:1639 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_85603.1 | |
| HL_6I7O_188 | 1/YQ/1680:1688 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_84085.3 | |
| HL_6I7O_189 | 1/YQ/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.3 | |
| HL_6I7O_190 | 1/YQ/1759:1766 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_70546.2 | |
| HL_6I7O_191 | 1/YQ/1792:1796 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.3 | |
| HL_6I7O_192 | 1/YQ/1844:1851 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.3 | |
| HL_6I7O_193 | 1/YQ/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_85603.1 | |
| HL_6I7O_194 | 1/YQ/1923:1928 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_29960.1 | |
| HL_6I7O_196 | 1/YQ/2110:2114 | No text annotation Not in a motif group | homologous HL_5TBW_045 HL_86735.2 | |
| HL_6I7O_197 | 1/YQ/2135:2145 | No text annotation Not in a motif group | homologous HL_8C3A_046 HL_43613.6 | |
| HL_6I7O_198 | 1/YQ/2164:2170 | GNRA Not in a motif group | homologous HL_5TBW_047 HL_85603.1 | |
| HL_6I7O_199 | 1/YQ/2220:2225 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_85603.1 | |
| HL_6I7O_200 | 1/YQ/2253:2263 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_6I7O_201 | 1/YQ/2292:2300 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.2 | |
| HL_6I7O_202 | 1/YQ/2369:2378 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.7 | |
| HL_6I7O_204 | 1/YQ/2536:2543 | No text annotation Not in a motif group | ||
| HL_6I7O_205 | 1/YQ/2568:2573 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_40039.1 | |
| HL_6I7O_206 | 1/YQ/2616:2624 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_53171.3 | |
| HL_6I7O_207 | 1/YQ/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.7 | |
| HL_6I7O_208 | 1/YQ/2673:2681 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_6I7O_209 | 1/YQ/2693:2700 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.5 | |
| HL_6I7O_210 | 1/YQ/2724:2732 | No text annotation Not in a motif group | homologous HL_5TBW_058 HL_92229.2 | |
| HL_6I7O_211 | 1/YQ/2744:2749 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_85603.1 | |
| HL_6I7O_212 | 1/YQ/2776:2784 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.2 | |
| HL_6I7O_213 | 1/YQ/2840:2848 | No text annotation Not in a motif group | homologous HL_8C3A_062 HL_06192.3 | |
| HL_6I7O_214 | 1/YQ/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_91104.2 | |
| HL_6I7O_215 | 1/YQ/2920:2926 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_22584.1 | |
| HL_6I7O_216 | 1/YQ/2963:2968 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_85603.1 | |
| HL_6I7O_217 | 1/YQ/3025:3030 | GNRA Not in a motif group | geometric HL_1L9A_002 HL_85603.1 | |
| HL_6I7O_218 | 1/YQ/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.2 | |
| HL_6I7O_219 | 1/YQ/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.8 | |
| HL_6I7O_220 | 1/YQ/3193:3199 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.3 | |
| HL_6I7O_221 | 1/YQ/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_26380.1 | |
| HL_6I7O_222 | 1/YQ/3303:3311 | No text annotation Not in a motif group | geometric HL_5J7L_201 HL_64690.2 | |
| HL_6I7O_223 | 1/YQ/3350:3353 | No text annotation Not in a motif group | geometric HL_7A0S_039 HL_38927.6 | |
| HL_6I7O_224 | 1/YR/36:41 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.6 | |
| HL_6I7O_225 | 1/YR/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_85603.1 | |
| HL_6I7O_226 | 1/YS/69:89 | No text annotation Not in a motif group | ||
| HL_6I7O_227 | 1/YS/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_83767.1 | |
| HL_6I7O_228 | 1/YS/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_02129.1 | |
| HL_6I7O_229 | 1/m/12:23 | No text annotation Not in a motif group | homologous HL_4V7M_038 HL_86332.1 | |
| HL_6I7O_230 | 1/m/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4V9Q_214 HL_53597.4 | |
| HL_6I7O_231 | 1/m/52:60 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_2BTE_004 HL_22280.5 | |
| HL_6I7O_232 | 1/mb/13:23 | No text annotation Not in a motif group | geometric HL_5B63_003 HL_25462.3 | |
| HL_6I7O_233 | 1/mb/32:40 | tRNA anticodon loop Not in a motif group | geometric HL_4TUE_034 HL_53597.4 | |
| HL_6I7O_234 | 1/mb/54:62 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_2ZUE_003 HL_22280.5 | |
| HL_6I7O_235 | 1/n/12:23 | No text annotation Not in a motif group | geometric HL_4JXZ_001 HL_86332.1 | |
| HL_6I7O_236 | 1/n/31:39 | No text annotation Not in a motif group | homologous HL_7U2I_104 HL_53597.4 | |
| HL_6I7O_237 | 1/n/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_3W3S_004 HL_41998.2 | |
| HL_6I7O_238 | 1/nb/13:22 | No text annotation Not in a motif group | homologous HL_6GSK_217 NA | |
| HL_6I7O_239 | 1/nb/29:41 | No text annotation Not in a motif group | homologous HL_6GSL_221 HL_06285.3 | |
| HL_6I7O_240 | 1/nb/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V90_034 HL_22280.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6I7O_001 | No text annotation | ||
| HL_6I7O_005 | UNCG | ||
| HL_6I7O_013 | No text annotation | ||
| HL_6I7O_015 | Other HL | ||
| HL_6I7O_016 | No text annotation | ||
| HL_6I7O_017 | No text annotation | ||
| HL_6I7O_018 | No text annotation | ||
| HL_6I7O_019 | No text annotation | ||
| HL_6I7O_020 | No text annotation | ||
| HL_6I7O_022 | No text annotation | ||
| HL_6I7O_025 | GNRA | ||
| HL_6I7O_026 | No text annotation | ||
| HL_6I7O_027 | No text annotation | ||
| HL_6I7O_028 | GNRA | ||
| HL_6I7O_029 | No text annotation | ||
| HL_6I7O_030 | No text annotation | ||
| HL_6I7O_031 | No text annotation | ||
| HL_6I7O_032 | GNRA | ||
| HL_6I7O_033 | No text annotation | ||
| HL_6I7O_035 | No text annotation | ||
| HL_6I7O_036 | Other HL | ||
| HL_6I7O_052 | No text annotation | ||
| HL_6I7O_053 | No text annotation | ||
| HL_6I7O_072 | No text annotation | ||
| HL_6I7O_102 | No text annotation | ||
| HL_6I7O_107 | No text annotation | ||
| HL_6I7O_117 | No text annotation | ||
| HL_6I7O_125 | No text annotation | ||
| HL_6I7O_180 | No text annotation | ||
| HL_6I7O_185 | No text annotation | ||
| HL_6I7O_195 | No text annotation | ||
| HL_6I7O_203 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6I7O_001 | 1/2/24:26, 1/2/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.13 | |
| IL_6I7O_002 | 1/2/35:37, 1/2/471:473 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_70707.3 | |
| IL_6I7O_003 | 1/2/37:41, 1/2/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_6I7O_004 | 1/2/42:48, 1/2/431:433 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_6I7O_005 | 1/2/50:52, 1/2/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_80097.2 | |
| IL_6I7O_006 | 1/2/58:63, 1/2/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6I7O_007 | 1/2/64:69, 1/2/82:86 | No text annotation Not in a motif group | homologous IL_8C3A_398 IL_77691.2 | |
| IL_6I7O_008 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.4 | |
| IL_6I7O_009 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.2 | |
| IL_6I7O_010 | 1/2/117:122, 1/2/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6I7O_011 | 1/2/143:149, 1/2/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_6I7O_012 | 1/2/150:152, 1/2/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_3W3S_003 IL_70707.3 | |
| IL_6I7O_013 | 1/2/186:189, 1/2/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.11 | |
| IL_6I7O_014 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.3 | |
| IL_6I7O_015 | 1/2/206:208, 1/2/257:259 | No text annotation Not in a motif group | homologous IL_4V88_398 IL_86319.3 | |
| IL_6I7O_016 | 1/2/265:267, 1/2/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.7 | |
| IL_6I7O_017 | 1/2/270:273, 1/2/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_6I7O_018 | 1/2/275:276, 1/2/279:281 | Single bulged U Not in a motif group | geometric IL_4V88_401 IL_83039.17 | |
| IL_6I7O_019 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.3 | |
| IL_6I7O_020 | 1/2/318:323, 1/2/345:346 | No text annotation Not in a motif group | homologous IL_4V88_403 IL_48100.2 | |
| IL_6I7O_022 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_70707.3 | |
| IL_6I7O_023 | 1/2/411:413, 1/2/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.5 | |
| IL_6I7O_024 | 1/2/439:441, 1/2/463:464 | Single bulged U Not in a motif group | geometric IL_4V88_407 IL_83039.17 | |
| IL_6I7O_025 | 1/2/443:447, 1/2/460:461 | C-loop Not in a motif group | geometric IL_4LFB_015 IL_75255.1 | |
| IL_6I7O_026 | 1/2/447:448, 1/2/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.4 | |
| IL_6I7O_027 | 1/2/480:483, 1/2/504:508 | No text annotation Not in a motif group | ||
| IL_6I7O_028 | 1/2/517:518, 1/2/533:535 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_80097.2 | |
| IL_6I7O_029 | 1/2/518:520, 1/2/532:533 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_80097.2 | |
| IL_6I7O_033 | 1/2/616:622, 1/2/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_38186.1 | |
| IL_6I7O_034 | 1/2/624:626, 1/2/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_86319.3 | |
| IL_6I7O_035 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.2 | |
| IL_6I7O_042 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.3 | |
| IL_6I7O_043 | 1/2/867:870, 1/2/957:961 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.4 | |
| IL_6I7O_044 | 1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_430 IL_30621.4 | |
| IL_6I7O_045 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.4 | |
| IL_6I7O_046 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.4 | |
| IL_6I7O_050 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6I7O_051 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.4 | |
| IL_6I7O_052 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.17 | |
| IL_6I7O_056 | 1/2/1157:1160, 1/2/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.7 | |
| IL_6I7O_057 | 1/2/1173:1175, 1/2/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_86319.3 | |
| IL_6I7O_058 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.5 | |
| IL_6I7O_088 | 1/2b/24:26, 1/2b/600:601 | Single bulged C Not in a motif group | geometric IL_4V88_384 IL_61258.13 | |
| IL_6I7O_089 | 1/2b/35:37, 1/2b/471:473 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_70707.3 | |
| IL_6I7O_090 | 1/2b/37:41, 1/2b/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_6I7O_091 | 1/2b/42:48, 1/2b/431:433 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_6I7O_092 | 1/2b/50:52, 1/2b/428:429 | Minor groove platform Not in a motif group | geometric IL_4LFB_004 IL_80097.2 | |
| IL_6I7O_093 | 1/2b/58:63, 1/2b/87:89 | No text annotation Not in a motif group | geometric IL_4V88_389 IL_95004.1 | |
| IL_6I7O_094 | 1/2b/64:69, 1/2b/82:86 | No text annotation Not in a motif group | homologous IL_8C3A_398 IL_77691.2 | |
| IL_6I7O_095 | 1/2b/109:112, 1/2b/302:305 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_391 IL_30621.4 | |
| IL_6I7O_096 | 1/2b/113:116, 1/2b/300:301 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.2 | |
| IL_6I7O_097 | 1/2b/117:122, 1/2b/295:299 | No text annotation Not in a motif group | geometric IL_4V88_393 IL_64181.2 | |
| IL_6I7O_098 | 1/2b/143:149, 1/2b/165:172 | tWH-tWH-tHW-tHW Not in a motif group | geometric IL_4V88_394 IL_80604.2 | |
| IL_6I7O_099 | 1/2b/150:152, 1/2b/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_5F5F_003 IL_70707.3 | |
| IL_6I7O_100 | 1/2b/186:189, 1/2b/196:199 | Double sheared Not in a motif group | geometric IL_1SAQ_002 IL_09705.11 | |
| IL_6I7O_101 | 1/2b/204:206, 1/2b/259:263 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.3 | |
| IL_6I7O_102 | 1/2b/206:208, 1/2b/257:259 | No text annotation Not in a motif group | geometric IL_5TBW_115 IL_86319.3 | |
| IL_6I7O_103 | 1/2b/265:267, 1/2b/288:289 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_37497.7 | |
| IL_6I7O_104 | 1/2b/270:273, 1/2b/283:285 | No text annotation Not in a motif group | geometric IL_4V88_400 IL_47298.1 | |
| IL_6I7O_105 | 1/2b/275:276, 1/2b/279:281 | Single bulged U Not in a motif group | geometric IL_4V88_401 IL_83039.17 | |
| IL_6I7O_106 | 1/2b/311:316, 1/2b/348:355 | Kink-turn with non-sequential stacking Not in a motif group | geometric IL_4V88_402 IL_45067.3 | |
| IL_6I7O_107 | 1/2b/318:323, 1/2b/345:346 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6I7O_108 | 1/2b/363:365, 1/2b/376:381 | No text annotation Not in a motif group | geometric IL_4V88_404 IL_11347.1 | |
| IL_6I7O_109 | 1/2b/389:391, 1/2b/406:408 | No text annotation Not in a motif group | geometric IL_4YHW_001 IL_70707.3 | |
| IL_6I7O_110 | 1/2b/411:413, 1/2b/420:422 | Isolated near basepair Not in a motif group | geometric IL_4V88_406 IL_52767.5 | |
| IL_6I7O_111 | 1/2b/439:441, 1/2b/463:464 | Single bulged U Not in a motif group | geometric IL_4V88_407 IL_83039.17 | |
| IL_6I7O_112 | 1/2b/443:447, 1/2b/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6I7O_113 | 1/2b/447:448, 1/2b/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.4 | |
| IL_6I7O_114 | 1/2b/480:483, 1/2b/504:508 | No text annotation Not in a motif group | ||
| IL_6I7O_115 | 1/2b/487:491, 1/2b/496:500 | No text annotation Not in a motif group | ||
| IL_6I7O_116 | 1/2b/517:518, 1/2b/533:535 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_80097.2 | |
| IL_6I7O_117 | 1/2b/518:520, 1/2b/532:533 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_80097.2 | |
| IL_6I7O_118 | 1/2b/550:557, 1/2b/587:588 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.8 | |
| IL_6I7O_119 | 1/2b/557:559, 1/2b/586:587 | Single bulged U Not in a motif group | geometric IL_4V88_414 IL_83039.17 | |
| IL_6I7O_120 | 1/2b/562:568, 1/2b/575:583 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_6I7O_121 | 1/2b/616:622, 1/2b/1104:1105 | No text annotation Not in a motif group | geometric IL_4V88_416 IL_38186.1 | |
| IL_6I7O_122 | 1/2b/624:626, 1/2b/973:975 | CC cWW Not in a motif group | geometric IL_4E59_001 IL_86319.3 | |
| IL_6I7O_123 | 1/2b/627:631, 1/2b/968:972 | tSH-tHW-tHS Not in a motif group | geometric IL_4LFB_033 IL_17136.2 | |
| IL_6I7O_124 | 1/2b/646:648, 1/2b/686:688 | No text annotation Not in a motif group | geometric IL_5UNE_007 IL_86319.3 | |
| IL_6I7O_125 | 1/2b/651:657, 1/2b/676:683 | No text annotation Not in a motif group | ||
| IL_6I7O_126 | 1/2b/746:747, 1/2b/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_4V88_423 IL_09061.9 | |
| IL_6I7O_127 | 1/2b/748:750, 1/2b/799:801 | No text annotation Not in a motif group | geometric IL_2O3Y_004 IL_86319.3 | |
| IL_6I7O_128 | 1/2b/751:760, 1/2b/790:798 | No text annotation Not in a motif group | ||
| IL_6I7O_129 | 1/2b/822:824, 1/2b/848:850 | No text annotation Not in a motif group | geometric IL_3GM7_005 IL_86319.3 | |
| IL_6I7O_130 | 1/2b/865:866, 1/2b/962:965 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_050 NA | |
| IL_6I7O_131 | 1/2b/867:870, 1/2b/957:961 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.4 | |
| IL_6I7O_132 | 1/2b/871:874, 1/2b/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.4 | |
| IL_6I7O_133 | 1/2b/874:878, 1/2b/950:953 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.4 | |
| IL_6I7O_134 | 1/2b/885:888, 1/2b/924:927 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_432 IL_30621.4 | |
| IL_6I7O_135 | 1/2b/893:899, 1/2b/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_6I7O_136 | 1/2b/985:990, 1/2b/1014:1016 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_6I7O_137 | 1/2b/990:994, 1/2b/1010:1014 | tSH-tHW-tHS Not in a motif group | geometric IL_4LFB_033 IL_17136.2 | |
| IL_6I7O_138 | 1/2b/1034:1036, 1/2b/1095:1101 | No text annotation Not in a motif group | geometric IL_4V88_437 IL_19557.3 | |
| IL_6I7O_139 | 1/2b/1041:1044, 1/2b/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.4 | |
| IL_6I7O_140 | 1/2b/1051:1053, 1/2b/1066:1067 | Single bulged U Not in a motif group | geometric IL_2PJP_001 IL_83039.17 | |
| IL_6I7O_141 | 1/2b/1111:1118, 1/2b/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | geometric IL_5J7L_038 IL_24606.2 | |
| IL_6I7O_142 | 1/2b/1146:1147, 1/2b/1630:1632 | Single bulged A Not in a motif group | geometric IL_5J7L_039 IL_37497.7 | |
| IL_6I7O_143 | 1/2b/1149:1151, 1/2b/1627:1628 | Single bulged G Not in a motif group | geometric IL_4V88_442 IL_00225.4 | |
| IL_6I7O_144 | 1/2b/1157:1160, 1/2b/1617:1621 | C-loop Not in a motif group | geometric IL_1KOG_007 IL_75255.1 | |
| IL_6I7O_145 | 1/2b/1173:1175, 1/2b/1464:1466 | No text annotation Not in a motif group | geometric IL_4V88_444 IL_86319.3 | |
| IL_6I7O_146 | 1/2b/1178:1179, 1/2b/1459:1461 | Minor groove platform Not in a motif group | geometric IL_4V88_445 IL_42622.5 | |
| IL_6I7O_147 | 1/2b/1213:1215, 1/2b/1448:1450 | No text annotation Not in a motif group | geometric IL_4E48_005 IL_86319.3 | |
| IL_6I7O_148 | 1/2b/1224:1233, 1/2b/1252:1259 | No text annotation Not in a motif group | ||
| IL_6I7O_149 | 1/2b/1234:1236, 1/2b/1249:1251 | No text annotation Not in a motif group | geometric IL_4V88_448 IL_27844.2 | |
| IL_6I7O_150 | 1/2b/1268:1270, 1/2b/1440:1441 | Single bulged U Not in a motif group | geometric IL_4V88_449 IL_83039.17 | |
| IL_6I7O_151 | 1/2b/1272:1276, 1/2b/1436:1438 | Isolated cWS basepair Not in a motif group | geometric IL_4V88_450 IL_76319.2 | |
| IL_6I7O_152 | 1/2b/1276:1278, 1/2b/1430:1436 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_451 IL_92788.3 | |
| IL_6I7O_153 | 1/2b/1280:1281, 1/2b/1426:1428 | Single bulged A Not in a motif group | geometric IL_4V88_452 IL_37497.7 | |
| IL_6I7O_154 | 1/2b/1290:1292, 1/2b/1323:1325 | Isolated cWH basepair Not in a motif group | geometric IL_5J7L_011 IL_70707.3 | |
| IL_6I7O_155 | 1/2b/1306:1308, 1/2b/1317:1318 | Minor groove platform Not in a motif group | geometric IL_4V88_454 IL_80097.2 | |
| IL_6I7O_156 | 1/2b/1339:1342, 1/2b/1383:1385 | No text annotation Not in a motif group | geometric IL_4V88_455 IL_27844.2 | |
| IL_6I7O_157 | 1/2b/1345:1348, 1/2b/1377:1380 | Minor groove platform Not in a motif group | geometric IL_4V88_456 IL_76458.1 | |
| IL_6I7O_158 | 1/2b/1352:1355, 1/2b/1368:1373 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_205D_001 IL_30621.4 | |
| IL_6I7O_159 | 1/2b/1389:1391, 1/2b/1407:1412 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_458 IL_58032.1 | |
| IL_6I7O_160 | 1/2b/1480:1487, 1/2b/1519:1527 | No text annotation Not in a motif group | geometric IL_4V88_459 IL_10447.1 | |
| IL_6I7O_161 | 1/2b/1488:1494, 1/2b/1513:1518 | No text annotation Not in a motif group | geometric IL_4V88_460 IL_75461.4 | |
| IL_6I7O_162 | 1/2b/1495:1498, 1/2b/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_461 IL_30621.4 | |
| IL_6I7O_163 | 1/2b/1540:1545, 1/2b/1566:1571 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_6I7O_164 | 1/2b/1636:1638, 1/2b/1764:1767 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_6I7O_165 | 1/2b/1638:1641, 1/2b/1760:1764 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6I7O_166 | 1/2b/1642:1644, 1/2b/1757:1759 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_86319.3 | |
| IL_6I7O_167 | 1/2b/1644:1647, 1/2b/1753:1757 | No text annotation Not in a motif group | ||
| IL_6I7O_168 | 1/2b/1650:1652, 1/2b/1748:1750 | AA cWW Not in a motif group | geometric IL_4V88_467 IL_86319.3 | |
| IL_6I7O_169 | 1/2b/1653:1656, 1/2b/1744:1747 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.11 | |
| IL_6I7O_170 | 1/2b/1656:1658, 1/2b/1743:1744 | Single bulged U Not in a motif group | geometric IL_4V88_469 IL_83039.17 | |
| IL_6I7O_171 | 1/2b/1665:1667, 1/2b/1734:1736 | No text annotation Not in a motif group | geometric IL_4Y1M_005 IL_70707.3 | |
| IL_6I7O_172 | 1/2b/1669:1672, 1/2b/1729:1732 | Double sheared Not in a motif group | geometric IL_4V88_471 IL_09705.11 | |
| IL_6I7O_173 | 1/2b/1672:1674, 1/2b/1727:1729 | No text annotation Not in a motif group | geometric IL_3HHN_004 IL_86319.3 | |
| IL_6I7O_174 | 1/2b/1675:1678, 1/2b/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.4 | |
| IL_6I7O_175 | 1/2b/1678:1682, 1/2b/1719:1723 | Triple sheared Not in a motif group | geometric IL_4V88_474 IL_56467.9 | |
| IL_6I7O_176 | 1/BQ/3:4, 1/BS/155:156 | No text annotation Not in a motif group | ||
| IL_6I7O_177 | 1/BQ/7:8, 1/BS/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.13 | |
| IL_6I7O_178 | 1/BQ/13:15, 1/BS/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.17 | |
| IL_6I7O_179 | 1/BQ/27:28, 1/BQ/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.5 | |
| IL_6I7O_180 | 1/BQ/31:38, 1/BQ/45:53 | No text annotation Not in a motif group | homologous IL_8C3A_005 IL_35728.2 | |
| IL_6I7O_181 | 1/BQ/82:89, 1/BQ/97:103 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_6I7O_182 | 1/BQ/123:124, 1/BQ/144:149 | No text annotation Not in a motif group | homologous IL_5TBW_007 IL_19724.2 | |
| IL_6I7O_183 | 1/BQ/125:127, 1/BQ/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_86319.3 | |
| IL_6I7O_184 | 1/BQ/163:165, 1/BQ/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.5 | |
| IL_6I7O_185 | 1/BQ/169:171, 1/BQ/247:253 | No text annotation Not in a motif group | ||
| IL_6I7O_186 | 1/BQ/177:179, 1/BQ/237:241 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_011 IL_63450.3 | |
| IL_6I7O_187 | 1/BQ/189:191, 1/BQ/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.17 | |
| IL_6I7O_188 | 1/BQ/337:339, 1/BS/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.7 | |
| IL_6I7O_189 | 1/BQ/376:379, 1/BQ/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.7 | |
| IL_6I7O_190 | 1/BQ/404:410, 1/BS/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.7 | |
| IL_6I7O_191 | 1/BQ/429:431, 1/BQ/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_70707.3 | |
| IL_6I7O_193 | 1/BQ/512:513, 1/BQ/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.7 | |
| IL_6I7O_194 | 1/BQ/517:525, 1/BQ/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_6I7O_195 | 1/BQ/531:538, 1/BQ/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_6I7O_196 | 1/BQ/668:670, 1/BQ/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_86319.3 | |
| IL_6I7O_197 | 1/BQ/680:684, 1/BQ/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_6I7O_198 | 1/BQ/725:728, 1/BQ/741:745 | No text annotation Not in a motif group | homologous IL_8C3A_025 IL_07235.2 | |
| IL_6I7O_199 | 1/BQ/752:753, 1/BQ/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.7 | |
| IL_6I7O_200 | 1/BQ/755:756, 1/BQ/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.17 | |
| IL_6I7O_201 | 1/BQ/758:763, 1/BQ/768:773 | No text annotation Not in a motif group | geometric IL_5TBW_026 IL_19954.2 | |
| IL_6I7O_202 | 1/BQ/803:805, 1/BQ/938:940 | No text annotation Not in a motif group | homologous IL_8C3A_029 IL_86319.3 | |
| IL_6I7O_203 | 1/BQ/805:809, 1/BQ/931:938 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.7 | |
| IL_6I7O_204 | 1/BQ/828:829, 1/BQ/895:897 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_37497.7 | |
| IL_6I7O_205 | 1/BQ/833:834, 1/BQ/859:861 | No text annotation Not in a motif group | homologous IL_8C3A_032 IL_00225.4 | |
| IL_6I7O_206 | 1/BQ/834:838, 1/BQ/855:859 | Triple sheared Not in a motif group | geometric IL_7RQB_021 NA | |
| IL_6I7O_207 | 1/BQ/869:872, 1/BQ/888:890 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.3 | |
| IL_6I7O_208 | 1/BQ/873:875, 1/BQ/886:887 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.17 | |
| IL_6I7O_209 | 1/BQ/907:909, 1/BQ/919:923 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.7 | |
| IL_6I7O_210 | 1/BQ/954:956, 1/BQ/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_86319.3 | |
| IL_6I7O_211 | 1/BQ/969:970, 1/BQ/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.5 | |
| IL_6I7O_212 | 1/BQ/977:982, 1/BQ/1101:1104 | No text annotation Not in a motif group | homologous IL_8C3A_039 IL_59027.1 | |
| IL_6I7O_213 | 1/BQ/983:985, 1/BQ/1099:1100 | Single bulged G Not in a motif group | homologous IL_5TBW_037 IL_00225.4 | |
| IL_6I7O_214 | 1/BQ/991:997, 1/BQ/1052:1058 | No text annotation Not in a motif group | homologous IL_8C3A_041 IL_93830.3 | |
| IL_6I7O_215 | 1/BQ/997:998, 1/BQ/1050:1052 | No text annotation Not in a motif group | homologous IL_8C3A_042 IL_42622.5 | |
| IL_6I7O_216 | 1/BQ/999:1004, 1/BQ/1046:1049 | No text annotation Not in a motif group | homologous IL_8C3A_043 IL_02509.2 | |
| IL_6I7O_217 | 1/BQ/1006:1009, 1/BQ/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.4 | |
| IL_6I7O_218 | 1/BQ/1009:1011, 1/BQ/1039:1041 | No text annotation Not in a motif group | homologous IL_5TBW_042 IL_86319.3 | |
| IL_6I7O_219 | 1/BQ/1012:1018, 1/BQ/1034:1038 | No text annotation Not in a motif group | ||
| IL_6I7O_220 | 1/BQ/1069:1071, 1/BQ/1087:1089 | No text annotation Not in a motif group | homologous IL_8C3A_047 IL_86319.3 | |
| IL_6I7O_221 | 1/BQ/1074:1076, 1/BQ/1083:1084 | No text annotation Not in a motif group | homologous IL_8C3A_048 IL_00225.4 | |
| IL_6I7O_222 | 1/BQ/1120:1122, 1/BQ/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_86319.3 | |
| IL_6I7O_223 | 1/BQ/1167:1171, 1/BQ/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.3 | |
| IL_6I7O_224 | 1/BQ/1173:1180, 1/BQ/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.8 | |
| IL_6I7O_225 | 1/BQ/1180:1182, 1/BQ/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.17 | |
| IL_6I7O_226 | 1/BQ/1187:1194, 1/BQ/1314:1319 | No text annotation Not in a motif group | homologous IL_5TBW_051 IL_27086.1 | |
| IL_6I7O_227 | 1/BQ/1194:1205, 1/BQ/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_6I7O_228 | 1/BQ/1207:1209, 1/BQ/1296:1297 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.17 | |
| IL_6I7O_229 | 1/BQ/1218:1226, 1/BQ/1283:1287 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.5 | |
| IL_6I7O_230 | 1/BQ/1234:1238, 1/BQ/1250:1254 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_6I7O_231 | 1/BQ/1262:1266, 1/BQ/1275:1277 | No text annotation Not in a motif group | homologous IL_8C3A_059 IL_05564.3 | |
| IL_6I7O_232 | 1/BQ/1376:1378, 1/BQ/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.5 | |
| IL_6I7O_233 | 1/BQ/1385:1387, 1/BQ/1420:1421 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.7 | |
| IL_6I7O_234 | 1/BQ/1388:1395, 1/BQ/1415:1419 | No text annotation Not in a motif group | homologous IL_8C3A_063 IL_70923.3 | |
| IL_6I7O_235 | 1/BQ/1398:1400, 1/BQ/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.7 | |
| IL_6I7O_236 | 1/BQ/1444:1450, 1/BQ/2354:2359 | No text annotation Not in a motif group | homologous IL_8C3A_065 IL_76042.3 | |
| IL_6I7O_237 | 1/BQ/1492:1495, 1/BQ/1835:1836 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7A0S_046 IL_50694.3 | |
| IL_6I7O_238 | 1/BQ/1500:1505, 1/BQ/1513:1516 | No text annotation Not in a motif group | homologous IL_8C3A_066 IL_93630.2 | |
| IL_6I7O_239 | 1/BQ/1532:1536, 1/BQ/1585:1590 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.3 | |
| IL_6I7O_240 | 1/BQ/1618:1621, 1/BQ/1824:1826 | No text annotation Not in a motif group | homologous IL_8C3A_070 IL_84698.1 | |
| IL_6I7O_241 | 1/BQ/1623:1625, 1/BQ/1818:1822 | No text annotation Not in a motif group | ||
| IL_6I7O_242 | 1/BQ/1627:1631, 1/BQ/1811:1816 | No text annotation Not in a motif group | geometric IL_5TBW_066 IL_48431.1 | |
| IL_6I7O_243 | 1/BQ/1645:1649, 1/BQ/1806:1810 | Triple sheared Not in a motif group | geometric IL_5TBW_067 IL_56467.9 | |
| IL_6I7O_244 | 1/BQ/1661:1663, 1/BQ/1786:1788 | No text annotation Not in a motif group | homologous IL_8C3A_074 IL_86319.3 | |
| IL_6I7O_245 | 1/BQ/1669:1670, 1/BQ/1778:1780 | Single bulged C Not in a motif group | homologous IL_5TBW_069 IL_61258.13 | |
| IL_6I7O_246 | 1/BQ/1670:1671, 1/BQ/1776:1778 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.5 | |
| IL_6I7O_247 | 1/BQ/1694:1698, 1/BQ/1747:1752 | No text annotation Not in a motif group | homologous IL_8C3A_077 IL_69313.1 | |
| IL_6I7O_248 | 1/BQ/1702:1707, 1/BQ/1737:1743 | No text annotation Not in a motif group | homologous IL_8C3A_078 IL_39753.1 | |
| IL_6I7O_249 | 1/BQ/1711:1717, 1/BQ/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_6I7O_250 | 1/BQ/1883:1889, 1/BQ/2346:2349 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_49460.2 | |
| IL_6I7O_251 | 1/BQ/1895:1897, 1/BQ/2338:2340 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.8 | |
| IL_6I7O_252 | 1/BQ/1898:1901, 1/BQ/2336:2337 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.3 | |
| IL_6I7O_253 | 1/BQ/1901:1906, 1/BQ/2333:2336 | No text annotation Not in a motif group | homologous IL_8C3A_083 IL_76273.2 | |
| IL_6I7O_254 | 1/BQ/1918:1923, 1/BQ/1928:1934 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.3 | |
| IL_6I7O_255 | 1/BQ/1940:1942, 1/BQ/2106:2108 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_86319.3 | |
| IL_6I7O_256 | 1/BQ/1947:1948, 1/BQ/2098:2101 | No text annotation Not in a motif group | homologous IL_5TBW_080 IL_74125.1 | |
| IL_6I7O_257 | 1/BQ/2128:2129, 1/BQ/2323:2325 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_37497.7 | |
| IL_6I7O_258 | 1/BQ/2156:2161, 1/BQ/2173:2180 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_6I7O_259 | 1/BQ/2196:2199, 1/BQ/2245:2246 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.4 | |
| IL_6I7O_260 | 1/BQ/2200:2201, 1/BQ/2241:2244 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.3 | |
| IL_6I7O_261 | 1/BQ/2204:2206, 1/BQ/2237:2238 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.5 | |
| IL_6I7O_262 | 1/BQ/2206:2210, 1/BQ/2235:2237 | No text annotation Not in a motif group | ||
| IL_6I7O_263 | 1/BQ/2211:2217, 1/BQ/2228:2234 | No text annotation Not in a motif group | homologous IL_8C3A_093 IL_36973.6 | |
| IL_6I7O_264 | 1/BQ/2276:2277, 1/BQ/2307:2310 | No text annotation Not in a motif group | homologous IL_8C3A_094 IL_59677.3 | |
| IL_6I7O_265 | 1/BQ/2277:2288, 1/BQ/2304:2307 | No text annotation Not in a motif group | geometric IL_5TBW_090 IL_81589.2 | |
| IL_6I7O_266 | 1/BQ/2391:2394, 1/BQ/2986:2988 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.3 | |
| IL_6I7O_267 | 1/BQ/2396:2398, 1/BQ/2981:2984 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_6I7O_268 | 1/BQ/2409:2411, 1/BQ/2811:2812 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.17 | |
| IL_6I7O_269 | 1/BQ/2412:2413, 1/BQ/2807:2810 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.5 | |
| IL_6I7O_270 | 1/BQ/2423:2425, 1/BQ/2604:2607 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.8 | |
| IL_6I7O_271 | 1/BQ/2519:2526, 1/BQ/2584:2588 | No text annotation Not in a motif group | ||
| IL_6I7O_272 | 1/BQ/2614:2615, 1/BQ/2625:2627 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.7 | |
| IL_6I7O_273 | 1/BQ/2666:2668, 1/BQ/2686:2690 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5TBW_099 IL_38958.8 | |
| IL_6I7O_274 | 1/BQ/2714:2716, 1/BQ/2740:2741 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_37497.7 | |
| IL_6I7O_275 | 1/BQ/2718:2721, 1/BQ/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.4 | |
| IL_6I7O_276 | 1/BQ/2770:2773, 1/BQ/2787:2788 | No text annotation Not in a motif group | homologous IL_8C3A_110 IL_76488.5 | |
| IL_6I7O_277 | 1/BQ/2823:2824, 1/BQ/2865:2867 | Major groove platform Not in a motif group | homologous IL_5TBW_102 IL_27635.4 | |
| IL_6I7O_278 | 1/BQ/2824:2826, 1/BQ/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_86319.3 | |
| IL_6I7O_279 | 1/BQ/2826:2828, 1/BQ/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.3 | |
| IL_6I7O_280 | 1/BQ/2828:2830, 1/BQ/2858:2862 | No text annotation Not in a motif group | homologous IL_5TBW_105 IL_92788.3 | |
| IL_6I7O_281 | 1/BQ/2835:2839, 1/BQ/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_6I7O_282 | 1/BQ/2876:2877, 1/BQ/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.3 | |
| IL_6I7O_283 | 1/BQ/2879:2881, 1/BQ/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.3 | |
| IL_6I7O_284 | 1/BQ/2881:2882, 1/BQ/2940:2943 | No text annotation Not in a motif group | homologous IL_8C3A_117 IL_71530.3 | |
| IL_6I7O_285 | 1/BQ/2889:2891, 1/BQ/2912:2914 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_86319.3 | |
| IL_6I7O_286 | 1/BQ/2891:2892, 1/BQ/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_111 IL_95601.4 | |
| IL_6I7O_287 | 1/BQ/2918:2920, 1/BQ/2926:2928 | No text annotation Not in a motif group | homologous IL_8C3A_120 IL_86319.3 | |
| IL_6I7O_288 | 1/BQ/2960:2961, 1/BQ/2970:2972 | Single bulged A Not in a motif group | geometric IL_1U9S_001 IL_37497.7 | |
| IL_6I7O_289 | 1/BQ/3004:3007, 1/BQ/3139:3144 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.11 | |
| IL_6I7O_290 | 1/BQ/3012:3014, 1/BQ/3040:3042 | No text annotation Not in a motif group | homologous IL_5TBW_115 IL_86319.3 | |
| IL_6I7O_291 | 1/BQ/3018:3025, 1/BQ/3030:3036 | No text annotation Not in a motif group | homologous IL_8C3A_125 IL_04346.8 | |
| IL_6I7O_292 | 1/BQ/3047:3051, 1/BQ/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_6I7O_293 | 1/BQ/3054:3059, 1/BQ/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.2 | |
| IL_6I7O_294 | 1/BQ/3063:3064, 1/BQ/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.3 | |
| IL_6I7O_295 | 1/BQ/3103:3107, 1/BQ/3127:3131 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.3 | |
| IL_6I7O_296 | 1/BQ/3164:3166, 1/BQ/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_86319.3 | |
| IL_6I7O_297 | 1/BQ/3168:3170, 1/BQ/3280:3282 | No text annotation Not in a motif group | homologous IL_5TBW_122 IL_86319.3 | |
| IL_6I7O_298 | 1/BQ/3177:3179, 1/BQ/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.7 | |
| IL_6I7O_299 | 1/BQ/3179:3188, 1/BQ/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_6I7O_300 | 1/BQ/3193:3194, 1/BQ/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.17 | |
| IL_6I7O_301 | 1/BQ/3225:3229, 1/BQ/3258:3260 | No text annotation Not in a motif group | homologous IL_8C3A_133 IL_19389.6 | |
| IL_6I7O_302 | 1/BQ/3233:3235, 1/BQ/3252:3254 | No text annotation Not in a motif group | geometric IL_5J7L_061 IL_86319.3 | |
| IL_6I7O_303 | 1/BQ/3235:3238, 1/BQ/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_128 IL_30621.4 | |
| IL_6I7O_304 | 1/BQ/3300:3303, 1/BQ/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.4 | |
| IL_6I7O_305 | 1/BQ/3318:3320, 1/BQ/3387:3388 | Single bulged U Not in a motif group | geometric IL_5J7L_298 IL_83039.17 | |
| IL_6I7O_306 | 1/BQ/3324:3325, 1/BQ/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.17 | |
| IL_6I7O_307 | 1/BQ/3328:3330, 1/BQ/3373:3378 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.3 | |
| IL_6I7O_308 | 1/BQ/3332:3337, 1/BQ/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.6 | |
| IL_6I7O_309 | 1/BQ/3340:3342, 1/BQ/3363:3364 | No text annotation Not in a motif group | ||
| IL_6I7O_310 | 1/BQ/3342:3345, 1/BQ/3360:3363 | Double sheared Not in a motif group | geometric IL_4V9F_100 IL_09705.11 | |
| IL_6I7O_311 | 1/BQ/3349:3350, 1/BQ/3353:3356 | No text annotation Not in a motif group | homologous IL_8C3A_142 IL_59677.3 | |
| IL_6I7O_312 | 1/BR/15:16, 1/BR/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.7 | |
| IL_6I7O_313 | 1/BR/21:27, 1/BR/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_6I7O_314 | 1/BR/28:29, 1/BR/49:52 | Minor groove platform Not in a motif group | homologous IL_5TBW_374 IL_63797.2 | |
| IL_6I7O_315 | 1/BR/29:30, 1/BR/47:49 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.5 | |
| IL_6I7O_316 | 1/BR/32:36, 1/BR/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.7 | |
| IL_6I7O_317 | 1/BR/72:80, 1/BR/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.8 | |
| IL_6I7O_318 | 1/BR/84:87, 1/BR/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_86319.3 | |
| IL_6I7O_319 | 1/BS/64:66, 1/BS/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_43275.2 | |
| IL_6I7O_320 | 1/BS/68:69, 1/BS/89:91 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.17 | |
| IL_6I7O_321 | 1/YQ/3:4, 1/YS/155:156 | No text annotation Not in a motif group | ||
| IL_6I7O_322 | 1/YQ/7:8, 1/YS/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.13 | |
| IL_6I7O_323 | 1/YQ/13:15, 1/YS/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.17 | |
| IL_6I7O_324 | 1/YQ/27:28, 1/YQ/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.5 | |
| IL_6I7O_325 | 1/YQ/31:38, 1/YQ/45:53 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
| IL_6I7O_326 | 1/YQ/82:89, 1/YQ/97:103 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_6I7O_327 | 1/YQ/123:124, 1/YQ/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_6I7O_328 | 1/YQ/125:127, 1/YQ/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_86319.3 | |
| IL_6I7O_329 | 1/YQ/163:165, 1/YQ/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.5 | |
| IL_6I7O_330 | 1/YQ/169:171, 1/YQ/247:253 | No text annotation Not in a motif group | ||
| IL_6I7O_331 | 1/YQ/177:178, 1/YQ/238:241 | No text annotation Not in a motif group | ||
| IL_6I7O_332 | 1/YQ/189:191, 1/YQ/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.17 | |
| IL_6I7O_333 | 1/YQ/337:339, 1/YS/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.7 | |
| IL_6I7O_334 | 1/YQ/376:379, 1/YQ/390:403 | No text annotation Not in a motif group | geometric IL_5TBW_014 IL_60992.7 | |
| IL_6I7O_335 | 1/YQ/404:410, 1/YS/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.7 | |
| IL_6I7O_336 | 1/YQ/429:431, 1/YQ/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_70707.3 | |
| IL_6I7O_338 | 1/YQ/512:513, 1/YQ/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.7 | |
| IL_6I7O_339 | 1/YQ/517:525, 1/YQ/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_6I7O_340 | 1/YQ/531:538, 1/YQ/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_6I7O_341 | 1/YQ/668:670, 1/YQ/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_86319.3 | |
| IL_6I7O_342 | 1/YQ/680:684, 1/YQ/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_6I7O_343 | 1/YQ/725:728, 1/YQ/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.2 | |
| IL_6I7O_344 | 1/YQ/752:753, 1/YQ/779:781 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.7 | |
| IL_6I7O_345 | 1/YQ/755:756, 1/YQ/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.17 | |
| IL_6I7O_346 | 1/YQ/758:763, 1/YQ/768:773 | No text annotation Not in a motif group | homologous IL_5TBW_026 IL_19954.2 | |
| IL_6I7O_347 | 1/YQ/803:805, 1/YQ/938:940 | No text annotation Not in a motif group | homologous IL_8C3A_029 IL_86319.3 | |
| IL_6I7O_348 | 1/YQ/805:809, 1/YQ/931:938 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.7 | |
| IL_6I7O_349 | 1/YQ/828:829, 1/YQ/895:897 | No text annotation Not in a motif group | homologous IL_8C3A_031 IL_37497.7 | |
| IL_6I7O_350 | 1/YQ/833:834, 1/YQ/859:861 | No text annotation Not in a motif group | homologous IL_8C3A_032 IL_00225.4 | |
| IL_6I7O_351 | 1/YQ/834:838, 1/YQ/855:859 | No text annotation Not in a motif group | homologous IL_8C3A_033 IL_56467.9 | |
| IL_6I7O_352 | 1/YQ/869:872, 1/YQ/888:890 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_05564.3 | |
| IL_6I7O_353 | 1/YQ/873:875, 1/YQ/886:887 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.17 | |
| IL_6I7O_354 | 1/YQ/907:909, 1/YQ/919:923 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.7 | |
| IL_6I7O_355 | 1/YQ/954:956, 1/YQ/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_86319.3 | |
| IL_6I7O_356 | 1/YQ/969:970, 1/YQ/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.5 | |
| IL_6I7O_357 | 1/YQ/977:982, 1/YQ/1101:1104 | No text annotation Not in a motif group | homologous IL_8C3A_039 IL_59027.1 | |
| IL_6I7O_358 | 1/YQ/983:985, 1/YQ/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.4 | |
| IL_6I7O_359 | 1/YQ/991:997, 1/YQ/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5TBW_038 IL_93830.3 | |
| IL_6I7O_360 | 1/YQ/997:998, 1/YQ/1050:1052 | Minor groove platform Not in a motif group | geometric IL_6DLR_003 IL_42622.5 | |
| IL_6I7O_361 | 1/YQ/999:1004, 1/YQ/1046:1049 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_02509.2 | |
| IL_6I7O_362 | 1/YQ/1006:1009, 1/YQ/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.4 | |
| IL_6I7O_363 | 1/YQ/1009:1011, 1/YQ/1039:1041 | No text annotation Not in a motif group | homologous IL_5TBW_042 IL_86319.3 | |
| IL_6I7O_364 | 1/YQ/1012:1018, 1/YQ/1034:1038 | No text annotation Not in a motif group | ||
| IL_6I7O_365 | 1/YQ/1069:1071, 1/YQ/1087:1089 | No text annotation Not in a motif group | homologous IL_8C3A_047 IL_86319.3 | |
| IL_6I7O_366 | 1/YQ/1074:1076, 1/YQ/1083:1084 | Single bulged A Not in a motif group | geometric IL_5TBW_045 IL_37497.7 | |
| IL_6I7O_367 | 1/YQ/1120:1122, 1/YQ/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_86319.3 | |
| IL_6I7O_368 | 1/YQ/1123:1125, 1/YQ/1133:1135 | No text annotation Not in a motif group | homologous IL_8C3A_050 IL_52767.5 | |
| IL_6I7O_369 | 1/YQ/1167:1171, 1/YQ/1328:1332 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.3 | |
| IL_6I7O_370 | 1/YQ/1173:1180, 1/YQ/1325:1326 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5TBW_049 IL_15861.8 | |
| IL_6I7O_371 | 1/YQ/1180:1182, 1/YQ/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.17 | |
| IL_6I7O_372 | 1/YQ/1187:1194, 1/YQ/1314:1319 | No text annotation Not in a motif group | homologous IL_5TBW_051 IL_27086.1 | |
| IL_6I7O_373 | 1/YQ/1194:1205, 1/YQ/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_6I7O_374 | 1/YQ/1207:1209, 1/YQ/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.17 | |
| IL_6I7O_375 | 1/YQ/1218:1226, 1/YQ/1283:1287 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.5 | |
| IL_6I7O_376 | 1/YQ/1234:1238, 1/YQ/1250:1254 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_6I7O_377 | 1/YQ/1262:1266, 1/YQ/1275:1277 | No text annotation Not in a motif group | homologous IL_8C3A_059 IL_05564.3 | |
| IL_6I7O_378 | 1/YQ/1376:1378, 1/YQ/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.5 | |
| IL_6I7O_379 | 1/YQ/1385:1387, 1/YQ/1420:1421 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.7 | |
| IL_6I7O_380 | 1/YQ/1388:1395, 1/YQ/1415:1419 | No text annotation Not in a motif group | homologous IL_8C3A_063 IL_70923.3 | |
| IL_6I7O_381 | 1/YQ/1398:1400, 1/YQ/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.7 | |
| IL_6I7O_382 | 1/YQ/1444:1450, 1/YQ/2354:2359 | No text annotation Not in a motif group | homologous IL_8C3A_065 IL_76042.3 | |
| IL_6I7O_383 | 1/YQ/1492:1495, 1/YQ/1835:1836 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7A0S_046 IL_50694.3 | |
| IL_6I7O_384 | 1/YQ/1500:1505, 1/YQ/1513:1516 | No text annotation Not in a motif group | homologous IL_8C3A_066 IL_93630.2 | |
| IL_6I7O_385 | 1/YQ/1532:1536, 1/YQ/1585:1590 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.3 | |
| IL_6I7O_386 | 1/YQ/1618:1621, 1/YQ/1824:1826 | No text annotation Not in a motif group | homologous IL_8C3A_070 IL_84698.1 | |
| IL_6I7O_387 | 1/YQ/1623:1625, 1/YQ/1818:1822 | No text annotation Not in a motif group | homologous IL_8C3A_071 IL_43275.2 | |
| IL_6I7O_388 | 1/YQ/1627:1631, 1/YQ/1811:1816 | No text annotation Not in a motif group | homologous IL_8C3A_072 IL_48431.1 | |
| IL_6I7O_389 | 1/YQ/1645:1649, 1/YQ/1806:1810 | No text annotation Not in a motif group | homologous IL_8C3A_073 IL_56467.9 | |
| IL_6I7O_390 | 1/YQ/1661:1663, 1/YQ/1786:1788 | No text annotation Not in a motif group | homologous IL_5TBW_068 IL_86319.3 | |
| IL_6I7O_391 | 1/YQ/1669:1670, 1/YQ/1778:1780 | Single bulged C Not in a motif group | geometric IL_5TBW_069 IL_61258.13 | |
| IL_6I7O_392 | 1/YQ/1670:1671, 1/YQ/1776:1778 | No text annotation Not in a motif group | homologous IL_8C3A_076 IL_76488.5 | |
| IL_6I7O_393 | 1/YQ/1694:1698, 1/YQ/1747:1752 | No text annotation Not in a motif group | homologous IL_8C3A_077 IL_69313.1 | |
| IL_6I7O_394 | 1/YQ/1702:1707, 1/YQ/1737:1743 | No text annotation Not in a motif group | homologous IL_8C3A_078 IL_39753.1 | |
| IL_6I7O_395 | 1/YQ/1711:1717, 1/YQ/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_6I7O_396 | 1/YQ/1883:1889, 1/YQ/2346:2349 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_49460.2 | |
| IL_6I7O_397 | 1/YQ/1895:1897, 1/YQ/2338:2340 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.8 | |
| IL_6I7O_398 | 1/YQ/1898:1901, 1/YQ/2336:2337 | No text annotation Not in a motif group | homologous IL_8C3A_082 IL_50694.3 | |
| IL_6I7O_399 | 1/YQ/1901:1906, 1/YQ/2333:2336 | Intercalated tWH Not in a motif group | geometric IL_4V9F_062 IL_76273.2 | |
| IL_6I7O_400 | 1/YQ/1918:1923, 1/YQ/1928:1934 | No text annotation Not in a motif group | homologous IL_8C3A_084 IL_65969.3 | |
| IL_6I7O_401 | 1/YQ/1940:1942, 1/YQ/2106:2108 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_86319.3 | |
| IL_6I7O_402 | 1/YQ/1947:1948, 1/YQ/2098:2101 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_6I7O_403 | 1/YQ/2128:2129, 1/YQ/2323:2325 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_37497.7 | |
| IL_6I7O_404 | 1/YQ/2156:2161, 1/YQ/2173:2180 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_6I7O_405 | 1/YQ/2196:2199, 1/YQ/2245:2246 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.4 | |
| IL_6I7O_406 | 1/YQ/2200:2201, 1/YQ/2241:2244 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.3 | |
| IL_6I7O_407 | 1/YQ/2204:2210, 1/YQ/2235:2238 | No text annotation Not in a motif group | ||
| IL_6I7O_408 | 1/YQ/2211:2217, 1/YQ/2228:2234 | No text annotation Not in a motif group | homologous IL_5TBW_088 IL_36973.6 | |
| IL_6I7O_409 | 1/YQ/2276:2277, 1/YQ/2307:2310 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_089 IL_59677.3 | |
| IL_6I7O_410 | 1/YQ/2277:2288, 1/YQ/2304:2307 | No text annotation Not in a motif group | homologous IL_8C3A_095 IL_81589.2 | |
| IL_6I7O_411 | 1/YQ/2391:2394, 1/YQ/2986:2988 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.3 | |
| IL_6I7O_412 | 1/YQ/2396:2398, 1/YQ/2981:2984 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_54678.5 | |
| IL_6I7O_413 | 1/YQ/2409:2411, 1/YQ/2811:2812 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.17 | |
| IL_6I7O_414 | 1/YQ/2412:2413, 1/YQ/2807:2810 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.5 | |
| IL_6I7O_415 | 1/YQ/2423:2425, 1/YQ/2604:2607 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.8 | |
| IL_6I7O_416 | 1/YQ/2519:2526, 1/YQ/2584:2588 | No text annotation Not in a motif group | ||
| IL_6I7O_417 | 1/YQ/2614:2615, 1/YQ/2625:2627 | No text annotation Not in a motif group | homologous IL_8C3A_107 IL_38186.1 | |
| IL_6I7O_418 | 1/YQ/2666:2668, 1/YQ/2686:2690 | No text annotation Not in a motif group | homologous IL_8C3A_108 IL_38958.8 | |
| IL_6I7O_419 | 1/YQ/2714:2716, 1/YQ/2740:2741 | Single bulged A Not in a motif group | geometric IL_5WWT_001 IL_37497.7 | |
| IL_6I7O_420 | 1/YQ/2718:2721, 1/YQ/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.4 | |
| IL_6I7O_421 | 1/YQ/2770:2773, 1/YQ/2787:2788 | Single stack bend with bulge Not in a motif group | homologous IL_5TBW_101 IL_76488.5 | |
| IL_6I7O_422 | 1/YQ/2823:2824, 1/YQ/2865:2867 | Major groove platform Not in a motif group | homologous IL_5TBW_102 IL_27635.4 | |
| IL_6I7O_423 | 1/YQ/2824:2826, 1/YQ/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_86319.3 | |
| IL_6I7O_424 | 1/YQ/2826:2828, 1/YQ/2862:2863 | Major groove platform Not in a motif group | homologous IL_5TBW_104 IL_76223.3 | |
| IL_6I7O_425 | 1/YQ/2828:2831, 1/YQ/2857:2862 | No text annotation Not in a motif group | ||
| IL_6I7O_426 | 1/YQ/2835:2839, 1/YQ/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_6I7O_427 | 1/YQ/2876:2877, 1/YQ/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.3 | |
| IL_6I7O_428 | 1/YQ/2879:2881, 1/YQ/2943:2947 | No text annotation Not in a motif group | homologous IL_8C3A_116 IL_90933.3 | |
| IL_6I7O_429 | 1/YQ/2881:2882, 1/YQ/2940:2943 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.3 | |
| IL_6I7O_430 | 1/YQ/2889:2891, 1/YQ/2912:2914 | No text annotation Not in a motif group | homologous IL_8C3A_118 IL_86319.3 | |
| IL_6I7O_431 | 1/YQ/2891:2892, 1/YQ/2909:2912 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_111 IL_95601.4 | |
| IL_6I7O_432 | 1/YQ/2918:2920, 1/YQ/2926:2928 | No text annotation Not in a motif group | homologous IL_5TBW_112 IL_86319.3 | |
| IL_6I7O_433 | 1/YQ/2960:2961, 1/YQ/2970:2972 | Single bulged A Not in a motif group | geometric IL_1U9S_001 IL_37497.7 | |
| IL_6I7O_434 | 1/YQ/3004:3007, 1/YQ/3139:3144 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.11 | |
| IL_6I7O_435 | 1/YQ/3012:3014, 1/YQ/3040:3042 | No text annotation Not in a motif group | homologous IL_5TBW_115 IL_86319.3 | |
| IL_6I7O_436 | 1/YQ/3018:3025, 1/YQ/3030:3036 | No text annotation Not in a motif group | homologous IL_8C3A_125 IL_04346.8 | |
| IL_6I7O_437 | 1/YQ/3047:3051, 1/YQ/3091:3094 | No text annotation Not in a motif group | homologous IL_8C3A_126 IL_37712.2 | |
| IL_6I7O_438 | 1/YQ/3054:3059, 1/YQ/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.2 | |
| IL_6I7O_439 | 1/YQ/3063:3064, 1/YQ/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.3 | |
| IL_6I7O_440 | 1/YQ/3103:3107, 1/YQ/3127:3131 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.3 | |
| IL_6I7O_441 | 1/YQ/3164:3166, 1/YQ/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_86319.3 | |
| IL_6I7O_442 | 1/YQ/3168:3170, 1/YQ/3280:3282 | No text annotation Not in a motif group | homologous IL_5TBW_122 IL_86319.3 | |
| IL_6I7O_443 | 1/YQ/3177:3179, 1/YQ/3210:3211 | Single bulged A Not in a motif group | homologous IL_5TBW_123 IL_37497.7 | |
| IL_6I7O_444 | 1/YQ/3179:3188, 1/YQ/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_6I7O_445 | 1/YQ/3225:3229, 1/YQ/3258:3260 | No text annotation Not in a motif group | homologous IL_8C3A_133 IL_19389.6 | |
| IL_6I7O_446 | 1/YQ/3233:3235, 1/YQ/3252:3254 | No text annotation Not in a motif group | homologous IL_5TBW_127 IL_86319.3 | |
| IL_6I7O_447 | 1/YQ/3235:3238, 1/YQ/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_280D_001 IL_30621.4 | |
| IL_6I7O_448 | 1/YQ/3300:3303, 1/YQ/3311:3314 | No text annotation Not in a motif group | homologous IL_8C3A_135 IL_30621.4 | |
| IL_6I7O_449 | 1/YQ/3318:3320, 1/YQ/3387:3388 | No text annotation Not in a motif group | homologous IL_8C3A_136 IL_83039.17 | |
| IL_6I7O_450 | 1/YQ/3324:3325, 1/YQ/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.17 | |
| IL_6I7O_451 | 1/YQ/3328:3330, 1/YQ/3373:3378 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.3 | |
| IL_6I7O_452 | 1/YQ/3332:3337, 1/YQ/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.6 | |
| IL_6I7O_453 | 1/YQ/3340:3342, 1/YQ/3363:3364 | No text annotation Not in a motif group | ||
| IL_6I7O_454 | 1/YQ/3342:3345, 1/YQ/3360:3363 | Double sheared Not in a motif group | geometric IL_4V9F_100 IL_09705.11 | |
| IL_6I7O_455 | 1/YQ/3349:3350, 1/YQ/3353:3356 | No text annotation Not in a motif group | homologous IL_8C3A_142 IL_59677.3 | |
| IL_6I7O_456 | 1/YR/15:16, 1/YR/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.7 | |
| IL_6I7O_457 | 1/YR/21:27, 1/YR/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_6I7O_458 | 1/YR/28:29, 1/YR/49:52 | Minor groove platform Not in a motif group | geometric IL_5TBW_374 IL_63797.2 | |
| IL_6I7O_459 | 1/YR/29:30, 1/YR/47:49 | Single stack bend Not in a motif group | homologous IL_5TBW_375 IL_76488.5 | |
| IL_6I7O_460 | 1/YR/32:36, 1/YR/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 NA | |
| IL_6I7O_461 | 1/YR/72:80, 1/YR/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.8 | |
| IL_6I7O_462 | 1/YR/84:87, 1/YR/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_86319.3 | |
| IL_6I7O_463 | 1/YS/44:64, 1/YS/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_6I7O_464 | 1/YS/64:66, 1/YS/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_43275.2 | |
| IL_6I7O_465 | 1/YS/68:69, 1/YS/89:91 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.17 | |
| IL_6I7O_466 | 1/m/10:12, 1/m/23:25 | No text annotation Not in a motif group | geometric IL_5TBW_046 IL_86319.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6I7O_021 | No text annotation | ||
| IL_6I7O_030 | SSU/LSU pseudoknot | ||
| IL_6I7O_031 | Single bulged U | ||
| IL_6I7O_032 | No text annotation | ||
| IL_6I7O_036 | No text annotation | ||
| IL_6I7O_037 | No text annotation | ||
| IL_6I7O_038 | No text annotation | ||
| IL_6I7O_039 | No text annotation | ||
| IL_6I7O_040 | No text annotation | ||
| IL_6I7O_041 | No text annotation | ||
| IL_6I7O_047 | No text annotation | ||
| IL_6I7O_048 | Other IL | ||
| IL_6I7O_049 | tSH-tHW-tHS | ||
| IL_6I7O_053 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6I7O_054 | Single bulged A | ||
| IL_6I7O_055 | Single bulged G | ||
| IL_6I7O_059 | No text annotation | ||
| IL_6I7O_060 | Kink-turn | ||
| IL_6I7O_061 | No text annotation | ||
| IL_6I7O_062 | Single bulged U | ||
| IL_6I7O_063 | Isolated cWS basepair | ||
| IL_6I7O_064 | Minor groove platform related | ||
| IL_6I7O_065 | Single bulged A | ||
| IL_6I7O_066 | Isolated cWH basepair | ||
| IL_6I7O_067 | Minor groove platform | ||
| IL_6I7O_068 | No text annotation | ||
| IL_6I7O_069 | Minor groove platform | ||
| IL_6I7O_070 | No text annotation | ||
| IL_6I7O_071 | Major groove platform; stack outside cWW | ||
| IL_6I7O_072 | No text annotation | ||
| IL_6I7O_073 | No text annotation | ||
| IL_6I7O_074 | Tandem non-canonical cWW pairs | ||
| IL_6I7O_075 | No text annotation | ||
| IL_6I7O_076 | No text annotation | ||
| IL_6I7O_077 | No text annotation | ||
| IL_6I7O_078 | UU cWW | ||
| IL_6I7O_079 | No text annotation | ||
| IL_6I7O_080 | AA cWW | ||
| IL_6I7O_081 | Double sheared | ||
| IL_6I7O_082 | Single bulged U | ||
| IL_6I7O_083 | No text annotation | ||
| IL_6I7O_084 | Double sheared | ||
| IL_6I7O_085 | No text annotation | ||
| IL_6I7O_086 | Tandem non-canonical cWW pairs | ||
| IL_6I7O_087 | Triple sheared | ||
| IL_6I7O_192 | No text annotation | ||
| IL_6I7O_337 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6I7O_001 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation Not in a motif group | ||
| J3_6I7O_002 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation Not in a motif group | ||
| J3_6I7O_004 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6I7O_005 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_6I7O_006 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_6I7O_007 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation Not in a motif group | homologous J3_8C3A_039 NA | |
| J3_6I7O_013 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA | |
| J3_6I7O_014 | 1/2b/41:42, 1/2b/433:439, 1/2b/464:466 | No text annotation Not in a motif group | ||
| J3_6I7O_015 | 1/2b/633:635, 1/2b/861:865, 1/2b/965:966 | No text annotation Not in a motif group | ||
| J3_6I7O_016 | 1/2b/760:763, 1/2b/773:775, 1/2b/785:790 | No text annotation Not in a motif group | homologous J3_8C3A_035 NA | |
| J3_6I7O_017 | 1/2b/881:884, 1/2b/928:936, 1/2b/943:947 | No text annotation Not in a motif group | ||
| J3_6I7O_018 | 1/2b/1037:1039, 1/2b/1079:1083, 1/2b/1090:1094 | No text annotation Not in a motif group | homologous J3_8C3A_037 NA | |
| J3_6I7O_019 | 1/2b/1161:1164, 1/2b/1581:1587, 1/2b/1609:1616 | No text annotation Not in a motif group | homologous J3_8C3A_038 NA | |
| J3_6I7O_020 | 1/2b/1168:1171, 1/2b/1468:1470, 1/2b/1574:1577 | No text annotation Not in a motif group | homologous J3_8C3A_039 NA | |
| J3_6I7O_021 | 1/2b/1180:1187, 1/2b/1198:1209, 1/2b/1454:1458 | No text annotation Not in a motif group | ||
| J3_6I7O_022 | 1/2b/1215:1220, 1/2b/1263:1267, 1/2b/1442:1448 | No text annotation Not in a motif group | homologous J3_8C3A_041 NA | |
| J3_6I7O_023 | 1/2b/1283:1288, 1/2b/1327:1332, 1/2b/1419:1424 | No text annotation Not in a motif group | ||
| J3_6I7O_024 | 1/2b/1293:1294, 1/2b/1303:1306, 1/2b/1318:1322 | No text annotation Not in a motif group | ||
| J3_6I7O_025 | 1/2b/1336:1338, 1/2b/1386:1389, 1/2b/1412:1415 | No text annotation Not in a motif group | homologous J3_8C3A_043 NA | |
| J3_6I7O_026 | 1/2b/1470:1474, 1/2b/1533:1540, 1/2b/1571:1574 | No text annotation Not in a motif group | homologous J3_8C3A_044 NA | |
| J3_6I7O_027 | 1/BQ/113:123, 1/BQ/149:158, 1/BQ/263:267 | No text annotation Not in a motif group | ||
| J3_6I7O_028 | 1/BQ/369:376, 1/BQ/403:404, 1/BS/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_6I7O_029 | 1/BQ/502:503, 1/BQ/588:597, 1/BQ/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_6I7O_030 | 1/BQ/814:820, 1/BQ/905:907, 1/BQ/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_6I7O_031 | 1/BQ/829:831, 1/BQ/863:867, 1/BQ/892:895 | No text annotation Not in a motif group | homologous J3_8C3A_004 NA | |
| J3_6I7O_032 | 1/BQ/986:987, 1/BQ/1062:1066, 1/BQ/1092:1098 | No text annotation Not in a motif group | ||
| J3_6I7O_033 | 1/BQ/1230:1232, 1/BQ/1256:1262, 1/BQ/1277:1279 | No text annotation Not in a motif group | homologous J3_5TBW_007 NA | |
| J3_6I7O_034 | 1/BQ/1479:1485, 1/BQ/1857:1859, 1/BQ/1871:1874 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_6I7O_035 | 1/BQ/1488:1491, 1/BQ/1837:1843, 1/BQ/1852:1854 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_6I7O_036 | 1/BQ/1526:1531, 1/BQ/1591:1595, 1/BQ/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_6I7O_037 | 1/BQ/1631:1632, 1/BQ/1641:1645, 1/BQ/1810:1811 | No text annotation Not in a motif group | ||
| J3_6I7O_038 | 1/BQ/2432:2435, 1/BQ/2512:2517, 1/BQ/2590:2597 | No text annotation Not in a motif group | homologous J3_8C3A_008 NA | |
| J3_6I7O_039 | 1/BQ/2528:2532, 1/BQ/2547:2563, 1/BQ/2578:2582 | No text annotation Not in a motif group | ||
| J3_6I7O_040 | 1/BQ/2664:2666, 1/BQ/2690:2692, 1/BQ/2701:2706 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_6I7O_041 | 1/BQ/2886:2889, 1/BQ/2914:2916, 1/BQ/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_6I7O_042 | 1/BQ/3298:3300, 1/BQ/3314:3318, 1/BQ/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_6I7O_043 | 1/BR/9:14, 1/BR/66:67, 1/BR/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_6I7O_044 | 1/BS/44:45, 1/BS/58:64, 1/BS/96:100 | No text annotation Not in a motif group | ||
| J3_6I7O_045 | 1/YQ/113:123, 1/YQ/149:158, 1/YQ/263:267 | No text annotation Not in a motif group | ||
| J3_6I7O_046 | 1/YQ/369:376, 1/YQ/403:404, 1/YS/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_6I7O_047 | 1/YQ/502:503, 1/YQ/588:597, 1/YQ/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_6I7O_048 | 1/YQ/814:820, 1/YQ/905:907, 1/YQ/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_6I7O_049 | 1/YQ/829:831, 1/YQ/863:867, 1/YQ/892:895 | No text annotation Not in a motif group | homologous J3_8C3A_004 NA | |
| J3_6I7O_050 | 1/YQ/986:987, 1/YQ/1062:1066, 1/YQ/1092:1098 | No text annotation Not in a motif group | ||
| J3_6I7O_051 | 1/YQ/1230:1232, 1/YQ/1256:1262, 1/YQ/1277:1279 | No text annotation Not in a motif group | homologous J3_5TBW_007 NA | |
| J3_6I7O_052 | 1/YQ/1479:1485, 1/YQ/1857:1859, 1/YQ/1871:1874 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_6I7O_053 | 1/YQ/1488:1491, 1/YQ/1837:1843, 1/YQ/1852:1854 | No text annotation Not in a motif group | homologous J3_8C3A_007 NA | |
| J3_6I7O_054 | 1/YQ/1526:1531, 1/YQ/1591:1595, 1/YQ/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_6I7O_055 | 1/YQ/1631:1632, 1/YQ/1641:1645, 1/YQ/1810:1811 | No text annotation Not in a motif group | ||
| J3_6I7O_056 | 1/YQ/2432:2435, 1/YQ/2512:2517, 1/YQ/2590:2597 | No text annotation Not in a motif group | homologous J3_8C3A_008 NA | |
| J3_6I7O_057 | 1/YQ/2529:2532, 1/YQ/2547:2563, 1/YQ/2578:2581 | No text annotation Not in a motif group | ||
| J3_6I7O_058 | 1/YQ/2664:2666, 1/YQ/2690:2692, 1/YQ/2701:2706 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_6I7O_059 | 1/YQ/2886:2889, 1/YQ/2914:2916, 1/YQ/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_6I7O_060 | 1/YQ/3298:3300, 1/YQ/3314:3318, 1/YQ/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_6I7O_061 | 1/YR/9:14, 1/YR/66:67, 1/YR/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6I7O_003 | No text annotation | ||
| J3_6I7O_008 | No text annotation | ||
| J3_6I7O_009 | No text annotation | ||
| J3_6I7O_010 | No text annotation | ||
| J3_6I7O_011 | No text annotation | ||
| J3_6I7O_012 | No text annotation |
Coloring options: