7B7D Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/2/7:17 | NA | NA |
| 2 | ➜ | 1/2/70:81 | NA | NA |
| 3 | ➜ | 1/2/154:160 | NA | NA |
| 4 | ➜ | 1/2/190:195 | NA | NA |
| 5 | ➜ | 1/2/230:235 | NA | NA |
| 6 | ➜ | 1/2/243:250 | NA | NA |
| 7 | ➜ | 1/2/276:279 | NA | NA |
| 8 | ➜ | 1/2/330:338 | NA | NA |
| 9 | ➜ | 1/2/368:373 | NA | NA |
| 10 | ➜ | 1/2/393:404 | NA | NA |
| 11 | ➜ | 1/2/414:419 | NA | NA |
| 12 | ➜ | 1/2/450:456 | NA | NA |
| 13 | ➜ | 1/2/491:496 | NA | NA |
| 14 | ➜ | 1/2/520:532 | NA | NA |
| 15 | ➜ | 1/2/569:574 | NA | NA |
| 16 | ➜ | 1/2/650:684 | NA | NA |
| 17 | ➜ | 1/2/703:735 | NA | NA |
| 18 | ➜ | 1/2/764:772 | NA | NA |
| 19 | ➜ | 1/2/777:783 | NA | NA |
| 20 | ➜ | 1/2/828:844 | NA | NA |
| 21 | ➜ | 1/2/900:909 | NA | NA |
| 22 | ➜ | 1/2/937:942 | NA | NA |
| 23 | ➜ | 1/2/997:1007 | NA | NA |
| 24 | ➜ | 1/2/1055:1064 | NA | NA |
| 25 | ➜ | 1/2/1084:1089 | NA | NA |
| 26 | ➜ | 1/2/1121:1126 | NA | NA |
| 27 | ➜ | 1/2/1188:1197 | NA | NA |
| 28 | ➜ | 1/2/1238:1247 | NA | NA |
| 29 | ➜ | 1/2/1296:1301 | NA | NA |
| 30 | ➜ | 1/2/1309:1316 | NA | NA |
| 31 | ➜ | 1/2/1359:1364 | NA | NA |
| 32 | ➜ | 1/2/1396:1402 | NA | NA |
| 33 | ➜ | 1/2/1501:1506 | NA | NA |
| 34 | ➜ | 1/2/1550:1561 | NA | NA |
| 35 | ➜ | 1/2/1594:1602 | NA | NA |
| 36 | ➜ | 1/2/1698:1703 | NA | NA |
| 37 | ➜ | 1/2/1778:1783 | NA | NA |
| 38 | ➜ | 1/LA/38:45 | NA | NA |
| 39 | ➜ | 1/LA/69:74 | NA | NA |
| 40 | ➜ | 1/LA/90:96 | NA | NA |
| 41 | ➜ | 1/LA/132:136 | NA | NA |
| 42 | ➜ | 1/LA/194:201 | NA | NA |
| 43 | ➜ | 1/LA/208:212 | NA | NA |
| 44 | ➜ | 1/LA/216:224 | NA | NA |
| 45 | ➜ | 1/LA/278:287 | NA | NA |
| 46 | ➜ | 1/LA/303:312 | NA | NA |
| 47 | ➜ | 1/LA/357:362 | NA | NA |
| 48 | ➜ | 1/LA/382:387 | NA | NA |
| 49 | ➜ | 1/LA/443:492 | NA | NA |
| 50 | ➜ | 1/LA/544:547 | NA | NA |
| 51 | ➜ | 1/LA/599:604 | NA | NA |
| 52 | ➜ | 1/LA/640:649 | NA | NA |
| 53 | ➜ | 1/LA/686:694 | NA | NA |
| 54 | ➜ | 1/LA/707:712 | NA | NA |
| 55 | ➜ | 1/LA/732:737 | NA | NA |
| 56 | ➜ | 1/LA/763:768 | NA | NA |
| 57 | ➜ | 1/LA/844:849 | NA | NA |
| 58 | ➜ | 1/LA/876:885 | NA | NA |
| 59 | ➜ | 1/LA/910:918 | NA | NA |
| 60 | ➜ | 1/LA/958:963 | NA | NA |
| 61 | ➜ | 1/LA/1023:1029 | NA | NA |
| 62 | ➜ | 1/LA/1076:1083 | NA | NA |
| 63 | ➜ | 1/LA/1126:1132 | NA | NA |
| 64 | ➜ | 1/LA/1148:1155 | NA | NA |
| 65 | ➜ | 1/LA/1239:1249 | NA | NA |
| 66 | ➜ | 1/LA/1266:1275 | NA | NA |
| 67 | ➜ | 1/LA/1347:1357 | NA | NA |
| 68 | ➜ | 1/LA/1403:1408 | NA | NA |
| 69 | ➜ | 1/LA/1462:1470 | NA | NA |
| 70 | ➜ | 1/LA/1506:1512 | NA | NA |
| 71 | ➜ | 1/LA/1544:1549 | NA | NA |
| 72 | ➜ | 1/LA/1566:1572 | NA | NA |
| 73 | ➜ | 1/LA/1599:1608 | NA | NA |
| 74 | ➜ | 1/LA/1634:1639 | NA | NA |
| 75 | ➜ | 1/LA/1680:1688 | NA | NA |
| 76 | ➜ | 1/LA/1719:1725 | NA | NA |
| 77 | ➜ | 1/LA/1759:1766 | NA | NA |
| 78 | ➜ | 1/LA/1792:1796 | NA | NA |
| 79 | ➜ | 1/LA/1844:1851 | NA | NA |
| 80 | ➜ | 1/LA/1862:1868 | NA | NA |
| 81 | ➜ | 1/LA/1923:1928 | NA | NA |
| 82 | ➜ | 1/LA/1952:2094 | NA | NA |
| 83 | ➜ | 1/LA/2110:2114 | NA | NA |
| 84 | ➜ | 1/LA/2135:2145 | NA | NA |
| 85 | ➜ | 1/LA/2164:2170 | NA | NA |
| 86 | ➜ | 1/LA/2220:2225 | NA | NA |
| 87 | ➜ | 1/LA/2253:2263 | NA | NA |
| 88 | ➜ | 1/LA/2292:2300 | NA | NA |
| 89 | ➜ | 1/LA/2369:2378 | NA | NA |
| 90 | ➜ | 1/LA/2471:2475 | NA | NA |
| 91 | ➜ | 1/LA/2535:2544 | NA | NA |
| 92 | ➜ | 1/LA/2568:2573 | NA | NA |
| 93 | ➜ | 1/LA/2616:2624 | NA | NA |
| 94 | ➜ | 1/LA/2633:2645 | NA | NA |
| 95 | ➜ | 1/LA/2673:2681 | NA | NA |
| 96 | ➜ | 1/LA/2693:2700 | NA | NA |
| 97 | ➜ | 1/LA/2724:2732 | NA | NA |
| 98 | ➜ | 1/LA/2744:2749 | NA | NA |
| 99 | ➜ | 1/LA/2776:2784 | NA | NA |
| 100 | ➜ | 1/LA/2840:2848 | NA | NA |
| 101 | ➜ | 1/LA/2897:2904 | NA | NA |
| 102 | ➜ | 1/LA/2920:2926 | NA | NA |
| 103 | ➜ | 1/LA/2963:2968 | NA | NA |
| 104 | ➜ | 1/LA/3025:3030 | NA | NA |
| 105 | ➜ | 1/LA/3068:3073 | NA | NA |
| 106 | ➜ | 1/LA/3110:3124 | NA | NA |
| 107 | ➜ | 1/LA/3194:3197 | NA | NA |
| 108 | ➜ | 1/LA/3240:3247 | NA | NA |
| 109 | ➜ | 1/LA/3303:3311 | NA | NA |
| 110 | ➜ | 1/LA/3350:3353 | NA | NA |
| 111 | ➜ | 1/LB/36:41 | NA | NA |
| 112 | ➜ | 1/LB/88:93 | NA | NA |
| 113 | ➜ | 1/LC/69:89 | NA | NA |
| 114 | ➜ | 1/LC/108:114 | NA | NA |
| 115 | ➜ | 1/LC/124:129 | NA | NA |
| 116 | ➜ | 1/Sm/13:22 | NA | NA |
| 117 | ➜ | 1/Sm/31:39 | NA | NA |
| 118 | ➜ | 1/Sm/53:61 | NA | NA |
| 119 | ➜ | 1/Sn/13:22 | NA | NA |
| 120 | ➜ | 1/Sn/31:39 | NA | NA |
| 121 | ➜ | 1/Sn/53:61 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/2/24:26,1/2/600:601 | NA | NA |
| 2 | ➜ | 1/2/35:37,1/2/471:473 | NA | NA |
| 3 | ➜ | 1/2/37:41,1/2/466:471 | NA | NA |
| 4 | ➜ | 1/2/42:48,1/2/431:433 | NA | NA |
| 5 | ➜ | 1/2/50:52,1/2/428:429 | NA | NA |
| 6 | ➜ | 1/2/58:63,1/2/87:89 | NA | NA |
| 7 | ➜ | 1/2/64:69,1/2/82:86 | NA | NA |
| 8 | ➜ | 1/2/109:112,1/2/302:305 | NA | NA |
| 9 | ➜ | 1/2/113:116,1/2/300:301 | NA | NA |
| 10 | ➜ | 1/2/117:122,1/2/295:299 | NA | NA |
| 11 | ➜ | 1/2/144:149,1/2/165:171 | NA | NA |
| 12 | ➜ | 1/2/150:152,1/2/162:164 | NA | NA |
| 13 | ➜ | 1/2/186:189,1/2/196:199 | NA | NA |
| 14 | ➜ | 1/2/204:206,1/2/259:263 | NA | NA |
| 15 | ➜ | 1/2/206:208,1/2/257:259 | NA | NA |
| 16 | ➜ | 1/2/265:267,1/2/288:289 | NA | NA |
| 17 | ➜ | 1/2/270:273,1/2/283:285 | NA | NA |
| 18 | ➜ | 1/2/275:276,1/2/279:281 | NA | NA |
| 19 | ➜ | 1/2/311:316,1/2/348:355 | NA | NA |
| 20 | ➜ | 1/2/318:323,1/2/345:346 | NA | NA |
| 21 | ➜ | 1/2/363:365,1/2/376:381 | NA | NA |
| 22 | ➜ | 1/2/389:391,1/2/406:408 | NA | NA |
| 23 | ➜ | 1/2/411:413,1/2/420:422 | NA | NA |
| 24 | ➜ | 1/2/439:441,1/2/463:464 | NA | NA |
| 25 | ➜ | 1/2/443:447,1/2/460:461 | NA | NA |
| 26 | ➜ | 1/2/447:448,1/2/458:460 | NA | NA |
| 27 | ➜ | 1/2/481:482,1/2/505:507 | NA | NA |
| 28 | ➜ | 1/2/514:516,1/2/536:543 | NA | NA |
| 29 | ➜ | 1/2/517:518,1/2/533:535 | NA | NA |
| 30 | ➜ | 1/2/518:520,1/2/532:533 | NA | NA |
| 31 | ➜ | 1/2/550:557,1/2/587:588 | NA | NA |
| 32 | ➜ | 1/2/557:559,1/2/586:587 | NA | NA |
| 33 | ➜ | 1/2/562:568,1/2/575:583 | NA | NA |
| 34 | ➜ | 1/2/616:622,1/2/1104:1105 | NA | NA |
| 35 | ➜ | 1/2/624:626,1/2/973:975 | NA | NA |
| 36 | ➜ | 1/2/627:631,1/2/968:972 | NA | NA |
| 37 | ➜ | 1/2/646:648,1/2/686:688 | NA | NA |
| 38 | ➜ | 1/2/746:747,1/2/802:805 | NA | NA |
| 39 | ➜ | 1/2/748:750,1/2/799:801 | NA | NA |
| 40 | ➜ | 1/2/751:759,1/2/791:798 | NA | NA |
| 41 | ➜ | 1/2/816:822,1/2/850:857 | NA | NA |
| 42 | ➜ | 1/2/865:866,1/2/962:965 | NA | NA |
| 43 | ➜ | 1/2/867:870,1/2/957:961 | NA | NA |
| 44 | ➜ | 1/2/871:874,1/2/953:956 | NA | NA |
| 45 | ➜ | 1/2/874:878,1/2/950:953 | NA | NA |
| 46 | ➜ | 1/2/885:888,1/2/924:927 | NA | NA |
| 47 | ➜ | 1/2/893:895,1/2/917:919 | NA | NA |
| 48 | ➜ | 1/2/895:899,1/2/910:917 | NA | NA |
| 49 | ➜ | 1/2/985:990,1/2/1014:1016 | NA | NA |
| 50 | ➜ | 1/2/990:994,1/2/1010:1014 | NA | NA |
| 51 | ➜ | 1/2/1034:1036,1/2/1095:1101 | NA | NA |
| 52 | ➜ | 1/2/1041:1044,1/2/1074:1077 | NA | NA |
| 53 | ➜ | 1/2/1051:1053,1/2/1066:1067 | NA | NA |
| 54 | ➜ | 1/2/1111:1118,1/2/1129:1134 | NA | NA |
| 55 | ➜ | 1/2/1146:1147,1/2/1630:1632 | NA | NA |
| 56 | ➜ | 1/2/1149:1151,1/2/1627:1628 | NA | NA |
| 57 | ➜ | 1/2/1157:1160,1/2/1617:1621 | NA | NA |
| 58 | ➜ | 1/2/1173:1175,1/2/1464:1466 | NA | NA |
| 59 | ➜ | 1/2/1178:1179,1/2/1459:1461 | NA | NA |
| 60 | ➜ | 1/2/1213:1215,1/2/1448:1450 | NA | NA |
| 61 | ➜ | 1/2/1224:1230,1/2/1257:1259 | NA | NA |
| 62 | ➜ | 1/2/1230:1233,1/2/1252:1257 | NA | NA |
| 63 | ➜ | 1/2/1234:1236,1/2/1249:1251 | NA | NA |
| 64 | ➜ | 1/2/1268:1270,1/2/1440:1441 | NA | NA |
| 65 | ➜ | 1/2/1271:1276,1/2/1436:1439 | NA | NA |
| 66 | ➜ | 1/2/1276:1278,1/2/1430:1436 | NA | NA |
| 67 | ➜ | 1/2/1280:1281,1/2/1426:1428 | NA | NA |
| 68 | ➜ | 1/2/1290:1292,1/2/1323:1325 | NA | NA |
| 69 | ➜ | 1/2/1306:1308,1/2/1317:1318 | NA | NA |
| 70 | ➜ | 1/2/1339:1342,1/2/1383:1385 | NA | NA |
| 71 | ➜ | 1/2/1345:1348,1/2/1377:1380 | NA | NA |
| 72 | ➜ | 1/2/1352:1354,1/2/1369:1373 | NA | NA |
| 73 | ➜ | 1/2/1389:1391,1/2/1407:1412 | NA | NA |
| 74 | ➜ | 1/2/1480:1487,1/2/1519:1527 | NA | NA |
| 75 | ➜ | 1/2/1488:1494,1/2/1513:1518 | NA | NA |
| 76 | ➜ | 1/2/1495:1498,1/2/1509:1512 | NA | NA |
| 77 | ➜ | 1/2/1540:1545,1/2/1566:1571 | NA | NA |
| 78 | ➜ | 1/2/1636:1638,1/2/1764:1767 | NA | NA |
| 79 | ➜ | 1/2/1638:1641,1/2/1760:1764 | NA | NA |
| 80 | ➜ | 1/2/1642:1644,1/2/1757:1759 | NA | NA |
| 81 | ➜ | 1/2/1644:1647,1/2/1753:1757 | NA | NA |
| 82 | ➜ | 1/2/1650:1652,1/2/1748:1750 | NA | NA |
| 83 | ➜ | 1/2/1653:1656,1/2/1744:1747 | NA | NA |
| 84 | ➜ | 1/2/1656:1658,1/2/1743:1744 | NA | NA |
| 85 | ➜ | 1/2/1665:1667,1/2/1734:1736 | NA | NA |
| 86 | ➜ | 1/2/1669:1672,1/2/1729:1732 | NA | NA |
| 87 | ➜ | 1/2/1672:1674,1/2/1727:1729 | NA | NA |
| 88 | ➜ | 1/2/1675:1678,1/2/1723:1726 | NA | NA |
| 89 | ➜ | 1/2/1678:1682,1/2/1719:1723 | NA | NA |
| 90 | ➜ | 1/2/1687:1690,1/2/1711:1714 | NA | NA |
| 91 | ➜ | 1/2/1693:1695,1/2/1706:1708 | NA | NA |
| 92 | ➜ | 1/LA/7:8,1/LC/150:152 | NA | NA |
| 93 | ➜ | 1/LA/13:15,1/LC/144:145 | NA | NA |
| 94 | ➜ | 1/LA/27:28,1/LA/56:58 | NA | NA |
| 95 | ➜ | 1/LA/31:38,1/LA/45:53 | NA | NA |
| 96 | ➜ | 1/LA/82:89,1/LA/97:103 | NA | NA |
| 97 | ➜ | 1/LA/123:124,1/LA/144:149 | NA | NA |
| 98 | ➜ | 1/LA/125:127,1/LA/141:143 | NA | NA |
| 99 | ➜ | 1/LA/163:165,1/LA/257:258 | NA | NA |
| 100 | ➜ | 1/LA/169:170,1/LA/248:253 | NA | NA |
| 101 | ➜ | 1/LA/177:178,1/LA/238:241 | NA | NA |
| 102 | ➜ | 1/LA/189:191,1/LA/204:205 | NA | NA |
| 103 | ➜ | 1/LA/337:339,1/LC/25:26 | NA | NA |
| 104 | ➜ | 1/LA/376:379,1/LA/390:403 | NA | NA |
| 105 | ➜ | 1/LA/404:410,1/LC/13:19 | NA | NA |
| 106 | ➜ | 1/LA/429:431,1/LA/628:630 | NA | NA |
| 107 | ➜ | 1/LA/512:513,1/LA/577:579 | NA | NA |
| 108 | ➜ | 1/LA/517:525,1/LA/567:573 | NA | NA |
| 109 | ➜ | 1/LA/531:538,1/LA/553:561 | NA | NA |
| 110 | ➜ | 1/LA/668:670,1/LA/792:794 | NA | NA |
| 111 | ➜ | 1/LA/680:684,1/LA/696:700 | NA | NA |
| 112 | ➜ | 1/LA/725:728,1/LA/741:745 | NA | NA |
| 113 | ➜ | 1/LA/752:753,1/LA/779:781 | NA | NA |
| 114 | ➜ | 1/LA/755:756,1/LA/775:777 | NA | NA |
| 115 | ➜ | 1/LA/758:763,1/LA/768:773 | NA | NA |
| 116 | ➜ | 1/LA/803:805,1/LA/938:940 | NA | NA |
| 117 | ➜ | 1/LA/805:809,1/LA/931:938 | NA | NA |
| 118 | ➜ | 1/LA/833:834,1/LA/859:861 | NA | NA |
| 119 | ➜ | 1/LA/834:838,1/LA/855:859 | NA | NA |
| 120 | ➜ | 1/LA/869:872,1/LA/888:890 | NA | NA |
| 121 | ➜ | 1/LA/873:875,1/LA/886:887 | NA | NA |
| 122 | ➜ | 1/LA/907:909,1/LA/919:923 | NA | NA |
| 123 | ➜ | 1/LA/954:956,1/LA/965:967 | NA | NA |
| 124 | ➜ | 1/LA/968:970,1/LA/1111:1114 | NA | NA |
| 125 | ➜ | 1/LA/977:982,1/LA/1101:1104 | NA | NA |
| 126 | ➜ | 1/LA/983:985,1/LA/1099:1100 | NA | NA |
| 127 | ➜ | 1/LA/991:997,1/LA/1052:1058 | NA | NA |
| 128 | ➜ | 1/LA/997:998,1/LA/1050:1052 | NA | NA |
| 129 | ➜ | 1/LA/999:1004,1/LA/1046:1049 | NA | NA |
| 130 | ➜ | 1/LA/1006:1009,1/LA/1041:1044 | NA | NA |
| 131 | ➜ | 1/LA/1009:1011,1/LA/1039:1041 | NA | NA |
| 132 | ➜ | 1/LA/1014:1018,1/LA/1034:1036 | NA | NA |
| 133 | ➜ | 1/LA/1069:1071,1/LA/1087:1089 | NA | NA |
| 134 | ➜ | 1/LA/1074:1076,1/LA/1083:1084 | NA | NA |
| 135 | ➜ | 1/LA/1120:1122,1/LA/1136:1138 | NA | NA |
| 136 | ➜ | 1/LA/1123:1125,1/LA/1133:1135 | NA | NA |
| 137 | ➜ | 1/LA/1167:1171,1/LA/1328:1332 | NA | NA |
| 138 | ➜ | 1/LA/1173:1180,1/LA/1325:1326 | NA | NA |
| 139 | ➜ | 1/LA/1180:1182,1/LA/1324:1325 | NA | NA |
| 140 | ➜ | 1/LA/1187:1194,1/LA/1314:1319 | NA | NA |
| 141 | ➜ | 1/LA/1194:1205,1/LA/1299:1314 | NA | NA |
| 142 | ➜ | 1/LA/1207:1209,1/LA/1296:1297 | NA | NA |
| 143 | ➜ | 1/LA/1218:1226,1/LA/1283:1287 | NA | NA |
| 144 | ➜ | 1/LA/1234:1239,1/LA/1249:1254 | NA | NA |
| 145 | ➜ | 1/LA/1262:1266,1/LA/1275:1277 | NA | NA |
| 146 | ➜ | 1/LA/1376:1378,1/LA/1428:1431 | NA | NA |
| 147 | ➜ | 1/LA/1385:1387,1/LA/1420:1421 | NA | NA |
| 148 | ➜ | 1/LA/1388:1395,1/LA/1415:1419 | NA | NA |
| 149 | ➜ | 1/LA/1398:1400,1/LA/1411:1412 | NA | NA |
| 150 | ➜ | 1/LA/1444:1450,1/LA/2354:2359 | NA | NA |
| 151 | ➜ | 1/LA/1500:1505,1/LA/1513:1516 | NA | NA |
| 152 | ➜ | 1/LA/1532:1536,1/LA/1585:1590 | NA | NA |
| 153 | ➜ | 1/LA/1560:1563,1/LA/1577:1579 | NA | NA |
| 154 | ➜ | 1/LA/1563:1565,1/LA/1574:1577 | NA | NA |
| 155 | ➜ | 1/LA/1565:1566,1/LA/1572:1574 | NA | NA |
| 156 | ➜ | 1/LA/1618:1621,1/LA/1824:1826 | NA | NA |
| 157 | ➜ | 1/LA/1623:1625,1/LA/1818:1822 | NA | NA |
| 158 | ➜ | 1/LA/1627:1631,1/LA/1811:1816 | NA | NA |
| 159 | ➜ | 1/LA/1645:1649,1/LA/1806:1810 | NA | NA |
| 160 | ➜ | 1/LA/1661:1663,1/LA/1786:1788 | NA | NA |
| 161 | ➜ | 1/LA/1669:1670,1/LA/1778:1780 | NA | NA |
| 162 | ➜ | 1/LA/1670:1671,1/LA/1776:1778 | NA | NA |
| 163 | ➜ | 1/LA/1694:1698,1/LA/1747:1752 | NA | NA |
| 164 | ➜ | 1/LA/1702:1707,1/LA/1737:1743 | NA | NA |
| 165 | ➜ | 1/LA/1711:1717,1/LA/1727:1733 | NA | NA |
| 166 | ➜ | 1/LA/1883:1889,1/LA/2346:2349 | NA | NA |
| 167 | ➜ | 1/LA/1895:1897,1/LA/2338:2340 | NA | NA |
| 168 | ➜ | 1/LA/1898:1901,1/LA/2336:2337 | NA | NA |
| 169 | ➜ | 1/LA/1901:1906,1/LA/2333:2336 | NA | NA |
| 170 | ➜ | 1/LA/1918:1923,1/LA/1928:1934 | NA | NA |
| 171 | ➜ | 1/LA/1940:1942,1/LA/2106:2108 | NA | NA |
| 172 | ➜ | 1/LA/1947:1948,1/LA/2098:2101 | NA | NA |
| 173 | ➜ | 1/LA/2128:2129,1/LA/2323:2325 | NA | NA |
| 174 | ➜ | 1/LA/2156:2161,1/LA/2173:2180 | NA | NA |
| 175 | ➜ | 1/LA/2196:2199,1/LA/2245:2246 | NA | NA |
| 176 | ➜ | 1/LA/2200:2201,1/LA/2241:2244 | NA | NA |
| 177 | ➜ | 1/LA/2204:2210,1/LA/2235:2238 | NA | NA |
| 178 | ➜ | 1/LA/2211:2217,1/LA/2228:2234 | NA | NA |
| 179 | ➜ | 1/LA/2276:2277,1/LA/2307:2310 | NA | NA |
| 180 | ➜ | 1/LA/2277:2288,1/LA/2304:2307 | NA | NA |
| 181 | ➜ | 1/LA/2391:2394,1/LA/2986:2988 | NA | NA |
| 182 | ➜ | 1/LA/2396:2398,1/LA/2981:2984 | NA | NA |
| 183 | ➜ | 1/LA/2409:2411,1/LA/2811:2812 | NA | NA |
| 184 | ➜ | 1/LA/2412:2413,1/LA/2807:2810 | NA | NA |
| 185 | ➜ | 1/LA/2423:2425,1/LA/2604:2607 | NA | NA |
| 186 | ➜ | 1/LA/2440:2443,1/LA/2504:2507 | NA | NA |
| 187 | ➜ | 1/LA/2443:2447,1/LA/2499:2504 | NA | NA |
| 188 | ➜ | 1/LA/2450:2463,1/LA/2492:2496 | NA | NA |
| 189 | ➜ | 1/LA/2466:2469,1/LA/2476:2489 | NA | NA |
| 190 | ➜ | 1/LA/2469:2471,1/LA/2475:2476 | NA | NA |
| 191 | ➜ | 1/LA/2520:2526,1/LA/2584:2587 | NA | NA |
| 192 | ➜ | 1/LA/2614:2615,1/LA/2625:2627 | NA | NA |
| 193 | ➜ | 1/LA/2666:2668,1/LA/2686:2690 | NA | NA |
| 194 | ➜ | 1/LA/2718:2721,1/LA/2735:2738 | NA | NA |
| 195 | ➜ | 1/LA/2770:2773,1/LA/2787:2788 | NA | NA |
| 196 | ➜ | 1/LA/2823:2824,1/LA/2865:2867 | NA | NA |
| 197 | ➜ | 1/LA/2824:2826,1/LA/2863:2865 | NA | NA |
| 198 | ➜ | 1/LA/2826:2828,1/LA/2862:2863 | NA | NA |
| 199 | ➜ | 1/LA/2828:2830,1/LA/2858:2862 | NA | NA |
| 200 | ➜ | 1/LA/2835:2839,1/LA/2849:2853 | NA | NA |
| 201 | ➜ | 1/LA/2876:2877,1/LA/2949:2951 | NA | NA |
| 202 | ➜ | 1/LA/2879:2881,1/LA/2943:2947 | NA | NA |
| 203 | ➜ | 1/LA/2881:2882,1/LA/2940:2943 | NA | NA |
| 204 | ➜ | 1/LA/2889:2891,1/LA/2912:2914 | NA | NA |
| 205 | ➜ | 1/LA/2891:2892,1/LA/2909:2912 | NA | NA |
| 206 | ➜ | 1/LA/2918:2920,1/LA/2926:2928 | NA | NA |
| 207 | ➜ | 1/LA/2960:2961,1/LA/2970:2972 | NA | NA |
| 208 | ➜ | 1/LA/3004:3007,1/LA/3139:3144 | NA | NA |
| 209 | ➜ | 1/LA/3012:3014,1/LA/3040:3042 | NA | NA |
| 210 | ➜ | 1/LA/3018:3025,1/LA/3030:3036 | NA | NA |
| 211 | ➜ | 1/LA/3047:3051,1/LA/3091:3094 | NA | NA |
| 212 | ➜ | 1/LA/3054:3059,1/LA/3084:3088 | NA | NA |
| 213 | ➜ | 1/LA/3063:3064,1/LA/3077:3080 | NA | NA |
| 214 | ➜ | 1/LA/3103:3107,1/LA/3127:3131 | NA | NA |
| 215 | ➜ | 1/LA/3164:3166,1/LA/3284:3286 | NA | NA |
| 216 | ➜ | 1/LA/3168:3170,1/LA/3280:3282 | NA | NA |
| 217 | ➜ | 1/LA/3177:3179,1/LA/3210:3211 | NA | NA |
| 218 | ➜ | 1/LA/3179:3188,1/LA/3204:3210 | NA | NA |
| 219 | ➜ | 1/LA/3193:3194,1/LA/3197:3199 | NA | NA |
| 220 | ➜ | 1/LA/3225:3229,1/LA/3258:3260 | NA | NA |
| 221 | ➜ | 1/LA/3233:3235,1/LA/3252:3254 | NA | NA |
| 222 | ➜ | 1/LA/3235:3238,1/LA/3249:3252 | NA | NA |
| 223 | ➜ | 1/LA/3300:3303,1/LA/3311:3314 | NA | NA |
| 224 | ➜ | 1/LA/3318:3320,1/LA/3387:3388 | NA | NA |
| 225 | ➜ | 1/LA/3324:3325,1/LA/3381:3383 | NA | NA |
| 226 | ➜ | 1/LA/3328:3330,1/LA/3373:3378 | NA | NA |
| 227 | ➜ | 1/LA/3332:3337,1/LA/3367:3371 | NA | NA |
| 228 | ➜ | 1/LA/3340:3342,1/LA/3363:3364 | NA | NA |
| 229 | ➜ | 1/LA/3342:3345,1/LA/3360:3363 | NA | NA |
| 230 | ➜ | 1/LA/3349:3350,1/LA/3353:3356 | NA | NA |
| 231 | ➜ | 1/LB/15:16,1/LB/63:65 | NA | NA |
| 232 | ➜ | 1/LB/21:27,1/LB/53:58 | NA | NA |
| 233 | ➜ | 1/LB/28:29,1/LB/49:52 | NA | NA |
| 234 | ➜ | 1/LB/29:30,1/LB/47:49 | NA | NA |
| 235 | ➜ | 1/LB/32:36,1/LB/41:45 | NA | NA |
| 236 | ➜ | 1/LB/72:80,1/LB/100:106 | NA | NA |
| 237 | ➜ | 1/LB/84:87,1/LB/94:96 | NA | NA |
| 238 | ➜ | 1/LC/44:64,1/LC/96:100 | NA | NA |
| 239 | ➜ | 1/LC/64:66,1/LC/93:96 | NA | NA |
| 240 | ➜ | 1/LC/68:69,1/LC/89:91 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/2/41:42,1/2/433:439,1/2/464:466 | NA | NA |
| 2 | ➜ | 1/2/633:635,1/2/861:865,1/2/965:966 | NA | NA |
| 3 | ➜ | 1/2/760:763,1/2/773:775,1/2/785:790 | NA | NA |
| 4 | ➜ | 1/2/881:884,1/2/928:936,1/2/943:947 | NA | NA |
| 5 | ➜ | 1/2/1037:1039,1/2/1079:1083,1/2/1090:1094 | NA | NA |
| 6 | ➜ | 1/2/1161:1164,1/2/1581:1587,1/2/1609:1616 | NA | NA |
| 7 | ➜ | 1/2/1168:1171,1/2/1468:1470,1/2/1574:1577 | NA | NA |
| 8 | ➜ | 1/2/1180:1187,1/2/1198:1209,1/2/1454:1458 | NA | NA |
| 9 | ➜ | 1/2/1215:1220,1/2/1263:1267,1/2/1442:1448 | NA | NA |
| 10 | ➜ | 1/2/1283:1288,1/2/1327:1332,1/2/1419:1424 | NA | NA |
| 11 | ➜ | 1/2/1293:1294,1/2/1303:1306,1/2/1318:1322 | NA | NA |
| 12 | ➜ | 1/2/1336:1338,1/2/1386:1389,1/2/1412:1415 | NA | NA |
| 13 | ➜ | 1/2/1470:1474,1/2/1533:1540,1/2/1571:1574 | NA | NA |
| 14 | ➜ | 1/LA/113:123,1/LA/149:158,1/LA/263:267 | NA | NA |
| 15 | ➜ | 1/LA/369:376,1/LA/403:404,1/LC/19:20 | NA | NA |
| 16 | ➜ | 1/LA/502:503,1/LA/588:597,1/LA/606:611 | NA | NA |
| 17 | ➜ | 1/LA/814:820,1/LA/905:907,1/LA/923:926 | NA | NA |
| 18 | ➜ | 1/LA/828:831,1/LA/863:867,1/LA/892:897 | NA | NA |
| 19 | ➜ | 1/LA/986:987,1/LA/1062:1066,1/LA/1092:1098 | NA | NA |
| 20 | ➜ | 1/LA/1230:1232,1/LA/1256:1262,1/LA/1277:1279 | NA | NA |
| 21 | ➜ | 1/LA/1479:1485,1/LA/1857:1859,1/LA/1871:1874 | NA | NA |
| 22 | ➜ | 1/LA/1488:1491,1/LA/1837:1843,1/LA/1852:1854 | NA | NA |
| 23 | ➜ | 1/LA/1526:1531,1/LA/1591:1595,1/LA/1612:1613 | NA | NA |
| 24 | ➜ | 1/LA/1631:1632,1/LA/1641:1645,1/LA/1810:1811 | NA | NA |
| 25 | ➜ | 1/LA/2432:2435,1/LA/2512:2517,1/LA/2590:2597 | NA | NA |
| 26 | ➜ | 1/LA/2529:2532,1/LA/2547:2563,1/LA/2578:2581 | NA | NA |
| 27 | ➜ | 1/LA/2664:2666,1/LA/2690:2692,1/LA/2701:2706 | NA | NA |
| 28 | ➜ | 1/LA/2886:2889,1/LA/2914:2916,1/LA/2930:2936 | NA | NA |
| 29 | ➜ | 1/LA/3298:3300,1/LA/3314:3318,1/LA/3388:3390 | NA | NA |
| 30 | ➜ | 1/LB/9:14,1/LB/66:67,1/LB/111:112 | NA | NA |
Problematic loops
No problematic loops
Coloring options: