5I4L Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/1/38:45 | homologous HL_5TBW_001 | NA HL_23481.5* | ||
1/1/69:74 | homologous HL_5TBW_002 | NA HL_96776.3* | ||
1/1/90:96 | homologous HL_5TBW_003 | NA HL_67216.5* | ||
1/1/132:136 | homologous HL_5TBW_004 | NA HL_36982.3* | ||
1/1/194:201 | T-loop with 1 bulged base homologous HL_5TBW_005 | NA HL_68493.6* | ||
1/1/208:212 | homologous HL_5TBW_006 | NA HL_98557.5* | ||
1/1/216:224 | homologous HL_5TBW_007 | NA HL_08002.6* | ||
1/1/278:287 | homologous HL_5TBW_008 | NA HL_54035.7* | ||
1/1/357:362 | Other HL homologous HL_5TBW_010 | NA HL_43074.18* | ||
1/1/382:387 | GNRA homologous HL_5TBW_011 | NA HL_43074.18* | ||
1/1/541:550 | homologous HL_5TBW_124 | NA | ||
1/1/599:604 | GNRA homologous HL_5TBW_013 | NA HL_43074.18* | ||
1/1/640:649 | T-loop with 2 stacked bulged bases homologous HL_5TBW_014 | NA HL_33239.17* | ||
1/1/686:694 | homologous HL_5TBW_015 | NA HL_80105.3* | ||
1/1/707:712 | GNRA homologous HL_5TBW_016 | NA HL_43074.18* | ||
1/1/732:737 | GNRA homologous HL_5TBW_017 | NA HL_43074.18* | ||
1/1/958:963 | homologous HL_5TBW_022 | NA HL_15942.5* | ||
1/1/1126:1132 | GNRA homologous HL_5TBW_025 | NA HL_43074.18* | ||
1/1/1148:1155 | homologous HL_5TBW_026 | NA HL_72451.5* | ||
1/1/1403:1408 | GNRA homologous HL_5TBW_030 | NA HL_43074.18* | ||
1/1/2840:2848 | homologous HL_5TBW_061 | NA HL_36421.5* | ||
1/1/2897:2904 | homologous HL_5TBW_062 | NA HL_92681.5* | ||
1/1/2920:2926 | geometric HL_5TBW_063 | NA HL_26055.6* | ||
1/1/3025:3030 | GNRA homologous HL_5TBW_065 | NA HL_43074.18* | ||
1/1/3068:3073 | Ribsomal LSU H95 homologous HL_5TBW_066 | NA HL_67719.1* | ||
1/1/3110:3124 | homologous HL_5TBW_067 | NA HL_56677.5* | ||
1/1/3194:3197 | homologous HL_5TBW_068 | NA HL_46546.1* | ||
1/1/3240:3247 | homologous HL_5TBW_069 | NA HL_27757.1* | ||
1/1/3303:3311 | geometric HL_5TBW_070 | NA HL_05018.6* | ||
1/1/3350:3353 | homologous HL_5TBW_071 | NA HL_69353.7* | ||
1/2/70:81 | homologous HL_4V88_187 | NA HL_07268.1* | ||
1/2/154:160 | Other HL homologous HL_4V88_188 | NA HL_43074.18* | ||
1/2/243:250 | T-loop with 1 bulged base homologous HL_4V88_191 | NA HL_68493.6* | ||
1/2/275:281 | Single bulged U homologous IL_4V88_401 | NA IL_83039.11* | ||
1/2/330:338 | homologous HL_4V88_193 | NA HL_93727.5* | ||
1/2/368:373 | homologous HL_4V88_194 | NA HL_18785.1* | ||
1/2/393:404 | homologous HL_4V88_195 | NA HL_22443.1* | ||
1/2/414:419 | UNCG homologous HL_4V88_196 | NA HL_79299.11* | ||
1/2/450:456 | homologous HL_4V88_197 | NA HL_50374.1* | ||
1/2/520:532 | geometric HL_4V88_199 | NA HL_17086.2* | ||
1/2/937:942 | Other HL homologous HL_4V88_207 | NA HL_43074.18* | ||
1/2/1055:1064 | geometric HL_2ZZM_002 | NA HL_18218.2* | ||
1/2/1084:1089 | Other HL homologous HL_4V88_210 | NA HL_43074.18* | ||
1/2/1594:1602 | homologous HL_4V88_220 | NA HL_01181.4* | ||
1/3/36:41 | NA | NA | ||
1/3/88:93 | NA | NA | ||
1/4/108:114 | homologous HL_5TBW_075 | NA HL_06569.2* | ||
1/4/124:129 | homologous HL_5TBW_076 | NA HL_60357.1* | ||
1/5/38:45 | geometric HL_5TBW_001 | NA HL_23481.5* | ||
1/5/69:74 | homologous HL_5TBW_002 | NA HL_96776.3* | ||
1/5/90:96 | homologous HL_5TBW_003 | NA HL_67216.5* | ||
1/5/132:136 | homologous HL_5TBW_004 | NA HL_36982.3* | ||
1/5/194:201 | T-loop with 1 bulged base homologous HL_5TBW_005 | NA HL_68493.6* | ||
1/5/208:212 | homologous HL_5TBW_006 | NA HL_98557.5* | ||
1/5/216:224 | homologous HL_5TBW_007 | NA HL_08002.6* | ||
1/5/278:287 | homologous HL_5TBW_008 | NA HL_54035.7* | ||
1/5/303:312 | homologous HL_5TBW_009 | NA HL_46142.8* | ||
1/5/357:362 | Other HL homologous HL_5TBW_010 | NA HL_43074.18* | ||
1/5/382:387 | GNRA homologous HL_5TBW_011 | NA HL_43074.18* | ||
1/5/543:548 | geometric HL_6JQ6_004 | NA HL_79299.11* | ||
1/5/599:604 | GNRA homologous HL_5TBW_013 | NA HL_43074.18* | ||
1/5/640:649 | T-loop with 2 stacked bulged bases homologous HL_5TBW_014 | NA HL_33239.17* | ||
1/5/686:694 | homologous HL_5TBW_015 | NA HL_80105.3* | ||
1/5/707:712 | GNRA homologous HL_5TBW_016 | NA HL_43074.18* | ||
1/5/732:737 | GNRA homologous HL_5TBW_017 | NA HL_43074.18* | ||
1/5/763:768 | homologous HL_5TBW_018 | NA HL_00996.1* | ||
1/5/844:849 | GNRA homologous HL_5TBW_019 | NA HL_43074.18* | ||
1/5/876:885 | homologous HL_5TBW_020 | NA HL_39334.5* | ||
1/5/910:918 | homologous HL_5TBW_021 | NA HL_05832.1* | ||
1/5/958:963 | homologous HL_5TBW_022 | NA HL_15942.5* | ||
1/5/1076:1083 | homologous HL_5TBW_024 | NA HL_54035.7* | ||
1/5/1126:1132 | GNRA homologous HL_5TBW_025 | NA HL_43074.18* | ||
1/5/1148:1155 | homologous HL_5TBW_026 | NA HL_72451.5* | ||
1/5/1403:1408 | GNRA homologous HL_5TBW_030 | NA HL_43074.18* | ||
1/5/1462:1470 | T-loop with 2 stacked bulged bases homologous HL_5TBW_031 | NA HL_33239.17* | ||
1/5/1506:1512 | homologous HL_5TBW_032 | NA HL_86880.5* | ||
1/5/1544:1549 | Other HL homologous HL_5TBW_033 | NA HL_43074.18* | ||
1/5/1599:1608 | homologous HL_5TBW_035 | NA HL_78457.4* | ||
1/5/1634:1639 | GNRA homologous HL_5TBW_036 | NA HL_43074.18* | ||
1/5/1680:1688 | homologous HL_5TBW_037 | NA HL_73793.2* | ||
1/5/1719:1725 | homologous HL_5TBW_038 | NA HL_00923.1* | ||
1/5/1792:1796 | homologous HL_5TBW_040 | NA HL_69353.7* | ||
1/5/1844:1851 | homologous HL_5TBW_041 | NA HL_66171.3* | ||
1/5/1862:1868 | GNRA with one bulged base homologous HL_5TBW_042 | NA HL_02361.6* | ||
1/5/1923:1928 | UNCG geometric HL_4V9F_044 | NA HL_79299.11* | ||
1/5/2110:2114 | homologous HL_5TBW_045 | NA HL_99223.1* | ||
1/5/2135:2145 | homologous HL_5TBW_046 | NA HL_43613.4* | ||
1/5/2164:2170 | GNRA homologous HL_5TBW_047 | NA HL_43074.18* | ||
1/5/2220:2225 | Other HL homologous HL_5TBW_048 | NA HL_43074.18* | ||
1/5/2253:2263 | homologous HL_5TBW_049 | NA HL_98248.1* | ||
1/5/2292:2300 | homologous HL_5TBW_050 | NA HL_53760.4* | ||
1/5/2369:2378 | homologous HL_5TBW_051 | NA HL_90642.5* | ||
1/5/2534:2545 | NA | NA | ||
1/5/2568:2573 | NA | NA | ||
1/5/2616:2624 | homologous HL_5TBW_054 | NA HL_46891.3* | ||
1/5/2633:2645 | homologous HL_5TBW_055 | NA HL_19870.5* | ||
1/5/2673:2681 | homologous HL_5TBW_056 | NA HL_76406.3* | ||
1/5/2693:2700 | homologous HL_5TBW_057 | NA HL_46142.8* | ||
1/5/2724:2732 | homologous HL_5TBW_058 | NA HL_14725.1* | ||
1/5/2744:2749 | GNRA homologous HL_5TBW_059 | NA HL_43074.18* | ||
1/5/2776:2784 | homologous HL_5TBW_060 | NA HL_46142.8* | ||
1/5/2840:2848 | homologous HL_5TBW_061 | NA HL_36421.5* | ||
1/5/2897:2904 | homologous HL_5TBW_062 | NA HL_92681.5* | ||
1/5/2920:2926 | geometric HL_5TBW_063 | NA HL_26055.6* | ||
1/5/2963:2968 | GNRA homologous HL_5TBW_064 | NA HL_43074.18* | ||
1/5/3025:3030 | GNRA geometric HL_4V9F_023 | NA HL_43074.18* | ||
1/5/3068:3073 | Ribsomal LSU H95 homologous HL_5TBW_066 | NA HL_67719.1* | ||
1/5/3110:3124 | homologous HL_5TBW_067 | NA HL_56677.5* | ||
1/5/3193:3199 | Other HL geometric HL_5J7L_200 | NA HL_96776.3* | ||
1/5/3240:3247 | homologous HL_5TBW_069 | NA HL_27757.1* | ||
1/5/3303:3311 | geometric HL_5TBW_070 | NA HL_05018.6* | ||
1/5/3350:3353 | geometric HL_4V88_192 | NA HL_69353.7* | ||
1/6/7:17 | homologous HL_4V88_186 | NA HL_67265.4* | ||
1/6/154:160 | Other HL homologous HL_4V88_188 | NA HL_43074.18* | ||
1/6/190:195 | homologous HL_4V88_189 | NA HL_39228.1* | ||
1/6/230:235 | homologous HL_4V88_190 | NA HL_37407.2* | ||
1/6/243:250 | T-loop with 1 bulged base homologous HL_4V88_191 | NA HL_68493.6* | ||
1/6/276:279 | homologous HL_4V88_192 | NA HL_69353.7* | ||
1/6/330:338 | homologous HL_4V88_193 | NA HL_93727.5* | ||
1/6/368:373 | homologous HL_4V88_194 | NA HL_18785.1* | ||
1/6/393:404 | homologous HL_4V88_195 | NA HL_22443.1* | ||
1/6/414:419 | UNCG homologous HL_4V88_196 | NA HL_79299.11* | ||
1/6/450:456 | homologous HL_4V88_197 | NA HL_50374.1* | ||
1/6/520:532 | homologous HL_4V88_199 | NA HL_17086.2* | ||
1/6/569:574 | Other HL homologous HL_4V88_200 | NA HL_43074.18* | ||
1/6/764:772 | homologous HL_4V88_203 | NA HL_72066.1* | ||
1/6/777:783 | homologous HL_4V88_204 | NA HL_83225.1* | ||
1/6/829:843 | homologous HL_4V88_205 | NA HL_03603.1* | ||
1/6/900:909 | homologous HL_4V88_206 | NA HL_87219.4* | ||
1/6/937:942 | Other HL homologous HL_4V88_207 | NA HL_43074.18* | ||
1/6/997:1007 | homologous HL_4V88_208 | NA HL_87219.4* | ||
1/6/1055:1064 | homologous HL_4V88_209 | NA HL_32255.1* | ||
1/6/1084:1089 | Other HL homologous HL_4V88_210 | NA HL_43074.18* | ||
1/6/1121:1126 | GNRA homologous HL_4V88_211 | NA HL_43074.18* | ||
1/6/1188:1197 | homologous HL_4V88_212 | NA HL_96854.1* | ||
1/6/1238:1247 | homologous HL_4V88_213 | NA HL_30819.1* | ||
1/6/1296:1301 | GNRA homologous HL_4V88_214 | NA HL_43074.18* | ||
1/6/1309:1316 | homologous HL_4V88_215 | NA HL_54035.7* | ||
1/6/1359:1364 | homologous HL_4V88_216 | NA HL_82678.2* | ||
1/6/1396:1402 | homologous HL_4V88_217 | NA HL_67216.5* | ||
1/6/1501:1506 | GNRA homologous HL_4V88_218 | NA HL_43074.18* | ||
1/6/1550:1561 | homologous HL_4V88_219 | NA HL_32458.3* | ||
1/6/1594:1602 | homologous HL_4V88_220 | NA HL_01181.4* | ||
1/6/1778:1783 | Other HL homologous HL_4V88_222 | NA HL_43074.18* | ||
1/7/36:41 | NA | NA | ||
1/7/88:93 | NA | NA | ||
1/8/69:89 | NA | NA | ||
1/8/108:114 | homologous HL_5TBW_075 | NA HL_06569.2* | ||
1/8/124:129 | homologous HL_5TBW_076 | NA HL_60357.1* |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_5I4L_009 | homologous HL_5TBW_009 | ||
HL_5I4L_018 | homologous HL_5TBW_018 | ||
HL_5I4L_019 | GNRA homologous HL_5TBW_019 | ||
HL_5I4L_020 | homologous HL_5TBW_020 | ||
HL_5I4L_021 | homologous HL_5TBW_021 | ||
HL_5I4L_023 | GNRA homologous HL_5TBW_023 | ||
HL_5I4L_024 | geometric HL_5TBW_024 | ||
HL_5I4L_027 | homologous HL_5TBW_027 | ||
HL_5I4L_028 | homologous HL_5TBW_028 | ||
HL_5I4L_029 | homologous HL_5TBW_029 | ||
HL_5I4L_031 | T-loop with 2 stacked bulged bases homologous HL_5TBW_031 | ||
HL_5I4L_032 | homologous HL_5TBW_032 | ||
HL_5I4L_033 | Other HL homologous HL_5TBW_033 | ||
HL_5I4L_034 | homologous HL_5TBW_034 | ||
HL_5I4L_035 | homologous HL_5TBW_035 | ||
HL_5I4L_036 | GNRA homologous HL_5TBW_036 | ||
HL_5I4L_037 | homologous HL_5TBW_037 | ||
HL_5I4L_038 | homologous HL_5TBW_038 | ||
HL_5I4L_039 | homologous HL_5TBW_151 | ||
HL_5I4L_040 | homologous HL_5TBW_040 | ||
HL_5I4L_041 | homologous HL_5TBW_041 | ||
HL_5I4L_042 | GNRA with one bulged base homologous HL_5TBW_042 | ||
HL_5I4L_043 | UNCG geometric HL_5TBW_043 | ||
HL_5I4L_044 | geometric HL_5TBW_044 | ||
HL_5I4L_045 | homologous HL_5TBW_045 | ||
HL_5I4L_046 | homologous HL_5TBW_046 | ||
HL_5I4L_047 | GNRA homologous HL_5TBW_047 | ||
HL_5I4L_048 | Other HL homologous HL_5TBW_048 | ||
HL_5I4L_049 | homologous HL_5TBW_049 | ||
HL_5I4L_050 | homologous HL_5TBW_050 | ||
HL_5I4L_051 | homologous HL_5TBW_051 | ||
HL_5I4L_052 | homologous HL_5TBW_052 | ||
HL_5I4L_053 | NA | ||
HL_5I4L_054 | homologous HL_5TBW_053 | ||
HL_5I4L_055 | homologous HL_5TBW_054 | ||
HL_5I4L_056 | homologous HL_5TBW_055 | ||
HL_5I4L_057 | homologous HL_5TBW_056 | ||
HL_5I4L_058 | homologous HL_5TBW_057 | ||
HL_5I4L_059 | homologous HL_5TBW_058 | ||
HL_5I4L_060 | GNRA homologous HL_5TBW_059 | ||
HL_5I4L_061 | homologous HL_5TBW_060 | ||
HL_5I4L_065 | GNRA homologous HL_5TBW_064 | ||
HL_5I4L_073 | homologous HL_4V88_186 | ||
HL_5I4L_076 | homologous HL_4V88_189 | ||
HL_5I4L_077 | NA | ||
HL_5I4L_085 | NA | ||
HL_5I4L_087 | Other HL homologous HL_4V88_200 | ||
HL_5I4L_088 | NA | ||
HL_5I4L_089 | homologous HL_4V88_203 | ||
HL_5I4L_090 | homologous HL_4V88_204 | ||
HL_5I4L_091 | homologous HL_4V88_205 | ||
HL_5I4L_092 | homologous HL_4V88_206 | ||
HL_5I4L_094 | homologous HL_4V88_208 | ||
HL_5I4L_097 | GNRA homologous HL_4V88_211 | ||
HL_5I4L_098 | homologous HL_4V88_212 | ||
HL_5I4L_099 | homologous HL_4V88_213 | ||
HL_5I4L_100 | GNRA homologous HL_4V88_214 | ||
HL_5I4L_101 | homologous HL_4V88_215 | ||
HL_5I4L_102 | homologous HL_4V88_216 | ||
HL_5I4L_103 | homologous HL_4V88_217 | ||
HL_5I4L_104 | GNRA homologous HL_4V88_218 | ||
HL_5I4L_105 | homologous HL_4V88_219 | ||
HL_5I4L_107 | NA | ||
HL_5I4L_108 | Other HL homologous HL_4V88_222 | ||
HL_5I4L_111 | NA | ||
HL_5I4L_136 | NA | ||
HL_5I4L_140 | NA | ||
HL_5I4L_141 | geometric HL_1MMS_002 | ||
HL_5I4L_142 | NA | ||
HL_5I4L_147 | NA | ||
HL_5I4L_152 | Other HL homologous HL_5TBW_039 | ||
HL_5I4L_157 | NA | ||
HL_5I4L_165 | NA | ||
HL_5I4L_187 | homologous HL_4V88_187 | ||
HL_5I4L_198 | NA | ||
HL_5I4L_201 | NA | ||
HL_5I4L_202 | NA | ||
HL_5I4L_221 | NA |
Valid loops
# | loop id | location | annotation (mapped to, source) | motif group (similar to) |
---|---|---|---|---|
1/1/3:4, 1/4/155:156 | NA | NA | ||
1/1/7:8, 1/4/150:152 | Single bulged C homologous IL_5TBW_002 | NA IL_61258.10* | ||
1/1/13:15, 1/4/144:145 | Single bulged U homologous IL_5TBW_003 | NA IL_83039.11* | ||
1/1/27:28, 1/1/56:58 | Single stack bend homologous IL_5TBW_004 | NA IL_04038.4* | ||
1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS geometric IL_5TBW_005 | NA IL_22863.1* | ||
1/1/82:89, 1/1/97:103 | homologous IL_5TBW_006 | NA IL_29509.1* | ||
1/1/123:124, 1/1/144:149 | homologous IL_5TBW_007 | NA IL_19724.1* | ||
1/1/125:127, 1/1/141:143 | homologous IL_5TBW_008 | NA IL_01312.13* | ||
1/1/163:165, 1/1/257:258 | Single stack bend homologous IL_5TBW_009 | NA IL_04038.4* | ||
1/1/169:170, 1/1/248:253 | homologous IL_5TBW_010 | NA IL_76195.1* | ||
1/1/177:179, 1/1/237:241 | Major groove platform with extra pair homologous IL_5TBW_011 | NA IL_87630.5* | ||
1/1/189:191, 1/1/204:205 | Single bulged U homologous IL_5TBW_012 | NA IL_83039.11* | ||
1/1/337:339, 1/4/25:26 | Single bulged A homologous IL_5TBW_013 | NA IL_80007.16* | ||
1/1/376:379, 1/1/390:403 | geometric IL_5TBW_014 | NA IL_60992.5* | ||
1/1/404:410, 1/4/13:19 | Triple sheared with non-canonical cWW geometric IL_5TBW_015 | NA IL_66414.5* | ||
1/1/429:431, 1/1/628:630 | homologous IL_5TBW_016 | NA IL_01312.13* | ||
1/1/512:513, 1/1/577:579 | Single bulged A homologous IL_5TBW_018 | NA IL_40508.4* | ||
1/1/517:525, 1/1/567:573 | homologous IL_5TBW_019 | NA IL_41593.1* | ||
1/1/531:538, 1/1/553:561 | homologous IL_5TBW_020 | NA IL_94501.1* | ||
1/1/668:670, 1/1/792:794 | homologous IL_5TBW_021 | NA IL_01312.13* | ||
1/1/680:684, 1/1/696:700 | homologous IL_5TBW_022 | NA IL_92343.1* | ||
1/1/725:728, 1/1/741:745 | UAA/GAN homologous IL_5TBW_023 | NA IL_53523.5* | ||
1/1/752:753, 1/1/779:781 | Single bulged A homologous IL_5TBW_024 | NA IL_80007.16* | ||
1/1/755:756, 1/1/775:777 | Single bulged U homologous IL_5TBW_025 | NA IL_83039.11* | ||
1/1/803:805, 1/1/938:940 | homologous IL_5TBW_027 | NA IL_01312.13* | ||
1/1/805:809, 1/1/931:938 | geometric IL_5TBW_028 | NA IL_17470.5* | ||
1/1/954:956, 1/1/965:967 | homologous IL_5TBW_034 | NA IL_01312.13* | ||
1/1/969:970, 1/1/1111:1113 | Single stack bend homologous IL_5TBW_035 | NA IL_04038.4* | ||
1/1/977:981, 1/1/1102:1104 | homologous IL_5TBW_036 | NA IL_67474.3* | ||
1/1/983:985, 1/1/1099:1100 | Single bulged G homologous IL_5TBW_037 | NA IL_59137.10* | ||
1/1/1120:1122, 1/1/1136:1138 | homologous IL_5TBW_046 | NA IL_01312.13* | ||
1/1/1123:1125, 1/1/1133:1135 | Isolated cWS basepair homologous IL_5TBW_047 | NA IL_67621.5* | ||
1/1/1167:1171, 1/1/1328:1332 | UAA/GAN homologous IL_5TBW_048 | NA IL_53523.5* | ||
1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot homologous IL_5TBW_049 | NA IL_15861.6* | ||
1/1/1180:1182, 1/1/1324:1325 | Single bulged U geometric IL_5TBW_050 | NA IL_83039.11* | ||
1/1/1187:1194, 1/1/1314:1319 | geometric IL_5TBW_051 | NA IL_17971.1* | ||
1/1/1194:1205, 1/1/1299:1314 | homologous IL_5TBW_052 | NA IL_94878.1* | ||
1/1/1207:1209, 1/1/1296:1297 | Single bulged U homologous IL_5TBW_053 | NA IL_83039.11* | ||
1/1/1218:1226, 1/1/1283:1287 | Kink-turn homologous IL_5TBW_054 | NA IL_90538.3* | ||
1/1/1376:1378, 1/1/1428:1431 | Isolated cWS basepair homologous IL_5TBW_057 | NA IL_01312.13* | ||
1/1/1385:1387, 1/1/1420:1421 | Single bulged A homologous IL_5TBW_058 | NA IL_80007.16* | ||
1/1/1388:1395, 1/1/1415:1419 | Kink-turn homologous IL_5TBW_059 | NA IL_29549.9* | ||
1/1/1398:1400, 1/1/1411:1412 | Single bulged A homologous IL_5TBW_060 | NA IL_80007.16* | ||
1/1/1444:1450, 1/1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge homologous IL_5TBW_061 | NA IL_35110.5* | ||
1/1/2391:2394, 1/1/2986:2988 | Major groove platform with extra pair homologous IL_5TBW_091 | NA IL_87630.5* | ||
1/1/2824:2826, 1/1/2863:2865 | geometric IL_5TBW_103 | NA IL_05265.1* | ||
1/1/2826:2828, 1/1/2862:2863 | Major groove platform geometric IL_5TBW_104 | NA IL_80663.10* | ||
1/1/2828:2830, 1/1/2858:2862 | geometric IL_5TBW_105 | NA IL_07931.5* | ||
1/1/2835:2839, 1/1/2849:2853 | Triple sheared homologous IL_5TBW_106 | NA IL_56467.6* | ||
1/1/2876:2877, 1/1/2949:2951 | Major groove platform homologous IL_5TBW_107 | NA IL_80663.10* | ||
1/1/2879:2881, 1/1/2943:2947 | Isolated non-canonical cWW with bulges homologous IL_5TBW_108 | NA IL_01312.13* | ||
1/1/2881:2882, 1/1/2940:2943 | Multiple bulged bases geometric IL_5TBW_109 | NA IL_13730.12* | ||
1/1/2889:2891, 1/1/2912:2914 | geometric IL_5TBW_110 | NA IL_01312.13* | ||
1/1/2891:2892, 1/1/2909:2912 | Minor groove platform with intercalation homologous IL_5TBW_111 | NA IL_95601.1* | ||
1/1/2918:2920, 1/1/2926:2928 | homologous IL_5TBW_112 | NA IL_01312.13* | ||
1/1/3004:3007, 1/1/3139:3144 | Double sheared homologous IL_5TBW_114 | NA IL_09705.7* | ||
1/1/3012:3014, 1/1/3040:3042 | homologous IL_5TBW_115 | NA IL_01312.13* | ||
1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge geometric IL_5TBW_116 | NA IL_04346.5* | ||
1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH homologous IL_5TBW_117 | NA IL_28060.3* | ||
1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related homologous IL_5TBW_118 | NA IL_53523.5* | ||
1/1/3063:3064, 1/1/3077:3080 | Multiple bulged bases homologous IL_5TBW_119 | NA IL_13730.12* | ||
1/1/3103:3107, 1/1/3127:3131 | UAA/GAN homologous IL_5TBW_120 | NA IL_53523.5* | ||
1/1/3162:3166, 1/1/3284:3288 | homologous IL_5TBW_121 | NA IL_05867.1* | ||
1/1/3177:3179, 1/1/3210:3211 | Single bulged A homologous IL_5TBW_123 | NA IL_80007.16* | ||
1/1/3179:3188, 1/1/3204:3210 | geometric IL_5TBW_124 | NA IL_56867.1* | ||
1/1/3193:3194, 1/1/3197:3199 | Single bulged U geometric IL_5TBW_125 | NA IL_83039.11* | ||
1/1/3225:3229, 1/1/3258:3260 | homologous IL_5TBW_126 | NA IL_50789.1* | ||
1/1/3233:3235, 1/1/3252:3254 | homologous IL_5TBW_127 | NA IL_01312.13* | ||
1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs geometric IL_5TBW_128 | NA IL_85877.10* | ||
1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs homologous IL_5TBW_129 | NA IL_85877.10* | ||
1/1/3318:3320, 1/1/3387:3388 | Single bulged U homologous IL_5TBW_130 | NA IL_83039.11* | ||
1/1/3324:3325, 1/1/3381:3383 | Single bulged U homologous IL_5TBW_131 | NA IL_21340.1* | ||
1/1/3328:3330, 1/1/3373:3378 | Isolated non-canonical cWW with bulges homologous IL_5TBW_132 | NA IL_55456.1* | ||
1/1/3332:3337, 1/1/3367:3371 | homologous IL_5TBW_133 | NA IL_47002.1* | ||
1/1/3340:3342, 1/1/3363:3364 | Single bulged U homologous IL_5TBW_134 | NA IL_83039.11* | ||
1/1/3342:3345, 1/1/3360:3363 | tWS-tSW geometric IL_5TBW_135 | NA IL_09705.7* | ||
1/1/3349:3350, 1/1/3353:3356 | Multiple bulged bases geometric IL_5TBW_136 | NA IL_13730.12* | ||
1/2/24:26, 1/2/600:601 | Single bulged C homologous IL_4V88_384 | NA IL_61258.10* | ||
1/2/35:37, 1/2/471:473 | UC cWW geometric IL_4V88_385 | NA IL_01312.13* | ||
1/2/37:41, 1/2/466:471 | geometric IL_4V88_386 | NA IL_53318.1* | ||
1/2/42:48, 1/2/431:433 | geometric IL_4V88_387 | NA IL_34626.4* | ||
1/2/50:52, 1/2/428:429 | Minor groove platform homologous IL_4V88_388 | NA IL_06437.11* | ||
1/2/58:63, 1/2/87:89 | homologous IL_4V88_389 | NA IL_96451.1* | ||
1/2/64:69, 1/2/82:86 | homologous IL_4V88_390 | NA IL_59423.1* | ||
1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs homologous IL_4V88_391 | NA IL_85877.10* | ||
1/2/113:116, 1/2/300:301 | Multiple bulged bases homologous IL_4V88_392 | NA IL_13730.12* | ||
1/2/117:122, 1/2/295:299 | homologous IL_4V88_393 | NA IL_76386.1* | ||
1/2/143:149, 1/2/165:172 | tWH-tWH-tHW-tHW homologous IL_4V88_394 | NA IL_92440.5* | ||
1/2/150:152, 1/2/162:164 | Isolated cWH basepair geometric IL_6RA4_002 | NA IL_42589.6* | ||
1/2/186:189, 1/2/196:199 | Double sheared homologous IL_4V88_396 | NA IL_09705.7* | ||
1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW geometric IL_4V88_397 | NA IL_95485.6* | ||
1/2/206:208, 1/2/257:259 | homologous IL_4V88_398 | NA IL_01312.13* | ||
1/2/265:267, 1/2/288:289 | Single bulged A homologous IL_4V88_399 | NA IL_80007.16* | ||
1/2/270:273, 1/2/283:285 | homologous IL_4V88_400 | NA IL_05922.1* | ||
1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking homologous IL_4V88_402 | NA IL_29549.9* | ||
1/2/318:323, 1/2/345:346 | homologous IL_4V88_403 | NA IL_55658.1* | ||
1/2/389:391, 1/2/406:408 | Isolated cWH basepair homologous IL_4V88_405 | NA IL_42589.6* | ||
1/2/411:413, 1/2/420:422 | Isolated near basepair homologous IL_4V88_406 | NA IL_01312.13* | ||
1/2/439:441, 1/2/463:464 | Single bulged U geometric IL_4V88_407 | NA IL_83039.11* | ||
1/2/443:448, 1/2/458:461 | C-loop with extra cWW pair homologous IL_4V88_408 | NA IL_51590.1* | ||
1/2/517:520, 1/2/532:535 | Double sheared geometric IL_4LFB_060 | NA IL_09705.7* | ||
1/2/616:622, 1/2/1104:1105 | homologous IL_4V88_416 | NA IL_12418.1* | ||
1/2/624:626, 1/2/973:975 | homologous IL_4V88_417 | NA IL_01312.13* | ||
1/2/627:631, 1/2/968:972 | tSH-tHW-tHS homologous IL_4V88_418 | NA IL_39521.5* | ||
1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW geometric IL_4V88_428 | NA IL_70995.6* | ||
1/2/868:870, 1/2/957:960 | Single bulged G, near cWW geometric IL_6CZR_128 | NA IL_01312.13* | ||
1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs homologous IL_4V88_430 | NA IL_85877.10* | ||
1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs geometric IL_4V88_431 | NA IL_85877.10* | ||
1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs homologous IL_4V88_432 | NA IL_85877.10* | ||
1/2/1034:1036, 1/2/1095:1101 | homologous IL_4V88_437 | NA IL_19557.1* | ||
1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs homologous |