5I4L | Motifs

227 Hairpin loops
462 Internal loops
58 Junction loops

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	HL_5I4L_001	1/1/38:45	homologous HL_5TBW_001	NA HL_23481.5*
2	HL_5I4L_002	1/1/69:74	homologous HL_5TBW_002	NA HL_96776.3*
3	HL_5I4L_003	1/1/90:96	homologous HL_5TBW_003	NA HL_67216.5*
4	HL_5I4L_004	1/1/132:136	homologous HL_5TBW_004	NA HL_36982.3*
5	HL_5I4L_005	1/1/194:201	T-loop with 1 bulged base homologous HL_5TBW_005	NA HL_68493.6*
6	HL_5I4L_006	1/1/208:212	homologous HL_5TBW_006	NA HL_98557.5*
7	HL_5I4L_007	1/1/216:224	homologous HL_5TBW_007	NA HL_08002.6*
8	HL_5I4L_008	1/1/278:287	homologous HL_5TBW_008	NA HL_54035.7*
9	HL_5I4L_010	1/1/357:362	Other HL homologous HL_5TBW_010	NA HL_43074.18*
10	HL_5I4L_011	1/1/382:387	GNRA homologous HL_5TBW_011	NA HL_43074.18*
11	HL_5I4L_012	1/1/541:550	homologous HL_5TBW_124	NA
12	HL_5I4L_013	1/1/599:604	GNRA homologous HL_5TBW_013	NA HL_43074.18*
13	HL_5I4L_014	1/1/640:649	T-loop with 2 stacked bulged bases homologous HL_5TBW_014	NA HL_33239.17*
14	HL_5I4L_015	1/1/686:694	homologous HL_5TBW_015	NA HL_80105.3*
15	HL_5I4L_016	1/1/707:712	GNRA homologous HL_5TBW_016	NA HL_43074.18*
16	HL_5I4L_017	1/1/732:737	GNRA homologous HL_5TBW_017	NA HL_43074.18*
17	HL_5I4L_022	1/1/958:963	homologous HL_5TBW_022	NA HL_15942.5*
18	HL_5I4L_025	1/1/1126:1132	GNRA homologous HL_5TBW_025	NA HL_43074.18*
19	HL_5I4L_026	1/1/1148:1155	homologous HL_5TBW_026	NA HL_72451.5*
20	HL_5I4L_030	1/1/1403:1408	GNRA homologous HL_5TBW_030	NA HL_43074.18*
21	HL_5I4L_062	1/1/2840:2848	homologous HL_5TBW_061	NA HL_36421.5*
22	HL_5I4L_063	1/1/2897:2904	homologous HL_5TBW_062	NA HL_92681.5*
23	HL_5I4L_064	1/1/2920:2926	geometric HL_5TBW_063	NA HL_26055.6*
24	HL_5I4L_066	1/1/3025:3030	GNRA homologous HL_5TBW_065	NA HL_43074.18*
25	HL_5I4L_067	1/1/3068:3073	Ribsomal LSU H95 homologous HL_5TBW_066	NA HL_67719.1*
26	HL_5I4L_068	1/1/3110:3124	homologous HL_5TBW_067	NA HL_56677.5*
27	HL_5I4L_069	1/1/3194:3197	homologous HL_5TBW_068	NA HL_46546.1*
28	HL_5I4L_070	1/1/3240:3247	homologous HL_5TBW_069	NA HL_27757.1*
29	HL_5I4L_071	1/1/3303:3311	geometric HL_5TBW_070	NA HL_05018.6*
30	HL_5I4L_072	1/1/3350:3353	homologous HL_5TBW_071	NA HL_69353.7*
31	HL_5I4L_074	1/2/70:81	homologous HL_4V88_187	NA HL_07268.1*
32	HL_5I4L_075	1/2/154:160	Other HL homologous HL_4V88_188	NA HL_43074.18*
33	HL_5I4L_078	1/2/243:250	T-loop with 1 bulged base homologous HL_4V88_191	NA HL_68493.6*
34	HL_5I4L_079	1/2/275:281	Single bulged U homologous IL_4V88_401	NA IL_83039.11*
35	HL_5I4L_080	1/2/330:338	homologous HL_4V88_193	NA HL_93727.5*
36	HL_5I4L_081	1/2/368:373	homologous HL_4V88_194	NA HL_18785.1*
37	HL_5I4L_082	1/2/393:404	homologous HL_4V88_195	NA HL_22443.1*
38	HL_5I4L_083	1/2/414:419	UNCG homologous HL_4V88_196	NA HL_79299.11*
39	HL_5I4L_084	1/2/450:456	homologous HL_4V88_197	NA HL_50374.1*
40	HL_5I4L_086	1/2/520:532	geometric HL_4V88_199	NA HL_17086.2*
41	HL_5I4L_093	1/2/937:942	Other HL homologous HL_4V88_207	NA HL_43074.18*
42	HL_5I4L_095	1/2/1055:1064	geometric HL_2ZZM_002	NA HL_18218.2*
43	HL_5I4L_096	1/2/1084:1089	Other HL homologous HL_4V88_210	NA HL_43074.18*
44	HL_5I4L_106	1/2/1594:1602	homologous HL_4V88_220	NA HL_01181.4*
45	HL_5I4L_109	1/3/36:41	NA	NA
46	HL_5I4L_110	1/3/88:93	NA	NA
47	HL_5I4L_112	1/4/108:114	homologous HL_5TBW_075	NA HL_06569.2*
48	HL_5I4L_113	1/4/124:129	homologous HL_5TBW_076	NA HL_60357.1*
49	HL_5I4L_114	1/5/38:45	geometric HL_5TBW_001	NA HL_23481.5*
50	HL_5I4L_115	1/5/69:74	homologous HL_5TBW_002	NA HL_96776.3*
51	HL_5I4L_116	1/5/90:96	homologous HL_5TBW_003	NA HL_67216.5*
52	HL_5I4L_117	1/5/132:136	homologous HL_5TBW_004	NA HL_36982.3*
53	HL_5I4L_118	1/5/194:201	T-loop with 1 bulged base homologous HL_5TBW_005	NA HL_68493.6*
54	HL_5I4L_119	1/5/208:212	homologous HL_5TBW_006	NA HL_98557.5*
55	HL_5I4L_120	1/5/216:224	homologous HL_5TBW_007	NA HL_08002.6*
56	HL_5I4L_121	1/5/278:287	homologous HL_5TBW_008	NA HL_54035.7*
57	HL_5I4L_122	1/5/303:312	homologous HL_5TBW_009	NA HL_46142.8*
58	HL_5I4L_123	1/5/357:362	Other HL homologous HL_5TBW_010	NA HL_43074.18*
59	HL_5I4L_124	1/5/382:387	GNRA homologous HL_5TBW_011	NA HL_43074.18*
60	HL_5I4L_125	1/5/543:548	geometric HL_6JQ6_004	NA HL_79299.11*
61	HL_5I4L_126	1/5/599:604	GNRA homologous HL_5TBW_013	NA HL_43074.18*
62	HL_5I4L_127	1/5/640:649	T-loop with 2 stacked bulged bases homologous HL_5TBW_014	NA HL_33239.17*
63	HL_5I4L_128	1/5/686:694	homologous HL_5TBW_015	NA HL_80105.3*
64	HL_5I4L_129	1/5/707:712	GNRA homologous HL_5TBW_016	NA HL_43074.18*
65	HL_5I4L_130	1/5/732:737	GNRA homologous HL_5TBW_017	NA HL_43074.18*
66	HL_5I4L_131	1/5/763:768	homologous HL_5TBW_018	NA HL_00996.1*
67	HL_5I4L_132	1/5/844:849	GNRA homologous HL_5TBW_019	NA HL_43074.18*
68	HL_5I4L_133	1/5/876:885	homologous HL_5TBW_020	NA HL_39334.5*
69	HL_5I4L_134	1/5/910:918	homologous HL_5TBW_021	NA HL_05832.1*
70	HL_5I4L_135	1/5/958:963	homologous HL_5TBW_022	NA HL_15942.5*
71	HL_5I4L_137	1/5/1076:1083	homologous HL_5TBW_024	NA HL_54035.7*
72	HL_5I4L_138	1/5/1126:1132	GNRA homologous HL_5TBW_025	NA HL_43074.18*
73	HL_5I4L_139	1/5/1148:1155	homologous HL_5TBW_026	NA HL_72451.5*
74	HL_5I4L_143	1/5/1403:1408	GNRA homologous HL_5TBW_030	NA HL_43074.18*
75	HL_5I4L_144	1/5/1462:1470	T-loop with 2 stacked bulged bases homologous HL_5TBW_031	NA HL_33239.17*
76	HL_5I4L_145	1/5/1506:1512	homologous HL_5TBW_032	NA HL_86880.5*
77	HL_5I4L_146	1/5/1544:1549	Other HL homologous HL_5TBW_033	NA HL_43074.18*
78	HL_5I4L_148	1/5/1599:1608	homologous HL_5TBW_035	NA HL_78457.4*
79	HL_5I4L_149	1/5/1634:1639	GNRA homologous HL_5TBW_036	NA HL_43074.18*
80	HL_5I4L_150	1/5/1680:1688	homologous HL_5TBW_037	NA HL_73793.2*
81	HL_5I4L_151	1/5/1719:1725	homologous HL_5TBW_038	NA HL_00923.1*
82	HL_5I4L_153	1/5/1792:1796	homologous HL_5TBW_040	NA HL_69353.7*
83	HL_5I4L_154	1/5/1844:1851	homologous HL_5TBW_041	NA HL_66171.3*
84	HL_5I4L_155	1/5/1862:1868	GNRA with one bulged base homologous HL_5TBW_042	NA HL_02361.6*
85	HL_5I4L_156	1/5/1923:1928	UNCG geometric HL_4V9F_044	NA HL_79299.11*
86	HL_5I4L_158	1/5/2110:2114	homologous HL_5TBW_045	NA HL_99223.1*
87	HL_5I4L_159	1/5/2135:2145	homologous HL_5TBW_046	NA HL_43613.4*
88	HL_5I4L_160	1/5/2164:2170	GNRA homologous HL_5TBW_047	NA HL_43074.18*
89	HL_5I4L_161	1/5/2220:2225	Other HL homologous HL_5TBW_048	NA HL_43074.18*
90	HL_5I4L_162	1/5/2253:2263	homologous HL_5TBW_049	NA HL_98248.1*
91	HL_5I4L_163	1/5/2292:2300	homologous HL_5TBW_050	NA HL_53760.4*
92	HL_5I4L_164	1/5/2369:2378	homologous HL_5TBW_051	NA HL_90642.5*
93	HL_5I4L_166	1/5/2534:2545	NA	NA
94	HL_5I4L_167	1/5/2568:2573	NA	NA
95	HL_5I4L_168	1/5/2616:2624	homologous HL_5TBW_054	NA HL_46891.3*
96	HL_5I4L_169	1/5/2633:2645	homologous HL_5TBW_055	NA HL_19870.5*
97	HL_5I4L_170	1/5/2673:2681	homologous HL_5TBW_056	NA HL_76406.3*
98	HL_5I4L_171	1/5/2693:2700	homologous HL_5TBW_057	NA HL_46142.8*
99	HL_5I4L_172	1/5/2724:2732	homologous HL_5TBW_058	NA HL_14725.1*
100	HL_5I4L_173	1/5/2744:2749	GNRA homologous HL_5TBW_059	NA HL_43074.18*
101	HL_5I4L_174	1/5/2776:2784	homologous HL_5TBW_060	NA HL_46142.8*
102	HL_5I4L_175	1/5/2840:2848	homologous HL_5TBW_061	NA HL_36421.5*
103	HL_5I4L_176	1/5/2897:2904	homologous HL_5TBW_062	NA HL_92681.5*
104	HL_5I4L_177	1/5/2920:2926	geometric HL_5TBW_063	NA HL_26055.6*
105	HL_5I4L_178	1/5/2963:2968	GNRA homologous HL_5TBW_064	NA HL_43074.18*
106	HL_5I4L_179	1/5/3025:3030	GNRA geometric HL_4V9F_023	NA HL_43074.18*
107	HL_5I4L_180	1/5/3068:3073	Ribsomal LSU H95 homologous HL_5TBW_066	NA HL_67719.1*
108	HL_5I4L_181	1/5/3110:3124	homologous HL_5TBW_067	NA HL_56677.5*
109	HL_5I4L_182	1/5/3193:3199	Other HL geometric HL_5J7L_200	NA HL_96776.3*
110	HL_5I4L_183	1/5/3240:3247	homologous HL_5TBW_069	NA HL_27757.1*
111	HL_5I4L_184	1/5/3303:3311	geometric HL_5TBW_070	NA HL_05018.6*
112	HL_5I4L_185	1/5/3350:3353	geometric HL_4V88_192	NA HL_69353.7*
113	HL_5I4L_186	1/6/7:17	homologous HL_4V88_186	NA HL_67265.4*
114	HL_5I4L_188	1/6/154:160	Other HL homologous HL_4V88_188	NA HL_43074.18*
115	HL_5I4L_189	1/6/190:195	homologous HL_4V88_189	NA HL_39228.1*
116	HL_5I4L_190	1/6/230:235	homologous HL_4V88_190	NA HL_37407.2*
117	HL_5I4L_191	1/6/243:250	T-loop with 1 bulged base homologous HL_4V88_191	NA HL_68493.6*
118	HL_5I4L_192	1/6/276:279	homologous HL_4V88_192	NA HL_69353.7*
119	HL_5I4L_193	1/6/330:338	homologous HL_4V88_193	NA HL_93727.5*
120	HL_5I4L_194	1/6/368:373	homologous HL_4V88_194	NA HL_18785.1*
121	HL_5I4L_195	1/6/393:404	homologous HL_4V88_195	NA HL_22443.1*
122	HL_5I4L_196	1/6/414:419	UNCG homologous HL_4V88_196	NA HL_79299.11*
123	HL_5I4L_197	1/6/450:456	homologous HL_4V88_197	NA HL_50374.1*
124	HL_5I4L_199	1/6/520:532	homologous HL_4V88_199	NA HL_17086.2*
125	HL_5I4L_200	1/6/569:574	Other HL homologous HL_4V88_200	NA HL_43074.18*
126	HL_5I4L_203	1/6/764:772	homologous HL_4V88_203	NA HL_72066.1*
127	HL_5I4L_204	1/6/777:783	homologous HL_4V88_204	NA HL_83225.1*
128	HL_5I4L_205	1/6/829:843	homologous HL_4V88_205	NA HL_03603.1*
129	HL_5I4L_206	1/6/900:909	homologous HL_4V88_206	NA HL_87219.4*
130	HL_5I4L_207	1/6/937:942	Other HL homologous HL_4V88_207	NA HL_43074.18*
131	HL_5I4L_208	1/6/997:1007	homologous HL_4V88_208	NA HL_87219.4*
132	HL_5I4L_209	1/6/1055:1064	homologous HL_4V88_209	NA HL_32255.1*
133	HL_5I4L_210	1/6/1084:1089	Other HL homologous HL_4V88_210	NA HL_43074.18*
134	HL_5I4L_211	1/6/1121:1126	GNRA homologous HL_4V88_211	NA HL_43074.18*
135	HL_5I4L_212	1/6/1188:1197	homologous HL_4V88_212	NA HL_96854.1*
136	HL_5I4L_213	1/6/1238:1247	homologous HL_4V88_213	NA HL_30819.1*
137	HL_5I4L_214	1/6/1296:1301	GNRA homologous HL_4V88_214	NA HL_43074.18*
138	HL_5I4L_215	1/6/1309:1316	homologous HL_4V88_215	NA HL_54035.7*
139	HL_5I4L_216	1/6/1359:1364	homologous HL_4V88_216	NA HL_82678.2*
140	HL_5I4L_217	1/6/1396:1402	homologous HL_4V88_217	NA HL_67216.5*
141	HL_5I4L_218	1/6/1501:1506	GNRA homologous HL_4V88_218	NA HL_43074.18*
142	HL_5I4L_219	1/6/1550:1561	homologous HL_4V88_219	NA HL_32458.3*
143	HL_5I4L_220	1/6/1594:1602	homologous HL_4V88_220	NA HL_01181.4*
144	HL_5I4L_222	1/6/1778:1783	Other HL homologous HL_4V88_222	NA HL_43074.18*
145	HL_5I4L_223	1/7/36:41	NA	NA
146	HL_5I4L_224	1/7/88:93	NA	NA
147	HL_5I4L_225	1/8/69:89	NA	NA
148	HL_5I4L_226	1/8/108:114	homologous HL_5TBW_075	NA HL_06569.2*
149	HL_5I4L_227	1/8/124:129	homologous HL_5TBW_076	NA HL_60357.1*

Problematic loops

#	loop id	Problem	Sequence
1	HL_5I4L_009	missing nts	homologous HL_5TBW_009
2	HL_5I4L_018	missing nts	homologous HL_5TBW_018
3	HL_5I4L_019	missing nts	GNRA homologous HL_5TBW_019
4	HL_5I4L_020	missing nts	homologous HL_5TBW_020
5	HL_5I4L_021	missing nts	homologous HL_5TBW_021
6	HL_5I4L_023	missing nts	GNRA homologous HL_5TBW_023
7	HL_5I4L_024	missing nts	geometric HL_5TBW_024
8	HL_5I4L_027	missing nts	homologous HL_5TBW_027
9	HL_5I4L_028	missing nts	homologous HL_5TBW_028
10	HL_5I4L_029	missing nts	homologous HL_5TBW_029
11	HL_5I4L_031	missing nts	T-loop with 2 stacked bulged bases homologous HL_5TBW_031
12	HL_5I4L_032	missing nts	homologous HL_5TBW_032
13	HL_5I4L_033	missing nts	Other HL homologous HL_5TBW_033
14	HL_5I4L_034	missing nts	homologous HL_5TBW_034
15	HL_5I4L_035	missing nts	homologous HL_5TBW_035
16	HL_5I4L_036	missing nts	GNRA homologous HL_5TBW_036
17	HL_5I4L_037	missing nts	homologous HL_5TBW_037
18	HL_5I4L_038	missing nts	homologous HL_5TBW_038
19	HL_5I4L_039	missing nts	homologous HL_5TBW_151
20	HL_5I4L_040	missing nts	homologous HL_5TBW_040
21	HL_5I4L_041	missing nts	homologous HL_5TBW_041
22	HL_5I4L_042	missing nts	GNRA with one bulged base homologous HL_5TBW_042
23	HL_5I4L_043	missing nts	UNCG geometric HL_5TBW_043
24	HL_5I4L_044	missing nts	geometric HL_5TBW_044
25	HL_5I4L_045	missing nts	homologous HL_5TBW_045
26	HL_5I4L_046	missing nts	homologous HL_5TBW_046
27	HL_5I4L_047	missing nts	GNRA homologous HL_5TBW_047
28	HL_5I4L_048	missing nts	Other HL homologous HL_5TBW_048
29	HL_5I4L_049	missing nts	homologous HL_5TBW_049
30	HL_5I4L_050	missing nts	homologous HL_5TBW_050
31	HL_5I4L_051	missing nts	homologous HL_5TBW_051
32	HL_5I4L_052	missing nts	homologous HL_5TBW_052
33	HL_5I4L_053	missing nts	NA
34	HL_5I4L_054	missing nts	homologous HL_5TBW_053
35	HL_5I4L_055	missing nts	homologous HL_5TBW_054
36	HL_5I4L_056	missing nts	homologous HL_5TBW_055
37	HL_5I4L_057	missing nts	homologous HL_5TBW_056
38	HL_5I4L_058	missing nts	homologous HL_5TBW_057
39	HL_5I4L_059	missing nts	homologous HL_5TBW_058
40	HL_5I4L_060	missing nts	GNRA homologous HL_5TBW_059
41	HL_5I4L_061	missing nts	homologous HL_5TBW_060
42	HL_5I4L_065	missing nts	GNRA homologous HL_5TBW_064
43	HL_5I4L_073	missing nts	homologous HL_4V88_186
44	HL_5I4L_076	all high RSRZ	homologous HL_4V88_189
45	HL_5I4L_077	missing nts	NA
46	HL_5I4L_085	missing nts	NA
47	HL_5I4L_087	missing nts	Other HL homologous HL_4V88_200
48	HL_5I4L_088	missing nts	NA
49	HL_5I4L_089	missing nts	homologous HL_4V88_203
50	HL_5I4L_090	missing nts	homologous HL_4V88_204
51	HL_5I4L_091	missing nts	homologous HL_4V88_205
52	HL_5I4L_092	missing nts	homologous HL_4V88_206
53	HL_5I4L_094	missing nts	homologous HL_4V88_208
54	HL_5I4L_097	missing nts	GNRA homologous HL_4V88_211
55	HL_5I4L_098	missing nts	homologous HL_4V88_212
56	HL_5I4L_099	missing nts	homologous HL_4V88_213
57	HL_5I4L_100	missing nts	GNRA homologous HL_4V88_214
58	HL_5I4L_101	missing nts	homologous HL_4V88_215
59	HL_5I4L_102	missing nts	homologous HL_4V88_216
60	HL_5I4L_103	missing nts	homologous HL_4V88_217
61	HL_5I4L_104	missing nts	GNRA homologous HL_4V88_218
62	HL_5I4L_105	missing nts	homologous HL_4V88_219
63	HL_5I4L_107	missing nts	NA
64	HL_5I4L_108	missing nts	Other HL homologous HL_4V88_222
65	HL_5I4L_111	missing nts	NA
66	HL_5I4L_136	missing nts	NA
67	HL_5I4L_140	missing nts	NA
68	HL_5I4L_141	missing nts	geometric HL_1MMS_002
69	HL_5I4L_142	missing nts	NA
70	HL_5I4L_147	missing nts	NA
71	HL_5I4L_152	missing nts	Other HL homologous HL_5TBW_039
72	HL_5I4L_157	missing nts	NA
73	HL_5I4L_165	missing nts	NA
74	HL_5I4L_187	missing nts	homologous HL_4V88_187
75	HL_5I4L_198	missing nts	NA
76	HL_5I4L_201	missing nts	NA
77	HL_5I4L_202	missing nts	NA
78	HL_5I4L_221	missing nts	NA

Valid loops

#	loop id	location	annotation (mapped to, source)	motif group (similar to)
1	IL_5I4L_001	1/1/3:4, 1/4/155:156	NA	NA
2	IL_5I4L_002	1/1/7:8, 1/4/150:152	Single bulged C homologous IL_5TBW_002	NA IL_61258.10*
3	IL_5I4L_003	1/1/13:15, 1/4/144:145	Single bulged U homologous IL_5TBW_003	NA IL_83039.11*
4	IL_5I4L_004	1/1/27:28, 1/1/56:58	Single stack bend homologous IL_5TBW_004	NA IL_04038.4*
5	IL_5I4L_005	1/1/31:38, 1/1/45:53	tSH-tHW-tHH-tHS geometric IL_5TBW_005	NA IL_22863.1*
6	IL_5I4L_006	1/1/82:89, 1/1/97:103	homologous IL_5TBW_006	NA IL_29509.1*
7	IL_5I4L_007	1/1/123:124, 1/1/144:149	homologous IL_5TBW_007	NA IL_19724.1*
8	IL_5I4L_008	1/1/125:127, 1/1/141:143	homologous IL_5TBW_008	NA IL_01312.13*
9	IL_5I4L_009	1/1/163:165, 1/1/257:258	Single stack bend homologous IL_5TBW_009	NA IL_04038.4*
10	IL_5I4L_010	1/1/169:170, 1/1/248:253	homologous IL_5TBW_010	NA IL_76195.1*
11	IL_5I4L_011	1/1/177:179, 1/1/237:241	Major groove platform with extra pair homologous IL_5TBW_011	NA IL_87630.5*
12	IL_5I4L_012	1/1/189:191, 1/1/204:205	Single bulged U homologous IL_5TBW_012	NA IL_83039.11*
13	IL_5I4L_013	1/1/337:339, 1/4/25:26	Single bulged A homologous IL_5TBW_013	NA IL_80007.16*
14	IL_5I4L_014	1/1/376:379, 1/1/390:403	geometric IL_5TBW_014	NA IL_60992.5*
15	IL_5I4L_015	1/1/404:410, 1/4/13:19	Triple sheared with non-canonical cWW geometric IL_5TBW_015	NA IL_66414.5*
16	IL_5I4L_016	1/1/429:431, 1/1/628:630	homologous IL_5TBW_016	NA IL_01312.13*
17	IL_5I4L_018	1/1/512:513, 1/1/577:579	Single bulged A homologous IL_5TBW_018	NA IL_40508.4*
18	IL_5I4L_019	1/1/517:525, 1/1/567:573	homologous IL_5TBW_019	NA IL_41593.1*
19	IL_5I4L_020	1/1/531:538, 1/1/553:561	homologous IL_5TBW_020	NA IL_94501.1*
20	IL_5I4L_021	1/1/668:670, 1/1/792:794	homologous IL_5TBW_021	NA IL_01312.13*
21	IL_5I4L_022	1/1/680:684, 1/1/696:700	homologous IL_5TBW_022	NA IL_92343.1*
22	IL_5I4L_023	1/1/725:728, 1/1/741:745	UAA/GAN homologous IL_5TBW_023	NA IL_53523.5*
23	IL_5I4L_024	1/1/752:753, 1/1/779:781	Single bulged A homologous IL_5TBW_024	NA IL_80007.16*
24	IL_5I4L_025	1/1/755:756, 1/1/775:777	Single bulged U homologous IL_5TBW_025	NA IL_83039.11*
25	IL_5I4L_027	1/1/803:805, 1/1/938:940	homologous IL_5TBW_027	NA IL_01312.13*
26	IL_5I4L_028	1/1/805:809, 1/1/931:938	geometric IL_5TBW_028	NA IL_17470.5*
27	IL_5I4L_034	1/1/954:956, 1/1/965:967	homologous IL_5TBW_034	NA IL_01312.13*
28	IL_5I4L_035	1/1/969:970, 1/1/1111:1113	Single stack bend homologous IL_5TBW_035	NA IL_04038.4*
29	IL_5I4L_036	1/1/977:981, 1/1/1102:1104	homologous IL_5TBW_036	NA IL_67474.3*
30	IL_5I4L_037	1/1/983:985, 1/1/1099:1100	Single bulged G homologous IL_5TBW_037	NA IL_59137.10*
31	IL_5I4L_046	1/1/1120:1122, 1/1/1136:1138	homologous IL_5TBW_046	NA IL_01312.13*
32	IL_5I4L_047	1/1/1123:1125, 1/1/1133:1135	Isolated cWS basepair homologous IL_5TBW_047	NA IL_67621.5*
33	IL_5I4L_048	1/1/1167:1171, 1/1/1328:1332	UAA/GAN homologous IL_5TBW_048	NA IL_53523.5*
34	IL_5I4L_049	1/1/1173:1180, 1/1/1325:1326	SSU/LSU pseudoknot homologous IL_5TBW_049	NA IL_15861.6*
35	IL_5I4L_050	1/1/1180:1182, 1/1/1324:1325	Single bulged U geometric IL_5TBW_050	NA IL_83039.11*
36	IL_5I4L_051	1/1/1187:1194, 1/1/1314:1319	geometric IL_5TBW_051	NA IL_17971.1*
37	IL_5I4L_052	1/1/1194:1205, 1/1/1299:1314	homologous IL_5TBW_052	NA IL_94878.1*
38	IL_5I4L_053	1/1/1207:1209, 1/1/1296:1297	Single bulged U homologous IL_5TBW_053	NA IL_83039.11*
39	IL_5I4L_054	1/1/1218:1226, 1/1/1283:1287	Kink-turn homologous IL_5TBW_054	NA IL_90538.3*
40	IL_5I4L_057	1/1/1376:1378, 1/1/1428:1431	Isolated cWS basepair homologous IL_5TBW_057	NA IL_01312.13*
41	IL_5I4L_058	1/1/1385:1387, 1/1/1420:1421	Single bulged A homologous IL_5TBW_058	NA IL_80007.16*
42	IL_5I4L_059	1/1/1388:1395, 1/1/1415:1419	Kink-turn homologous IL_5TBW_059	NA IL_29549.9*
43	IL_5I4L_060	1/1/1398:1400, 1/1/1411:1412	Single bulged A homologous IL_5TBW_060	NA IL_80007.16*
44	IL_5I4L_061	1/1/1444:1450, 1/1/2354:2359	7x6 Sarcin-Ricin; G-bulge homologous IL_5TBW_061	NA IL_35110.5*
45	IL_5I4L_091	1/1/2391:2394, 1/1/2986:2988	Major groove platform with extra pair homologous IL_5TBW_091	NA IL_87630.5*
46	IL_5I4L_102	1/1/2824:2826, 1/1/2863:2865	geometric IL_5TBW_103	NA IL_05265.1*
47	IL_5I4L_103	1/1/2826:2828, 1/1/2862:2863	Major groove platform geometric IL_5TBW_104	NA IL_80663.10*
48	IL_5I4L_104	1/1/2828:2830, 1/1/2858:2862	geometric IL_5TBW_105	NA IL_07931.5*
49	IL_5I4L_105	1/1/2835:2839, 1/1/2849:2853	Triple sheared homologous IL_5TBW_106	NA IL_56467.6*
50	IL_5I4L_106	1/1/2876:2877, 1/1/2949:2951	Major groove platform homologous IL_5TBW_107	NA IL_80663.10*
51	IL_5I4L_107	1/1/2879:2881, 1/1/2943:2947	Isolated non-canonical cWW with bulges homologous IL_5TBW_108	NA IL_01312.13*
52	IL_5I4L_108	1/1/2881:2882, 1/1/2940:2943	Multiple bulged bases geometric IL_5TBW_109	NA IL_13730.12*
53	IL_5I4L_109	1/1/2889:2891, 1/1/2912:2914	geometric IL_5TBW_110	NA IL_01312.13*
54	IL_5I4L_110	1/1/2891:2892, 1/1/2909:2912	Minor groove platform with intercalation homologous IL_5TBW_111	NA IL_95601.1*
55	IL_5I4L_111	1/1/2918:2920, 1/1/2926:2928	homologous IL_5TBW_112	NA IL_01312.13*
56	IL_5I4L_113	1/1/3004:3007, 1/1/3139:3144	Double sheared homologous IL_5TBW_114	NA IL_09705.7*
57	IL_5I4L_114	1/1/3012:3014, 1/1/3040:3042	homologous IL_5TBW_115	NA IL_01312.13*
58	IL_5I4L_115	1/1/3018:3025, 1/1/3030:3036	8x7 Sarcin-Ricin; G-bulge geometric IL_5TBW_116	NA IL_04346.5*
59	IL_5I4L_116	1/1/3047:3051, 1/1/3091:3094	Major groove minor groove platform with tHH homologous IL_5TBW_117	NA IL_28060.3*
60	IL_5I4L_117	1/1/3054:3059, 1/1/3084:3088	UAA/GAN related homologous IL_5TBW_118	NA IL_53523.5*
61	IL_5I4L_118	1/1/3063:3064, 1/1/3077:3080	Multiple bulged bases homologous IL_5TBW_119	NA IL_13730.12*
62	IL_5I4L_119	1/1/3103:3107, 1/1/3127:3131	UAA/GAN homologous IL_5TBW_120	NA IL_53523.5*
63	IL_5I4L_120	1/1/3162:3166, 1/1/3284:3288	homologous IL_5TBW_121	NA IL_05867.1*
64	IL_5I4L_122	1/1/3177:3179, 1/1/3210:3211	Single bulged A homologous IL_5TBW_123	NA IL_80007.16*
65	IL_5I4L_123	1/1/3179:3188, 1/1/3204:3210	geometric IL_5TBW_124	NA IL_56867.1*
66	IL_5I4L_124	1/1/3193:3194, 1/1/3197:3199	Single bulged U geometric IL_5TBW_125	NA IL_83039.11*
67	IL_5I4L_125	1/1/3225:3229, 1/1/3258:3260	homologous IL_5TBW_126	NA IL_50789.1*
68	IL_5I4L_126	1/1/3233:3235, 1/1/3252:3254	homologous IL_5TBW_127	NA IL_01312.13*
69	IL_5I4L_127	1/1/3235:3238, 1/1/3249:3252	Tandem non-canonical cWW pairs geometric IL_5TBW_128	NA IL_85877.10*
70	IL_5I4L_128	1/1/3300:3303, 1/1/3311:3314	Tandem non-canonical cWW pairs homologous IL_5TBW_129	NA IL_85877.10*
71	IL_5I4L_129	1/1/3318:3320, 1/1/3387:3388	Single bulged U homologous IL_5TBW_130	NA IL_83039.11*
72	IL_5I4L_130	1/1/3324:3325, 1/1/3381:3383	Single bulged U homologous IL_5TBW_131	NA IL_21340.1*
73	IL_5I4L_131	1/1/3328:3330, 1/1/3373:3378	Isolated non-canonical cWW with bulges homologous IL_5TBW_132	NA IL_55456.1*
74	IL_5I4L_132	1/1/3332:3337, 1/1/3367:3371	homologous IL_5TBW_133	NA IL_47002.1*
75	IL_5I4L_133	1/1/3340:3342, 1/1/3363:3364	Single bulged U homologous IL_5TBW_134	NA IL_83039.11*
76	IL_5I4L_134	1/1/3342:3345, 1/1/3360:3363	tWS-tSW geometric IL_5TBW_135	NA IL_09705.7*
77	IL_5I4L_135	1/1/3349:3350, 1/1/3353:3356	Multiple bulged bases geometric IL_5TBW_136	NA IL_13730.12*
78	IL_5I4L_136	1/2/24:26, 1/2/600:601	Single bulged C homologous IL_4V88_384	NA IL_61258.10*
79	IL_5I4L_137	1/2/35:37, 1/2/471:473	UC cWW geometric IL_4V88_385	NA IL_01312.13*
80	IL_5I4L_138	1/2/37:41, 1/2/466:471	geometric IL_4V88_386	NA IL_53318.1*
81	IL_5I4L_139	1/2/42:48, 1/2/431:433	geometric IL_4V88_387	NA IL_34626.4*
82	IL_5I4L_140	1/2/50:52, 1/2/428:429	Minor groove platform homologous IL_4V88_388	NA IL_06437.11*
83	IL_5I4L_141	1/2/58:63, 1/2/87:89	homologous IL_4V88_389	NA IL_96451.1*
84	IL_5I4L_142	1/2/64:69, 1/2/82:86	homologous IL_4V88_390	NA IL_59423.1*
85	IL_5I4L_143	1/2/109:112, 1/2/302:305	Tandem non-canonical cWW pairs homologous IL_4V88_391	NA IL_85877.10*
86	IL_5I4L_144	1/2/113:116, 1/2/300:301	Multiple bulged bases homologous IL_4V88_392	NA IL_13730.12*
87	IL_5I4L_145	1/2/117:122, 1/2/295:299	homologous IL_4V88_393	NA IL_76386.1*
88	IL_5I4L_146	1/2/143:149, 1/2/165:172	tWH-tWH-tHW-tHW homologous IL_4V88_394	NA IL_92440.5*
89	IL_5I4L_147	1/2/150:152, 1/2/162:164	Isolated cWH basepair geometric IL_6RA4_002	NA IL_42589.6*
90	IL_5I4L_148	1/2/186:189, 1/2/196:199	Double sheared homologous IL_4V88_396	NA IL_09705.7*
91	IL_5I4L_149	1/2/204:206, 1/2/259:263	Major groove platform with extra cWW geometric IL_4V88_397	NA IL_95485.6*
92	IL_5I4L_150	1/2/206:208, 1/2/257:259	homologous IL_4V88_398	NA IL_01312.13*
93	IL_5I4L_151	1/2/265:267, 1/2/288:289	Single bulged A homologous IL_4V88_399	NA IL_80007.16*
94	IL_5I4L_152	1/2/270:273, 1/2/283:285	homologous IL_4V88_400	NA IL_05922.1*
95	IL_5I4L_153	1/2/311:316, 1/2/348:355	Kink-turn with non-sequential stacking homologous IL_4V88_402	NA IL_29549.9*
96	IL_5I4L_154	1/2/318:323, 1/2/345:346	homologous IL_4V88_403	NA IL_55658.1*
97	IL_5I4L_156	1/2/389:391, 1/2/406:408	Isolated cWH basepair homologous IL_4V88_405	NA IL_42589.6*
98	IL_5I4L_157	1/2/411:413, 1/2/420:422	Isolated near basepair homologous IL_4V88_406	NA IL_01312.13*
99	IL_5I4L_158	1/2/439:441, 1/2/463:464	Single bulged U geometric IL_4V88_407	NA IL_83039.11*
100	IL_5I4L_159	1/2/443:448, 1/2/458:461	C-loop with extra cWW pair homologous IL_4V88_408	NA IL_51590.1*
101	IL_5I4L_160	1/2/517:520, 1/2/532:535	Double sheared geometric IL_4LFB_060	NA IL_09705.7*
102	IL_5I4L_164	1/2/616:622, 1/2/1104:1105	homologous IL_4V88_416	NA IL_12418.1*
103	IL_5I4L_165	1/2/624:626, 1/2/973:975	homologous IL_4V88_417	NA IL_01312.13*
104	IL_5I4L_166	1/2/627:631, 1/2/968:972	tSH-tHW-tHS homologous IL_4V88_418	NA IL_39521.5*
105	IL_5I4L_173	1/2/865:866, 1/2/962:965	Major groove platform; stack outside cWW geometric IL_4V88_428	NA IL_70995.6*
106	IL_5I4L_174	1/2/868:870, 1/2/957:960	Single bulged G, near cWW geometric IL_6CZR_128	NA IL_01312.13*
107	IL_5I4L_175	1/2/871:874, 1/2/953:956	Tandem non-canonical cWW pairs homologous IL_4V88_430	NA IL_85877.10*
108	IL_5I4L_176	1/2/874:878, 1/2/950:953	Tandem non-canonical cWW pairs geometric IL_4V88_431	NA IL_85877.10*
109	IL_5I4L_177	1/2/885:888, 1/2/924:927	Tandem non-canonical cWW pairs homologous IL_4V88_432	NA IL_85877.10*
110	IL_5I4L_181	1/2/1034:1036, 1/2/1095:1101	homologous IL_4V88_437	NA IL_19557.1*
111	IL_5I4L_182	1/2/1041:1044, 1/2/1074:1077	Tandem non-canonical cWW pairs homologous

5I4L Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops