5NGM Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5NGM_001 | 1/AA/58:69 | No text annotation Not in a motif group | ||
| HL_5NGM_002 | 1/AA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_5NGM_003 | 1/AA/122:127 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_5NGM_004 | 1/AA/136:143 | No text annotation Not in a motif group | homologous HL_4WF9_004 HL_84085.2 | |
| HL_5NGM_005 | 1/AA/159:169 | No text annotation Not in a motif group | ||
| HL_5NGM_006 | 1/AA/197:204 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.2 | |
| HL_5NGM_007 | 1/AA/228:233 | No text annotation Not in a motif group | homologous HL_4WF9_007 HL_02862.2 | |
| HL_5NGM_008 | 1/AA/249:255 | No text annotation Not in a motif group | homologous HL_7A0S_008 HL_67216.7 | |
| HL_5NGM_009 | 1/AA/283:288 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_86373.2 | |
| HL_5NGM_010 | 1/AA/348:355 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_5NGM_011 | 1/AA/362:366 | No text annotation Not in a motif group | homologous HL_4WF9_011 HL_75407.1 | |
| HL_5NGM_012 | 1/AA/370:378 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_5NGM_013 | 1/AA/426:440 | No text annotation Not in a motif group | ||
| HL_5NGM_014 | 1/AA/456:463 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_5NGM_015 | 1/AA/508:513 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_5NGM_016 | 1/AA/533:538 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_5NGM_017 | 1/AA/587:594 | No text annotation Not in a motif group | homologous HL_4WF9_017 HL_50318.1 | |
| HL_5NGM_018 | 1/AA/609:618 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_018 HL_89380.2 | |
| HL_5NGM_019 | 1/AA/655:661 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_5NGM_020 | 1/AA/674:679 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_5NGM_021 | 1/AA/686:692 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_5NGM_022 | 1/AA/757:764 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_5NGM_023 | 1/AA/789:798 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_5NGM_024 | 1/AA/823:831 | No text annotation Not in a motif group | ||
| HL_5NGM_025 | 1/AA/871:876 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_64365.1 | |
| HL_5NGM_027 | 1/AA/999:1006 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_5NGM_028 | 1/AA/1022:1029 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.2 | |
| HL_5NGM_029 | 1/AA/1103:1123 | No text annotation Not in a motif group | ||
| HL_5NGM_030 | 1/AA/1214:1218 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_5NGM_031 | 1/AA/1260:1265 | No text annotation Not in a motif group | homologous HL_4WF9_031 HL_87030.2 | |
| HL_5NGM_032 | 1/AA/1318:1326 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_032 HL_89380.2 | |
| HL_5NGM_033 | 1/AA/1361:1367 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_5NGM_034 | 1/AA/1400:1405 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_5NGM_035 | 1/AA/1426:1435 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_5NGM_036 | 1/AA/1535:1541 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_5NGM_037 | 1/AA/1612:1615 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_5NGM_038 | 1/AA/1656:1663 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_5NGM_039 | 1/AA/1673:1681 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_5NGM_040 | 1/AA/1735:1740 | UNCG Not in a motif group | geometric HL_4WF9_040 HL_03562.2 | |
| HL_5NGM_041 | 1/AA/1760:1769 | No text annotation Not in a motif group | ||
| HL_5NGM_042 | 1/AA/1779:1783 | No text annotation Not in a motif group | homologous HL_4WF9_042 HL_76539.2 | |
| HL_5NGM_043 | 1/AA/1803:1815 | No text annotation Not in a motif group | ||
| HL_5NGM_044 | 1/AA/1833:1838 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_5NGM_045 | 1/AA/1891:1905 | No text annotation Not in a motif group | ||
| HL_5NGM_047 | 1/AA/1976:1984 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_5NGM_048 | 1/AA/2054:2063 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_5NGM_049 | 1/AA/2169:2176 | No text annotation Not in a motif group | ||
| HL_5NGM_050 | 1/AA/2236:2242 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_5NGM_051 | 1/AA/2275:2283 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_5NGM_052 | 1/AA/2291:2303 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_5NGM_054 | 1/AA/2351:2358 | No text annotation Not in a motif group | homologous HL_4WF9_052 HL_12078.2 | |
| HL_5NGM_055 | 1/AA/2382:2389 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_5NGM_056 | 1/AA/2401:2406 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_5NGM_057 | 1/AA/2431:2440 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_5NGM_058 | 1/AA/2498:2506 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_5NGM_059 | 1/AA/2555:2562 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_88526.2 | |
| HL_5NGM_060 | 1/AA/2578:2584 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_5NGM_061 | 1/AA/2621:2626 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.1 | |
| HL_5NGM_062 | 1/AA/2685:2690 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_5NGM_063 | 1/AA/2728:2733 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_46680.1 | |
| HL_5NGM_064 | 1/AA/2772:2786 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_5NGM_065 | 1/AA/2819:2824 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
| HL_5NGM_066 | 1/AA/2839:2847 | No text annotation Not in a motif group | homologous HL_4WF9_064 HL_27930.1 | |
| HL_5NGM_067 | 1/AA/2876:2881 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_5NGM_068 | 1/AB/36:42 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_87939.1 | |
| HL_5NGM_069 | 1/AB/83:88 | No text annotation Not in a motif group | geometric HL_7A0S_007 HL_02862.2 | |
| HL_5NGM_070 | 1/Aa/13:23 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5NGM_071 | 1/Aa/72:97 | No text annotation Not in a motif group | ||
| HL_5NGM_072 | 1/Aa/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_5NGM_073 | 1/Aa/190:201 | No text annotation Not in a motif group | ||
| HL_5NGM_074 | 1/Aa/216:223 | No text annotation Not in a motif group | ||
| HL_5NGM_075 | 1/Aa/267:275 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_5NGM_076 | 1/Aa/304:309 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_5NGM_077 | 1/Aa/328:341 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_5NGM_078 | 1/Aa/350:355 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_5NGM_079 | 1/Aa/386:393 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_5NGM_080 | 1/Aa/427:432 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_5NGM_081 | 1/Aa/470:479 | No text annotation Not in a motif group | ||
| HL_5NGM_082 | 1/Aa/530:535 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_5NGM_083 | 1/Aa/625:631 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_5NGM_084 | 1/Aa/697:706 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_5NGM_085 | 1/Aa/734:739 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_5NGM_086 | 1/Aa/794:804 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_5NGM_087 | 1/Aa/848:855 | No text annotation Not in a motif group | homologous HL_5J7L_018 HL_34168.2 | |
| HL_5NGM_088 | 1/Aa/871:876 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_5NGM_089 | 1/Aa/906:911 | GNRA Not in a motif group | homologous HL_6CZR_091 HL_42097.1 | |
| HL_5NGM_090 | 1/Aa/972:981 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5NGM_091 | 1/Aa/1021:1026 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_5NGM_092 | 1/Aa/1038:1043 | No text annotation Not in a motif group | geometric HL_7A0S_011 HL_75407.1 | |
| HL_5NGM_093 | 1/Aa/1087:1092 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_5NGM_094 | 1/Aa/1100:1107 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5NGM_095 | 1/Aa/1144:1151 | No text annotation Not in a motif group | ||
| HL_5NGM_096 | 1/Aa/1174:1182 | No text annotation Not in a motif group | ||
| HL_5NGM_097 | 1/Aa/1275:1280 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_5NGM_098 | 1/Aa/1324:1333 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_5NGM_099 | 1/Aa/1366:1376 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_5NGM_100 | 1/Aa/1459:1465 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_86373.2 | |
| HL_5NGM_101 | 1/Aa/1526:1531 | GNRA Not in a motif group | geometric HL_3NVI_002 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5NGM_026 | No text annotation | ||
| HL_5NGM_046 | No text annotation | ||
| HL_5NGM_053 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5NGM_001 | 1/AA/24:30, 1/AA/555:561 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_4WF9_001 IL_66414.6 | |
| IL_5NGM_002 | 1/AA/36:37, 1/AA/488:490 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_5NGM_003 | 1/AA/42:44, 1/AA/480:483 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_003 IL_65006.1 | |
| IL_5NGM_004 | 1/AA/80:85, 1/AA/97:105 | Kink-turn Not in a motif group | geometric IL_4LFB_031 IL_37722.1 | |
| IL_5NGM_005 | 1/AA/152:153, 1/AA/175:177 | Major groove platform Not in a motif group | geometric IL_3NKB_002 IL_27635.1 | |
| IL_5NGM_006 | 1/AA/157:159, 1/AA/169:171 | Isolated cWH basepair Not in a motif group | geometric IL_6F4H_001 IL_51629.2 | |
| IL_5NGM_007 | 1/AA/186:187, 1/AA/215:217 | Single stack bend Not in a motif group | homologous IL_5J7L_249 IL_76488.2 | |
| IL_5NGM_008 | 1/AA/190:197, 1/AA/204:212 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_008 IL_35728.2 | |
| IL_5NGM_009 | 1/AA/241:248, 1/AA/256:262 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_009 IL_04346.7 | |
| IL_5NGM_010 | 1/AA/305:306, 1/AA/409:412 | Minor groove platform Not in a motif group | geometric IL_7RQB_073 IL_88739.1 | |
| IL_5NGM_012 | 1/AA/319:327, 1/AA/399:400 | No text annotation Not in a motif group | ||
| IL_5NGM_013 | 1/AA/336:338, 1/AA/386:390 | No text annotation Not in a motif group | homologous IL_4WF9_014 IL_69440.1 | |
| IL_5NGM_014 | 1/AA/527:530, 1/AA/541:554 | No text annotation Not in a motif group | homologous IL_4WF9_015 IL_60992.6 | |
| IL_5NGM_015 | 1/AA/581:584, 1/AA/597:600 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_5NGM_016 | 1/AA/607:609, 1/AA/618:620 | No text annotation Not in a motif group | geometric IL_5J7L_257 IL_95997.1 | |
| IL_5NGM_017 | 1/AA/638:640, 1/AA/705:707 | No text annotation Not in a motif group | homologous IL_4WF9_018 IL_51629.2 | |
| IL_5NGM_018 | 1/AA/649:653, 1/AA/663:667 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_5NGM_019 | 1/AA/717:719, 1/AA/851:853 | No text annotation Not in a motif group | geometric IL_4WF9_020 IL_95997.1 | |
| IL_5NGM_020 | 1/AA/719:723, 1/AA/844:851 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_4WF9_021 IL_17470.6 | |
| IL_5NGM_021 | 1/AA/742:743, 1/AA/808:810 | Single bulged A Not in a motif group | homologous IL_4WF9_022 IL_37497.2 | |
| IL_5NGM_022 | 1/AA/747:748, 1/AA/773:775 | Single bulged G Not in a motif group | geometric IL_5J7L_262 IL_00225.2 | |
| IL_5NGM_023 | 1/AA/748:752, 1/AA/769:773 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_5NGM_024 | 1/AA/783:785, 1/AA/802:803 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.1 | |
| IL_5NGM_025 | 1/AA/820:822, 1/AA/832:836 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
| IL_5NGM_026 | 1/AA/881:883, 1/AA/984:987 | No text annotation Not in a motif group | ||
| IL_5NGM_027 | 1/AA/889:893, 1/AA/975:978 | No text annotation Not in a motif group | homologous IL_4WF9_029 IL_06300.1 | |
| IL_5NGM_028 | 1/AA/897:898, 1/AA/969:971 | No text annotation Not in a motif group | ||
| IL_5NGM_029 | 1/AA/901:907, 1/AA/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_4WF9_031 IL_93830.3 | |
| IL_5NGM_030 | 1/AA/907:908, 1/AA/958:960 | Minor groove platform Not in a motif group | homologous IL_4WF9_032 IL_42622.2 | |
| IL_5NGM_031 | 1/AA/909:913, 1/AA/954:957 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_5NGM_032 | 1/AA/920:924, 1/AA/943:947 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_5NGM_033 | 1/AA/1038:1040, 1/AA/1203:1204 | Single bulged C Not in a motif group | homologous IL_4WF9_035 IL_61258.12 | |
| IL_5NGM_034 | 1/AA/1042:1046, 1/AA/1197:1201 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_5NGM_035 | 1/AA/1048:1055, 1/AA/1194:1195 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.7 | |
| IL_5NGM_036 | 1/AA/1055:1057, 1/AA/1193:1194 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_5NGM_037 | 1/AA/1062:1068, 1/AA/1184:1188 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_5NGM_038 | 1/AA/1068:1074, 1/AA/1168:1184 | No text annotation Not in a motif group | geometric IL_4WF9_040 IL_50715.1 | |
| IL_5NGM_039 | 1/AA/1075:1078, 1/AA/1165:1167 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_84698.1 | |
| IL_5NGM_040 | 1/AA/1081:1083, 1/AA/1160:1162 | No text annotation Not in a motif group | homologous IL_4WF9_042 IL_95997.1 | |
| IL_5NGM_041 | 1/AA/1235:1237, 1/AA/1285:1288 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_5NGM_042 | 1/AA/1243:1245, 1/AA/1277:1279 | Isolated cWH basepair Not in a motif group | homologous IL_4WF9_045 IL_51629.2 | |
| IL_5NGM_043 | 1/AA/1246:1253, 1/AA/1272:1276 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_5NGM_044 | 1/AA/1257:1259, 1/AA/1266:1268 | Intercalated cWW Not in a motif group | homologous IL_4WF9_047 IL_82842.2 | |
| IL_5NGM_045 | 1/AA/1300:1307, 1/AA/2038:2044 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_048 IL_04346.7 | |
| IL_5NGM_046 | 1/AA/1356:1360, 1/AA/1368:1370 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_4WF9_050 IL_37712.2 | |
| IL_5NGM_047 | 1/AA/1388:1392, 1/AA/1413:1417 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_5NGM_048 | 1/AA/1394:1398, 1/AA/1407:1411 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_5NGM_049 | 1/AA/1447:1461, 1/AA/1627:1636 | No text annotation Not in a motif group | ||
| IL_5NGM_050 | 1/AA/1461:1465, 1/AA/1624:1627 | Other IL Not in a motif group | homologous IL_4WF9_054 IL_04059.1 | |
| IL_5NGM_051 | 1/AA/1476:1480, 1/AA/1604:1608 | No text annotation Not in a motif group | ||
| IL_5NGM_052 | 1/AA/1481:1485, 1/AA/1598:1603 | No text annotation Not in a motif group | ||
| IL_5NGM_053 | 1/AA/1485:1511, 1/AA/1570:1598 | No text annotation Not in a motif group | ||
| IL_5NGM_054 | 1/AA/1511:1516, 1/AA/1564:1570 | No text annotation Not in a motif group | homologous IL_4WF9_058 IL_88190.1 | |
| IL_5NGM_055 | 1/AA/1518:1522, 1/AA/1558:1562 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.1 | |
| IL_5NGM_056 | 1/AA/1523:1526, 1/AA/1549:1557 | No text annotation Not in a motif group | ||
| IL_5NGM_057 | 1/AA/1532:1534, 1/AA/1542:1543 | No text annotation Not in a motif group | ||
| IL_5NGM_058 | 1/AA/1695:1700, 1/AA/2031:2033 | No text annotation Not in a motif group | homologous IL_4WF9_062 IL_12566.2 | |
| IL_5NGM_059 | 1/AA/1707:1709, 1/AA/2022:2024 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
| IL_5NGM_060 | 1/AA/1710:1713, 1/AA/2020:2021 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_5NGM_061 | 1/AA/1713:1718, 1/AA/2017:2020 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_82842.2 | |
| IL_5NGM_062 | 1/AA/1730:1735, 1/AA/1740:1746 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_5NGM_063 | 1/AA/1756:1759, 1/AA/1770:1773 | No text annotation Not in a motif group | ||
| IL_5NGM_064 | 1/AA/1797:1798, 1/AA/2007:2009 | Single bulged A Not in a motif group | homologous IL_7A0S_064 IL_37497.2 | |
| IL_5NGM_065 | 1/AA/1825:1831, 1/AA/1840:1848 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_5NGM_066 | 1/AA/1864:1867, 1/AA/1929:1930 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_5NGM_067 | 1/AA/1868:1869, 1/AA/1925:1928 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_5NGM_068 | 1/AA/1873:1876, 1/AA/1920:1921 | No text annotation Not in a motif group | ||
| IL_5NGM_069 | 1/AA/1878:1882, 1/AA/1914:1918 | UAA/GAN with extra pair Not in a motif group | homologous IL_4WF9_073 IL_90318.1 | |
| IL_5NGM_070 | 1/AA/1883:1887, 1/AA/1909:1913 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_5NGM_071 | 1/AA/1961:1972, 1/AA/1988:1991 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_5NGM_072 | 1/AA/2077:2079, 1/AA/2644:2645 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_5NGM_073 | 1/AA/2081:2083, 1/AA/2639:2642 | No text annotation Not in a motif group | ||
| IL_5NGM_074 | 1/AA/2094:2096, 1/AA/2469:2470 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_5NGM_075 | 1/AA/2097:2098, 1/AA/2465:2468 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_5NGM_076 | 1/AA/2108:2110, 1/AA/2263:2266 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7A0S_077 IL_38958.7 | |
| IL_5NGM_077 | 1/AA/2123:2125, 1/AA/2218:2220 | No text annotation Not in a motif group | geometric IL_4P3T_006 IL_95997.1 | |
| IL_5NGM_078 | 1/AA/2156:2169, 1/AA/2176:2186 | No text annotation Not in a motif group | ||
| IL_5NGM_079 | 1/AA/2229:2231, 1/AA/2247:2248 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_5NGM_080 | 1/AA/2324:2326, 1/AA/2344:2348 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 IL_38958.7 | |
| IL_5NGM_081 | 1/AA/2377:2380, 1/AA/2391:2394 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_5NGM_082 | 1/AA/2428:2430, 1/AA/2441:2442 | Single bulged U Not in a motif group | homologous IL_5J7L_334 IL_83039.13 | |
| IL_5NGM_083 | 1/AA/2480:2481, 1/AA/2525:2527 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_5NGM_084 | 1/AA/2481:2482, 1/AA/2523:2525 | Major groove platform Not in a motif group | homologous IL_4WF9_090 IL_27635.1 | |
| IL_5NGM_085 | 1/AA/2484:2486, 1/AA/2520:2521 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_5NGM_086 | 1/AA/2486:2488, 1/AA/2516:2520 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_5NGM_087 | 1/AA/2493:2497, 1/AA/2507:2511 | Triple sheared Not in a motif group | homologous IL_4WF9_093 IL_56467.8 | |
| IL_5NGM_088 | 1/AA/2534:2535, 1/AA/2607:2609 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_5NGM_089 | 1/AA/2537:2539, 1/AA/2601:2605 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_095 IL_90933.2 | |
| IL_5NGM_090 | 1/AA/2539:2540, 1/AA/2598:2601 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_5NGM_091 | 1/AA/2549:2550, 1/AA/2567:2570 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_5NGM_092 | 1/AA/2618:2619, 1/AA/2628:2630 | Single bulged A Not in a motif group | geometric IL_4V9F_090 IL_37497.2 | |
| IL_5NGM_093 | 1/AA/2663:2667, 1/AA/2801:2809 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_5NGM_094 | 1/AA/2679:2685, 1/AA/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
| IL_5NGM_095 | 1/AA/2707:2711, 1/AA/2752:2754 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_5NGM_096 | 1/AA/2714:2718, 1/AA/2745:2749 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_5NGM_097 | 1/AA/2722:2723, 1/AA/2738:2741 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_5NGM_098 | 1/AA/2764:2769, 1/AA/2789:2794 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_5NGM_099 | 1/AA/2858:2859, 1/AA/2898:2900 | Major groove intercalation Not in a motif group | homologous IL_4WF9_106 IL_16396.2 | |
| IL_5NGM_100 | 1/AA/2863:2865, 1/AA/2891:2894 | No text annotation Not in a motif group | homologous IL_4WF9_107 IL_02284.5 | |
| IL_5NGM_101 | 1/AA/2867:2872, 1/AA/2885:2889 | No text annotation Not in a motif group | homologous IL_4WF9_108 IL_83162.5 | |
| IL_5NGM_102 | 1/AB/15:16, 1/AB/63:65 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.2 | |
| IL_5NGM_103 | 1/AB/21:27, 1/AB/53:58 | No text annotation Not in a motif group | ||
| IL_5NGM_104 | 1/AB/28:29, 1/AB/49:52 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_5NGM_105 | 1/AB/32:36, 1/AB/42:46 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_5NGM_106 | 1/AB/69:77, 1/AB/94:102 | Bacterial 5S Loop E Not in a motif group | homologous IL_7A0S_106 IL_56455.3 | |
| IL_5NGM_107 | 1/AB/78:80, 1/AB/91:93 | No text annotation Not in a motif group | homologous IL_7A0S_107 IL_51629.2 | |
| IL_5NGM_108 | 1/Aa/31:33, 1/Aa/560:561 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_5NGM_109 | 1/Aa/45:46, 1/Aa/404:406 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_5NGM_110 | 1/Aa/48:53, 1/Aa/367:369 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_5NGM_111 | 1/Aa/54:57, 1/Aa/364:366 | No text annotation Not in a motif group | ||
| IL_5NGM_112 | 1/Aa/64:67, 1/Aa/102:103 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_5NGM_113 | 1/Aa/68:71, 1/Aa/98:101 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5LQO_002 IL_30621.2 | |
| IL_5NGM_114 | 1/Aa/128:131, 1/Aa/239:240 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_5NGM_115 | 1/Aa/132:136, 1/Aa/235:238 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.3 | |
| IL_5NGM_116 | 1/Aa/147:153, 1/Aa/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_5NGM_117 | 1/Aa/187:190, 1/Aa/201:203 | No text annotation Not in a motif group | geometric IL_4WSM_372 IL_33061.1 | |
| IL_5NGM_118 | 1/Aa/250:255, 1/Aa/285:292 | No text annotation Not in a motif group | ||
| IL_5NGM_119 | 1/Aa/256:261, 1/Aa/281:284 | No text annotation Not in a motif group | ||
| IL_5NGM_120 | 1/Aa/300:301, 1/Aa/312:316 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5NGM_121 | 1/Aa/375:377, 1/Aa/400:401 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
| IL_5NGM_122 | 1/Aa/379:383, 1/Aa/397:398 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_5NGM_123 | 1/Aa/383:384, 1/Aa/395:397 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_5NGM_124 | 1/Aa/417:427, 1/Aa/432:441 | No text annotation Not in a motif group | ||
| IL_5NGM_125 | 1/Aa/454:458, 1/Aa/491:496 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_5NGM_126 | 1/Aa/512:519, 1/Aa/548:549 | SSU/LSU pseudoknot Not in a motif group | homologous IL_6CZR_132 IL_15861.7 | |
| IL_5NGM_127 | 1/Aa/523:529, 1/Aa/536:544 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_5NGM_128 | 1/Aa/577:583, 1/Aa/889:890 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
| IL_5NGM_129 | 1/Aa/588:592, 1/Aa/765:769 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_5NGM_130 | 1/Aa/598:600, 1/Aa/655:657 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_5NGM_131 | 1/Aa/602:604, 1/Aa/652:653 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_5NGM_132 | 1/Aa/605:606, 1/Aa/648:651 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_5NGM_133 | 1/Aa/612:620, 1/Aa/636:642 | No text annotation Not in a motif group | ||
| IL_5NGM_134 | 1/Aa/662:663, 1/Aa/759:762 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_5NGM_135 | 1/Aa/665:666, 1/Aa/755:757 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_5NGM_136 | 1/Aa/669:674, 1/Aa/748:752 | No text annotation Not in a motif group | ||
| IL_5NGM_137 | 1/Aa/681:686, 1/Aa/720:725 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_5NGM_138 | 1/Aa/692:696, 1/Aa/707:714 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_5NGM_139 | 1/Aa/782:787, 1/Aa/811:813 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_5NGM_140 | 1/Aa/787:791, 1/Aa/807:811 | tSH-tHW-tHS Not in a motif group | geometric IL_4LFB_033 IL_17136.1 | |
| IL_5NGM_141 | 1/Aa/896:903, 1/Aa/914:919 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5NGM_142 | 1/Aa/931:932, 1/Aa/1403:1405 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_5NGM_143 | 1/Aa/934:936, 1/Aa/1400:1401 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_5NGM_144 | 1/Aa/942:944, 1/Aa/1390:1394 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_5NGM_145 | 1/Aa/962:963, 1/Aa/1236:1238 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_5NGM_146 | 1/Aa/1002:1006, 1/Aa/1055:1056 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
| IL_5NGM_147 | 1/Aa/1006:1010, 1/Aa/1050:1055 | No text annotation Not in a motif group | ||
| IL_5NGM_148 | 1/Aa/1059:1061, 1/Aa/1218:1219 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_5NGM_149 | 1/Aa/1062:1067, 1/Aa/1214:1217 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_5NGM_150 | 1/Aa/1068:1069, 1/Aa/1209:1213 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_5NGM_151 | 1/Aa/1071:1072, 1/Aa/1205:1207 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_5NGM_152 | 1/Aa/1072:1074, 1/Aa/1203:1205 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_5NGM_153 | 1/Aa/1257:1263, 1/Aa/1294:1300 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_5NGM_154 | 1/Aa/1265:1268, 1/Aa/1287:1292 | No text annotation Not in a motif group | ||
| IL_5NGM_155 | 1/Aa/1269:1274, 1/Aa/1281:1286 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_1L9A_008 IL_76308.4 | |
| IL_5NGM_156 | 1/Aa/1313:1318, 1/Aa/1339:1344 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_5NGM_157 | 1/Aa/1409:1411, 1/Aa/1512:1515 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
| IL_5NGM_158 | 1/Aa/1411:1414, 1/Aa/1508:1512 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5NGM_159 | 1/Aa/1415:1417, 1/Aa/1505:1507 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_5NGM_160 | 1/Aa/1417:1419, 1/Aa/1502:1505 | No text annotation Not in a motif group | geometric IL_4V9F_072 IL_63450.2 | |
| IL_5NGM_161 | 1/Aa/1422:1424, 1/Aa/1497:1499 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_5NGM_162 | 1/Aa/1426:1429, 1/Aa/1492:1495 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_5NGM_163 | 1/Aa/1434:1437, 1/Aa/1484:1487 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5LQO_002 IL_30621.2 | |
| IL_5NGM_164 | 1/Aa/1440:1445, 1/Aa/1477:1481 | Triple sheared related Not in a motif group | geometric IL_5J7L_063 IL_64879.2 | |
| IL_5NGM_165 | 1/Aa/1445:1447, 1/Aa/1475:1477 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_5NGM_166 | 1/Aa/1450:1453, 1/Aa/1470:1472 | No text annotation Not in a motif group | ||
| IL_5NGM_167 | 1/Aa/1455:1458, 1/Aa/1466:1468 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5NGM_011 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5NGM_001 | 1/AA/30:31, 1/AA/520:527, 1/AA/554:555 | No text annotation Not in a motif group | ||
| J3_5NGM_002 | 1/AA/56:57, 1/AA/70:76, 1/AA/109:113 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_5NGM_003 | 1/AA/272:276, 1/AA/295:302, 1/AA/415:416 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_5NGM_004 | 1/AA/728:734, 1/AA/818:820, 1/AA/836:839 | No text annotation Not in a motif group | ||
| J3_5NGM_005 | 1/AA/743:745, 1/AA/777:781, 1/AA/805:808 | No text annotation Not in a motif group | ||
| J3_5NGM_006 | 1/AA/1335:1340, 1/AA/1669:1671, 1/AA/1683:1686 | No text annotation Not in a motif group | homologous J3_4WF9_004 NA | |
| J3_5NGM_007 | 1/AA/1342:1346, 1/AA/1649:1655, 1/AA/1664:1667 | No text annotation Not in a motif group | homologous J3_4WF9_005 NA | |
| J3_5NGM_008 | 1/AA/2118:2120, 1/AA/2223:2229, 1/AA/2248:2255 | No text annotation Not in a motif group | ||
| J3_5NGM_009 | 1/AA/2322:2324, 1/AA/2348:2350, 1/AA/2359:2364 | No text annotation Not in a motif group | ||
| J3_5NGM_010 | 1/AA/2544:2547, 1/AA/2572:2574, 1/AA/2588:2594 | No text annotation Not in a motif group | ||
| J3_5NGM_011 | 1/AA/2816:2817, 1/AA/2826:2831, 1/AA/2909:2913 | No text annotation Not in a motif group | homologous J3_7RQB_013 NA | |
| J3_5NGM_012 | 1/AA/2834:2835, 1/AA/2851:2856, 1/AA/2902:2906 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA | |
| J3_5NGM_013 | 1/AB/9:14, 1/AB/66:68, 1/AB/103:106 | No text annotation Not in a motif group | ||
| J3_5NGM_014 | 1/Aa/47:48, 1/Aa/369:375, 1/Aa/401:403 | No text annotation Not in a motif group | ||
| J3_5NGM_015 | 1/Aa/594:596, 1/Aa/659:662, 1/Aa/762:763 | No text annotation Not in a motif group | ||
| J3_5NGM_016 | 1/Aa/680:681, 1/Aa/725:733, 1/Aa/740:742 | No text annotation Not in a motif group | ||
| J3_5NGM_017 | 1/Aa/834:837, 1/Aa/866:870, 1/Aa/877:883 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_5NGM_018 | 1/Aa/945:948, 1/Aa/1354:1360, 1/Aa/1382:1389 | No text annotation Not in a motif group | ||
| J3_5NGM_019 | 1/Aa/952:955, 1/Aa/1245:1247, 1/Aa/1347:1350 | No text annotation Not in a motif group | ||
| J3_5NGM_020 | 1/Aa/964:971, 1/Aa/982:993, 1/Aa/1231:1235 | No text annotation Not in a motif group | ||
| J3_5NGM_021 | 1/Aa/999:1002, 1/Aa/1056:1058, 1/Aa/1220:1225 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_5NGM_022 | 1/Aa/1074:1079, 1/Aa/1118:1124, 1/Aa/1197:1203 | No text annotation Not in a motif group | ||
| J3_5NGM_023 | 1/Aa/1084:1085, 1/Aa/1094:1098, 1/Aa/1109:1113 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_5NGM_024 | 1/Aa/1247:1251, 1/Aa/1306:1313, 1/Aa/1344:1347 | No text annotation Not in a motif group | homologous J3_5J7L_011 NA |
Problematic loops
No problematic loops
Coloring options: