Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5NGM_0011/AA/58:69No text annotation
Not in a motif group
HL_5NGM_0021/AA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_5NGM_0031/AA/122:127No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_70546.1
HL_5NGM_0041/AA/136:143No text annotation
Not in a motif group
homologous
HL_4WF9_004
HL_84085.2
HL_5NGM_0051/AA/159:169No text annotation
Not in a motif group
HL_5NGM_0061/AA/197:204No text annotation
Not in a motif group
geometric
HL_5J7L_139
HL_06192.2
HL_5NGM_0071/AA/228:233No text annotation
Not in a motif group
homologous
HL_4WF9_007
HL_02862.2
HL_5NGM_0081/AA/249:255No text annotation
Not in a motif group
homologous
HL_7A0S_008
HL_67216.7
HL_5NGM_0091/AA/283:288No text annotation
Not in a motif group
geometric
HL_5TBW_012
HL_86373.3
HL_5NGM_0101/AA/348:355T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_5NGM_0111/AA/362:366No text annotation
Not in a motif group
homologous
HL_4WF9_011
HL_70546.1
HL_5NGM_0121/AA/370:378No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.9
HL_5NGM_0131/AA/426:440No text annotation
Not in a motif group
HL_5NGM_0141/AA/456:463No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_5NGM_0151/AA/508:513GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_35490.1
HL_5NGM_0161/AA/533:538No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_35490.1
HL_5NGM_0171/AA/587:594No text annotation
Not in a motif group
homologous
HL_4WF9_017
HL_50318.1
HL_5NGM_0181/AA/609:618T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4WF9_018
HL_89380.2
HL_5NGM_0191/AA/655:661No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_5NGM_0201/AA/674:679GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_35490.1
HL_5NGM_0211/AA/686:692No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_35490.1
HL_5NGM_0221/AA/757:764No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_70546.1
HL_5NGM_0231/AA/789:798No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_5NGM_0241/AA/823:831No text annotation
Not in a motif group
HL_5NGM_0251/AA/871:876No text annotation
Not in a motif group
homologous
HL_4WF9_025
HL_53619.1
HL_5NGM_0271/AA/999:1006GNRA
Not in a motif group
homologous
HL_4WF9_027
HL_35490.1
HL_5NGM_0281/AA/1022:1029No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_5NGM_0291/AA/1103:1123No text annotation
Not in a motif group
HL_5NGM_0301/AA/1214:1218No text annotation
Not in a motif group
geometric
HL_4YAZ_004
HL_91104.1
HL_5NGM_0311/AA/1260:1265No text annotation
Not in a motif group
homologous
HL_4WF9_031
HL_87030.2
HL_5NGM_0321/AA/1318:1326T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4WF9_032
HL_89380.2
HL_5NGM_0331/AA/1361:1367No text annotation
Not in a motif group
homologous
HL_7RQB_034
HL_46680.1
HL_5NGM_0341/AA/1400:1405Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_5NGM_0351/AA/1426:1435No text annotation
Not in a motif group
homologous
HL_4WF9_035
HL_69023.2
HL_5NGM_0361/AA/1535:1541No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_5NGM_0371/AA/1612:1615No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.4
HL_5NGM_0381/AA/1656:1663No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_5NGM_0391/AA/1673:1681No text annotation
Not in a motif group
homologous
HL_4WF9_039
HL_92229.2
HL_5NGM_0401/AA/1735:1740UNCG
Not in a motif group
geometric
HL_4WF9_040
HL_03562.2
HL_5NGM_0411/AA/1760:1769No text annotation
Not in a motif group
HL_5NGM_0421/AA/1779:1783No text annotation
Not in a motif group
homologous
HL_4WF9_042
HL_76539.4
HL_5NGM_0431/AA/1803:1815No text annotation
Not in a motif group
HL_5NGM_0441/AA/1833:1838No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_35490.1
HL_5NGM_0451/AA/1891:1905No text annotation
Not in a motif group
HL_5NGM_0471/AA/1976:1984No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_51824.1
HL_5NGM_0481/AA/2054:2063No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_5NGM_0491/AA/2169:2176No text annotation
Not in a motif group
HL_5NGM_0501/AA/2236:2242No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_5NGM_0511/AA/2275:2283No text annotation
Not in a motif group
homologous
HL_5J7L_186
NA
HL_5NGM_0521/AA/2291:2303No text annotation
Not in a motif group
homologous
HL_4WF9_050
HL_19870.6
HL_5NGM_0541/AA/2351:2358No text annotation
Not in a motif group
homologous
HL_4WF9_052
HL_12078.3
HL_5NGM_0551/AA/2382:2389No text annotation
Not in a motif group
homologous
HL_4WF9_053
HL_53619.1
HL_5NGM_0561/AA/2401:2406GNRA
Not in a motif group
homologous
HL_5J7L_191
HL_35490.1
HL_5NGM_0571/AA/2431:2440No text annotation
Not in a motif group
homologous
HL_7A0S_058
HL_40210.1
HL_5NGM_0581/AA/2498:2506No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_5NGM_0591/AA/2555:2562No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_91104.1
HL_5NGM_0601/AA/2578:2584No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_5NGM_0611/AA/2621:2626GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_35490.1
HL_5NGM_0621/AA/2685:2690GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_35490.1
HL_5NGM_0631/AA/2728:2733Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_5NGM_0641/AA/2772:2786No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_5NGM_0651/AA/2819:2824No text annotation
Not in a motif group
geometric
HL_4V88_198
HL_91104.1
HL_5NGM_0661/AA/2839:2847No text annotation
Not in a motif group
homologous
HL_4WF9_064
HL_64690.1
HL_5NGM_0671/AA/2876:2881No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_35490.1
HL_5NGM_0681/AB/36:42No text annotation
Not in a motif group
homologous
HL_7RQB_070
HL_87939.2
HL_5NGM_0691/AB/83:88No text annotation
Not in a motif group
geometric
HL_7A0S_007
HL_02862.2
HL_5NGM_0701/Aa/13:23No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_5NGM_0711/Aa/72:97No text annotation
Not in a motif group
HL_5NGM_0721/Aa/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_35490.1
HL_5NGM_0731/Aa/190:201No text annotation
Not in a motif group
HL_5NGM_0741/Aa/216:223No text annotation
Not in a motif group
HL_5NGM_0751/Aa/267:275No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_5NGM_0761/Aa/304:309GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_35490.1
HL_5NGM_0771/Aa/328:341No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_5NGM_0781/Aa/350:355No text annotation
Not in a motif group
homologous
HL_6CZR_080
HL_03562.2
HL_5NGM_0791/Aa/386:393No text annotation
Not in a motif group
geometric
HL_7A0S_056
HL_84085.2
HL_5NGM_0801/Aa/427:432No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_5NGM_0811/Aa/470:479No text annotation
Not in a motif group
HL_5NGM_0821/Aa/530:535No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_70546.1
HL_5NGM_0831/Aa/625:631No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.3
HL_5NGM_0841/Aa/697:706No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_5NGM_0851/Aa/734:739Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_5NGM_0861/Aa/794:804No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_5NGM_0871/Aa/848:855No text annotation
Not in a motif group
homologous
HL_5J7L_018
HL_34168.2
HL_5NGM_0881/Aa/871:876GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_35490.1
HL_5NGM_0891/Aa/906:911GNRA
Not in a motif group
homologous
HL_6CZR_091
HL_35490.1
HL_5NGM_0901/Aa/972:981No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_5NGM_0911/Aa/1021:1026No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_70546.1
HL_5NGM_0921/Aa/1038:1043No text annotation
Not in a motif group
geometric
HL_7A0S_011
HL_70546.1
HL_5NGM_0931/Aa/1087:1092GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_35490.1
HL_5NGM_0941/Aa/1100:1107No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_5NGM_0951/Aa/1144:1151No text annotation
Not in a motif group
HL_5NGM_0961/Aa/1174:1182No text annotation
Not in a motif group
HL_5NGM_0971/Aa/1275:1280GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_35490.1
HL_5NGM_0981/Aa/1324:1333No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_5NGM_0991/Aa/1366:1376No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_5NGM_1001/Aa/1459:1465No text annotation
Not in a motif group
geometric
HL_5TBW_012
HL_86373.3
HL_5NGM_1011/Aa/1526:1531GNRA
Not in a motif group
geometric
HL_3NVI_002
HL_35490.1

Problematic loops

#loop idProblemSequence
HL_5NGM_026No text annotation
HL_5NGM_046No text annotation
HL_5NGM_053No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5NGM_0011/AA/24:30,
1/AA/555:561
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_4WF9_001
IL_66414.6
IL_5NGM_0021/AA/36:37,
1/AA/488:490
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.5
IL_5NGM_0031/AA/42:44,
1/AA/480:483
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_4WF9_003
IL_65006.1
IL_5NGM_0041/AA/80:85,
1/AA/97:105
Kink-turn
Not in a motif group
geometric
IL_4LFB_031
IL_37722.1
IL_5NGM_0051/AA/152:153,
1/AA/175:177
Major groove platform
Not in a motif group
geometric
IL_3NKB_002
IL_27635.3
IL_5NGM_0061/AA/157:159,
1/AA/169:171
Isolated cWH basepair
Not in a motif group
geometric
IL_6F4H_001
IL_70707.1
IL_5NGM_0071/AA/186:187,
1/AA/215:217
Single stack bend
Not in a motif group
homologous
IL_5J7L_249
IL_76488.3
IL_5NGM_0081/AA/190:197,
1/AA/204:212
9x8 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4WF9_008
IL_35728.2
IL_5NGM_0091/AA/241:248,
1/AA/256:262
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4WF9_009
IL_04346.7
IL_5NGM_0101/AA/305:306,
1/AA/409:412
Minor groove platform
Not in a motif group
geometric
IL_7RQB_073
IL_88739.2
IL_5NGM_0121/AA/319:327,
1/AA/399:400
No text annotation
Not in a motif group
IL_5NGM_0131/AA/336:338,
1/AA/386:390
No text annotation
Not in a motif group
homologous
IL_4WF9_014
IL_69440.1
IL_5NGM_0141/AA/527:530,
1/AA/541:554
No text annotation
Not in a motif group
homologous
IL_4WF9_015
IL_60992.6
IL_5NGM_0151/AA/581:584,
1/AA/597:600
Double sheared
Not in a motif group
homologous
IL_4WF9_016
IL_09705.10
IL_5NGM_0161/AA/607:609,
1/AA/618:620
No text annotation
Not in a motif group
geometric
IL_5J7L_257
IL_86319.2
IL_5NGM_0171/AA/638:640,
1/AA/705:707
No text annotation
Not in a motif group
homologous
IL_4WF9_018
IL_70707.1
IL_5NGM_0181/AA/649:653,
1/AA/663:667
AAA cross-strand stack
Not in a motif group
homologous
IL_4WF9_019
IL_17136.1
IL_5NGM_0191/AA/717:719,
1/AA/851:853
No text annotation
Not in a motif group
geometric
IL_4WF9_020
IL_86319.2
IL_5NGM_0201/AA/719:723,
1/AA/844:851
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_4WF9_021
IL_17470.6
IL_5NGM_0211/AA/742:743,
1/AA/808:810
Single bulged A
Not in a motif group
homologous
IL_4WF9_022
IL_37497.5
IL_5NGM_0221/AA/747:748,
1/AA/773:775
Single bulged G
Not in a motif group
geometric
IL_5J7L_262
IL_00225.3
IL_5NGM_0231/AA/748:752,
1/AA/769:773
Triple sheared
Not in a motif group
homologous
IL_7RQB_021
IL_56467.8
IL_5NGM_0241/AA/783:785,
1/AA/802:803
Major groove platform
Not in a motif group
homologous
IL_4WF9_026
IL_27635.3
IL_5NGM_0251/AA/820:822,
1/AA/832:836
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_265
IL_90991.6
IL_5NGM_0261/AA/881:883,
1/AA/984:987
No text annotation
Not in a motif group
IL_5NGM_0271/AA/889:893,
1/AA/975:978
No text annotation
Not in a motif group
homologous
IL_4WF9_029
IL_06300.1
IL_5NGM_0281/AA/897:898,
1/AA/969:971
No text annotation
Not in a motif group
IL_5NGM_0291/AA/901:907,
1/AA/960:966
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_4WF9_031
IL_93830.3
IL_5NGM_0301/AA/907:908,
1/AA/958:960
Minor groove platform
Not in a motif group
homologous
IL_4WF9_032
IL_42622.3
IL_5NGM_0311/AA/909:913,
1/AA/954:957
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_5NGM_0321/AA/920:924,
1/AA/943:947
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_5NGM_0331/AA/1038:1040,
1/AA/1203:1204
Single bulged C
Not in a motif group
homologous
IL_4WF9_035
IL_61258.12
IL_5NGM_0341/AA/1042:1046,
1/AA/1197:1201
UAA/GAN
Not in a motif group
homologous
IL_4WF9_036
IL_89002.2
IL_5NGM_0351/AA/1048:1055,
1/AA/1194:1195
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.7
IL_5NGM_0361/AA/1055:1057,
1/AA/1193:1194
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.16
IL_5NGM_0371/AA/1062:1068,
1/AA/1184:1188
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_5NGM_0381/AA/1068:1074,
1/AA/1168:1184
No text annotation
Not in a motif group
geometric
IL_4WF9_040
IL_50715.1
IL_5NGM_0391/AA/1075:1078,
1/AA/1165:1167
Other IL
Not in a motif group
geometric
IL_5TBW_064
IL_84698.1
IL_5NGM_0401/AA/1081:1083,
1/AA/1160:1162
No text annotation
Not in a motif group
homologous
IL_4WF9_042
IL_70707.1
IL_5NGM_0411/AA/1235:1237,
1/AA/1285:1288
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_044
IL_52767.4
IL_5NGM_0421/AA/1243:1245,
1/AA/1277:1279
Isolated cWH basepair
Not in a motif group
homologous
IL_4WF9_045
IL_70707.1
IL_5NGM_0431/AA/1246:1253,
1/AA/1272:1276
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_5NGM_0441/AA/1257:1259,
1/AA/1266:1268
Intercalated cWW
Not in a motif group
homologous
IL_4WF9_047
IL_64417.2
IL_5NGM_0451/AA/1300:1307,
1/AA/2038:2044
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4WF9_048
IL_04346.7
IL_5NGM_0461/AA/1356:1360,
1/AA/1368:1370
Major groove minor groove platform with tHH
Not in a motif group
homologous
IL_4WF9_050
IL_37712.2
IL_5NGM_0471/AA/1388:1392,
1/AA/1413:1417
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_5NGM_0481/AA/1394:1398,
1/AA/1407:1411
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_5NGM_0491/AA/1447:1461,
1/AA/1627:1636
No text annotation
Not in a motif group
IL_5NGM_0501/AA/1461:1465,
1/AA/1624:1627
Other IL
Not in a motif group
homologous
IL_4WF9_054
IL_04059.1
IL_5NGM_0511/AA/1476:1480,
1/AA/1604:1608
No text annotation
Not in a motif group
IL_5NGM_0521/AA/1481:1485,
1/AA/1598:1603
No text annotation
Not in a motif group
IL_5NGM_0531/AA/1485:1511,
1/AA/1570:1598
No text annotation
Not in a motif group
IL_5NGM_0541/AA/1511:1516,
1/AA/1564:1570
No text annotation
Not in a motif group
homologous
IL_4WF9_058
IL_88190.1
IL_5NGM_0551/AA/1518:1522,
1/AA/1558:1562
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_5NGM_0561/AA/1523:1526,
1/AA/1549:1557
No text annotation
Not in a motif group
IL_5NGM_0571/AA/1532:1534,
1/AA/1542:1543
No text annotation
Not in a motif group
IL_5NGM_0581/AA/1695:1700,
1/AA/2031:2033
No text annotation
Not in a motif group
homologous
IL_4WF9_062
IL_12566.2
IL_5NGM_0591/AA/1707:1709,
1/AA/2022:2024
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.7
IL_5NGM_0601/AA/1710:1713,
1/AA/2020:2021
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_066
IL_50694.2
IL_5NGM_0611/AA/1713:1718,
1/AA/2017:2020
Intercalated tWH
Not in a motif group
geometric
IL_4WF9_065
IL_76273.1
IL_5NGM_0621/AA/1730:1735,
1/AA/1740:1746
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_7RQB_068
IL_65969.2
IL_5NGM_0631/AA/1756:1759,
1/AA/1770:1773
No text annotation
Not in a motif group
IL_5NGM_0641/AA/1797:1798,
1/AA/2007:2009
Single bulged A
Not in a motif group
homologous
IL_7A0S_064
IL_37497.5
IL_5NGM_0651/AA/1825:1831,
1/AA/1840:1848
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_5NGM_0661/AA/1864:1867,
1/AA/1929:1930
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.2
IL_5NGM_0671/AA/1868:1869,
1/AA/1925:1928
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_5NGM_0681/AA/1873:1876,
1/AA/1920:1921
No text annotation
Not in a motif group
IL_5NGM_0691/AA/1878:1882,
1/AA/1914:1918
UAA/GAN with extra pair
Not in a motif group
homologous
IL_4WF9_073
IL_90318.1
IL_5NGM_0701/AA/1883:1887,
1/AA/1909:1913
Triple sheared
Not in a motif group
homologous
IL_7RQB_075
IL_56467.8
IL_5NGM_0711/AA/1961:1972,
1/AA/1988:1991
No text annotation
Not in a motif group
homologous
IL_7A0S_072
IL_81589.2
IL_5NGM_0721/AA/2077:2079,
1/AA/2644:2645
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.3
IL_5NGM_0731/AA/2081:2083,
1/AA/2639:2642
No text annotation
Not in a motif group
IL_5NGM_0741/AA/2094:2096,
1/AA/2469:2470
Single bulged U
Not in a motif group
homologous
IL_7RQB_080
IL_83039.16
IL_5NGM_0751/AA/2097:2098,
1/AA/2465:2468
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.3
IL_5NGM_0761/AA/2108:2110,
1/AA/2263:2266
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7A0S_077
IL_38958.7
IL_5NGM_0771/AA/2123:2125,
1/AA/2218:2220
No text annotation
Not in a motif group
geometric
IL_4P3T_006
IL_86319.2
IL_5NGM_0781/AA/2156:2169,
1/AA/2176:2186
No text annotation
Not in a motif group
IL_5NGM_0791/AA/2229:2231,
1/AA/2247:2248
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.16
IL_5NGM_0801/AA/2324:2326,
1/AA/2344:2348
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_088
IL_38958.7
IL_5NGM_0811/AA/2377:2380,
1/AA/2391:2394
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.10
IL_5NGM_0821/AA/2428:2430,
1/AA/2441:2442
Single bulged U
Not in a motif group
homologous
IL_5J7L_334
IL_83039.16
IL_5NGM_0831/AA/2480:2481,
1/AA/2525:2527
Single stack bend
Not in a motif group
geometric
IL_4WF9_089
IL_76488.3
IL_5NGM_0841/AA/2481:2482,
1/AA/2523:2525
Major groove platform
Not in a motif group
homologous
IL_4WF9_090
IL_27635.3
IL_5NGM_0851/AA/2484:2486,
1/AA/2520:2521
Major groove platform
Not in a motif group
geometric
IL_4WF9_091
IL_27635.3
IL_5NGM_0861/AA/2486:2488,
1/AA/2516:2520
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_094
IL_92788.2
IL_5NGM_0871/AA/2493:2497,
1/AA/2507:2511
Triple sheared
Not in a motif group
homologous
IL_4WF9_093
IL_56467.8
IL_5NGM_0881/AA/2534:2535,
1/AA/2607:2609
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_5NGM_0891/AA/2537:2539,
1/AA/2601:2605
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_4WF9_095
IL_90933.2
IL_5NGM_0901/AA/2539:2540,
1/AA/2598:2601
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_5NGM_0911/AA/2549:2550,
1/AA/2567:2570
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_5NGM_0921/AA/2618:2619,
1/AA/2628:2630
Single bulged A
Not in a motif group
geometric
IL_4V9F_090
IL_37497.5
IL_5NGM_0931/AA/2663:2667,
1/AA/2801:2809
tSH-tHS-tHW
Not in a motif group
homologous
IL_4WF9_099
IL_04638.1
IL_5NGM_0941/AA/2679:2685,
1/AA/2690:2695
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_7RQB_103
IL_16458.1
IL_5NGM_0951/AA/2707:2711,
1/AA/2752:2754
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_5NGM_0961/AA/2714:2718,
1/AA/2745:2749
No text annotation
Not in a motif group
homologous
IL_7RQB_105
IL_08296.3
IL_5NGM_0971/AA/2722:2723,
1/AA/2738:2741
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_5NGM_0981/AA/2764:2769,
1/AA/2789:2794
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_5NGM_0991/AA/2858:2859,
1/AA/2898:2900
Major groove intercalation
Not in a motif group
homologous
IL_4WF9_106
IL_16396.2
IL_5NGM_1001/AA/2863:2865,
1/AA/2891:2894
No text annotation
Not in a motif group
homologous
IL_4WF9_107
IL_02284.7
IL_5NGM_1011/AA/2867:2872,
1/AA/2885:2889
No text annotation
Not in a motif group
homologous
IL_4WF9_108
IL_83162.5
IL_5NGM_1021/AB/15:16,
1/AB/63:65
Major groove intercalation
Not in a motif group
homologous
IL_4WF9_112
IL_37497.5
IL_5NGM_1031/AB/21:27,
1/AB/53:58
No text annotation
Not in a motif group
IL_5NGM_1041/AB/28:29,
1/AB/49:52
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_7RQB_113
IL_09061.7
IL_5NGM_1051/AB/32:36,
1/AB/42:46
Symmetric double minor groove platform
Not in a motif group
geometric
IL_7RQB_114
IL_58103.6
IL_5NGM_1061/AB/69:77,
1/AB/94:102
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7A0S_106
IL_56455.3
IL_5NGM_1071/AB/78:80,
1/AB/91:93
No text annotation
Not in a motif group
homologous
IL_7A0S_107
IL_70707.1
IL_5NGM_1081/Aa/31:33,
1/Aa/560:561
Single bulged G
Not in a motif group
homologous
IL_6CZR_113
IL_00225.3
IL_5NGM_1091/Aa/45:46,
1/Aa/404:406
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.5
IL_5NGM_1101/Aa/48:53,
1/Aa/367:369
No text annotation
Not in a motif group
homologous
IL_5J7L_003
IL_14177.1
IL_5NGM_1111/Aa/54:57,
1/Aa/364:366
No text annotation
Not in a motif group
IL_5NGM_1121/Aa/64:67,
1/Aa/102:103
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_5NGM_1131/Aa/68:71,
1/Aa/98:101
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5LQO_002
IL_30621.3
IL_5NGM_1141/Aa/128:131,
1/Aa/239:240
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_5NGM_1151/Aa/132:136,
1/Aa/235:238
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_5NGM_1161/Aa/147:153,
1/Aa/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_5NGM_1171/Aa/187:190,
1/Aa/201:203
No text annotation
Not in a motif group
geometric
IL_4WSM_372
IL_17806.1
IL_5NGM_1181/Aa/250:255,
1/Aa/285:292
No text annotation
Not in a motif group
IL_5NGM_1191/Aa/256:261,
1/Aa/281:284
No text annotation
Not in a motif group
IL_5NGM_1201/Aa/300:301,
1/Aa/312:316
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_5NGM_1211/Aa/375:377,
1/Aa/400:401
Single bulged U
Not in a motif group
homologous
IL_4LFB_014
IL_83039.16
IL_5NGM_1221/Aa/379:383,
1/Aa/397:398
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_5NGM_1231/Aa/383:384,
1/Aa/395:397
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.3
IL_5NGM_1241/Aa/417:427,
1/Aa/432:441
No text annotation
Not in a motif group
IL_5NGM_1251/Aa/454:458,
1/Aa/491:496
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4LFB_018
IL_88269.3
IL_5NGM_1261/Aa/512:519,
1/Aa/548:549
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_6CZR_132
IL_15861.7
IL_5NGM_1271/Aa/523:529,
1/Aa/536:544
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_5NGM_1281/Aa/577:583,
1/Aa/889:890
No text annotation
Not in a motif group
homologous
IL_5J7L_026
IL_69996.1
IL_5NGM_1291/Aa/588:592,
1/Aa/765:769
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_5NGM_1301/Aa/598:600,
1/Aa/655:657
No text annotation
Not in a motif group
geometric
IL_4WF9_042
IL_70707.1
IL_5NGM_1311/Aa/602:604,
1/Aa/652:653
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.3
IL_5NGM_1321/Aa/605:606,
1/Aa/648:651
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.7
IL_5NGM_1331/Aa/612:620,
1/Aa/636:642
No text annotation
Not in a motif group
IL_5NGM_1341/Aa/662:663,
1/Aa/759:762
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_5NGM_1351/Aa/665:666,
1/Aa/755:757
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.3
IL_5NGM_1361/Aa/669:674,
1/Aa/748:752
No text annotation
Not in a motif group
IL_5NGM_1371/Aa/681:686,
1/Aa/720:725
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.2
IL_5NGM_1381/Aa/692:696,
1/Aa/707:714
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_5NGM_1391/Aa/782:787,
1/Aa/811:813
Other IL
Not in a motif group
geometric
IL_4V88_435
IL_22046.1
IL_5NGM_1401/Aa/787:791,
1/Aa/807:811
tSH-tHW-tHS
Not in a motif group
geometric
IL_4LFB_033
IL_17136.1
IL_5NGM_1411/Aa/896:903,
1/Aa/914:919
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_5NGM_1421/Aa/931:932,
1/Aa/1403:1405
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.5
IL_5NGM_1431/Aa/934:936,
1/Aa/1400:1401
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.3
IL_5NGM_1441/Aa/942:944,
1/Aa/1390:1394
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_5NGM_1451/Aa/962:963,
1/Aa/1236:1238
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_5NGM_1461/Aa/1002:1006,
1/Aa/1055:1056
Minor groove platform
Not in a motif group
geometric
IL_4LFB_039
IL_47078.1
IL_5NGM_1471/Aa/1006:1010,
1/Aa/1050:1055
No text annotation
Not in a motif group
IL_5NGM_1481/Aa/1059:1061,
1/Aa/1218:1219
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.16
IL_5NGM_1491/Aa/1062:1067,
1/Aa/1214:1217
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_473
IL_30621.3
IL_5NGM_1501/Aa/1068:1069,
1/Aa/1209:1213
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_88739.2
IL_5NGM_1511/Aa/1071:1072,
1/Aa/1205:1207
Single bulged U
Not in a motif group
homologous
IL_4LFB_046
IL_83039.16
IL_5NGM_1521/Aa/1072:1074,
1/Aa/1203:1205
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_86319.2
IL_5NGM_1531/Aa/1257:1263,
1/Aa/1294:1300
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_5NGM_1541/Aa/1265:1268,
1/Aa/1287:1292
No text annotation
Not in a motif group
IL_5NGM_1551/Aa/1269:1274,
1/Aa/1281:1286
tSH-tHW-tHS-cWW
Not in a motif group
geometric
IL_1L9A_008
IL_76308.4
IL_5NGM_1561/Aa/1313:1318,
1/Aa/1339:1344
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_5NGM_1571/Aa/1409:1411,
1/Aa/1512:1515
No text annotation
Not in a motif group
homologous
IL_4LFB_056
NA
IL_5NGM_1581/Aa/1411:1414,
1/Aa/1508:1512
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_5NGM_1591/Aa/1415:1417,
1/Aa/1505:1507
No text annotation
Not in a motif group
geometric
IL_5TBW_110
IL_86319.2
IL_5NGM_1601/Aa/1417:1419,
1/Aa/1502:1505
No text annotation
Not in a motif group
geometric
IL_4V9F_072
IL_63450.2
IL_5NGM_1611/Aa/1422:1424,
1/Aa/1497:1499
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_86319.2
IL_5NGM_1621/Aa/1426:1429,
1/Aa/1492:1495
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.10
IL_5NGM_1631/Aa/1434:1437,
1/Aa/1484:1487
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5LQO_002
IL_30621.3
IL_5NGM_1641/Aa/1440:1445,
1/Aa/1477:1481
Triple sheared related
Not in a motif group
geometric
IL_5J7L_063
IL_64879.2
IL_5NGM_1651/Aa/1445:1447,
1/Aa/1475:1477
No text annotation
Not in a motif group
homologous
IL_4LFB_063
IL_86319.2
IL_5NGM_1661/Aa/1450:1453,
1/Aa/1470:1472
No text annotation
Not in a motif group
IL_5NGM_1671/Aa/1455:1458,
1/Aa/1466:1468
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.7

Problematic loops

#loop idProblemSequence
IL_5NGM_011No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5NGM_0011/AA/30:31,
1/AA/520:527,
1/AA/554:555
No text annotation
Not in a motif group
homologous