7RR5 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7RR5_001 | 1/A/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_7RR5_002 | 1/A/31:39 | tRNA anticodon loop | homologous HL_5IBB_210 HL_06059.5 | |
| HL_7RR5_003 | 1/A/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6JXM_003 HL_28252.6 | |
| HL_7RR5_004 | 1/C1/38:45 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_7RR5_005 | 1/C1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7RR5_006 | 1/C1/90:96 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7RR5_007 | 1/C1/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_7RR5_008 | 1/C1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7RR5_009 | 1/C1/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_7RR5_010 | 1/C1/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7RR5_011 | 1/C1/278:287 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_7RR5_012 | 1/C1/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7RR5_013 | 1/C1/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7RR5_014 | 1/C1/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7RR5_015 | 1/C1/543:548 | No text annotation | homologous HL_5TBW_012 NA | |
| HL_7RR5_016 | 1/C1/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_7RR5_017 | 1/C1/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7RR5_121 | 1/C1/687:693 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_7RR5_019 | 1/C1/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7RR5_020 | 1/C1/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_7RR5_021 | 1/C1/763:768 | No text annotation | homologous HL_8C3A_018 NA | |
| HL_7RR5_022 | 1/C1/844:849 | GNRA | homologous HL_5TBW_019 NA | |
| HL_7RR5_023 | 1/C1/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7RR5_024 | 1/C1/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_7RR5_025 | 1/C1/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7RR5_026 | 1/C1/1023:1029 | GNRA | homologous HL_5TBW_023 NA | |
| HL_7RR5_027 | 1/C1/1076:1083 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_7RR5_028 | 1/C1/1126:1132 | GNRA | homologous HL_5TBW_025 NA | |
| HL_7RR5_029 | 1/C1/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_7RR5_030 | 1/C1/1239:1249 | No text annotation | homologous HL_5TBW_027 NA | |
| HL_7RR5_031 | 1/C1/1267:1274 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_7RR5_032 | 1/C1/1347:1357 | No text annotation | homologous HL_5TBW_029 NA | |
| HL_7RR5_033 | 1/C1/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7RR5_034 | 1/C1/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7RR5_035 | 1/C1/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7RR5_036 | 1/C1/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7RR5_037 | 1/C1/1566:1572 | No text annotation | ||
| HL_7RR5_038 | 1/C1/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_7RR5_039 | 1/C1/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7RR5_040 | 1/C1/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7RR5_041 | 1/C1/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_7RR5_042 | 1/C1/1759:1766 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_7RR5_043 | 1/C1/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7RR5_044 | 1/C1/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_7RR5_045 | 1/C1/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_7RR5_046 | 1/C1/1923:1928 | UNCG | homologous HL_8C3A_043 NA | |
| HL_7RR5_048 | 1/C1/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_7RR5_049 | 1/C1/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7RR5_050 | 1/C1/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7RR5_051 | 1/C1/2220:2225 | GNRA | homologous HL_8C3A_048 NA | |
| HL_7RR5_052 | 1/C1/2253:2263 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_7RR5_053 | 1/C1/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7RR5_054 | 1/C1/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7RR5_055 | 1/C1/2469:2476 | No text annotation | ||
| HL_7RR5_056 | 1/C1/2535:2544 | No text annotation | ||
| HL_7RR5_057 | 1/C1/2568:2573 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7RR5_058 | 1/C1/2616:2624 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_7RR5_059 | 1/C1/2633:2645 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_7RR5_060 | 1/C1/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7RR5_061 | 1/C1/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7RR5_062 | 1/C1/2724:2732 | No text annotation | homologous HL_5TBW_058 NA | |
| HL_7RR5_063 | 1/C1/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7RR5_064 | 1/C1/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_7RR5_065 | 1/C1/2840:2848 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_7RR5_066 | 1/C1/2897:2904 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_7RR5_067 | 1/C1/2920:2926 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_7RR5_068 | 1/C1/2963:2968 | GNRA | homologous HL_5TBW_064 NA | |
| HL_7RR5_069 | 1/C1/3025:3030 | GNRA | homologous HL_5TBW_065 NA | |
| HL_7RR5_070 | 1/C1/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7RR5_071 | 1/C1/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7RR5_072 | 1/C1/3194:3197 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_7RR5_073 | 1/C1/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_7RR5_074 | 1/C1/3303:3311 | No text annotation | homologous HL_5TBW_070 NA | |
| HL_7RR5_075 | 1/C1/3350:3353 | Mini UNCG | homologous HL_5TBW_071 NA | |
| HL_7RR5_076 | 1/C2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_7RR5_077 | 1/C2/70:81 | No text annotation | ||
| HL_7RR5_078 | 1/C2/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_7RR5_079 | 1/C2/190:195 | No text annotation | ||
| HL_7RR5_080 | 1/C2/228:237 | No text annotation | ||
| HL_7RR5_081 | 1/C2/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_7RR5_082 | 1/C2/276:279 | No text annotation | ||
| HL_7RR5_083 | 1/C2/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_7RR5_084 | 1/C2/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_7RR5_085 | 1/C2/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_7RR5_086 | 1/C2/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_7RR5_087 | 1/C2/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_7RR5_088 | 1/C2/491:496 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7RR5_089 | 1/C2/520:532 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7RR5_090 | 1/C2/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_7RR5_093 | 1/C2/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_7RR5_094 | 1/C2/777:783 | No text annotation | homologous HL_8P9A_207 HL_48417.5 | |
| HL_7RR5_095 | 1/C2/829:843 | Pseudoknot geometry | homologous HL_4V88_205 NA | |
| HL_7RR5_096 | 1/C2/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_7RR5_097 | 1/C2/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_7RR5_098 | 1/C2/997:1007 | No text annotation | homologous HL_4V88_208 NA | |
| HL_7RR5_099 | 1/C2/1055:1064 | No text annotation | ||
| HL_7RR5_100 | 1/C2/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_7RR5_101 | 1/C2/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_7RR5_102 | 1/C2/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_7RR5_103 | 1/C2/1238:1247 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_7RR5_104 | 1/C2/1296:1301 | GNRA | homologous HL_4V88_214 NA | |
| HL_7RR5_105 | 1/C2/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_7RR5_106 | 1/C2/1359:1364 | No text annotation | homologous HL_4V88_216 NA | |
| HL_7RR5_107 | 1/C2/1396:1402 | GNRA | homologous HL_4V88_217 NA | |
| HL_7RR5_108 | 1/C2/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_7RR5_109 | 1/C2/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_7RR5_110 | 1/C2/1594:1602 | No text annotation | homologous HL_4V88_220 NA | |
| HL_7RR5_112 | 1/C2/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_7RR5_122 | 1/C3/47:56 | No text annotation | homologous HL_8P9A_186 HL_93438.2 | |
| HL_7RR5_113 | 1/C3/69:89 | No text annotation | homologous HL_8P4V_073 NA | |
| HL_7RR5_114 | 1/C3/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_7RR5_115 | 1/C3/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_7RR5_116 | 1/C4/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_7RR5_117 | 1/C4/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7RR5_118 | 1/P/12:23 | No text annotation | homologous HL_1SER_001 HL_40252.3 | |
| HL_7RR5_119 | 1/P/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_06059.5 | |
| HL_7RR5_120 | 1/P/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1QTQ_003 HL_28252.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7RR5_018 | No text annotation | ||
| HL_7RR5_047 | No text annotation | ||
| HL_7RR5_091 | No text annotation | ||
| HL_7RR5_092 | No text annotation | ||
| HL_7RR5_111 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7RR5_002 | 1/C1/7:8, 1/C3/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_7RR5_003 | 1/C1/12:15, 1/C3/144:146 | Isolated non-canonical cWW pair | geometric IL_4WF9_083 IL_87907.2 | |
| IL_7RR5_004 | 1/C1/27:28, 1/C1/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7RR5_005 | 1/C1/31:38, 1/C1/45:53 | tSH-tHW-tHH-tHS | homologous IL_5TBW_005 NA | |
| IL_7RR5_006 | 1/C1/82:89, 1/C1/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_7RR5_007 | 1/C1/123:124, 1/C1/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_7RR5_008 | 1/C1/125:127, 1/C1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_7RR5_009 | 1/C1/163:165, 1/C1/257:258 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_7RR5_010 | 1/C1/169:170, 1/C1/248:253 | No text annotation | homologous IL_5TBW_010 NA | |
| IL_7RR5_011 | 1/C1/177:178, 1/C1/238:241 | Major groove platform | geometric IL_5J7L_320 IL_48076.6 | |
| IL_7RR5_012 | 1/C1/189:191, 1/C1/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7RR5_013 | 1/C1/337:339, 1/C3/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_7RR5_014 | 1/C1/376:379, 1/C1/390:403 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_7RR5_015 | 1/C1/404:410, 1/C3/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_7RR5_016 | 1/C1/429:431, 1/C1/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_7RR5_018 | 1/C1/512:513, 1/C1/577:579 | Single bulged A | homologous IL_5TBW_018 NA | |
| IL_7RR5_019 | 1/C1/517:525, 1/C1/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_7RR5_020 | 1/C1/531:538, 1/C1/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_7RR5_021 | 1/C1/668:670, 1/C1/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_7RR5_022 | 1/C1/680:684, 1/C1/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_7RR5_023 | 1/C1/725:728, 1/C1/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_7RR5_024 | 1/C1/752:753, 1/C1/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_7RR5_025 | 1/C1/755:756, 1/C1/775:777 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_7RR5_026 | 1/C1/758:763, 1/C1/768:773 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_7RR5_027 | 1/C1/803:805, 1/C1/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_7RR5_028 | 1/C1/805:809, 1/C1/931:938 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_7RR5_029 | 1/C1/833:834, 1/C1/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_7RR5_030 | 1/C1/834:838, 1/C1/855:859 | Triple sheared | geometric IL_5J7L_263 IL_50730.2 | |
| IL_7RR5_031 | 1/C1/869:872, 1/C1/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7RR5_032 | 1/C1/873:875, 1/C1/886:887 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_7RR5_033 | 1/C1/907:909, 1/C1/919:923 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_7RR5_034 | 1/C1/954:956, 1/C1/965:967 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7RR5_035 | 1/C1/969:970, 1/C1/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_7RR5_036 | 1/C1/977:982, 1/C1/1101:1104 | No text annotation | ||
| IL_7RR5_037 | 1/C1/983:985, 1/C1/1099:1100 | Single bulged G | homologous IL_5TBW_037 NA | |
| IL_7RR5_038 | 1/C1/991:997, 1/C1/1052:1058 | No text annotation | homologous IL_8C3A_041 NA | |
| IL_7RR5_039 | 1/C1/997:998, 1/C1/1050:1052 | Minor groove platform | geometric IL_6DLR_003 IL_51454.2 | |
| IL_7RR5_040 | 1/C1/999:1004, 1/C1/1046:1049 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_7RR5_041 | 1/C1/1006:1009, 1/C1/1041:1044 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_7RR5_042 | 1/C1/1009:1011, 1/C1/1039:1041 | Isolated non-canonical cWW pair | homologous IL_5TBW_042 NA | |
| IL_7RR5_043 | 1/C1/1013:1018, 1/C1/1034:1037 | Other IL | homologous IL_5TBW_043 NA | |
| IL_7RR5_044 | 1/C1/1069:1071, 1/C1/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_7RR5_045 | 1/C1/1074:1076, 1/C1/1083:1084 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_7RR5_046 | 1/C1/1120:1122, 1/C1/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_7RR5_047 | 1/C1/1167:1171, 1/C1/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7RR5_048 | 1/C1/1173:1180, 1/C1/1325:1326 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
| IL_7RR5_049 | 1/C1/1180:1182, 1/C1/1324:1325 | Single bulged U | homologous IL_5TBW_050 NA | |
| IL_7RR5_050 | 1/C1/1187:1194, 1/C1/1314:1319 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_7RR5_051 | 1/C1/1194:1205, 1/C1/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7RR5_052 | 1/C1/1207:1209, 1/C1/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7RR5_053 | 1/C1/1218:1226, 1/C1/1283:1287 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_7RR5_238 | 1/C1/1234:1238, 1/C1/1250:1254 | No text annotation | homologous IL_8P9A_283 IL_16218.2 | |
| IL_7RR5_055 | 1/C1/1262:1266, 1/C1/1275:1277 | Major groove platform with extra cWW | homologous IL_8C3A_059 NA | |
| IL_7RR5_056 | 1/C1/1376:1378, 1/C1/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7RR5_057 | 1/C1/1385:1387, 1/C1/1420:1421 | Single bulged A | homologous IL_5TBW_058 NA | |
| IL_7RR5_058 | 1/C1/1388:1395, 1/C1/1415:1419 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_7RR5_059 | 1/C1/1398:1400, 1/C1/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_7RR5_060 | 1/C1/1444:1450, 1/C1/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_7RR5_239 | 1/C1/1501:1505, 1/C1/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.11 | |
| IL_7RR5_062 | 1/C1/1532:1536, 1/C1/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7RR5_063 | 1/C1/1563:1566, 1/C1/1572:1576 | No text annotation | ||
| IL_7RR5_064 | 1/C1/1618:1621, 1/C1/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_7RR5_065 | 1/C1/1623:1627, 1/C1/1816:1822 | No text annotation | ||
| IL_7RR5_240 | 1/C1/1623:1631, 1/C1/1811:1822 | No text annotation | ||
| IL_7RR5_066 | 1/C1/1627:1631, 1/C1/1811:1816 | No text annotation | geometric IL_5TBW_066 NA | |
| IL_7RR5_067 | 1/C1/1645:1649, 1/C1/1806:1810 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_7RR5_068 | 1/C1/1661:1663, 1/C1/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_7RR5_069 | 1/C1/1669:1670, 1/C1/1778:1780 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_7RR5_070 | 1/C1/1670:1671, 1/C1/1776:1778 | Single stack bend | homologous IL_5TBW_070 NA | |
| IL_7RR5_071 | 1/C1/1694:1698, 1/C1/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_7RR5_072 | 1/C1/1702:1707, 1/C1/1737:1743 | No text annotation | homologous IL_5TBW_072 NA | |
| IL_7RR5_073 | 1/C1/1711:1717, 1/C1/1727:1733 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_7RR5_074 | 1/C1/1883:1889, 1/C1/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_7RR5_075 | 1/C1/1895:1897, 1/C1/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7RR5_076 | 1/C1/1898:1901, 1/C1/2336:2337 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_7RR5_241 | 1/C1/1898:1906, 1/C1/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_7RR5_077 | 1/C1/1901:1906, 1/C1/2333:2336 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_7RR5_078 | 1/C1/1918:1923, 1/C1/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_7RR5_079 | 1/C1/1940:1942, 1/C1/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7RR5_080 | 1/C1/1947:1948, 1/C1/2098:2101 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7RR5_081 | 1/C1/2128:2129, 1/C1/2323:2325 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7RR5_082 | 1/C1/2156:2161, 1/C1/2173:2180 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_7RR5_083 | 1/C1/2196:2199, 1/C1/2245:2246 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_7RR5_084 | 1/C1/2200:2201, 1/C1/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_7RR5_085 | 1/C1/2204:2206, 1/C1/2237:2238 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_7RR5_086 | 1/C1/2206:2210, 1/C1/2235:2237 | No text annotation | homologous IL_8C3A_092 NA | |
| IL_7RR5_087 | 1/C1/2211:2217, 1/C1/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_7RR5_088 | 1/C1/2276:2277, 1/C1/2307:2310 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_7RR5_089 | 1/C1/2277:2288, 1/C1/2304:2307 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_7RR5_090 | 1/C1/2391:2394, 1/C1/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_7RR5_091 | 1/C1/2396:2398, 1/C1/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_7RR5_092 | 1/C1/2409:2411, 1/C1/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_7RR5_093 | 1/C1/2412:2413, 1/C1/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_7RR5_094 | 1/C1/2423:2425, 1/C1/2604:2607 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_7RR5_095 | 1/C1/2444:2445, 1/C1/2501:2503 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_7RR5_096 | 1/C1/2451:2462, 1/C1/2493:2495 | No text annotation | ||
| IL_7RR5_097 | 1/C1/2466:2469, 1/C1/2476:2489 | No text annotation | ||
| IL_7RR5_098 | 1/C1/2520:2526, 1/C1/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7RR5_099 | 1/C1/2614:2615, 1/C1/2625:2627 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_7RR5_100 | 1/C1/2666:2668, 1/C1/2686:2690 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_7RR5_101 | 1/C1/2718:2721, 1/C1/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_7RR5_102 | 1/C1/2770:2773, 1/C1/2787:2788 | Single stack bend with bulge | homologous IL_8C3A_110 NA | |
| IL_7RR5_103 | 1/C1/2823:2824, 1/C1/2865:2867 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_7RR5_243 | 1/C1/2823:2826, 1/C1/2863:2867 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_7RR5_104 | 1/C1/2824:2826, 1/C1/2863:2865 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_7RR5_105 | 1/C1/2826:2828, 1/C1/2862:2863 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_7RR5_106 | 1/C1/2828:2830, 1/C1/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_7RR5_107 | 1/C1/2835:2839, 1/C1/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_7RR5_108 | 1/C1/2876:2877, 1/C1/2949:2951 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_7RR5_109 | 1/C1/2879:2881, 1/C1/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_7RR5_110 | 1/C1/2881:2882, 1/C1/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_7RR5_111 | 1/C1/2889:2891, 1/C1/2912:2914 | No text annotation | geometric IL_4KR9_001 NA | |
| IL_7RR5_244 | 1/C1/2889:2892, 1/C1/2909:2914 | No text annotation | homologous IL_8P9A_338 IL_07469.2 | |
| IL_7RR5_112 | 1/C1/2891:2892, 1/C1/2909:2912 | Major groove platform with intercalation | geometric IL_5TBW_111 NA | |
| IL_7RR5_113 | 1/C1/2918:2920, 1/C1/2926:2928 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_7RR5_114 | 1/C1/2960:2961, 1/C1/2970:2972 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_7RR5_115 | 1/C1/3004:3007, 1/C1/3139:3144 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_7RR5_116 | 1/C1/3012:3014, 1/C1/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_7RR5_117 | 1/C1/3018:3025, 1/C1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_7RR5_118 | 1/C1/3047:3051, 1/C1/3091:3094 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_7RR5_119 | 1/C1/3054:3059, 1/C1/3084:3088 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_7RR5_120 | 1/C1/3063:3064, 1/C1/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7RR5_121 | 1/C1/3103:3107, 1/C1/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_7RR5_122 | 1/C1/3164:3166, 1/C1/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_7RR5_123 | 1/C1/3168:3170, 1/C1/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_7RR5_124 | 1/C1/3177:3179, 1/C1/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_7RR5_125 | 1/C1/3179:3188, 1/C1/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_7RR5_126 | 1/C1/3193:3194, 1/C1/3197:3199 | Single bulged U | homologous IL_5TBW_125 NA | |
| IL_7RR5_127 | 1/C1/3225:3229, 1/C1/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_7RR5_128 | 1/C1/3233:3235, 1/C1/3252:3254 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_7RR5_129 | 1/C1/3235:3238, 1/C1/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_5TBW_128 NA | |
| IL_7RR5_130 | 1/C1/3300:3303, 1/C1/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_7RR5_131 | 1/C1/3318:3320, 1/C1/3387:3388 | Single bulged U | geometric IL_5TBW_130 NA | |
| IL_7RR5_132 | 1/C1/3324:3325, 1/C1/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_7RR5_133 | 1/C1/3328:3330, 1/C1/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7RR5_134 | 1/C1/3332:3337, 1/C1/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_7RR5_135 | 1/C1/3340:3342, 1/C1/3363:3364 | Single bulged U | geometric IL_5TBW_134 NA | |
| IL_7RR5_136 | 1/C1/3342:3345, 1/C1/3360:3363 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_7RR5_137 | 1/C1/3349:3350, 1/C1/3353:3356 | Multiple bulged bases | geometric IL_5TBW_136 NA | |
| IL_7RR5_138 | 1/C2/24:26, 1/C2/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_7RR5_139 | 1/C2/35:37, 1/C2/471:473 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_7RR5_140 | 1/C2/37:41, 1/C2/466:471 | Triple sheared related | homologous IL_4V88_386 NA | |
| IL_7RR5_141 | 1/C2/42:48, 1/C2/431:433 | No text annotation | homologous IL_4V88_387 NA | |
| IL_7RR5_142 | 1/C2/50:52, 1/C2/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_7RR5_143 | 1/C2/58:63, 1/C2/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_7RR5_144 | 1/C2/64:69, 1/C2/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_7RR5_145 | 1/C2/109:112, 1/C2/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_7RR5_146 | 1/C2/113:116, 1/C2/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_7RR5_147 | 1/C2/117:122, 1/C2/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_7RR5_148 | 1/C2/144:149, 1/C2/165:171 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_12745.1 | |
| IL_7RR5_149 | 1/C2/150:152, 1/C2/162:164 | Isolated cWH basepair | geometric IL_6RA4_002 IL_10167.5 | |
| IL_7RR5_150 | 1/C2/186:189, 1/C2/196:199 | Double sheared | homologous IL_4V88_396 NA | |
| IL_7RR5_151 | 1/C2/204:206, 1/C2/259:263 | Major groove platform with extra cWW | homologous IL_4V88_397 NA | |
| IL_7RR5_152 | 1/C2/206:208, 1/C2/257:259 | Isolated non-canonical cWW pair | geometric IL_2O3V_004 IL_28037.2 | |
| IL_7RR5_153 | 1/C2/265:267, 1/C2/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_7RR5_154 | 1/C2/270:273, 1/C2/283:285 | No text annotation | homologous IL_4V88_400 NA | |
| IL_7RR5_155 | 1/C2/275:276, 1/C2/279:281 | No text annotation | ||
| IL_7RR5_156 | 1/C2/311:316, 1/C2/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_7RR5_157 | 1/C2/318:323, 1/C2/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_7RR5_158 | 1/C2/363:365, 1/C2/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_7RR5_159 | 1/C2/389:391, 1/C2/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_7RR5_160 | 1/C2/411:413, 1/C2/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_7RR5_161 | 1/C2/439:441, 1/C2/463:464 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_7RR5_162 | 1/C2/443:447, 1/C2/460:461 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_7RR5_163 | 1/C2/447:448, 1/C2/458:460 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_7RR5_164 | 1/C2/481:482, 1/C2/505:507 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_7RR5_165 | 1/C2/517:518, 1/C2/533:535 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_7RR5_166 | 1/C2/518:520, 1/C2/532:533 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_7RR5_167 | 1/C2/550:557, 1/C2/587:588 | SSU/LSU pseudoknot | homologous IL_4V88_413 NA | |
| IL_7RR5_168 | 1/C2/557:559, 1/C2/586:587 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_7RR5_169 | 1/C2/562:568, 1/C2/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_7RR5_170 | 1/C2/616:622, 1/C2/1104:1105 | No text annotation | homologous IL_4V88_416 NA | |
| IL_7RR5_171 | 1/C2/624:626, 1/C2/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_7RR5_172 | 1/C2/627:631, 1/C2/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_7RR5_173 | 1/C2/646:648, 1/C2/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_7RR5_174 | 1/C2/746:747, 1/C2/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_7RR5_175 | 1/C2/748:750, 1/C2/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_7RR5_176 | 1/C2/751:760, 1/C2/790:798 | No text annotation | ||
| IL_7RR5_177 | 1/C2/817:824, 1/C2/848:854 | No text annotation | ||
| IL_7RR5_178 | 1/C2/865:866, 1/C2/962:965 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_50694.7 | |
| IL_7RR5_247 | 1/C2/868:869, 1/C2/958:960 | Single bulged U | geometric IL_3NDB_005 IL_89505.4 | |
| IL_7RR5_248 | 1/C2/871:873, 1/C2/954:956 | Isolated non-canonical cWW pair | geometric IL_8D29_001 IL_87907.2 | |
| IL_7RR5_181 | 1/C2/874:878, 1/C2/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_7RR5_182 | 1/C2/885:888, 1/C2/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_7RR5_183 | 1/C2/893:895, 1/C2/917:919 | Isolated non-canonical cWW pair | homologous IL_4V88_433 NA | |
| IL_7RR5_249 | 1/C2/893:899, 1/C2/910:919 | No text annotation | homologous IL_8P9A_422 IL_57741.1 | |
| IL_7RR5_184 | 1/C2/895:899, 1/C2/910:917 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_7RR5_185 | 1/C2/985:990, 1/C2/1014:1016 | Other IL | geometric IL_4V88_435 NA | |
| IL_7RR5_186 | 1/C2/990:994, 1/C2/1010:1014 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_7RR5_187 | 1/C2/1034:1036, 1/C2/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_7RR5_188 | 1/C2/1041:1044, 1/C2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_7RR5_189 | 1/C2/1051:1053, 1/C2/1066:1067 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_7RR5_190 | 1/C2/1111:1118, 1/C2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_7RR5_191 | 1/C2/1146:1147, 1/C2/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_7RR5_192 | 1/C2/1149:1151, 1/C2/1627:1628 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_7RR5_193 | 1/C2/1157:1160, 1/C2/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_7RR5_194 | 1/C2/1173:1175, 1/C2/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_7RR5_195 | 1/C2/1178:1179, 1/C2/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_7RR5_196 | 1/C2/1213:1215, 1/C2/1448:1450 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_87907.2 | |
| IL_7RR5_197 | 1/C2/1224:1230, 1/C2/1257:1259 | No text annotation | ||
| IL_7RR5_251 | 1/C2/1224:1233, 1/C2/1252:1259 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_7RR5_198 | 1/C2/1230:1233, 1/C2/1252:1257 | No text annotation | ||
| IL_7RR5_199 | 1/C2/1234:1236, 1/C2/1249:1251 | No text annotation | homologous IL_4V88_448 NA | |
| IL_7RR5_200 | 1/C2/1268:1270, 1/C2/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_7RR5_201 | 1/C2/1272:1278, 1/C2/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_7RR5_202 | 1/C2/1280:1281, 1/C2/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_7RR5_203 | 1/C2/1290:1292, 1/C2/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_7RR5_204 | 1/C2/1306:1308, 1/C2/1317:1318 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_7RR5_205 | 1/C2/1339:1342, 1/C2/1383:1385 | Isolated non-canonical cWW pair | homologous IL_4V88_455 NA | |
| IL_7RR5_206 | 1/C2/1345:1348, 1/C2/1377:1380 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_7RR5_207 | 1/C2/1352:1354, 1/C2/1369:1373 | Isolated non-canonical cWW pair | homologous IL_4V88_457 NA | |
| IL_7RR5_208 | 1/C2/1389:1391, 1/C2/1407:1412 | Major groove platform; stack outside cWW | homologous IL_4V88_458 NA | |
| IL_7RR5_209 | 1/C2/1480:1487, 1/C2/1519:1527 | No text annotation | homologous IL_4V88_459 NA | |
| IL_7RR5_210 | 1/C2/1488:1494, 1/C2/1513:1518 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_7RR5_211 | 1/C2/1495:1498, 1/C2/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_7RR5_212 | 1/C2/1540:1545, 1/C2/1566:1571 | No text annotation | geometric IL_4V88_462 NA | |
| IL_7RR5_213 | 1/C2/1636:1638, 1/C2/1764:1767 | No text annotation | homologous IL_4V88_463 NA | |
| IL_7RR5_214 | 1/C2/1638:1641, 1/C2/1760:1764 | No text annotation | geometric IL_4V88_464 NA | |
| IL_7RR5_215 | 1/C2/1642:1644, 1/C2/1757:1759 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_87907.2 | |
| IL_7RR5_216 | 1/C2/1644:1647, 1/C2/1753:1757 | No text annotation | homologous IL_8CRE_469 IL_11399.2 | |
| IL_7RR5_217 | 1/C2/1650:1652, 1/C2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_7RR5_218 | 1/C2/1653:1656, 1/C2/1744:1747 | Double sheared | homologous IL_4V88_468 NA | |
| IL_7RR5_219 | 1/C2/1656:1658, 1/C2/1743:1744 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_7RR5_220 | 1/C2/1665:1667, 1/C2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_7RR5_221 | 1/C2/1669:1672, 1/C2/1729:1732 | Double sheared | geometric IL_4V88_471 NA | |
| IL_7RR5_222 | 1/C2/1672:1674, 1/C2/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
| IL_7RR5_223 | 1/C2/1675:1678, 1/C2/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_7RR5_224 | 1/C2/1678:1682, 1/C2/1719:1723 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_7RR5_252 | 1/C2/1688:1690, 1/C2/1711:1713 | Isolated tWW contact | homologous IL_8P9A_464 IL_10167.5 | |
| IL_7RR5_226 | 1/C3/44:64, 1/C3/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_7RR5_227 | 1/C3/64:66, 1/C3/93:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_7RR5_228 | 1/C3/68:69, 1/C3/89:91 | Single bulged U | homologous IL_5TBW_146 NA | |
| IL_7RR5_229 | 1/C4/15:16, 1/C4/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7RR5_230 | 1/C4/21:27, 1/C4/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_7RR5_231 | 1/C4/28:29, 1/C4/49:52 | Minor groove platform | homologous IL_5TBW_374 NA | |
| IL_7RR5_232 | 1/C4/29:30, 1/C4/47:49 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_7RR5_233 | 1/C4/32:36, 1/C4/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_7RR5_234 | 1/C4/72:80, 1/C4/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7RR5_235 | 1/C4/84:87, 1/C4/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7RR5_001 | No text annotation | ||
| IL_7RR5_017 | No text annotation | ||
| IL_7RR5_236 | No text annotation | ||
| IL_7RR5_237 | No text annotation | ||
| IL_7RR5_054 | No text annotation | ||
| IL_7RR5_061 | No text annotation | ||
| IL_7RR5_242 | No text annotation | ||
| IL_7RR5_245 | Tandem non-canonical cWW pairs | ||
| IL_7RR5_246 | No text annotation | ||
| IL_7RR5_179 | Tandem non-canonical cWW pairs | ||
| IL_7RR5_180 | Tandem non-canonical cWW pairs | ||
| IL_7RR5_250 | No text annotation | ||
| IL_7RR5_225 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7RR5_001 | 1/C1/113:123, 1/C1/149:158, 1/C1/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_7RR5_031 | 1/C1/113:124, 1/C1/144:158, 1/C1/263:267 | No text annotation | ||
| J3_7RR5_032 | 1/C1/185:189, 1/C1/205:214, 1/C1/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
| J3_7RR5_033 | 1/C1/340:356, 1/C1/363:368, 1/C3/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_7RR5_002 | 1/C1/369:376, 1/C1/403:404, 1/C3/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7RR5_003 | 1/C1/502:503, 1/C1/588:597, 1/C1/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_7RR5_004 | 1/C1/814:820, 1/C1/905:907, 1/C1/923:926 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_7RR5_005 | 1/C1/828:831, 1/C1/863:867, 1/C1/892:897 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_7RR5_006 | 1/C1/986:987, 1/C1/1062:1066, 1/C1/1092:1098 | No text annotation | homologous J3_5TBW_006 NA | |
| J3_7RR5_007 | 1/C1/1230:1232, 1/C1/1256:1262, 1/C1/1277:1279 | No text annotation | homologous J3_8C3A_005 NA | |
| J3_7RR5_008 | 1/C1/1479:1485, 1/C1/1857:1859, 1/C1/1871:1874 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7RR5_009 | 1/C1/1488:1491, 1/C1/1837:1843, 1/C1/1852:1854 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_7RR5_010 | 1/C1/1526:1531, 1/C1/1591:1595, 1/C1/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_7RR5_034 | 1/C1/1537:1542, 1/C1/1551:1560, 1/C1/1579:1584 | No text annotation | ||
| J3_7RR5_011 | 1/C1/1631:1632, 1/C1/1641:1645, 1/C1/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7RR5_035 | 1/C1/1654:1658, 1/C1/1791:1792, 1/C1/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_7RR5_012 | 1/C1/2432:2435, 1/C1/2512:2517, 1/C1/2590:2597 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_7RR5_013 | 1/C1/2529:2532, 1/C1/2547:2563, 1/C1/2578:2581 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_7RR5_036 | 1/C1/2651:2653, 1/C1/2754:2765, 1/C1/2793:2798 | No text annotation | homologous J3_8P9A_061 J3_20992.1 | |
| J3_7RR5_014 | 1/C1/2664:2666, 1/C1/2690:2692, 1/C1/2701:2706 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_7RR5_015 | 1/C1/2886:2889, 1/C1/2914:2916, 1/C1/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7RR5_037 | 1/C1/3171:3176, 1/C1/3212:3220, 1/C1/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_7RR5_016 | 1/C1/3298:3300, 1/C1/3314:3318, 1/C1/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_7RR5_017 | 1/C2/41:42, 1/C2/433:439, 1/C2/464:466 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_7RR5_038 | 1/C2/41:48, 1/C2/431:439, 1/C2/464:466 | No text annotation | homologous J3_8C3A_083 NA | |
| J3_7RR5_039 | 1/C2/213:228, 1/C2/237:243, 1/C2/250:252 | No text annotation | ||
| J3_7RR5_018 | 1/C2/633:635, 1/C2/861:865, 1/C2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_7RR5_043 | 1/C2/633:635, 1/C2/861:866, 1/C2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_7RR5_019 | 1/C2/760:763, 1/C2/773:775, 1/C2/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_7RR5_020 | 1/C2/881:884, 1/C2/928:936, 1/C2/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_7RR5_021 | 1/C2/1037:1039, 1/C2/1079:1083, 1/C2/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_7RR5_022 | 1/C2/1161:1164, 1/C2/1581:1587, 1/C2/1609:1616 | No text annotation | homologous J3_4V88_035 NA | |
| J3_7RR5_023 | 1/C2/1168:1171, 1/C2/1468:1470, 1/C2/1574:1577 | No text annotation | homologous J3_4V88_036 NA | |
| J3_7RR5_024 | 1/C2/1180:1187, 1/C2/1198:1209, 1/C2/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_7RR5_025 | 1/C2/1215:1220, 1/C2/1263:1267, 1/C2/1442:1448 | No text annotation | homologous J3_4V88_038 NA | |
| J3_7RR5_026 | 1/C2/1283:1288, 1/C2/1327:1332, 1/C2/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_7RR5_027 | 1/C2/1293:1294, 1/C2/1303:1306, 1/C2/1318:1322 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_7RR5_028 | 1/C2/1336:1338, 1/C2/1386:1389, 1/C2/1412:1415 | No text annotation | homologous J3_8C3A_043 NA | |
| J3_7RR5_041 | 1/C2/1336:1338, 1/C2/1386:1391, 1/C2/1407:1415 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_7RR5_029 | 1/C2/1470:1474, 1/C2/1533:1540, 1/C2/1571:1574 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_7RR5_042 | 1/C3/44:45, 1/C3/58:64, 1/C3/96:100 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_7RR5_030 | 1/C4/9:14, 1/C4/66:67, 1/C4/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J4_7RR5_014 | 1/A/6:10, 1/A/25:26, 1/A/44:49, 1/A/65:67 | No text annotation | ||
| J4_7RR5_002 | 1/C1/112:113, 1/C1/267:272, 1/C1/293:299, 1/C1/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_7RR5_003 | 1/C1/185:189, 1/C1/205:208, 1/C1/212:214, 1/C1/226:231 | No text annotation | homologous J4_8P9A_013 J4_12410.1 | |
| J4_7RR5_004 | 1/C1/1451:1457, 1/C1/1475:1476, 1/C1/1877:1880, 1/C1/2352:2353 | No text annotation | homologous J4_8C3A_003 NA | |
| J4_7RR5_005 | 1/C1/1492:1496, 1/C1/1520:1525, 1/C1/1614:1615, 1/C1/1829:1836 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_7RR5_006 | 1/C1/1674:1675, 1/C1/1693:1694, 1/C1/1752:1753, 1/C1/1772:1773 | No text annotation | homologous J4_8P9A_016 J4_24280.2 | |
| J4_7RR5_007 | 1/C1/2130:2134, 1/C1/2146:2150, 1/C1/2186:2190, 1/C1/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_7RR5_008 | 1/C1/2192:2194, 1/C1/2248:2249, 1/C1/2267:2276, 1/C1/2310:2315 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_7RR5_009 | 1/C1/2654:2658, 1/C1/2712:2716, 1/C1/2740:2742, 1/C1/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_7RR5_010 | 1/C1/3010:3012, 1/C1/3042:3043, 1/C1/3098:3100, 1/C1/3134:3136 | No text annotation | homologous J4_8C3A_009 NA | |
| J4_7RR5_011 | 1/C2/99:107, 1/C2/307:309, 1/C2/357:361, 1/C2/383:384 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_7RR5_012 | 1/C2/622:624, 1/C2/975:980, 1/C2/1021:1032, 1/C2/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_7RR5_013 | 1/P/7:10, 1/P/25:27, 1/P/43:49, 1/P/65:66 | tRNA junction | homologous J4_3TUP_001 J4_70449.27 | |
| J5_7RR5_001 | 1/C1/20:22, 1/C3/35:42, 1/C3/102:107, 1/C3/115:116, 1/C3/137:139 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_7RR5_002 | 1/C1/658:663, 1/C1/799:802, 1/C1/941:944, 1/C1/1375:1376, 1/C1/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_7RR5_003 | 1/C1/675:678, 1/C1/702:706, 1/C1/713:721, 1/C1/749:751, 1/C1/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
| J5_7RR5_004 | 1/C1/1906:1914, 1/C1/1938:1939, 1/C1/2109:2110, 1/C1/2114:2122, 1/C1/2331:2333 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_7RR5_005 | 1/C1/2399:2406, 1/C1/2815:2823, 1/C1/2867:2876, 1/C1/2951:2957, 1/C1/2975:2980 | No text annotation | ||
| J5_7RR5_006 | 1/C1/2416:2419, 1/C1/2611:2614, 1/C1/2627:2628, 1/C1/2650:2651, 1/C1/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J5_7RR5_007 | 1/C2/31:35, 1/C2/473:479, 1/C2/509:516, 1/C2/536:546, 1/C2/592:595 | No text annotation | ||
| J5_7RR5_008 | 1/C2/54:57, 1/C2/90:97, 1/C2/386:388, 1/C2/409:411, 1/C2/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_7RR5_009 | 1/C2/124:143, 1/C2/172:182, 1/C2/203:204, 1/C2/263:265, 1/C2/289:293 | No text annotation | ||
| J5_7RR5_010 | 1/C2/124:143, 1/C2/172:182, 1/C2/203:204, 1/C2/263:267, 1/C2/288:293 | No text annotation | ||
| J5_7RR5_011 | 1/C2/636:641, 1/C2/693:699, 1/C2/739:744, 1/C2/807:817, 1/C2/854:860 | No text annotation | ||
| J6_7RR5_001 | 1/C1/22:27, 1/C1/58:68, 1/C1/75:79, 1/C1/106:110, 1/C1/321:331, 1/C3/32:35 | No text annotation | ||
| J6_7RR5_002 | 1/C1/2416:2419, 1/C1/2611:2614, 1/C1/2627:2628, 1/C1/2650:2653, 1/C1/2754:2765, 1/C1/2793:2804 | No text annotation | ||
| J7_7RR5_001 | 1/C1/949:954, 1/C1/967:968, 1/C1/1114:1117, 1/C1/1141:1146, 1/C1/1157:1161, 1/C1/1338:1339, 1/C1/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7RR5_040 | No text annotation | ||
| J4_7RR5_001 | No text annotation |
Coloring options: