6UZ7 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6UZ7_001 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6UZ7_006 | 1/2/242:249 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_6UZ7_129 | 1/2/269:284 | No text annotation | ||
| HL_6UZ7_130 | 1/2/329:337 | No text annotation | homologous HL_8CRE_198 HL_87268.3 | |
| HL_6UZ7_009 | 1/2/367:372 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6UZ7_010 | 1/2/392:403 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6UZ7_011 | 1/2/413:418 | UNCG | homologous HL_4V88_196 NA | |
| HL_6UZ7_012 | 1/2/449:455 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6UZ7_014 | 1/2/519:531 | No text annotation | homologous HL_4V88_199 NA | |
| HL_6UZ7_015 | 1/2/568:573 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6UZ7_017 | 1/2/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_6UZ7_020 | 1/2/898:909 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_6UZ7_021 | 1/2/936:941 | GNRA | homologous HL_4V88_207 NA | |
| HL_6UZ7_131 | 1/2/995:1007 | No text annotation | ||
| HL_6UZ7_024 | 1/2/1083:1088 | GNRA | homologous HL_4V88_210 NA | |
| HL_6UZ7_025 | 1/2/1120:1125 | GNRA | homologous HL_4V88_211 NA | |
| HL_6UZ7_026 | 1/2/1187:1196 | No text annotation | homologous HL_4V88_212 NA | |
| HL_6UZ7_027 | 1/2/1233:1249 | No text annotation | ||
| HL_6UZ7_028 | 1/2/1295:1300 | GNRA | homologous HL_4V88_214 NA | |
| HL_6UZ7_029 | 1/2/1308:1315 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6UZ7_031 | 1/2/1394:1400 | GNRA | homologous HL_4V88_217 NA | |
| HL_6UZ7_034 | 1/2/1592:1600 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6UZ7_036 | 1/2/1776:1781 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_6UZ7_038 | 1/3/31:39 | tRNA anticodon loop | homologous HL_4WT8_216 HL_81376.3 | |
| HL_6UZ7_040 | 1/5/38:45 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_6UZ7_041 | 1/5/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6UZ7_042 | 1/5/90:96 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_6UZ7_043 | 1/5/132:136 | No text annotation | homologous HL_5TBW_004 NA | |
| HL_6UZ7_044 | 1/5/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6UZ7_045 | 1/5/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6UZ7_046 | 1/5/216:224 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_6UZ7_047 | 1/5/278:287 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_6UZ7_048 | 1/5/303:312 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_6UZ7_049 | 1/5/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6UZ7_050 | 1/5/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6UZ7_052 | 1/5/572:577 | GNRA | homologous HL_5TBW_013 NA | |
| HL_6UZ7_053 | 1/5/613:622 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_6UZ7_054 | 1/5/659:667 | No text annotation | homologous HL_5TBW_015 NA | |
| HL_6UZ7_055 | 1/5/680:685 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6UZ7_056 | 1/5/704:709 | GNRA | homologous HL_5TBW_017 NA | |
| HL_6UZ7_057 | 1/5/734:739 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_6UZ7_058 | 1/5/815:820 | GNRA | homologous HL_5TBW_019 NA | |
| HL_6UZ7_059 | 1/5/847:856 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_6UZ7_060 | 1/5/881:889 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_6UZ7_061 | 1/5/929:934 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_6UZ7_063 | 1/5/1047:1054 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_6UZ7_064 | 1/5/1097:1103 | GNRA | homologous HL_5TBW_025 NA | |
| HL_6UZ7_065 | 1/5/1119:1126 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6UZ7_068 | 1/5/1318:1328 | No text annotation | ||
| HL_6UZ7_069 | 1/5/1374:1379 | GNRA | homologous HL_5TBW_030 NA | |
| HL_6UZ7_070 | 1/5/1433:1441 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_6UZ7_071 | 1/5/1477:1483 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_6UZ7_072 | 1/5/1515:1520 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6UZ7_074 | 1/5/1568:1577 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_6UZ7_075 | 1/5/1603:1608 | GNRA | homologous HL_5TBW_036 NA | |
| HL_6UZ7_076 | 1/5/1649:1657 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_6UZ7_077 | 1/5/1688:1694 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_6UZ7_079 | 1/5/1761:1765 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6UZ7_080 | 1/5/1813:1820 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6UZ7_081 | 1/5/1831:1837 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6UZ7_082 | 1/5/1892:1897 | UNCG | homologous HL_8C3A_043 NA | |
| HL_6UZ7_083 | 1/5/2079:2083 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6UZ7_084 | 1/5/2104:2114 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_6UZ7_085 | 1/5/2133:2139 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6UZ7_086 | 1/5/2189:2194 | GNRA | homologous HL_5TBW_048 NA | |
| HL_6UZ7_088 | 1/5/2261:2269 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_6UZ7_089 | 1/5/2338:2347 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_6UZ7_125 | 1/5/2498:2549 | No text annotation | ||
| HL_6UZ7_092 | 1/5/2584:2592 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_6UZ7_093 | 1/5/2601:2613 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_6UZ7_094 | 1/5/2641:2649 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_6UZ7_095 | 1/5/2661:2668 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_6UZ7_096 | 1/5/2692:2700 | No text annotation | homologous HL_5TBW_058 NA | |
| HL_6UZ7_097 | 1/5/2712:2717 | GNRA | homologous HL_5TBW_059 NA | |
| HL_6UZ7_098 | 1/5/2744:2752 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_6UZ7_099 | 1/5/2808:2816 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_6UZ7_100 | 1/5/2865:2872 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6UZ7_101 | 1/5/2888:2894 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6UZ7_102 | 1/5/2931:2936 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6UZ7_103 | 1/5/2993:2998 | GNRA | geometric HL_5J7L_197 NA | |
| HL_6UZ7_104 | 1/5/3036:3041 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_6UZ7_105 | 1/5/3078:3092 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6UZ7_106 | 1/5/3161:3167 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_6UZ7_107 | 1/5/3208:3215 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_6UZ7_108 | 1/5/3271:3279 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_6UZ7_126 | 1/7/32:45 | No text annotation | homologous HL_8P9A_183 HL_01182.1 | |
| HL_6UZ7_110 | 1/7/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_6UZ7_111 | 1/7/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6UZ7_127 | 1/8/47:56 | Pseudoknot with intercalation | geometric HL_5TBW_230 NA | |
| HL_6UZ7_112 | 1/8/69:89 | No text annotation | geometric HL_8C3A_230 NA | |
| HL_6UZ7_113 | 1/8/108:114 | No text annotation | geometric HL_5TBW_075 NA | |
| HL_6UZ7_114 | 1/8/124:129 | No text annotation | geometric HL_5TBW_076 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6UZ7_002 | No text annotation | ||
| HL_6UZ7_003 | GNRA related | ||
| HL_6UZ7_115 | No text annotation | ||
| HL_6UZ7_128 | No text annotation | ||
| HL_6UZ7_004 | No text annotation | ||
| HL_6UZ7_005 | UNCG | ||
| HL_6UZ7_116 | No text annotation | ||
| HL_6UZ7_007 | No text annotation | ||
| HL_6UZ7_008 | No text annotation | ||
| HL_6UZ7_013 | No text annotation | ||
| HL_6UZ7_117 | No text annotation | ||
| HL_6UZ7_016 | No text annotation | ||
| HL_6UZ7_018 | No text annotation | ||
| HL_6UZ7_019 | Pseudoknot geometry | ||
| HL_6UZ7_022 | No text annotation | ||
| HL_6UZ7_023 | No text annotation | ||
| HL_6UZ7_118 | No text annotation | ||
| HL_6UZ7_119 | No text annotation | ||
| HL_6UZ7_030 | No text annotation | ||
| HL_6UZ7_032 | GNRA | ||
| HL_6UZ7_033 | No text annotation | ||
| HL_6UZ7_120 | No text annotation | ||
| HL_6UZ7_132 | No text annotation | ||
| HL_6UZ7_035 | No text annotation | ||
| HL_6UZ7_037 | No text annotation | ||
| HL_6UZ7_039 | No text annotation | ||
| HL_6UZ7_051 | No text annotation | ||
| HL_6UZ7_062 | No text annotation | ||
| HL_6UZ7_121 | No text annotation | ||
| HL_6UZ7_066 | No text annotation | ||
| HL_6UZ7_067 | GNRA with tandem sheared | ||
| HL_6UZ7_073 | No text annotation | ||
| HL_6UZ7_122 | No text annotation | ||
| HL_6UZ7_123 | No text annotation | ||
| HL_6UZ7_078 | No text annotation | ||
| HL_6UZ7_087 | No text annotation | ||
| HL_6UZ7_124 | No text annotation | ||
| HL_6UZ7_090 | GNRA | ||
| HL_6UZ7_091 | No text annotation | ||
| HL_6UZ7_109 | Mini UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6UZ7_001 | 1/2/24:26, 1/2/599:600 | Single bulged C | homologous IL_8C3A_392 NA | |
| IL_6UZ7_002 | 1/2/35:37, 1/2/470:472 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_6UZ7_003 | 1/2/37:41, 1/2/465:470 | Triple sheared related | homologous IL_4V88_386 NA | |
| IL_6UZ7_004 | 1/2/42:48, 1/2/430:432 | No text annotation | homologous IL_4V88_387 NA | |
| IL_6UZ7_005 | 1/2/50:52, 1/2/427:428 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6UZ7_006 | 1/2/58:63, 1/2/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_6UZ7_007 | 1/2/64:69, 1/2/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_6UZ7_008 | 1/2/109:112, 1/2/301:304 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_6UZ7_009 | 1/2/113:116, 1/2/299:300 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_6UZ7_010 | 1/2/117:122, 1/2/294:298 | No text annotation | homologous IL_4V88_393 NA | |
| IL_6UZ7_011 | 1/2/142:148, 1/2/164:171 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_6UZ7_248 | 1/2/203:205, 1/2/258:262 | No text annotation | homologous IL_8CRE_403 IL_36931.3 | |
| IL_6UZ7_249 | 1/2/205:208, 1/2/255:258 | Tandem non-canonical cWW pairs | geometric IL_4XW0_002 IL_71194.3 | |
| IL_6UZ7_017 | 1/2/269:273, 1/2/281:284 | No text annotation | ||
| IL_6UZ7_018 | 1/2/310:315, 1/2/347:354 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6UZ7_019 | 1/2/317:322, 1/2/344:345 | No text annotation | geometric IL_5Y58_001 IL_37738.1 | |
| IL_6UZ7_020 | 1/2/362:364, 1/2/375:380 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6UZ7_021 | 1/2/388:390, 1/2/405:407 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6UZ7_022 | 1/2/410:412, 1/2/419:421 | Isolated non-canonical cWW pair | homologous IL_4V88_406 NA | |
| IL_6UZ7_023 | 1/2/438:440, 1/2/462:463 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_6UZ7_250 | 1/2/442:446, 1/2/459:460 | C-loop | homologous IL_8CRE_414 IL_26900.2 | |
| IL_6UZ7_251 | 1/2/446:447, 1/2/457:459 | Single bulged G | homologous IL_8P9A_398 IL_28408.3 | |
| IL_6UZ7_027 | 1/2/549:556, 1/2/586:587 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_6UZ7_029 | 1/2/561:567, 1/2/574:582 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6UZ7_030 | 1/2/615:621, 1/2/1103:1104 | No text annotation | homologous IL_4V88_416 NA | |
| IL_6UZ7_031 | 1/2/623:625, 1/2/972:974 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6UZ7_032 | 1/2/626:630, 1/2/967:971 | tSH-tWH-tHS | homologous IL_4V88_418 NA | |
| IL_6UZ7_254 | 1/2/746:747, 1/2/801:804 | No text annotation | homologous IL_8CRE_428 IL_73108.3 | |
| IL_6UZ7_255 | 1/2/748:750, 1/2/798:800 | Isolated non-canonical cWW pair | homologous IL_8CRE_429 IL_71625.4 | |
| IL_6UZ7_035 | 1/2/751:759, 1/2/790:797 | No text annotation | geometric IL_4V88_425 NA | |
| IL_6UZ7_037 | 1/2/866:869, 1/2/956:960 | Tandem non-canonical cWW pairs | geometric IL_4V88_429 NA | |
| IL_6UZ7_038 | 1/2/870:873, 1/2/952:955 | Tandem non-canonical cWW pairs | homologous IL_4V88_430 NA | |
| IL_6UZ7_039 | 1/2/873:877, 1/2/949:952 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_6UZ7_256 | 1/2/884:887, 1/2/923:926 | Tandem non-canonical cWW pairs | homologous IL_8P9A_421 IL_15225.3 | |
| IL_6UZ7_041 | 1/2/892:898, 1/2/909:918 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_6UZ7_042 | 1/2/983:993, 1/2/1009:1016 | No text annotation | ||
| IL_6UZ7_257 | 1/2/1033:1035, 1/2/1094:1100 | No text annotation | homologous IL_8P9A_425 IL_82706.3 | |
| IL_6UZ7_044 | 1/2/1040:1043, 1/2/1073:1076 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_6UZ7_045 | 1/2/1050:1052, 1/2/1065:1066 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_6UZ7_046 | 1/2/1110:1117, 1/2/1128:1133 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_6UZ7_047 | 1/2/1145:1146, 1/2/1628:1630 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_6UZ7_048 | 1/2/1148:1150, 1/2/1625:1626 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6UZ7_258 | 1/2/1156:1159, 1/2/1615:1619 | C-loop | homologous IL_8CRE_445 IL_63596.13 | |
| IL_6UZ7_229 | 1/2/1271:1277, 1/2/1428:1436 | No text annotation | homologous IL_8P9A_439 IL_99893.2 | |
| IL_6UZ7_055 | 1/2/1275:1277, 1/2/1428:1434 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_6UZ7_056 | 1/2/1279:1280, 1/2/1424:1426 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6UZ7_260 | 1/2/1289:1291, 1/2/1322:1324 | Isolated non-canonical cWW pair | homologous IL_8CRE_456 IL_01003.5 | |
| IL_6UZ7_058 | 1/2/1305:1307, 1/2/1316:1317 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_6UZ7_261 | 1/2/1344:1347, 1/2/1375:1378 | No text annotation | homologous IL_8CRE_481 IL_78800.3 | |
| IL_6UZ7_064 | 1/2/1486:1492, 1/2/1511:1516 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_6UZ7_067 | 1/2/1634:1636, 1/2/1762:1765 | No text annotation | homologous IL_4V88_463 NA | |
| IL_6UZ7_068 | 1/2/1636:1639, 1/2/1758:1762 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6UZ7_069 | 1/2/1640:1645, 1/2/1751:1757 | No text annotation | ||
| IL_6UZ7_233 | 1/2/1648:1650, 1/2/1746:1748 | Isolated non-canonical cWW pair | homologous IL_8P9A_456 IL_01003.5 | |
| IL_6UZ7_071 | 1/2/1651:1654, 1/2/1742:1745 | Double sheared | homologous IL_4V88_468 NA | |
| IL_6UZ7_072 | 1/2/1654:1656, 1/2/1741:1742 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_6UZ7_073 | 1/2/1663:1665, 1/2/1732:1734 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6UZ7_074 | 1/2/1667:1670, 1/2/1727:1730 | Double sheared | homologous IL_4V88_471 NA | |
| IL_6UZ7_075 | 1/2/1673:1676, 1/2/1721:1724 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_6UZ7_264 | 1/2/1676:1680, 1/2/1717:1721 | Triple sheared | homologous IL_8CRE_476 IL_15190.3 | |
| IL_6UZ7_080 | 1/5/7:8, 1/8/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6UZ7_081 | 1/5/13:15, 1/8/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6UZ7_082 | 1/5/27:28, 1/5/56:58 | Single stack bend | homologous IL_5TBW_004 NA | |
| IL_6UZ7_083 | 1/5/31:38, 1/5/45:53 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_6UZ7_084 | 1/5/82:89, 1/5/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_6UZ7_085 | 1/5/123:124, 1/5/144:149 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_6UZ7_086 | 1/5/125:127, 1/5/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_6UZ7_087 | 1/5/164:166, 1/5/256:257 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_6UZ7_090 | 1/5/189:191, 1/5/204:205 | Single bulged U | homologous IL_5TBW_012 NA | |
| IL_6UZ7_091 | 1/5/337:339, 1/8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6UZ7_092 | 1/5/376:379, 1/5/390:403 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_6UZ7_093 | 1/5/404:410, 1/8/13:19 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_6UZ7_095 | 1/5/483:484, 1/5/550:552 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_6UZ7_096 | 1/5/488:496, 1/5/540:546 | No text annotation | geometric IL_5TBW_019 NA | |
| IL_6UZ7_097 | 1/5/497:499, 1/5/537:539 | Isolated non-canonical cWW pair | geometric IL_4E48_003 IL_01003.5 | |
| IL_6UZ7_098 | 1/5/502:509, 1/5/526:534 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_6UZ7_099 | 1/5/641:643, 1/5/763:765 | Isolated non-canonical cWW pair | homologous IL_5TBW_021 NA | |
| IL_6UZ7_100 | 1/5/653:657, 1/5/669:673 | No text annotation | homologous IL_8C3A_024 NA | |
| IL_6UZ7_101 | 1/5/698:701, 1/5/712:716 | UAA/GAN variation | homologous IL_5TBW_023 NA | |
| IL_6UZ7_102 | 1/5/723:724, 1/5/750:752 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_6UZ7_238 | 1/5/726:727, 1/5/746:748 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_6UZ7_104 | 1/5/729:734, 1/5/739:744 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_6UZ7_105 | 1/5/774:776, 1/5/909:911 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_6UZ7_106 | 1/5/776:780, 1/5/902:909 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_6UZ7_107 | 1/5/799:800, 1/5/866:868 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_6UZ7_108 | 1/5/804:805, 1/5/830:832 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_6UZ7_109 | 1/5/805:809, 1/5/826:830 | Triple sheared | geometric IL_4WF9_024 IL_15190.3 | |
| IL_6UZ7_110 | 1/5/840:843, 1/5/859:861 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6UZ7_111 | 1/5/844:846, 1/5/857:858 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6UZ7_112 | 1/5/878:880, 1/5/890:894 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_6UZ7_113 | 1/5/925:927, 1/5/936:938 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6UZ7_265 | 1/5/940:941, 1/5/1082:1084 | Single stack bend | homologous IL_8P9A_263 IL_15011.4 | |
| IL_6UZ7_115 | 1/5/948:953, 1/5/1072:1075 | Kink-turn related | homologous IL_8C3A_039 NA | |
| IL_6UZ7_116 | 1/5/954:956, 1/5/1070:1071 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6UZ7_117 | 1/5/962:968, 1/5/1023:1029 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_6UZ7_118 | 1/5/968:969, 1/5/1021:1023 | Minor groove platform | homologous IL_5TBW_039 NA | |
| IL_6UZ7_119 | 1/5/970:975, 1/5/1017:1020 | C-loop | homologous IL_5TBW_040 NA | |
| IL_6UZ7_120 | 1/5/977:980, 1/5/1012:1015 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_6UZ7_121 | 1/5/980:982, 1/5/1010:1012 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_6UZ7_123 | 1/5/1040:1042, 1/5/1058:1060 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_6UZ7_124 | 1/5/1045:1047, 1/5/1054:1055 | Single bulged A | homologous IL_5TBW_045 NA | |
| IL_6UZ7_125 | 1/5/1091:1093, 1/5/1107:1109 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_6UZ7_127 | 1/5/1138:1142, 1/5/1299:1303 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_6UZ7_128 | 1/5/1144:1151, 1/5/1296:1297 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_6UZ7_129 | 1/5/1151:1153, 1/5/1295:1296 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_6UZ7_130 | 1/5/1158:1176, 1/5/1270:1290 | No text annotation | ||
| IL_6UZ7_131 | 1/5/1178:1180, 1/5/1267:1268 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6UZ7_132 | 1/5/1189:1197, 1/5/1254:1258 | No text annotation | ||
| IL_6UZ7_135 | 1/5/1347:1349, 1/5/1399:1402 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6UZ7_136 | 1/5/1356:1358, 1/5/1391:1392 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6UZ7_137 | 1/5/1359:1366, 1/5/1386:1390 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_6UZ7_138 | 1/5/1369:1371, 1/5/1382:1383 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_6UZ7_139 | 1/5/1415:1421, 1/5/2323:2328 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_6UZ7_140 | 1/5/1463:1466, 1/5/1804:1805 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_74641.3 | |
| IL_6UZ7_266 | 1/5/1471:1476, 1/5/1484:1487 | No text annotation | ||
| IL_6UZ7_142 | 1/5/1503:1507, 1/5/1554:1559 | UAA/GAN | homologous IL_5TBW_063 NA | |
| IL_6UZ7_143 | 1/5/1587:1590, 1/5/1793:1795 | Other IL | homologous IL_5TBW_064 NA | |
| IL_6UZ7_267 | 1/5/1592:1593, 1/5/1788:1791 | Multiple bulged bases | homologous IL_8CRE_070 NA | |
| IL_6UZ7_145 | 1/5/1614:1618, 1/5/1775:1779 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_6UZ7_146 | 1/5/1630:1632, 1/5/1755:1757 | Isolated non-canonical cWW pair | homologous IL_5TBW_068 NA | |
| IL_6UZ7_147 | 1/5/1635:1637, 1/5/1750:1752 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.5 | |
| IL_6UZ7_148 | 1/5/1638:1639, 1/5/1747:1749 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_6UZ7_149 | 1/5/1639:1640, 1/5/1745:1747 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6UZ7_150 | 1/5/1663:1667, 1/5/1716:1721 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_6UZ7_151 | 1/5/1671:1676, 1/5/1706:1712 | No text annotation | homologous IL_8C3A_078 NA | |
| IL_6UZ7_152 | 1/5/1680:1686, 1/5/1696:1702 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6UZ7_153 | 1/5/1852:1858, 1/5/2315:2318 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_6UZ7_154 | 1/5/1864:1866, 1/5/2307:2309 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6UZ7_155 | 1/5/1867:1870, 1/5/2305:2306 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_6UZ7_243 | 1/5/1867:1875, 1/5/2302:2306 | No text annotation | homologous IL_8P9A_305 IL_80252.2 | |
| IL_6UZ7_156 | 1/5/1870:1875, 1/5/2302:2305 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_6UZ7_157 | 1/5/1887:1892, 1/5/1897:1903 | tSH-tSH-tHH-tHS | geometric IL_5TBW_078 NA | |
| IL_6UZ7_158 | 1/5/1909:1911, 1/5/2075:2077 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
| IL_6UZ7_159 | 1/5/1916:1917, 1/5/2067:2070 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6UZ7_162 | 1/5/2097:2098, 1/5/2292:2294 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6UZ7_163 | 1/5/2125:2130, 1/5/2142:2149 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6UZ7_164 | 1/5/2165:2168, 1/5/2214:2215 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6UZ7_165 | 1/5/2169:2170, 1/5/2210:2213 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6UZ7_166 | 1/5/2173:2179, 1/5/2204:2207 | No text annotation | ||
| IL_6UZ7_167 | 1/5/2179:2187, 1/5/2196:2204 | No text annotation | ||
| IL_6UZ7_168 | 1/5/2245:2246, 1/5/2276:2279 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_6UZ7_169 | 1/5/2246:2257, 1/5/2273:2276 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_6UZ7_170 | 1/5/2360:2363, 1/5/2954:2956 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_6UZ7_171 | 1/5/2365:2367, 1/5/2949:2952 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6UZ7_172 | 1/5/2378:2380, 1/5/2779:2780 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6UZ7_173 | 1/5/2381:2382, 1/5/2775:2778 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6UZ7_174 | 1/5/2392:2394, 1/5/2572:2575 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6UZ7_177 | 1/5/2489:2495, 1/5/2552:2555 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_6UZ7_178 | 1/5/2582:2583, 1/5/2593:2595 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6UZ7_179 | 1/5/2634:2636, 1/5/2654:2658 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_6UZ7_180 | 1/5/2682:2684, 1/5/2708:2709 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_6UZ7_181 | 1/5/2686:2689, 1/5/2703:2706 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_6UZ7_182 | 1/5/2738:2741, 1/5/2755:2756 | Single stack bend | geometric IL_4V83_236 IL_15011.4 | |
| IL_6UZ7_183 | 1/5/2791:2794, 1/5/2831:2835 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_6UZ7_184 | 1/5/2794:2796, 1/5/2830:2831 | Major groove platform | geometric IL_4V9F_083 IL_46637.3 | |
| IL_6UZ7_185 | 1/5/2796:2798, 1/5/2826:2830 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
| IL_6UZ7_186 | 1/5/2803:2807, 1/5/2817:2821 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6UZ7_187 | 1/5/2844:2845, 1/5/2917:2919 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6UZ7_188 | 1/5/2847:2849, 1/5/2911:2915 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_6UZ7_189 | 1/5/2849:2850, 1/5/2908:2911 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_6UZ7_190 | 1/5/2857:2859, 1/5/2880:2882 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_6UZ7_191 | 1/5/2859:2860, 1/5/2877:2880 | Major groove platform with intercalation | homologous IL_5TBW_111 NA | |
| IL_6UZ7_192 | 1/5/2886:2888, 1/5/2894:2896 | Isolated non-canonical cWW pair | homologous IL_5TBW_112 NA | |
| IL_6UZ7_193 | 1/5/2928:2929, 1/5/2938:2940 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_6UZ7_194 | 1/5/2972:2975, 1/5/3107:3112 | Double sheared | homologous IL_5TBW_114 NA | |
| IL_6UZ7_195 | 1/5/2980:2982, 1/5/3008:3010 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_6UZ7_196 | 1/5/2986:2993, 1/5/2998:3004 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_116 NA | |
| IL_6UZ7_197 | 1/5/3015:3019, 1/5/3059:3062 | Major groove minor groove platform with tHH | homologous IL_5TBW_117 NA | |
| IL_6UZ7_198 | 1/5/3022:3027, 1/5/3052:3056 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_6UZ7_199 | 1/5/3031:3032, 1/5/3045:3048 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6UZ7_200 | 1/5/3071:3075, 1/5/3095:3099 | UAA/GAN | homologous IL_8P9A_348 IL_08938.2 | |
| IL_6UZ7_201 | 1/5/3132:3138, 1/5/3248:3254 | No text annotation | ||
| IL_6UZ7_202 | 1/5/3145:3147, 1/5/3178:3179 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_6UZ7_203 | 1/5/3147:3156, 1/5/3172:3178 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_6UZ7_204 | 1/5/3193:3197, 1/5/3226:3228 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_6UZ7_205 | 1/5/3203:3206, 1/5/3217:3220 | Tandem non-canonical cWW pairs | homologous IL_5TBW_128 NA | |
| IL_6UZ7_206 | 1/5/3268:3271, 1/5/3279:3282 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_6UZ7_207 | 1/5/3286:3288, 1/5/3355:3356 | Single bulged U | homologous IL_8C3A_136 NA | |
| IL_6UZ7_208 | 1/5/3292:3293, 1/5/3349:3351 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_6UZ7_209 | 1/5/3296:3298, 1/5/3341:3346 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_6UZ7_210 | 1/5/3300:3305, 1/5/3335:3339 | No text annotation | homologous IL_5TBW_133 NA | |
| IL_6UZ7_211 | 1/5/3308:3310, 1/5/3331:3332 | Single bulged U | geometric IL_6UFG_004 IL_97561.6 | |
| IL_6UZ7_212 | 1/5/3310:3313, 1/5/3328:3331 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_6UZ7_213 | 1/5/3317:3318, 1/5/3321:3324 | Multiple bulged bases | homologous IL_5TBW_136 NA | |
| IL_6UZ7_214 | 1/7/15:16, 1/7/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6UZ7_215 | 1/7/21:27, 1/7/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6UZ7_216 | 1/7/28:29, 1/7/49:52 | Minor groove platform | homologous IL_5TBW_374 NA | |
| IL_6UZ7_217 | 1/7/29:30, 1/7/47:49 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_6UZ7_218 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_6UZ7_219 | 1/7/72:80, 1/7/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6UZ7_220 | 1/7/84:87, 1/7/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6UZ7_221 | 1/8/44:64, 1/8/96:100 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_6UZ7_222 | 1/8/64:67, 1/8/92:96 | Tandem non-canonical cWW pairs | geometric IL_1GID_008 NA | |
| IL_6UZ7_223 | 1/8/68:69, 1/8/89:91 | Single bulged U | geometric IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6UZ7_012 | Isolated cWH basepair | ||
| IL_6UZ7_013 | No text annotation | ||
| IL_6UZ7_014 | No text annotation | ||
| IL_6UZ7_224 | No text annotation | ||
| IL_6UZ7_015 | Single stack bend | ||
| IL_6UZ7_016 | Single bulged A | ||
| IL_6UZ7_225 | No text annotation | ||
| IL_6UZ7_024 | C-loop with extra cWW pair | ||
| IL_6UZ7_252 | Isolated tWW contact | ||
| IL_6UZ7_025 | No text annotation | ||
| IL_6UZ7_026 | Double sheared | ||
| IL_6UZ7_028 | Single bulged U | ||
| IL_6UZ7_226 | No text annotation | ||
| IL_6UZ7_253 | No text annotation | ||
| IL_6UZ7_033 | Major groove minor groove platform with extra cWW | ||
| IL_6UZ7_034 | Tandem non-canonical cWW pairs | ||
| IL_6UZ7_036 | No text annotation | ||
| IL_6UZ7_040 | No text annotation | ||
| IL_6UZ7_043 | No text annotation | ||
| IL_6UZ7_227 | Isolated non-canonical cWW pair | ||
| IL_6UZ7_049 | No text annotation | ||
| IL_6UZ7_050 | Isolated non-canonical cWW pair | ||
| IL_6UZ7_051 | Minor groove platform | ||
| IL_6UZ7_052 | No text annotation | ||
| IL_6UZ7_259 | No text annotation | ||
| IL_6UZ7_228 | No text annotation | ||
| IL_6UZ7_053 | Single bulged U | ||
| IL_6UZ7_054 | Isolated cWS basepair | ||
| IL_6UZ7_057 | Tandem non-canonical cWW pairs | ||
| IL_6UZ7_059 | Isolated non-canonical cWW pair | ||
| IL_6UZ7_060 | Single stack bend | ||
| IL_6UZ7_061 | No text annotation | ||
| IL_6UZ7_230 | No text annotation | ||
| IL_6UZ7_062 | Tandem non-canonical cWW pairs | ||
| IL_6UZ7_231 | No text annotation | ||
| IL_6UZ7_262 | No text annotation | ||
| IL_6UZ7_063 | Major groove platform; stack outside cWW | ||
| IL_6UZ7_232 | No text annotation | ||
| IL_6UZ7_263 | No text annotation | ||
| IL_6UZ7_065 | Tandem non-canonical cWW pairs | ||
| IL_6UZ7_066 | No text annotation | ||
| IL_6UZ7_070 | Tandem non-canonical cWW pairs | ||
| IL_6UZ7_076 | Quadruple sheared | ||
| IL_6UZ7_077 | No text annotation | ||
| IL_6UZ7_078 | Single stack bend | ||
| IL_6UZ7_079 | No text annotation | ||
| IL_6UZ7_234 | No text annotation | ||
| IL_6UZ7_235 | No text annotation | ||
| IL_6UZ7_088 | No text annotation | ||
| IL_6UZ7_089 | Major groove intercalation | ||
| IL_6UZ7_094 | No text annotation | ||
| IL_6UZ7_236 | Isolated non-canonical cWW pair | ||
| IL_6UZ7_237 | Tandem non-canonical cWW pairs | ||
| IL_6UZ7_103 | Isolated non-canonical cWW pair | ||
| IL_6UZ7_114 | No text annotation | ||
| IL_6UZ7_239 | No text annotation | ||
| IL_6UZ7_240 | No text annotation | ||
| IL_6UZ7_122 | No text annotation | ||
| IL_6UZ7_126 | No text annotation | ||
| IL_6UZ7_133 | No text annotation | ||
| IL_6UZ7_241 | No text annotation | ||
| IL_6UZ7_134 | Major groove platform with extra cWW | ||
| IL_6UZ7_141 | No text annotation | ||
| IL_6UZ7_144 | No text annotation | ||
| IL_6UZ7_242 | No text annotation | ||
| IL_6UZ7_160 | Tandem non-canonical cWW pairs | ||
| IL_6UZ7_268 | No text annotation | ||
| IL_6UZ7_161 | No text annotation | ||
| IL_6UZ7_244 | No text annotation | ||
| IL_6UZ7_245 | No text annotation | ||
| IL_6UZ7_269 | No text annotation | ||
| IL_6UZ7_175 | No text annotation | ||
| IL_6UZ7_176 | No text annotation | ||
| IL_6UZ7_246 | No text annotation | ||
| IL_6UZ7_247 | Triple non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6UZ7_001 | 1/2/41:42, 1/2/432:438, 1/2/463:465 | No text annotation | geometric J3_4V88_078 NA | |
| J3_6UZ7_026 | 1/2/41:48, 1/2/430:438, 1/2/463:465 | No text annotation | homologous J3_8P9A_069 J3_63856.2 | |
| J3_6UZ7_027 | 1/2/212:227, 1/2/236:242, 1/2/249:251 | No text annotation | ||
| J3_6UZ7_045 | 1/2/632:634, 1/2/860:865, 1/2/961:965 | No text annotation | homologous J3_8P9A_072 J3_17385.6 | |
| J3_6UZ7_046 | 1/2/760:763, 1/2/773:775, 1/2/784:789 | No text annotation | homologous J3_8P9A_073 J3_97642.3 | |
| J3_6UZ7_003 | 1/2/880:883, 1/2/927:935, 1/2/942:946 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6UZ7_004 | 1/2/1036:1038, 1/2/1078:1082, 1/2/1089:1093 | No text annotation | homologous J3_4V88_034 NA | |
| J3_6UZ7_005 | 1/2/1160:1163, 1/2/1579:1585, 1/2/1607:1614 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_6UZ7_006 | 1/2/1179:1186, 1/2/1197:1208, 1/2/1452:1456 | No text annotation | geometric J3_8C3A_040 NA | |
| J3_6UZ7_008 | 1/2/1282:1287, 1/2/1326:1331, 1/2/1417:1422 | No text annotation | homologous J3_4V88_039 NA | |
| J3_6UZ7_032 | 1/2/1291:1293, 1/2/1302:1305, 1/2/1317:1322 | No text annotation | ||
| J3_6UZ7_010 | 1/2/1335:1337, 1/2/1384:1387, 1/2/1410:1413 | No text annotation | homologous J3_4V88_040 NA | |
| J3_6UZ7_048 | 1/2/1335:1337, 1/2/1384:1389, 1/2/1405:1413 | No text annotation | homologous J3_8CRE_085 J3_88233.1 | |
| J3_6UZ7_011 | 1/5/113:123, 1/5/149:158, 1/5/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_6UZ7_035 | 1/5/113:124, 1/5/144:158, 1/5/263:267 | No text annotation | ||
| J3_6UZ7_036 | 1/5/340:356, 1/5/363:368, 1/8/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.2 | |
| J3_6UZ7_012 | 1/5/369:376, 1/5/403:404, 1/8/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6UZ7_037 | 1/5/369:379, 1/5/390:404, 1/8/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_6UZ7_013 | 1/5/473:474, 1/5/561:570, 1/5/579:584 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_6UZ7_014 | 1/5/785:791, 1/5/876:878, 1/5/894:897 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_6UZ7_015 | 1/5/800:802, 1/5/834:838, 1/5/863:866 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_6UZ7_038 | 1/5/957:958, 1/5/1033:1037, 1/5/1063:1069 | No text annotation | homologous J3_8P9A_051 J3_84137.2 | |
| J3_6UZ7_017 | 1/5/1450:1456, 1/5/1826:1828, 1/5/1840:1843 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6UZ7_018 | 1/5/1459:1462, 1/5/1806:1812, 1/5/1821:1823 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_6UZ7_019 | 1/5/1497:1502, 1/5/1560:1564, 1/5/1581:1582 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6UZ7_040 | 1/5/1508:1513, 1/5/1522:1531, 1/5/1548:1553 | No text annotation | ||
| J3_6UZ7_020 | 1/5/1596:1601, 1/5/1610:1614, 1/5/1779:1785 | No text annotation | ||
| J3_6UZ7_041 | 1/5/1623:1627, 1/5/1760:1761, 1/5/1765:1770 | No text annotation | homologous J3_8P9A_058 J3_08594.2 | |
| J3_6UZ7_021 | 1/5/2401:2404, 1/5/2481:2486, 1/5/2558:2565 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_6UZ7_042 | 1/5/2619:2621, 1/5/2722:2733, 1/5/2761:2766 | No text annotation | homologous J3_8P9A_061 J3_04772.2 | |
| J3_6UZ7_022 | 1/5/2632:2634, 1/5/2658:2660, 1/5/2669:2674 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_6UZ7_023 | 1/5/2854:2857, 1/5/2882:2884, 1/5/2898:2904 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_6UZ7_049 | 1/5/3139:3144, 1/5/3180:3188, 1/5/3233:3247 | No text annotation | ||
| J3_6UZ7_024 | 1/5/3266:3268, 1/5/3282:3286, 1/5/3356:3358 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_6UZ7_025 | 1/7/9:14, 1/7/66:67, 1/7/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_6UZ7_044 | 1/8/44:45, 1/8/58:64, 1/8/96:100 | No text annotation | geometric J3_5TBW_071 NA | |
| J4_6UZ7_001 | 1/2/99:107, 1/2/306:308, 1/2/356:360, 1/2/382:383 | No text annotation | homologous J4_8P9A_021 J4_15241.3 | |
| J4_6UZ7_002 | 1/2/621:623, 1/2/974:979, 1/2/1020:1031, 1/2/1102:1103 | No text annotation | homologous J4_8P9A_022 J4_14595.2 | |
| J4_6UZ7_004 | 1/5/112:113, 1/5/267:272, 1/5/293:299, 1/5/316:319 | No text annotation | homologous J4_8C3A_001 NA | |
| J4_6UZ7_005 | 1/5/185:189, 1/5/205:208, 1/5/212:214, 1/5/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_6UZ7_006 | 1/5/1422:1428, 1/5/1446:1447, 1/5/1846:1849, 1/5/2321:2322 | No text annotation | homologous J4_8P9A_014 J4_34212.2 | |
| J4_6UZ7_007 | 1/5/1463:1467, 1/5/1491:1496, 1/5/1583:1584, 1/5/1798:1805 | No text annotation | ||
| J4_6UZ7_008 | 1/5/1466:1467, 1/5/1491:1496, 1/5/1583:1584, 1/5/1798:1804 | No text annotation | ||
| J4_6UZ7_009 | 1/5/1643:1644, 1/5/1662:1663, 1/5/1721:1722, 1/5/1741:1742 | No text annotation | homologous J4_8P9A_016 J4_75575.2 | |
| J4_6UZ7_010 | 1/5/2099:2103, 1/5/2115:2119, 1/5/2155:2159, 1/5/2286:2291 | No text annotation | homologous J4_8P9A_017 J4_78485.2 | |
| J4_6UZ7_014 | 1/5/2161:2163, 1/5/2217:2218, 1/5/2236:2245, 1/5/2279:2284 | No text annotation | homologous J4_8P9A_018 J4_42306.2 | |
| J4_6UZ7_012 | 1/5/2622:2626, 1/5/2680:2682, 1/5/2709:2710, 1/5/2719:2721 | No text annotation | ||
| J4_6UZ7_013 | 1/5/2978:2982, 1/5/3008:3011, 1/5/3066:3069, 1/5/3101:3104 | No text annotation | ||
| J5_6UZ7_012 | 1/2/31:37, 1/2/470:478, 1/2/508:519, 1/2/531:545, 1/2/591:594 | No text annotation | ||
| J5_6UZ7_013 | 1/2/31:41, 1/2/465:478, 1/2/508:519, 1/2/531:545, 1/2/591:594 | No text annotation | ||
| J5_6UZ7_014 | 1/2/54:57, 1/2/90:97, 1/2/385:387, 1/2/408:410, 1/2/421:425 | No text annotation | homologous J5_8CRE_020 J5_58574.2 | |
| J5_6UZ7_004 | 1/2/124:141, 1/2/172:181, 1/2/202:203, 1/2/262:264, 1/2/288:292 | No text annotation | ||
| J5_6UZ7_005 | 1/2/635:640, 1/2/693:699, 1/2/739:744, 1/2/806:823, 1/2/847:859 | No text annotation | ||
| J5_6UZ7_006 | 1/5/20:22, 1/8/35:42, 1/8/102:107, 1/8/115:116, 1/8/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_6UZ7_007 | 1/5/631:636, 1/5/770:773, 1/5/912:915, 1/5/1346:1347, 1/5/1402:1408 | No text annotation | homologous J5_8P9A_011 J5_08384.2 | |
| J5_6UZ7_008 | 1/5/648:651, 1/5/675:679, 1/5/686:694, 1/5/720:722, 1/5/753:758 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_6UZ7_009 | 1/5/1875:1883, 1/5/1907:1908, 1/5/2078:2079, 1/5/2083:2091, 1/5/2300:2302 | No text annotation | homologous J5_8P9A_013 J5_99177.2 | |
| J5_6UZ7_015 | 1/5/2368:2375, 1/5/2783:2791, 1/5/2835:2844, 1/5/2919:2925, 1/5/2943:2948 | No text annotation | ||
| J5_6UZ7_011 | 1/5/2385:2388, 1/5/2579:2582, 1/5/2595:2596, 1/5/2618:2619, 1/5/2766:2772 | No text annotation | homologous J5_8P9A_015 J5_96125.2 | |
| J6_6UZ7_001 | 1/5/22:27, 1/5/58:68, 1/5/75:79, 1/5/106:110, 1/5/321:331, 1/8/32:35 | No text annotation | ||
| J6_6UZ7_002 | 1/5/2385:2388, 1/5/2579:2582, 1/5/2595:2596, 1/5/2618:2621, 1/5/2722:2733, 1/5/2761:2772 | No text annotation | ||
| J7_6UZ7_001 | 1/5/920:925, 1/5/938:939, 1/5/1085:1088, 1/5/1112:1117, 1/5/1128:1132, 1/5/1309:1310, 1/5/1336:1341 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6UZ7_028 | No text annotation | ||
| J3_6UZ7_002 | No text annotation | ||
| J3_6UZ7_029 | No text annotation | ||
| J3_6UZ7_030 | No text annotation | ||
| J3_6UZ7_007 | No text annotation | ||
| J3_6UZ7_047 | No text annotation | ||
| J3_6UZ7_031 | No text annotation | ||
| J3_6UZ7_009 | No text annotation | ||
| J3_6UZ7_033 | No text annotation | ||
| J3_6UZ7_034 | No text annotation | ||
| J3_6UZ7_016 | No text annotation | ||
| J3_6UZ7_039 | No text annotation | ||
| J3_6UZ7_043 | No text annotation | ||
| J4_6UZ7_003 | No text annotation | ||
| J4_6UZ7_011 | No text annotation | ||
| J5_6UZ7_001 | No text annotation | ||
| J5_6UZ7_002 | No text annotation | ||
| J5_6UZ7_003 | No text annotation | ||
| J5_6UZ7_010 | No text annotation |
Coloring options: