Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6Z1P_1081/Aa/54:63No text annotation
HL_6Z1P_0021/Aa/83:105No text annotation
HL_6Z1P_0031/Aa/143:150No text annotation
geometric
HL_4WF9_006
HL_48677.1
HL_6Z1P_0041/Aa/172:177No text annotation
geometric
HL_5AMQ_001
HL_89167.2
HL_6Z1P_0051/Aa/190:196No text annotation
geometric
HL_5J7L_141
NA
HL_6Z1P_0061/Aa/235:244No text annotation
geometric
HL_4V88_219
NA
HL_6Z1P_0071/Aa/250:254No text annotation
geometric
HL_4V9F_011
HL_75660.7
HL_6Z1P_0081/Aa/258:266T-loop with unstacked turn
geometric
HL_7RQB_012
NA
HL_6Z1P_1091/Ab/291:299No text annotation
HL_6Z1P_0101/Ab/317:324Pseudoknot geometry
homologous
HL_4WF9_014
HL_30680.5
HL_6Z1P_0111/Ab/365:370GNRA
homologous
HL_7A0S_015
HL_34789.4
HL_6Z1P_0121/Ab/384:407No text annotation
HL_6Z1P_0131/Ab/437:444No text annotation
homologous
HL_7RQB_017
NA
HL_6Z1P_0141/Ab/457:466T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
NA
HL_6Z1P_0151/Ab/497:516No text annotation
HL_6Z1P_0161/Ab/523:528GNRA
homologous
HL_7RQB_020
NA
HL_6Z1P_0951/Ab/592:595No text annotation
geometric
HL_4V9F_003
HL_75660.7
HL_6Z1P_0181/Ab/619:628No text annotation
homologous
HL_7RQB_023
NA
HL_6Z1P_0191/Ab/654:660No text annotation
homologous
HL_7RQB_024
NA
HL_6Z1P_0201/Ab/701:706No text annotation
homologous
HL_7RQB_025
NA
HL_6Z1P_0211/Ab/759:764No text annotation
geometric
HL_5TBW_068
NA
HL_6Z1P_0221/Ab/823:830GNRA
homologous
HL_7A0S_026
HL_34789.4
HL_6Z1P_0231/Ab/846:853No text annotation
homologous
HL_5J7L_160
NA
HL_6Z1P_0241/Ab/928:938No text annotation
homologous
HL_6PRV_001
HL_20174.1
HL_6Z1P_0251/Ab/956:963GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_98423.3
HL_6Z1P_0261/Ab/982:994No text annotation
HL_6Z1P_0271/Ab/1057:1062GNRA
geometric
HL_5J7L_004
NA
HL_6Z1P_0281/Ab/1098:1103GNRA
homologous
HL_7RQB_032
NA
HL_6Z1P_0291/Ab/1155:1163T-loop with 2 stacked bulged bases
homologous
HL_4WF9_032
HL_33597.3
HL_6Z1P_0301/Ab/1197:1203Pseudoknot geometry with 3' bulge
geometric
HL_4V9F_035
HL_49081.1
HL_6Z1P_0311/Ab/1237:1243No text annotation
geometric
HL_6D12_002
HL_89167.2
HL_6Z1P_0321/Ab/1298:1309No text annotation
HL_6Z1P_0961/Ab/1374:1381No text annotation
homologous
HL_5J7L_173
NA
HL_6Z1P_0971/Ab/1392:1398GNRA
homologous
HL_5J7L_174
NA
HL_6Z1P_0351/Ab/1453:1458No text annotation
homologous
HL_7RQB_042
NA
HL_6Z1P_0361/Ab/1471:1475No text annotation
geometric
HL_7RQB_011
NA
HL_6Z1P_0981/Ab/1504:1514No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_6Z1P_0381/Ab/1525:1548No text annotation
HL_6Z1P_0391/Ab/1592:1597GNRA
homologous
HL_7RQB_047
NA
HL_6Z1P_0401/Ab/1629:1639No text annotation
homologous
HL_9DFE_046
HL_82185.1
HL_6Z1P_0411/Ab/1668:1676No text annotation
homologous
HL_7RQB_049
NA
HL_6Z1P_0421/Ab/1746:1755No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_6Z1P_1001/Ab/1897:1914No text annotation
HL_6Z1P_0451/Ab/1942:1950No text annotation
homologous
HL_7A0S_052
HL_11974.2
HL_6Z1P_0461/Ab/1958:1970No text annotation
homologous
HL_7RQB_054
NA
HL_6Z1P_1011/Ab/1998:2006No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_6Z1P_0481/Ab/2018:2025Pseudoknot geometry
geometric
HL_7RQB_056
NA
HL_6Z1P_1021/Ab/2049:2056GNRA with extra cWW
homologous
HL_4WF9_053
HL_87268.2
HL_6Z1P_0501/Ab/2068:2073No text annotation
HL_6Z1P_0511/Ab/2098:2107Pseudoknot geometry
geometric
HL_4GXY_003
HL_97725.1
HL_6Z1P_0521/Ab/2165:2173No text annotation
homologous
HL_4WF9_056
HL_52011.1
HL_6Z1P_0531/Ab/2221:2230tRNA anticodon loop
geometric
HL_3W3S_002
HL_81376.3
HL_6Z1P_0541/Ab/2245:2251No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_6Z1P_0551/Ab/2288:2293GNRA
homologous
HL_5J7L_196
NA
HL_6Z1P_0561/Ab/2352:2357GNRA
geometric
HL_4V9F_066
HL_34789.4
HL_6Z1P_0571/Ab/2395:2404tRNA anticodon loop
geometric
HL_4LCK_002
HL_11974.2
HL_6Z1P_0581/Ab/2442:2457No text annotation
HL_6Z1P_1031/Ab/2496:2504No text annotation
homologous
HL_7A0S_067
HL_37889.1
HL_6Z1P_0601/Ab/2523:2548No text annotation
HL_6Z1P_0611/Ba/38:48No text annotation
HL_6Z1P_0621/Ba/104:114No text annotation
geometric
HL_8KAH_003
NA
HL_6Z1P_1041/Ba/166:180No text annotation
HL_6Z1P_0631/Ba/169:177T-loop related
geometric
HL_5T83_003
HL_61418.2
HL_6Z1P_0641/Ba/187:197Pseudoknot geometry
geometric
HL_3IGI_005
HL_52651.2
HL_6Z1P_1101/Bb/280:283No text annotation
HL_6Z1P_0661/Bb/321:326GNRA
homologous
HL_6CZR_078
NA
HL_6Z1P_0671/Bb/346:358No text annotation
HL_6Z1P_0681/Bb/364:370No text annotation
geometric
HL_5J7L_018
NA
HL_6Z1P_0691/Bb/399:404GNRA
homologous
HL_4LFB_010
HL_34789.4
HL_6Z1P_0701/Bb/439:444No text annotation
geometric
HL_4WF9_003
HL_75660.7
HL_6Z1P_0711/Bb/471:478No text annotation
geometric
HL_5TBW_044
NA
HL_6Z1P_0721/Bb/517:522Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_6Z1P_0731/Bb/600:621No text annotation
HL_6Z1P_0741/Bb/679:688No text annotation
homologous
HL_5J7L_015
NA
HL_6Z1P_0751/Bb/716:721GNRA
homologous
HL_5J7L_016
NA
HL_6Z1P_0761/Bb/775:785No text annotation
geometric
HL_2ZNI_001
HL_75660.7
HL_6Z1P_0771/Bb/824:830No text annotation
HL_6Z1P_0781/Bb/842:847GNRA
homologous
HL_5J7L_019
NA
HL_6Z1P_0791/Bb/875:880GNRA
homologous
HL_6CZR_091
NA
HL_6Z1P_0801/Bb/941:950No text annotation
homologous
HL_5J7L_021
NA
HL_6Z1P_1111/Bb/991:998GNRA wlth tandem sheared
geometric
HL_5D8H_002
HL_98423.3
HL_6Z1P_0821/Bb/1049:1054GNRA
homologous
HL_5J7L_023
NA
HL_6Z1P_0831/Bb/1062:1069T-loop related
homologous
HL_5J7L_024
NA
HL_6Z1P_0841/Bb/1113:1123No text annotation
HL_6Z1P_1061/Bb/1164:1171Mini UNCG
geometric
HL_4OOG_001
HL_12626.2
HL_6Z1P_0861/Bb/1277:1282GNRA
homologous
HL_4LFB_028
HL_34789.4
HL_6Z1P_0871/Bb/1325:1334T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_93658.1
HL_6Z1P_0881/Bb/1366:1378No text annotation
HL_6Z1P_0891/Bb/1475:1483No text annotation
geometric
HL_5TBW_021
NA
HL_6Z1P_0901/Bb/1501:1510No text annotation
HL_6Z1P_0911/Bb/1583:1588GNRA
homologous
HL_6CZR_103
NA

Problematic loops

#loop idProblemSequence
HL_6Z1P_001No text annotation
HL_6Z1P_092tRNA anticodon loop
HL_6Z1P_009No text annotation
HL_6Z1P_093No text annotation
HL_6Z1P_094No text annotation
HL_6Z1P_017No text annotation
HL_6Z1P_033No text annotation
HL_6Z1P_034GNRA with extra cWW
HL_6Z1P_037No text annotation
HL_6Z1P_099No text annotation
HL_6Z1P_043No text annotation
HL_6Z1P_044No text annotation
HL_6Z1P_047No text annotation
HL_6Z1P_049No text annotation
HL_6Z1P_059No text annotation
HL_6Z1P_065No text annotation
HL_6Z1P_105No text annotation
HL_6Z1P_081No text annotation
HL_6Z1P_085UNCG variation
HL_6Z1P_107No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6Z1P_0011/Aa/5:7,
1/Ab/2573:2574
Single bulged U
geometric
IL_3NDB_005
NA
IL_6Z1P_0021/Aa/25:31,
1/Ab/408:414
Triple sheared with non-canonical cWW
homologous
IL_5J7L_245
NA
IL_6Z1P_1441/Aa/31:32,
1/Ab/377:408
No text annotation
IL_6Z1P_0031/Aa/73:75,
1/Aa/116:117
Single bulged U
geometric
IL_6MWN_006
IL_97561.3
IL_6Z1P_0041/Aa/77:81,
1/Aa/107:114
Kink-turn
geometric
IL_4V9F_004
IL_71972.1
IL_6Z1P_0051/Aa/137:142,
1/Aa/151:157
7x6 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_007
NA
IL_6Z1P_0061/Aa/185:189,
1/Aa/197:202
No text annotation
IL_6Z1P_0071/Ab/455:457,
1/Ab/466:468
Isolated non-canonical cWW pair
homologous
IL_5J7L_257
NA
IL_6Z1P_0081/Ab/553:555,
1/Ab/681:683
No text annotation
homologous
IL_7RQB_017
NA
IL_6Z1P_0091/Ab/555:559,
1/Ab/674:681
tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_6Z1P_1451/Ab/578:579,
1/Ab/638:640
Single bulged A
homologous
IL_5J7L_261
NA
IL_6Z1P_0111/Ab/583:584,
1/Ab/603:605
Single bulged G
geometric
IL_4V9F_026
IL_28408.2
IL_6Z1P_1461/Ab/583:587,
1/Ab/600:605
Triple sheared
homologous
IL_4WF9_024
IL_15190.2
IL_6Z1P_0121/Ab/584:587,
1/Ab/600:603
Double sheared
geometric
IL_5J7L_256
NA
IL_6Z1P_0131/Ab/613:616,
1/Ab/631:633
Major groove platform with extra cWW
homologous
IL_7RQB_022
NA
IL_6Z1P_0141/Ab/650:652,
1/Ab/662:666
Multiple bulged bases
geometric
IL_4V9F_030
IL_57881.1
IL_6Z1P_1761/Ab/712:713,
1/Ab/808:810
Single stack bend
homologous
IL_5J7L_266
NA
IL_6Z1P_1771/Ab/718:723,
1/Ab/800:803
No text annotation
IL_6Z1P_1471/Ab/731:743,
1/Ab/780:792
No text annotation
IL_6Z1P_0171/Ab/746:749,
1/Ab/774:777
No text annotation
geometric
IL_4V9F_036
IL_02203.1
IL_6Z1P_1781/Ab/749:753,
1/Ab/770:774
Double sheared with non-canonical cWW
homologous
IL_5J7L_274
NA
IL_6Z1P_0191/Ab/819:821,
1/Ab/832:834
No text annotation
homologous
IL_7RQB_034
NA
IL_6Z1P_0201/Ab/861:864,
1/Ab/1050:1052
Isolated non-canonical cWW pair
geometric
IL_5J7L_009
NA
IL_6Z1P_1791/Ab/866:870,
1/Ab/1044:1048
UAA/GAN
homologous
IL_4WF9_036
IL_08938.1
IL_6Z1P_0221/Ab/872:873,
1/Ab/1027:1042
No text annotation
IL_6Z1P_1501/Ab/875:896,
1/Ab/1013:1025
No text annotation
IL_6Z1P_0231/Ab/903:906,
1/Ab/1003:1006
Tandem non-canonical cWW pairs
geometric
IL_3R2D_002
IL_71194.2
IL_6Z1P_1511/Ab/903:908,
1/Ab/1002:1006
Triple non-canonical cWW pairs
geometric
IL_8S95_002
IL_71154.3
IL_6Z1P_0241/Ab/906:908,
1/Ab/1002:1003
Single bulged U
geometric
IL_5TBW_086
NA
IL_6Z1P_0251/Ab/923:926,
1/Ab/940:943
No text annotation
homologous
IL_6PRV_001
IL_28482.1
IL_6Z1P_0261/Ab/951:954,
1/Ab/965:966
Major groove platform
geometric
IL_3NKB_002
IL_48076.8
IL_6Z1P_0271/Ab/1075:1079,
1/Ab/1120:1125
No text annotation
geometric
IL_4V88_422
NA
IL_6Z1P_0281/Ab/1081:1085,
1/Ab/1115:1118
No text annotation
homologous
IL_5J7L_287
NA
IL_6Z1P_0291/Ab/1086:1091,
1/Ab/1110:1114
No text annotation
IL_6Z1P_0301/Ab/1137:1144,
1/Ab/1730:1736
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_6Z1P_0311/Ab/1177:1179,
1/Ab/1385:1387
Isolated non-canonical cWW pair
geometric
IL_5TBW_115
NA
IL_6Z1P_0321/Ab/1193:1197,
1/Ab/1203:1207
No text annotation
IL_6Z1P_0331/Ab/1225:1229,
1/Ab/1250:1254
UAA/GAN
homologous
IL_4WF9_051
IL_89021.4
IL_6Z1P_0341/Ab/1231:1236,
1/Ab/1244:1248
No text annotation
IL_6Z1P_0351/Ab/1259:1260,
1/Ab/1355:1360
No text annotation
IL_6Z1P_1801/Ab/1269:1273,
1/Ab/1336:1346
No text annotation
IL_6Z1P_0371/Ab/1274:1278,
1/Ab/1332:1335
No text annotation
IL_6Z1P_0381/Ab/1414:1419,
1/Ab/1722:1724
No text annotation
IL_6Z1P_0391/Ab/1425:1427,
1/Ab/1714:1716
Isolated tWW turn
homologous
IL_4WF9_063
IL_10432.1
IL_6Z1P_0401/Ab/1428:1431,
1/Ab/1712:1713
Major groove platform; stack outside cWW
homologous
IL_4WF9_064
IL_74641.2
IL_6Z1P_1531/Ab/1428:1436,
1/Ab/1709:1713
No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_6Z1P_0411/Ab/1431:1436,
1/Ab/1709:1712
Intercalated tWH
geometric
IL_4WF9_065
IL_28217.1
IL_6Z1P_0421/Ab/1448:1453,
1/Ab/1458:1464
tSH-tSH-tHH-tHS
geometric
IL_5TBW_078
NA
IL_6Z1P_0431/Ab/1470:1471,
1/Ab/1475:1477
Single bulged A
geometric
IL_4WF9_022
IL_14190.2
IL_6Z1P_0441/Ab/1497:1498,
1/Ab/1699:1701
Single bulged A
homologous
IL_7RQB_069
NA
IL_6Z1P_0451/Ab/1564:1567,
1/Ab/1621:1622
Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_6Z1P_1541/Ab/1564:1569,
1/Ab/1617:1622
No text annotation
IL_6Z1P_0461/Ab/1567:1569,
1/Ab/1617:1621
No text annotation
IL_6Z1P_0471/Ab/1572:1576,
1/Ab/1612:1614
Major groove minor groove platform with extra cWW
geometric
IL_4WF9_012
IL_34117.1
IL_6Z1P_1551/Ab/1578:1584,
1/Ab/1605:1610
No text annotation
IL_6Z1P_0491/Ab/1652:1653,
1/Ab/1683:1686
Bulged stacked bases
geometric
IL_4V9F_070
IL_24886.2
IL_6Z1P_0501/Ab/1653:1664,
1/Ab/1680:1683
No text annotation
homologous
IL_4WF9_077
IL_84014.1
IL_6Z1P_0511/Ab/1742:1744,
1/Ab/1757:1759
Isolated non-canonical cWW pair
geometric
IL_5TBW_008
NA
IL_6Z1P_0521/Ab/1769:1771,
1/Ab/2311:2312
Major groove platform
homologous
IL_5J7L_320
NA
IL_6Z1P_0531/Ab/1773:1775,
1/Ab/2306:2309
No text annotation
geometric
IL_5J7L_321
NA
IL_6Z1P_0541/Ab/1786:1788,
1/Ab/2136:2137
Single bulged U
homologous
IL_7RQB_080
NA
IL_6Z1P_1571/Ab/1786:1790,
1/Ab/2132:2137
No text annotation
IL_6Z1P_0551/Ab/1789:1790,
1/Ab/2132:2135
Minor groove platform
homologous
IL_7RQB_081
NA
IL_6Z1P_0561/Ab/1800:1803,
1/Ab/1929:1933
tSH-tHW
geometric
IL_7RQB_011
NA
IL_6Z1P_0571/Ab/1804:1806,
1/Ab/1926:1928
No text annotation
homologous
IL_7RQB_083
NA
IL_6Z1P_1811/Ab/2094:2096,
1/Ab/2109:2110
No text annotation
IL_6Z1P_0591/Ab/2147:2148,
1/Ab/2192:2194
Single stack bend
geometric
IL_4WF9_089
IL_15011.2
IL_6Z1P_0601/Ab/2148:2149,
1/Ab/2190:2192
Major groove platform
homologous
IL_7RQB_092
NA
IL_6Z1P_0611/Ab/2151:2153,
1/Ab/2187:2188
Major groove platform
geometric
IL_4WF9_091
IL_48076.8
IL_6Z1P_1591/Ab/2151:2155,
1/Ab/2183:2188
No text annotation
IL_6Z1P_0621/Ab/2153:2155,
1/Ab/2183:2187
Major groove minor groove platform with extra cWW
homologous
IL_4WF9_092
IL_36931.2
IL_6Z1P_0631/Ab/2160:2164,
1/Ab/2174:2178
Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_6Z1P_0641/Ab/2201:2202,
1/Ab/2274:2276
Major groove platform
homologous
IL_7A0S_088
IL_46637.2
IL_6Z1P_0651/Ab/2204:2206,
1/Ab/2268:2272
Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
NA
IL_6Z1P_0661/Ab/2206:2207,
1/Ab/2265:2268
No text annotation
homologous
IL_4WF9_096
IL_44609.2
IL_6Z1P_0671/Ab/2216:2217,
1/Ab/2234:2237
Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_6Z1P_0681/Ab/2285:2286,
1/Ab/2295:2297
Single bulged A
homologous
IL_5J7L_344
NA
IL_6Z1P_1601/Ab/2331:2333,
1/Ab/2473:2476
Decoding loop related
geometric
IL_2O3X_003
IL_53541.1
IL_6Z1P_0701/Ab/2341:2344,
1/Ab/2364:2367
Double sheared
geometric
IL_3D0U_002
IL_58355.2
IL_6Z1P_0711/Ab/2346:2352,
1/Ab/2357:2362
Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7A0S_094
IL_16458.6
IL_6Z1P_0721/Ab/2374:2378,
1/Ab/2423:2425
C-loop
homologous
IL_4WF9_101
IL_63596.12
IL_6Z1P_0731/Ab/2389:2390,
1/Ab/2409:2412
Multiple bulged bases
homologous
IL_4WF9_103
IL_44609.2
IL_6Z1P_1611/Ab/2435:2439,
1/Ab/2460:2464
UAA/GAN
geometric
IL_7A0S_033
IL_08938.1
IL_6Z1P_0751/Ab/2492:2495,
1/Ab/2505:2508
Tandem non-canonical cWW pairs
geometric
IL_7A0S_040
IL_71194.2
IL_6Z1P_0761/Ab/2509:2514,
1/Ab/2557:2560
No text annotation
IL_6Z1P_0771/Ba/54:56,
1/Bb/548:550
Isolated non-canonical cWW pair
geometric
IL_6IA2_005
IL_01003.3
IL_6Z1P_1621/Ba/56:58,
1/Bb/547:548
No text annotation
IL_6Z1P_0791/Ba/69:71,
1/Bb/416:419
Isolated cWS basepair
geometric
IL_7A0S_041
IL_42997.5
IL_6Z1P_0801/Ba/73:78,
1/Bb/379:381
No text annotation
geometric
IL_6CZR_115
NA
IL_6Z1P_0811/Ba/80:82,
1/Bb/376:377
Minor groove platform
homologous
IL_6CZR_116
NA
IL_6Z1P_0821/Ba/89:92,
1/Ba/125:126
Multiple bulged bases
geometric
IL_5J7L_005
NA
IL_6Z1P_0831/Ba/95:98,
1/Ba/121:122
Single stack bend
geometric
IL_5TBW_070
NA
IL_6Z1P_0841/Ba/98:99,
1/Ba/119:121
Single stack bend
geometric
IL_7A0S_005
IL_15011.2
IL_6Z1P_0851/Ba/149:152,
1/Bb/238:240
Other IL
geometric
IL_5TBW_064
NA
IL_6Z1P_0861/Ba/154:158,
1/Bb/233:236
No text annotation
homologous
IL_4LFB_008
IL_60988.2
IL_6Z1P_0871/Ba/166:169,
1/Ba/177:180
Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
NA
IL_6Z1P_0881/Ba/205:206,
1/Bb/220:223
Multiple bulged bases
geometric
IL_4LFB_005
IL_71421.2
IL_6Z1P_0891/Bb/248:253,
1/Bb/303:309
No text annotation
IL_6Z1P_0901/Bb/255:259,
1/Bb/299:301
No text annotation
homologous
IL_6CZR_124
NA
IL_6Z1P_0911/Bb/263:264,
1/Bb/292:295
Multiple bulged bases
geometric
IL_3MXH_004
IL_71421.2
IL_6Z1P_1651/Bb/268:276,
1/Bb/287:288
No text annotation
IL_6Z1P_0931/Bb/317:318,
1/Bb/329:333
C-loop
homologous
IL_5J7L_016
NA
IL_6Z1P_0941/Bb/342:344,
1/Bb/360:361
Single bulged C
geometric
IL_3SNP_003
IL_05642.2
IL_6Z1P_0951/Bb/387:389,
1/Bb/412:413
Single bulged U
geometric
IL_5J7L_017
NA
IL_6Z1P_1821/Bb/391:396,
1/Bb/407:410
No text annotation
IL_6Z1P_0971/Bb/429:436,
1/Bb/447:453
No text annotation
homologous
IL_4LFB_017
IL_62329.1
IL_6Z1P_1831/Bb/467:470,
1/Bb/479:482
No text annotation
IL_6Z1P_0991/Bb/498:505,
1/Bb/535:536
Multiple bulged bases
geometric
IL_5WLH_001
IL_71421.2
IL_6Z1P_1001/Bb/505:507,
1/Bb/534:535
Single bulged A
geometric
IL_7JJU_004
IL_14190.2
IL_6Z1P_1011/Bb/510:516,
1/Bb/523:531
Kink-turn related
geometric
IL_4V88_415
NA
IL_6Z1P_1021/Bb/575:579,
1/Bb/746:750
tSH-tHW-tHS
homologous
IL_6CZR_135
NA
IL_6Z1P_1841/Bb/584:585,
1/Bb/638:640
Single bulged A
geometric
IL_4LGT_002
IL_14190.2
IL_6Z1P_1041/Bb/590:593,
1/Bb/628:633
No text annotation
IL_6Z1P_1051/Bb/596:599,
1/Bb/622:625
Tandem non-canonical cWW pairs
geometric
IL_5C5W_001
IL_71194.2
IL_6Z1P_1691/Bb/644:645,
1/Bb/740:743
Major groove platform; stack outside cWW
homologous
IL_5J7L_031
NA
IL_6Z1P_1071/Bb/654:656,
1/Bb/730:731
Single bulged A
geometric
IL_1U63_004
IL_14190.2
IL_6Z1P_1081/Bb/659:661,
1/Bb/725:727
Isolated non-canonical cWW pair
geometric
IL_5VCI_002
IL_01003.3
IL_6Z1P_1091/Bb/665:667,
1/Bb/704:705
Single stack bend
geometric
IL_4V9F_081
IL_15011.2
IL_6Z1P_1851/Bb/665:668,
1/Bb/702:705
Tandem non-canonical cWW pairs
geometric
IL_4K27_001
IL_15225.2
IL_6Z1P_1101/Bb/667:668,
1/Bb/702:704
Single stack bend
geometric
IL_5TBW_070
NA
IL_6Z1P_1111/Bb/673:678,
1/Bb/689:697
No text annotation
IL_6Z1P_1121/Bb/763:768,
1/Bb/792:794
Other IL
geometric
IL_4V88_435
NA
IL_6Z1P_1131/Bb/768:773,
1/Bb/787:792
tSH-tHW-tHS-cWW
geometric
IL_3LQX_002
IL_35186.2
IL_6Z1P_1141/Bb/818:820,
1/Bb/834:837
Isolated non-canonical cWW pair
geometric
IL_3TD0_005
NA
IL_6Z1P_1151/Bb/865:872,
1/Bb/883:888
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_84044.1
IL_6Z1P_1161/Bb/903:905,
1/Bb/1401:1402
Single bulged G
homologous
IL_5J7L_040
NA
IL_6Z1P_1171/Bb/931:932,
1/Bb/1238:1240
Minor groove platform
homologous
IL_4LFB_038
IL_34520.3
IL_6Z1P_1181/Bb/976:979,
1/Bb/1012:1015
Tandem non-canonical cWW pairs
geometric
IL_6MWN_005
IL_71194.2
IL_6Z1P_1861/Bb/981:984,
1/Bb/1006:1010
No text annotation
IL_6Z1P_1871/Bb/987:989,
1/Bb/1000:1003
No text annotation
IL_6Z1P_1211/Bb/1021:1023,
1/Bb/1220:1221
Single bulged A
geometric
IL_6WPI_001
IL_14190.2
IL_6Z1P_1221/Bb/1025:1029,
1/Bb/1216:1218
Isolated cWS basepair
geometric
IL_4V88_450
NA
IL_6Z1P_1711/Bb/1025:1031,
1/Bb/1211:1218
No text annotation
geometric
IL_4V88_510
NA
IL_6Z1P_1231/Bb/1029:1031,
1/Bb/1211:1216
Minor groove platform with extra cWW
geometric
IL_4V88_451
NA
IL_6Z1P_1241/Bb/1033:1034,
1/Bb/1207:1209
Single bulged A
geometric
IL_5J7L_049
NA
IL_6Z1P_1251/Bb/1034:1036,
1/Bb/1205:1207
Isolated non-canonical cWW pair
geometric
IL_5TBW_016
NA
IL_6Z1P_1881/Bb/1099:1104,
1/Bb/1132:1135
No text annotation
IL_6Z1P_1271/Bb/1108:1110,
1/Bb/1126:1128
Isolated non-canonical cWW pair
geometric
IL_4P3T_001
NA
IL_6Z1P_1281/Bb/1150:1153,
1/Bb/1182:1184
No text annotation
IL_6Z1P_1291/Bb/1161:1163,
1/Bb/1172:1174
Isolated non-canonical cWW pair
geometric
IL_7A0S_107
IL_71625.3
IL_6Z1P_1891/Bb/1257:1265,
1/Bb/1296:1303
No text annotation
IL_6Z1P_1301/Bb/1267:1270,
1/Bb/1289:1294
180 degree turn
homologous
IL_5J7L_055
NA
IL_6Z1P_1731/Bb/1271:1275,
1/Bb/1284:1288
Double sheared with non-canonical cWW
homologous
IL_5J7L_056
NA
IL_6Z1P_1321/Bb/1314:1319,
1/Bb/1340:1345
No text annotation
homologous
IL_4LFB_055
IL_57885.2
IL_6Z1P_1331/Bb/1410:1412,
1/Bb/1569:1572
No text annotation
geometric
IL_5J7L_058
NA
IL_6Z1P_1341/Bb/1412:1415,
1/Bb/1565:1569
No text annotation
geometric
IL_4V88_464
NA
IL_6Z1P_1351/Bb/1416:1418,
1/Bb/1562:1564
Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_6Z1P_1361/Bb/1418:1420,
1/Bb/1559:1562
Isolated non-canonical cWW pair
geometric
IL_5J7L_009
NA
IL_6Z1P_1371/Bb/1427:1430,
1/Bb/1549:1552
Double sheared
homologous
IL_6CZR_169
NA
IL_6Z1P_1741/Bb/1436:1438,
1/Bb/1541:1543
Isolated non-canonical cWW pair
homologous
IL_4LFB_061
NA
IL_6Z1P_1391/Bb/1440:1446,
1/Bb/1534:1539
No text annotation
IL_6Z1P_1401/Bb/1448:1450,
1/Bb/1530:1532
Isolated non-canonical cWW pair
geometric
IL_3RW6_004
IL_01003.3
IL_6Z1P_1411/Bb/1450:1457,
1/Bb/1522:1530
9x8 Sarcin-Ricin with GA cWW pair; G-bulge
geometric
IL_3D0U_003
IL_34470.3
IL_6Z1P_1751/Bb/1450:1459,
1/Bb/1519:1530
No text annotation
IL_6Z1P_1421/Bb/1457:1459,
1/Bb/1519:1522
No text annotation
geometric
IL_6ZDU_001
NA
IL_6Z1P_1431/Bb/1459:1464,
1/Bb/1513:1519
No text annotation

Problematic loops

#loop idProblemSequence
IL_6Z1P_010Isolated cWH basepair
IL_6Z1P_015No text annotation
IL_6Z1P_016No text annotation
IL_6Z1P_018No text annotation
IL_6Z1P_021No text annotation
IL_6Z1P_148UAA/GAN with extra cWW
IL_6Z1P_149No text annotation
IL_6Z1P_036No text annotation
IL_6Z1P_152No text annotation
IL_6Z1P_048No text annotation
IL_6Z1P_156No text annotation
IL_6Z1P_158Isolated non-canonical cWW with bulges
IL_6Z1P_058Tandem non-canonical cWW pairs
IL_6Z1P_069No text annotation
IL_6Z1P_074UAA/GAN with extra cWW
IL_6Z1P_078Isolated cWH basepair
IL_6Z1P_163No text annotation
IL_6Z1P_164No text annotation
IL_6Z1P_092No text annotation
IL_6Z1P_096No text annotation
IL_6Z1P_098No text annotation
IL_6Z1P_166No text annotation
IL_6Z1P_167Isolated non-canonical cWW pair
IL_6Z1P_168Isolated non-canonical cWW pair
IL_6Z1P_103Tandem non-canonical cWW pairs
IL_6Z1P_106No text annotation
IL_6Z1P_170Triple non-canonical cWW pairs
IL_6Z1P_119No text annotation
IL_6Z1P_120No text annotation
IL_6Z1P_126No text annotation
IL_6Z1P_172No text annotation
IL_6Z1P_131No text annotation
IL_6Z1P_138Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6Z1P_0011/Aa/31:32,
1/Ab/377:384,
1/Ab/407:408
No text annotation
geometric
J3_4WF9_010
J3_68715.1
J3_6Z1P_0241/Aa/33:36,
1/Ab/349:364,
1/Ab/371:376
No text annotation
geometric
J3_7A0S_016
J3_07616.1
J3_6Z1P_0021/Aa/50:51,
1/Aa/66:71,
1/Aa/119:123
No text annotation
J3_6Z1P_0251/Aa/228:232,
1/Aa/247:256,
1/Aa/268:272
No text annotation
geometric
J3_5J7L_068
NA
J3_6Z1P_0261/Ab/492:495,
1/Ab/518:522,
1/Ab/529:537
No text annotation
J3_6Z1P_0401/Ab/564:570,
1/Ab/648:650,
1/Ab/666:669
No text annotation
homologous
J3_5J7L_038
NA
J3_6Z1P_0041/Ab/579:581,
1/Ab/607:611,
1/Ab/635:638
No text annotation
homologous
J3_7RQB_005
NA
J3_6Z1P_0281/Ab/909:913,
1/Ab/974:978,
1/Ab/998:1001
No text annotation
J3_6Z1P_0061/Ab/916:921,
1/Ab/945:951,
1/Ab/966:971
No text annotation
J3_6Z1P_0411/Ab/918:921,
1/Ab/945:954,
1/Ab/965:969
No text annotation
J3_6Z1P_0071/Ab/1172:1177,
1/Ab/1387:1390,
1/Ab/1400:1404
No text annotation
geometric
J3_4WF9_005
J3_68164.1
J3_6Z1P_0081/Ab/1180:1183,
1/Ab/1368:1373,
1/Ab/1382:1384
No text annotation
geometric
J3_8OI5_013
J3_76012.1
J3_6Z1P_0091/Ab/1184:1189,
1/Ab/1211:1220,
1/Ab/1363:1367
No text annotation
J3_6Z1P_0101/Ab/1220:1224,
1/Ab/1255:1259,
1/Ab/1360:1363
No text annotation
J3_6Z1P_0111/Ab/1810:1812,
1/Ab/1889:1894,
1/Ab/1917:1922
No text annotation
J3_6Z1P_0311/Ab/1976:1978,
1/Ab/2078:2089,
1/Ab/2115:2121
No text annotation
homologous
J3_5J7L_070
NA
J3_6Z1P_0421/Ab/1989:1993,
1/Ab/2011:2017,
1/Ab/2026:2031
No text annotation
J3_6Z1P_0141/Ab/2211:2214,
1/Ab/2239:2241,
1/Ab/2255:2261
No text annotation
homologous
J3_4WF9_009
J3_32601.6
J3_6Z1P_0151/Ab/2490:2492,
1/Ab/2508:2509,
1/Ab/2560:2563
No text annotation
J3_6Z1P_0321/Ab/2490:2492,
1/Ab/2508:2514,
1/Ab/2557:2563
No text annotation
J3_6Z1P_0161/Ba/72:73,
1/Bb/381:387,
1/Bb/413:415
No text annotation
homologous
J3_6CZR_015
NA
J3_6Z1P_0331/Ba/72:78,
1/Bb/379:387,
1/Bb/413:415
No text annotation
geometric
J3_4LFB_014
J3_63856.1
J3_6Z1P_0171/Bb/581:583,
1/Bb/641:644,
1/Bb/743:744
No text annotation
geometric
J3_8P9A_071
J3_01633.1
J3_6Z1P_0181/Bb/662:663,
1/Bb/707:715,
1/Bb/722:724
No text annotation
J3_6Z1P_0191/Bb/815:817,
1/Bb/838:841,
1/Bb/848:852
No text annotation
J3_6Z1P_0351/Bb/911:917,
1/Bb/1355:1361,
1/Bb/1383:1395
No text annotation
J3_6Z1P_0431/Bb/921:924,
1/Bb/1247:1249,
1/Bb/1348:1351
No text annotation
homologous
J3_4LFB_003
J3_44359.1
J3_6Z1P_0201/Bb/933:940,
1/Bb/951:962,
1/Bb/1233:1237
No text annotation
homologous
J3_5J7L_006
NA
J3_6Z1P_0211/Bb/968:974,
1/Bb/1017:1021,
1/Bb/1221:1227
No text annotation
J3_6Z1P_0221/Bb/1036:1041,
1/Bb/1082:1088,
1/Bb/1199:1205
No text annotation
homologous
J3_4LFB_007
J3_01343.1
J3_6Z1P_0231/Bb/1046:1047,
1/Bb/1056:1060,
1/Bb/1071:1077
No text annotation
homologous
J3_5J7L_009
NA
J3_6Z1P_0441/Bb/1091:1092,
1/Bb/1142:1146,
1/Bb/1188:1196
No text annotation
J3_6Z1P_0381/Bb/1249:1253,
1/Bb/1307:1314,
1/Bb/1345:1348
No text annotation
homologous
J3_4LFB_009
J3_03192.1
J3_6Z1P_0391/Bb/1459:1467,
1/Bb/1491:1501,
1/Bb/1510:1519
No text annotation
J4_6Z1P_0011/Aa/228:232,
1/Aa/247:250,
1/Aa/254:256,
1/Aa/268:272
No text annotation
J4_6Z1P_0021/Ab/1145:1150,
1/Ab/1168:1169,
1/Ab/1407:1410,
1/Ab/1728:1729
No text annotation
homologous
J4_7A0S_004
J4_64571.6
J4_6Z1P_0031/Ab/1184:1188,
1/Ab/1212:1224,
1/Ab/1255:1260,
1/Ab/1355:1367
No text annotation
J4_6Z1P_0041/Ab/1436:1445,
1/Ab/1467:1469,
1/Ab/1478:1491,
1/Ab/1707:1709
No text annotation
J4_6Z1P_0051/Ab/1499:1503,
1/Ab/1515:1519,
1/Ab/1554:1557,
1/Ab/1694:1698
No text annotation
homologous
J4_5J7L_025
NA
J4_6Z1P_0121/Ab/1560:1562,
1/Ab/1624:1625,
1/Ab/1643:1653,
1/Ab/1683:1691
No text annotation
J4_6Z1P_0131/Ab/1979:1983,
1/Ab/2037:2041,
1/Ab/2064:2066,
1/Ab/2075:2077
No text annotation
homologous
J4_5J7L_027
NA
J4_6Z1P_0081/Ab/2337:2340,
1/Ab/2368:2370,
1/Ab/2429:2433,
1/Ab/2466:2469
No text annotation
J4_6Z1P_0091/Ba/137:145,
1/Bb/244:246,
1/Bb/311:314,
1/Bb/336:337
No text annotation
J4_6Z1P_0101/Ba/165:166,
1/Ba/180:186,
1/Ba/198:203,
1/Bb/225:226
No text annotation
J4_6Z1P_0111/Bb/564:572,
1/Bb/753:758,
1/Bb/799:810,
1/Bb/857:859
No text annotation
J5_6Z1P_0011/Ab/428:430,
1/Ab/451:455,
1/Ab/468:470,
1/Ab/1136:1137,
1/Ab/1736:1737
No text annotation
homologous
J5_5J7L_014
NA
J5_6Z1P_0021/Ab/475:480,
1/Ab/549:552,
1/Ab/684:687,
1/Ab/1074:1075,
1/Ab/1125:1131
No text annotation
homologous
J5_4WF9_004
J5_74302.6
J5_6Z1P_0031/Ab/1777:1783,
1/Ab/2140:2148,
1/Ab/2192:2200,
1/Ab/2277:2282,
1/Ab/2300:2304
No text annotation
J5_6Z1P_0041/Ab/1793:1796,
1/Ab/1937:1940,
1/Ab/1952:1953,
1/Ab/1975:1976,
1/Ab/2121:2129
No text annotation
homologous
J5_4WF9_007
J5_39529.2
J5_6Z1P_0051/Ba/62:65,
1/Bb/423:426,
1/Bb/456:463,
1/Bb/486:494,
1/Bb/540:543
No text annotation
J5_6Z1P_0071/Ba/84:87,
1/Ba/128:135,
1/Bb/339:341,
1/Bb/362:363,
1/Bb/371:374
No text annotation
J6_6Z1P_0021/Aa/46:48,
1/Aa/125:132,
1/Aa/162:171,
1/Aa/178:182,
1/Aa/205:209,
1/Ab/332:339
No text annotation
J7_6Z1P_0031/Aa/10:18,
1/Ab/421:428,
1/Ab/1737:1744,
1/Ab/1757:1762,
1/Ab/2319:2324,
1/Ab/2483:2488,
1/Ab/2565:2570
No text annotation
J7_6Z1P_0041/Ab/692:697,
1/Ab/710:711,
1/Ab/811:814,
1/Ab/839:844,
1/Ab/855:859,
1/Ab/1054:1055,
1/Ab/1064:1069
No text annotation

Problematic loops

#loop idProblemSequence
J3_6Z1P_003No text annotation
J3_6Z1P_027No text annotation
J3_6Z1P_005No text annotation
J3_6Z1P_029No text annotation
J3_6Z1P_030No text annotation
J3_6Z1P_012No text annotation
J3_6Z1P_013No text annotation
J3_6Z1P_034No text annotation
J3_6Z1P_036No text annotation
J3_6Z1P_037No text annotation
J4_6Z1P_006No text annotation
J4_6Z1P_007No text annotation
J5_6Z1P_006No text annotation
J6_6Z1P_001No text annotation
J7_6Z1P_001No text annotation
J7_6Z1P_002No text annotation

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