5D8B Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5D8B_001 | 1/AD/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_5D8B_002 | 1/AD/86:90 | No text annotation Not in a motif group | homologous HL_7A0S_070 HL_42097.1 | |
| HL_5D8B_003 | 1/BD/13:22 | No text annotation Not in a motif group | homologous HL_6PMO_003 NA | |
| HL_5D8B_004 | 1/BD/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_6UFM_002 HL_53597.2 | |
| HL_5D8B_005 | 1/BD/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_1U0B_003 HL_71309.1 | |
| HL_5D8B_006 | 1/ED/13:22 | No text annotation Not in a motif group | homologous HL_1QF6_001 NA | |
| HL_5D8B_007 | 1/ED/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
| HL_5D8B_008 | 1/ED/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5AXM_003 HL_22280.1 | |
| HL_5D8B_009 | 1/FD/13:22 | No text annotation Not in a motif group | homologous HL_1QF6_001 NA | |
| HL_5D8B_010 | 1/FD/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
| HL_5D8B_011 | 1/FD/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5AXM_003 HL_22280.1 | |
| HL_5D8B_012 | 1/UC/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5D8B_013 | 1/UC/79:90 | No text annotation Not in a motif group | ||
| HL_5D8B_014 | 1/UC/102C:103B | No text annotation Not in a motif group | ||
| HL_5D8B_015 | 1/UC/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_5D8B_016 | 1/UC/186G:191A | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_5D8B_017 | 1/UC/200:217 | No text annotation Not in a motif group | homologous HL_6CZR_076 HL_34168.2 | |
| HL_5D8B_018 | 1/UC/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_5D8B_019 | 1/UC/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_5D8B_020 | 1/UC/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_5D8B_021 | 1/UC/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_5D8B_022 | 1/UC/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_5D8B_023 | 1/UC/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_5D8B_024 | 1/UC/458:474 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_5D8B_025 | 1/UC/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_5D8B_026 | 1/UC/617:623 | No text annotation Not in a motif group | homologous HL_6CZR_085 HL_26881.1 | |
| HL_5D8B_027 | 1/UC/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_5D8B_028 | 1/UC/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_5D8B_029 | 1/UC/786:796 | No text annotation Not in a motif group | homologous HL_6CZR_088 HL_12326.1 | |
| HL_5D8B_030 | 1/UC/837:849 | No text annotation Not in a motif group | homologous HL_5J7L_018 HL_34168.2 | |
| HL_5D8B_031 | 1/UC/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_5D8B_032 | 1/UC/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_5D8B_033 | 1/UC/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5D8B_034 | 1/UC/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_5D8B_035 | 1/UC/1027:1034 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_5D8B_036 | 1/UC/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_5D8B_037 | 1/UC/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5D8B_038 | 1/UC/1134:1140 | No text annotation Not in a motif group | homologous HL_4LFB_026 HL_03562.2 | |
| HL_5D8B_039 | 1/UC/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_5D8B_040 | 1/UC/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_5D8B_041 | 1/UC/1314:1323 | No text annotation Not in a motif group | geometric HL_5J7L_028 HL_89380.2 | |
| HL_5D8B_042 | 1/UC/1356:1366 | No text annotation Not in a motif group | ||
| HL_5D8B_043 | 1/UC/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_5D8B_044 | 1/UC/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_5D8B_045 | 1/VC/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_5D8B_046 | 1/VC/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_5D8B_047 | 1/VC/123:128 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_5D8B_048 | 1/VC/137B:141B | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_5D8B_049 | 1/VC/155:171 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_5D8B_050 | 1/VC/194:201 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.2 | |
| HL_5D8B_051 | 1/VC/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_5D8B_052 | 1/VC/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_5D8B_053 | 1/VC/270J:270R | No text annotation Not in a motif group | ||
| HL_5D8B_054 | 1/VC/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_5D8B_055 | 1/VC/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_5D8B_056 | 1/VC/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_5D8B_057 | 1/VC/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_5D8B_058 | 1/VC/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_5D8B_059 | 1/VC/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_5D8B_060 | 1/VC/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_5D8B_061 | 1/VC/544:549 | No text annotation Not in a motif group | geometric HL_7RQB_046 HL_42097.1 | |
| HL_5D8B_062 | 1/VC/566:575 | No text annotation Not in a motif group | homologous HL_7A0S_018 HL_89380.2 | |
| HL_5D8B_063 | 1/VC/611:617 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_5D8B_064 | 1/VC/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_5D8B_065 | 1/VC/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_5D8B_066 | 1/VC/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5D8B_067 | 1/VC/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_5D8B_068 | 1/VC/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_5D8B_069 | 1/VC/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_64365.1 | |
| HL_5D8B_070 | 1/VC/884:892 | No text annotation Not in a motif group | homologous HL_7RQB_026 HL_27930.1 | |
| HL_5D8B_071 | 1/VC/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_5D8B_072 | 1/VC/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_5D8B_073 | 1/VC/1064:1074 | No text annotation Not in a motif group | homologous HL_5J7L_161 HL_07145.1 | |
| HL_5D8B_074 | 1/VC/1171:1178 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_5D8B_075 | 1/VC/1222:1227 | GNRA Not in a motif group | geometric HL_4WFL_003 HL_42097.1 | |
| HL_5D8B_076 | 1/VC/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_032 HL_89380.2 | |
| HL_5D8B_077 | 1/VC/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_5D8B_078 | 1/VC/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_5D8B_079 | 1/VC/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_5D8B_080 | 1/VC/1450:1461 | No text annotation Not in a motif group | ||
| HL_5D8B_081 | 1/VC/1492:1498 | No text annotation Not in a motif group | ||
| HL_5D8B_082 | 1/VC/1533:1538 | Other HL Not in a motif group | geometric HL_3AM1_002 HL_87030.2 | |
| HL_5D8B_083 | 1/VC/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_5D8B_084 | 1/VC/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_5D8B_085 | 1/VC/1630:1636 | No text annotation Not in a motif group | ||
| HL_5D8B_086 | 1/VC/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
| HL_5D8B_087 | 1/VC/1726:1734 | No text annotation Not in a motif group | homologous HL_4WF9_041 HL_49288.1 | |
| HL_5D8B_088 | 1/VC/1752:1756 | No text annotation Not in a motif group | ||
| HL_5D8B_089 | 1/VC/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_5D8B_090 | 1/VC/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_5D8B_091 | 1/VC/1864:1878 | No text annotation Not in a motif group | homologous HL_7A0S_047 HL_42097.1 | |
| HL_5D8B_092 | 1/VC/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_5D8B_093 | 1/VC/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_5D8B_094 | 1/VC/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_5D8B_096 | 1/VC/2209:2215 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_5D8B_097 | 1/VC/2248:2256 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_5D8B_098 | 1/VC/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_5D8B_099 | 1/VC/2303:2313 | No text annotation Not in a motif group | homologous HL_4WF9_051 NA | |
| HL_5D8B_100 | 1/VC/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_5D8B_101 | 1/VC/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_5D8B_102 | 1/VC/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_5D8B_103 | 1/VC/2404:2413 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_5D8B_104 | 1/VC/2471:2479 | No text annotation Not in a motif group | homologous HL_7A0S_059 HL_06192.2 | |
| HL_5D8B_105 | 1/VC/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_5D8B_106 | 1/VC/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_5D8B_107 | 1/VC/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_5D8B_108 | 1/VC/2658:2663 | GNRA Not in a motif group | geometric HL_4FRG_002 HL_42097.1 | |
| HL_5D8B_109 | 1/VC/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_5D8B_110 | 1/VC/2745:2759 | No text annotation Not in a motif group | homologous HL_4WF9_062 HL_56677.7 | |
| HL_5D8B_112 | 1/VC/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_5D8B_113 | 1/VC/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_5D8B_114 | 1/WC/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_5D8B_115 | 1/WC/86:90 | No text annotation Not in a motif group | homologous HL_7A0S_070 HL_42097.1 | |
| HL_5D8B_116 | 1/XC/13:22 | No text annotation Not in a motif group | homologous HL_6PMO_003 NA | |
| HL_5D8B_117 | 1/XC/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_6UFM_002 HL_53597.2 | |
| HL_5D8B_118 | 1/XC/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_1U0B_003 HL_71309.1 | |
| HL_5D8B_119 | 1/YC/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5D8B_120 | 1/YC/79:90 | No text annotation Not in a motif group | ||
| HL_5D8B_122 | 1/YC/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_5D8B_123 | 1/YC/186G:191A | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_5D8B_124 | 1/YC/200:217 | No text annotation Not in a motif group | homologous HL_6CZR_076 HL_34168.2 | |
| HL_5D8B_125 | 1/YC/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_5D8B_126 | 1/YC/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_5D8B_127 | 1/YC/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_5D8B_128 | 1/YC/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_5D8B_130 | 1/YC/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_5D8B_131 | 1/YC/458:474 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_5D8B_132 | 1/YC/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_5D8B_133 | 1/YC/617:623 | No text annotation Not in a motif group | homologous HL_6CZR_085 HL_26881.1 | |
| HL_5D8B_134 | 1/YC/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_5D8B_135 | 1/YC/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_5D8B_137 | 1/YC/837:849 | No text annotation Not in a motif group | homologous HL_5J7L_018 HL_34168.2 | |
| HL_5D8B_138 | 1/YC/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_5D8B_139 | 1/YC/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_5D8B_140 | 1/YC/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5D8B_141 | 1/YC/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_5D8B_142 | 1/YC/1027:1034 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_5D8B_143 | 1/YC/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_5D8B_144 | 1/YC/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5D8B_145 | 1/YC/1134:1140 | No text annotation Not in a motif group | homologous HL_4LFB_026 HL_03562.2 | |
| HL_5D8B_146 | 1/YC/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_5D8B_147 | 1/YC/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_5D8B_148 | 1/YC/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
| HL_5D8B_149 | 1/YC/1356:1366 | No text annotation Not in a motif group | ||
| HL_5D8B_150 | 1/YC/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_5D8B_151 | 1/YC/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_5D8B_152 | 1/ZC/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_5D8B_153 | 1/ZC/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_5D8B_154 | 1/ZC/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_5D8B_155 | 1/ZC/137B:141B | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_5D8B_156 | 1/ZC/155:171 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_5D8B_157 | 1/ZC/194:201 | No text annotation Not in a motif group | homologous HL_4WF9_006 HL_06192.2 | |
| HL_5D8B_158 | 1/ZC/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_5D8B_159 | 1/ZC/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_5D8B_160 | 1/ZC/270L:270O | No text annotation Not in a motif group | ||
| HL_5D8B_161 | 1/ZC/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_5D8B_162 | 1/ZC/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_5D8B_163 | 1/ZC/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_5D8B_164 | 1/ZC/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_5D8B_165 | 1/ZC/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_5D8B_167 | 1/ZC/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_5D8B_168 | 1/ZC/544:549 | No text annotation Not in a motif group | geometric HL_7RQB_046 HL_42097.1 | |
| HL_5D8B_169 | 1/ZC/566:575 | No text annotation Not in a motif group | homologous HL_7A0S_018 HL_89380.2 | |
| HL_5D8B_170 | 1/ZC/611:617 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_5D8B_171 | 1/ZC/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_5D8B_172 | 1/ZC/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_5D8B_173 | 1/ZC/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5D8B_174 | 1/ZC/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_5D8B_175 | 1/ZC/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_5D8B_176 | 1/ZC/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_64365.1 | |
| HL_5D8B_177 | 1/ZC/884:892 | No text annotation Not in a motif group | homologous HL_7RQB_026 HL_27930.1 | |
| HL_5D8B_178 | 1/ZC/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_5D8B_179 | 1/ZC/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_5D8B_180 | 1/ZC/1064:1074 | No text annotation Not in a motif group | homologous HL_5J7L_161 HL_07145.1 | |
| HL_5D8B_181 | 1/ZC/1171:1178 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_5D8B_182 | 1/ZC/1222:1227 | GNRA Not in a motif group | geometric HL_4WFL_003 HL_42097.1 | |
| HL_5D8B_183 | 1/ZC/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_032 HL_89380.2 | |
| HL_5D8B_184 | 1/ZC/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_5D8B_185 | 1/ZC/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_5D8B_186 | 1/ZC/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_5D8B_187 | 1/ZC/1450:1461 | No text annotation Not in a motif group | ||
| HL_5D8B_188 | 1/ZC/1492:1498 | No text annotation Not in a motif group | ||
| HL_5D8B_189 | 1/ZC/1533:1538 | Other HL Not in a motif group | geometric HL_3AM1_002 HL_87030.2 | |
| HL_5D8B_190 | 1/ZC/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_5D8B_191 | 1/ZC/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_5D8B_192 | 1/ZC/1630:1636 | No text annotation Not in a motif group | ||
| HL_5D8B_193 | 1/ZC/1691:1696 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_5D8B_194 | 1/ZC/1726:1734 | No text annotation Not in a motif group | homologous HL_4WF9_041 HL_49288.1 | |
| HL_5D8B_195 | 1/ZC/1752:1756 | No text annotation Not in a motif group | ||
| HL_5D8B_196 | 1/ZC/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_5D8B_197 | 1/ZC/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_5D8B_198 | 1/ZC/1864:1878 | No text annotation Not in a motif group | homologous HL_7A0S_047 HL_42097.1 | |
| HL_5D8B_199 | 1/ZC/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_5D8B_200 | 1/ZC/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_5D8B_201 | 1/ZC/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_5D8B_202 | 1/ZC/2143:2148 | No text annotation Not in a motif group | homologous HL_7RQB_051 NA | |
| HL_5D8B_203 | 1/ZC/2209:2215 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_5D8B_204 | 1/ZC/2248:2256 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.2 | |
| HL_5D8B_205 | 1/ZC/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_5D8B_206 | 1/ZC/2303:2313 | No text annotation Not in a motif group | homologous HL_4WF9_051 NA | |
| HL_5D8B_207 | 1/ZC/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_5D8B_208 | 1/ZC/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_5D8B_209 | 1/ZC/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_42097.1 | |
| HL_5D8B_210 | 1/ZC/2404:2413 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_5D8B_211 | 1/ZC/2471:2479 | No text annotation Not in a motif group | homologous HL_7A0S_059 HL_06192.2 | |
| HL_5D8B_212 | 1/ZC/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_5D8B_213 | 1/ZC/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_5D8B_214 | 1/ZC/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_5D8B_215 | 1/ZC/2658:2663 | GNRA Not in a motif group | geometric HL_4FRG_002 HL_42097.1 | |
| HL_5D8B_216 | 1/ZC/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_5D8B_217 | 1/ZC/2745:2759 | No text annotation Not in a motif group | homologous HL_4WF9_062 HL_56677.7 | |
| HL_5D8B_219 | 1/ZC/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_27930.1 | |
| HL_5D8B_220 | 1/ZC/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5D8B_095 | No text annotation | ||
| HL_5D8B_111 | No text annotation | ||
| HL_5D8B_121 | No text annotation | ||
| HL_5D8B_129 | GNRA | ||
| HL_5D8B_136 | No text annotation | ||
| HL_5D8B_166 | GNRA | ||
| HL_5D8B_218 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5D8B_001 | 1/AD/17:18, 1/AD/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_5D8B_002 | 1/AD/23:28, 1/AD/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_5D8B_003 | 1/AD/30:31, 1/AD/51:54 | No text annotation Not in a motif group | ||
| IL_5D8B_004 | 1/AD/34:38, 1/AD/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_5D8B_005 | 1/AD/71:79, 1/AD/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_5D8B_006 | 1/AD/80:82, 1/AD/94:96 | No text annotation Not in a motif group | geometric IL_7A0S_107 IL_51629.2 | |
| IL_5D8B_007 | 1/UC/30:32, 1/UC/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_5D8B_008 | 1/UC/44:45, 1/UC/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_5D8B_009 | 1/UC/47:52, 1/UC/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_5D8B_010 | 1/UC/54:56, 1/UC/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_5D8B_011 | 1/UC/67:69, 1/UC/99:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_5D8B_012 | 1/UC/75:77, 1/UC/92:95 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_5D8B_014 | 1/UC/132:136, 1/UC/227:230 | No text annotation Not in a motif group | geometric IL_4LFB_008 IL_58764.3 | |
| IL_5D8B_016 | 1/UC/148:153, 1/UC/168:174 | tWH-tWH-tHW-tHW Not in a motif group | geometric IL_4LFB_009 IL_39753.1 | |
| IL_5D8B_018 | 1/UC/156:158, 1/UC/163:165 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_5D8B_019 | 1/UC/186A:186C, 1/UC/191E:191G | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_5D8B_020 | 1/UC/242:247, 1/UC/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_5D8B_021 | 1/UC/249:253, 1/UC/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
| IL_5D8B_022 | 1/UC/292:293, 1/UC/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5D8B_023 | 1/UC/371:375, 1/UC/389:390 | C-loop Not in a motif group | geometric IL_6CZR_127 IL_75255.1 | |
| IL_5D8B_024 | 1/UC/375:377, 1/UC/386:389 | Single bulged G, near cWW Not in a motif group | homologous IL_6CZR_128 IL_52767.2 | |
| IL_5D8B_025 | 1/UC/409:416, 1/UC/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5D8B_026 | 1/UC/445:450, 1/UC/483:489 | No text annotation Not in a motif group | ||
| IL_5D8B_027 | 1/UC/450:455, 1/UC/477:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_5D8B_028 | 1/UC/504:511, 1/UC/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_5D8B_029 | 1/UC/514:521, 1/UC/528:537 | No text annotation Not in a motif group | ||
| IL_5D8B_030 | 1/UC/569:575, 1/UC/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_5D8B_031 | 1/UC/580:584, 1/UC/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_5D8B_032 | 1/UC/594:596, 1/UC/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_5D8B_033 | 1/UC/597:598, 1/UC/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_5D8B_034 | 1/UC/605:612, 1/UC/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_5D8B_035 | 1/UC/654:655, 1/UC/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_5D8B_036 | 1/UC/657:659, 1/UC/746:749 | No text annotation Not in a motif group | ||
| IL_5D8B_037 | 1/UC/662:666, 1/UC/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_5D8B_038 | 1/UC/673:678, 1/UC/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_5D8B_039 | 1/UC/683:688, 1/UC/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_5D8B_040 | 1/UC/774:778, 1/UC/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_5D8B_041 | 1/UC/779:783, 1/UC/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
| IL_5D8B_042 | 1/UC/835:837, 1/UC/849:851 | No text annotation Not in a motif group | geometric IL_7RQB_034 IL_95997.1 | |
| IL_5D8B_043 | 1/UC/887:894, 1/UC/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5D8B_044 | 1/UC/921:923, 1/UC/1393:1396 | No text annotation Not in a motif group | geometric IL_4KYY_002 IL_51629.2 | |
| IL_5D8B_045 | 1/UC/925:927, 1/UC/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_5D8B_046 | 1/UC/933:935, 1/UC/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_5D8B_047 | 1/UC/953:954, 1/UC/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_5D8B_048 | 1/UC/993:998B, 1/UC/1042:1045 | No text annotation Not in a motif group | ||
| IL_5D8B_050 | 1/UC/1008:1010, 1/UC/1019:1021 | Isolated near basepair Not in a motif group | geometric IL_4V88_406 IL_52767.2 | |
| IL_5D8B_051 | 1/UC/1048:1050, 1/UC/1208:1209 | No text annotation Not in a motif group | homologous IL_6CZR_152 NA | |
| IL_5D8B_052 | 1/UC/1051:1056, 1/UC/1204:1207 | No text annotation Not in a motif group | ||
| IL_5D8B_053 | 1/UC/1057:1058, 1/UC/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_5D8B_054 | 1/UC/1060:1061, 1/UC/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_5D8B_055 | 1/UC/1061:1063, 1/UC/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_5D8B_056 | 1/UC/1124:1127, 1/UC/1145:1149 | No text annotation Not in a motif group | ||
| IL_5D8B_057 | 1/UC/1127:1132, 1/UC/1142:1145 | No text annotation Not in a motif group | ||
| IL_5D8B_058 | 1/UC/1158:1161, 1/UC/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_5D8B_059 | 1/UC/1247:1253, 1/UC/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_5D8B_060 | 1/UC/1255:1258, 1/UC/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_5D8B_061 | 1/UC/1259:1262, 1/UC/1273:1276 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_5D8B_062 | 1/UC/1303:1308, 1/UC/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_5D8B_064 | 1/UC/1399:1401, 1/UC/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_5D8B_065 | 1/UC/1401:1404, 1/UC/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5D8B_066 | 1/UC/1405:1407, 1/UC/1494:1496 | No text annotation Not in a motif group | geometric IL_4V9F_017 IL_95997.1 | |
| IL_5D8B_067 | 1/UC/1407:1409, 1/UC/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_5D8B_068 | 1/UC/1412:1414, 1/UC/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_5D8B_069 | 1/UC/1416:1419, 1/UC/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_5D8B_070 | 1/UC/1431:1435, 1/UC/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
| IL_5D8B_071 | 1/UC/1435:1437, 1/UC/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_5D8B_072 | 1/UC/1440:1447, 1/UC/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.2 | |
| IL_5D8B_073 | 1/VC/24:30, 1/VC/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_5D8B_074 | 1/VC/36:37, 1/VC/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_5D8B_075 | 1/VC/43:44, 1/VC/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_5D8B_076 | 1/VC/55:56, 1/VC/114:115 | No text annotation Not in a motif group | ||
| IL_5D8B_077 | 1/VC/81:85, 1/VC/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_5D8B_078 | 1/VC/122:123, 1/VC/128:129 | No text annotation Not in a motif group | ||
| IL_5D8B_079 | 1/VC/134:135, 1/VC/144:145 | No text annotation Not in a motif group | ||
| IL_5D8B_080 | 1/VC/154:155, 1/VC/171:172 | No text annotation Not in a motif group | homologous HL_7RQB_005 NA | |
| IL_5D8B_081 | 1/VC/183:184, 1/VC/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_5D8B_082 | 1/VC/188:194, 1/VC/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_5D8B_083 | 1/VC/239:245, 1/VC/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_5D8B_085 | 1/VC/273A:273B, 1/VC/363F:364 | Major groove platform Not in a motif group | geometric IL_1XJR_002 IL_27635.1 | |
| IL_5D8B_086 | 1/VC/273B:273D, 1/VC/363D:363F | No text annotation Not in a motif group | geometric IL_5Y85_006 IL_95997.1 | |
| IL_5D8B_087 | 1/VC/273F:280, 1/VC/360:363B | No text annotation Not in a motif group | ||
| IL_5D8B_088 | 1/VC/280:285, 1/VC/356:360 | tSH-tHW-tHS Not in a motif group | geometric IL_2QWY_007 IL_38862.1 | |
| IL_5D8B_089 | 1/VC/288:290, 1/VC/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_5D8B_090 | 1/VC/293:295, 1/VC/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_5D8B_091 | 1/VC/378:380, 1/VC/394:396 | No text annotation Not in a motif group | geometric IL_5UNE_004 IL_95997.1 | |
| IL_5D8B_092 | 1/VC/481:484, 1/VC/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_5D8B_093 | 1/VC/564:566, 1/VC/575:577 | No text annotation Not in a motif group | geometric IL_4WF9_017 IL_95997.1 | |
| IL_5D8B_094 | 1/VC/606:609B, 1/VC/618B:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_5D8B_095 | 1/VC/672:674, 1/VC/806:808 | No text annotation Not in a motif group | homologous IL_4WF9_020 IL_95997.1 | |
| IL_5D8B_096 | 1/VC/674:678, 1/VC/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_4WF9_021 IL_17470.6 | |
| IL_5D8B_097 | 1/VC/697:698, 1/VC/763:765 | Single bulged A Not in a motif group | geometric IL_7A0S_016 IL_37497.2 | |
| IL_5D8B_098 | 1/VC/702:703, 1/VC/728:730 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_00225.2 | |
| IL_5D8B_099 | 1/VC/703:707, 1/VC/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_5D8B_100 | 1/VC/738:741, 1/VC/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_5D8B_101 | 1/VC/775:777, 1/VC/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7A0S_021 IL_90991.6 | |
| IL_5D8B_102 | 1/VC/837:838, 1/VC/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_5D8B_103 | 1/VC/844:846, 1/VC/931:934 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 IL_52767.2 | |
| IL_5D8B_104 | 1/VC/846:850, 1/VC/928:931 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
| IL_5D8B_105 | 1/VC/858:863, 1/VC/913:919 | No text annotation Not in a motif group | ||
| IL_5D8B_106 | 1/VC/864:868, 1/VC/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_5D8B_107 | 1/VC/870:872, 1/VC/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_52767.2 | |
| IL_5D8B_108 | 1/VC/875:877, 1/VC/899:902 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_5D8B_109 | 1/VC/877:879, 1/VC/898:899 | Minor groove platform Not in a motif group | homologous IL_7RQB_032 IL_93353.1 | |
| IL_5D8B_110 | 1/VC/880:881, 1/VC/895:897 | Single bulged A Not in a motif group | homologous IL_7RQB_033 IL_37497.2 | |
| IL_5D8B_111 | 1/VC/952:954, 1/VC/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_5D8B_112 | 1/VC/994:996, 1/VC/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_5D8B_113 | 1/VC/998:1002, 1/VC/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
| IL_5D8B_114 | 1/VC/1004:1011, 1/VC/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4WF9_037 IL_15861.7 | |
| IL_5D8B_115 | 1/VC/1011:1013, 1/VC/1149:1150 | Single bulged U Not in a motif group | geometric IL_7RQB_038 IL_83039.13 | |
| IL_5D8B_116 | 1/VC/1018:1024, 1/VC/1140:1144 | No text annotation Not in a motif group | ||
| IL_5D8B_117 | 1/VC/1024:1030, 1/VC/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_5D8B_118 | 1/VC/1031:1034, 1/VC/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_5D8B_119 | 1/VC/1043:1051, 1/VC/1108:1112 | Kink-turn Not in a motif group | geometric IL_5J7L_284 IL_90538.4 | |
| IL_5D8B_120 | 1/VC/1051:1053, 1/VC/1106:1108 | UU cWW Not in a motif group | geometric IL_3SZX_003 IL_95997.1 | |
| IL_5D8B_121 | 1/VC/1055:1059, 1/VC/1079:1104 | No text annotation Not in a motif group | ||
| IL_5D8B_122 | 1/VC/1059:1062, 1/VC/1076:1079 | No text annotation Not in a motif group | ||
| IL_5D8B_123 | 1/VC/1196:1199, 1/VC/1246:1250 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.2 | |
| IL_5D8B_124 | 1/VC/1202:1206, 1/VC/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_5D8B_125 | 1/VC/1208:1215, 1/VC/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_5D8B_126 | 1/VC/1219:1221, 1/VC/1229:1230 | Single bulged A Not in a motif group | geometric IL_7RQB_048 IL_37497.2 | |
| IL_5D8B_127 | 1/VC/1221:1222, 1/VC/1227:1229 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_5D8B_128 | 1/VC/1262:1269, 1/VC/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_5D8B_129 | 1/VC/1319:1323, 1/VC/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_5D8B_130 | 1/VC/1351:1355, 1/VC/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_5D8B_131 | 1/VC/1357:1361, 1/VC/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_5D8B_132 | 1/VC/1415:1416, 1/VC/1582:1587 | No text annotation Not in a motif group | ||
| IL_5D8B_133 | 1/VC/1417:1421, 1/VC/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_5D8B_134 | 1/VC/1433:1435, 1/VC/1557:1560 | No text annotation Not in a motif group | homologous IL_7A0S_052 IL_55351.2 | |
| IL_5D8B_135 | 1/VC/1437:1440, 1/VC/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_5D8B_136 | 1/VC/1469:1473, 1/VC/1520:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_5D8B_137 | 1/VC/1481:1483, 1/VC/1506:1512 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_5D8B_138 | 1/VC/1489:1491, 1/VC/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_5D8B_139 | 1/VC/1651:1656, 1/VC/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_5D8B_140 | 1/VC/1663:1665, 1/VC/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_5D8B_141 | 1/VC/1666:1669, 1/VC/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4WF9_064 IL_50694.2 | |
| IL_5D8B_142 | 1/VC/1669:1674, 1/VC/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_4WF9_065 IL_82842.2 | |
| IL_5D8B_143 | 1/VC/1686:1691, 1/VC/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_5D8B_144 | 1/VC/1770:1771, 1/VC/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_5D8B_145 | 1/VC/1798:1804, 1/VC/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_5D8B_146 | 1/VC/1837:1840, 1/VC/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_5D8B_147 | 1/VC/1841:1842, 1/VC/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7A0S_067 IL_16396.2 | |
| IL_5D8B_148 | 1/VC/1846:1849, 1/VC/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_5D8B_149 | 1/VC/1851:1855, 1/VC/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_4WF9_073 IL_90318.1 | |
| IL_5D8B_150 | 1/VC/1856:1860, 1/VC/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_5D8B_152 | 1/VC/1933:1934, 1/VC/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 IL_59677.2 | |
| IL_5D8B_153 | 1/VC/1934:1945, 1/VC/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_5D8B_154 | 1/VC/2050:2052, 1/VC/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_5D8B_155 | 1/VC/2067:2069, 1/VC/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_5D8B_156 | 1/VC/2070:2071, 1/VC/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_5D8B_157 | 1/VC/2081:2083, 1/VC/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_5D8B_158 | 1/VC/2085:2087, 1/VC/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_5D8B_159 | 1/VC/2098:2100, 1/VC/2189:2191 | Isolated cWH basepair Not in a motif group | geometric IL_406D_002 IL_51629.2 | |
| IL_5D8B_160 | 1/VC/2107:2120, 1/VC/2178:2182 | No text annotation Not in a motif group | ||
| IL_5D8B_162 | 1/VC/2124:2127, 1/VC/2161:2174 | No text annotation Not in a motif group | homologous IL_3U4M_003 IL_75283.2 | |
| IL_5D8B_163 | 1/VC/2129:2138, 1/VC/2153:2159 | No text annotation Not in a motif group | ||
| IL_5D8B_164 | 1/VC/2297:2299, 1/VC/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_088 IL_38958.7 | |
| IL_5D8B_165 | 1/VC/2350:2353, 1/VC/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_5D8B_166 | 1/VC/2401:2403, 1/VC/2414:2415 | Single bulged U Not in a motif group | homologous IL_4WF9_088 IL_83039.13 | |
| IL_5D8B_167 | 1/VC/2453:2454, 1/VC/2498:2500 | Single stack bend Not in a motif group | homologous IL_4WF9_089 IL_76488.2 | |
| IL_5D8B_168 | 1/VC/2454:2455, 1/VC/2496:2498 | Major groove platform Not in a motif group | geometric IL_4V9F_082 IL_27635.1 | |
| IL_5D8B_169 | 1/VC/2457:2459, 1/VC/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_5D8B_170 | 1/VC/2459:2461, 1/VC/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_092 IL_92788.2 | |
| IL_5D8B_171 | 1/VC/2466:2470, 1/VC/2480:2484 | Triple sheared Not in a motif group | homologous IL_7A0S_087 IL_56467.8 | |
| IL_5D8B_172 | 1/VC/2507:2508, 1/VC/2580:2582 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_5D8B_173 | 1/VC/2510:2512, 1/VC/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_90933.2 | |
| IL_5D8B_174 | 1/VC/2512:2513, 1/VC/2571:2574 | No text annotation Not in a motif group | geometric IL_4WF9_096 IL_71530.2 | |
| IL_5D8B_175 | 1/VC/2522:2523, 1/VC/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_5D8B_176 | 1/VC/2591:2592, 1/VC/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_5D8B_177 | 1/VC/2636:2640, 1/VC/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_5D8B_178 | 1/VC/2652:2658, 1/VC/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 IL_16458.1 | |
| IL_5D8B_179 | 1/VC/2680:2684, 1/VC/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.6 | |
| IL_5D8B_181 | 1/VC/2687:2691, 1/VC/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_5D8B_182 | 1/VC/2695:2696, 1/VC/2711:2714 | Multiple bulged bases Not in a motif group | geometric IL_4V9F_088 IL_71530.2 | |
| IL_5D8B_183 | 1/VC/2737:2742, 1/VC/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_5D8B_184 | 1/VC/2838:2839, 1/VC/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_5D8B_185 | 1/VC/2843:2846, 1/VC/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_5D8B_186 | 1/VC/2846:2852, 1/VC/2865:2870 | No text annotation Not in a motif group | ||
| IL_5D8B_187 | 1/WC/17:18, 1/WC/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_5D8B_188 | 1/WC/23:28, 1/WC/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_5D8B_189 | 1/WC/30:31, 1/WC/51:54 | No text annotation Not in a motif group | ||
| IL_5D8B_190 | 1/WC/34:38, 1/WC/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_5D8B_191 | 1/WC/71:79, 1/WC/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_5D8B_192 | 1/WC/80:82, 1/WC/94:96 | No text annotation Not in a motif group | geometric IL_7A0S_107 IL_51629.2 | |
| IL_5D8B_193 | 1/YC/30:32, 1/YC/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_5D8B_194 | 1/YC/44:45, 1/YC/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_5D8B_195 | 1/YC/47:52, 1/YC/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_5D8B_196 | 1/YC/54:56, 1/YC/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_5D8B_197 | 1/YC/67:69, 1/YC/99:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_5D8B_198 | 1/YC/75:77, 1/YC/92:95 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_5D8B_199 | 1/YC/129A:131, 1/YC/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_5D8B_200 | 1/YC/132:136, 1/YC/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_5D8B_202 | 1/YC/148:153, 1/YC/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_5D8B_204 | 1/YC/156:158, 1/YC/163:165 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_5D8B_205 | 1/YC/186A:186C, 1/YC/191E:191G | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_5D8B_206 | 1/YC/242:247, 1/YC/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_5D8B_207 | 1/YC/249:253, 1/YC/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
| IL_5D8B_208 | 1/YC/292:293, 1/YC/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5D8B_209 | 1/YC/371:375, 1/YC/389:390 | C-loop Not in a motif group | homologous IL_6CZR_127 IL_75255.1 | |
| IL_5D8B_210 | 1/YC/375:377, 1/YC/386:389 | Single bulged G, near cWW Not in a motif group | geometric IL_6CZR_128 IL_52767.2 | |
| IL_5D8B_211 | 1/YC/409:416, 1/YC/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5D8B_212 | 1/YC/445:450, 1/YC/483:489 | No text annotation Not in a motif group | ||
| IL_5D8B_213 | 1/YC/450:455, 1/YC/477:483 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_11882.1 | |
| IL_5D8B_214 | 1/YC/504:511, 1/YC/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_5D8B_215 | 1/YC/514:521, 1/YC/528:537 | No text annotation Not in a motif group | ||
| IL_5D8B_216 | 1/YC/569:575, 1/YC/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_5D8B_217 | 1/YC/580:584, 1/YC/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_5D8B_218 | 1/YC/594:596, 1/YC/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_5D8B_219 | 1/YC/597:598, 1/YC/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_5D8B_220 | 1/YC/605:612, 1/YC/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_5D8B_221 | 1/YC/654:655, 1/YC/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_5D8B_222 | 1/YC/657:659, 1/YC/746:749 | No text annotation Not in a motif group | ||
| IL_5D8B_223 | 1/YC/662:666, 1/YC/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_5D8B_224 | 1/YC/673:678, 1/YC/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_5D8B_225 | 1/YC/683:688, 1/YC/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_5D8B_226 | 1/YC/774:778, 1/YC/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_5D8B_227 | 1/YC/779:783, 1/YC/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
| IL_5D8B_228 | 1/YC/835:837, 1/YC/849:851 | No text annotation Not in a motif group | geometric IL_7RQB_034 IL_95997.1 | |
| IL_5D8B_229 | 1/YC/887:894, 1/YC/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5D8B_230 | 1/YC/921:923, 1/YC/1393:1396 | No text annotation Not in a motif group | geometric IL_4KYY_002 IL_51629.2 | |
| IL_5D8B_231 | 1/YC/925:927, 1/YC/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_5D8B_232 | 1/YC/933:935, 1/YC/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_5D8B_233 | 1/YC/953:954, 1/YC/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_5D8B_234 | 1/YC/993:998B, 1/YC/1042:1045 | No text annotation Not in a motif group | ||
| IL_5D8B_236 | 1/YC/1008:1010, 1/YC/1019:1021 | Isolated near basepair Not in a motif group | geometric IL_4V88_406 IL_52767.2 | |
| IL_5D8B_237 | 1/YC/1048:1050, 1/YC/1208:1209 | No text annotation Not in a motif group | homologous IL_6CZR_152 NA | |
| IL_5D8B_238 | 1/YC/1051:1056, 1/YC/1204:1207 | No text annotation Not in a motif group | ||
| IL_5D8B_239 | 1/YC/1057:1058, 1/YC/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_5D8B_240 | 1/YC/1060:1061, 1/YC/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_5D8B_241 | 1/YC/1061:1063, 1/YC/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_5D8B_242 | 1/YC/1124:1127, 1/YC/1145:1149 | No text annotation Not in a motif group | ||
| IL_5D8B_243 | 1/YC/1127:1132, 1/YC/1142:1145 | No text annotation Not in a motif group | ||
| IL_5D8B_244 | 1/YC/1158:1161, 1/YC/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_5D8B_245 | 1/YC/1247:1253, 1/YC/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_5D8B_246 | 1/YC/1255:1258, 1/YC/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_5D8B_247 | 1/YC/1259:1262, 1/YC/1273:1276 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_5D8B_248 | 1/YC/1303:1308, 1/YC/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_5D8B_250 | 1/YC/1399:1401, 1/YC/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_5D8B_251 | 1/YC/1401:1404, 1/YC/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5D8B_252 | 1/YC/1405:1407, 1/YC/1494:1496 | No text annotation Not in a motif group | geometric IL_4V9F_017 IL_95997.1 | |
| IL_5D8B_253 | 1/YC/1407:1409, 1/YC/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_5D8B_254 | 1/YC/1412:1414, 1/YC/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_5D8B_255 | 1/YC/1416:1419, 1/YC/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_5D8B_256 | 1/YC/1431:1435, 1/YC/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
| IL_5D8B_257 | 1/YC/1435:1437, 1/YC/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_5D8B_258 | 1/YC/1440:1447, 1/YC/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.2 | |
| IL_5D8B_259 | 1/ZC/24:30, 1/ZC/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_5D8B_260 | 1/ZC/36:37, 1/ZC/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_5D8B_261 | 1/ZC/43:45, 1/ZC/433:436 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_5D8B_262 | 1/ZC/55:56, 1/ZC/114:115 | No text annotation Not in a motif group | ||
| IL_5D8B_263 | 1/ZC/81:85, 1/ZC/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_5D8B_264 | 1/ZC/122:123, 1/ZC/128:129 | No text annotation Not in a motif group | ||
| IL_5D8B_265 | 1/ZC/134:135, 1/ZC/144:145 | No text annotation Not in a motif group | ||
| IL_5D8B_266 | 1/ZC/154:155, 1/ZC/171:172 | No text annotation Not in a motif group | ||
| IL_5D8B_267 | 1/ZC/183:184, 1/ZC/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_5D8B_268 | 1/ZC/188:194, 1/ZC/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_5D8B_269 | 1/ZC/239:245, 1/ZC/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_5D8B_270 | 1/ZC/270J:270L, 1/ZC/270O:270R | No text annotation Not in a motif group | ||
| IL_5D8B_272 | 1/ZC/273A:273B, 1/ZC/363F:364 | Major groove platform Not in a motif group | geometric IL_1XJR_002 IL_27635.1 | |
| IL_5D8B_273 | 1/ZC/273B:273D, 1/ZC/363D:363F | No text annotation Not in a motif group | geometric IL_5Y85_006 IL_95997.1 | |
| IL_5D8B_274 | 1/ZC/273F:280, 1/ZC/360:363B | No text annotation Not in a motif group | ||
| IL_5D8B_275 | 1/ZC/280:285, 1/ZC/356:360 | tSH-tHW-tHS Not in a motif group | geometric IL_2QWY_007 IL_38862.1 | |
| IL_5D8B_276 | 1/ZC/288:290, 1/ZC/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_5D8B_277 | 1/ZC/293:295, 1/ZC/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_5D8B_278 | 1/ZC/378:380, 1/ZC/394:396 | No text annotation Not in a motif group | geometric IL_5UNE_004 IL_95997.1 | |
| IL_5D8B_279 | 1/ZC/481:484, 1/ZC/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_5D8B_280 | 1/ZC/564:566, 1/ZC/575:577 | No text annotation Not in a motif group | geometric IL_4WF9_017 IL_95997.1 | |
| IL_5D8B_281 | 1/ZC/606:609B, 1/ZC/618B:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_5D8B_282 | 1/ZC/672:674, 1/ZC/806:808 | No text annotation Not in a motif group | homologous IL_4WF9_020 IL_95997.1 | |
| IL_5D8B_283 | 1/ZC/674:678, 1/ZC/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_4WF9_021 IL_17470.6 | |
| IL_5D8B_284 | 1/ZC/697:698, 1/ZC/763:765 | Single bulged A Not in a motif group | geometric IL_7A0S_016 IL_37497.2 | |
| IL_5D8B_285 | 1/ZC/702:703, 1/ZC/728:730 | Single bulged G Not in a motif group | homologous IL_7RQB_020 IL_00225.2 | |
| IL_5D8B_286 | 1/ZC/703:707, 1/ZC/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_5D8B_287 | 1/ZC/738:741, 1/ZC/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_5D8B_288 | 1/ZC/775:777, 1/ZC/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7A0S_021 IL_90991.6 | |
| IL_5D8B_289 | 1/ZC/837:838, 1/ZC/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_5D8B_290 | 1/ZC/844:846, 1/ZC/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_5D8B_291 | 1/ZC/846:850, 1/ZC/928:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_5D8B_292 | 1/ZC/858:863, 1/ZC/913:919 | No text annotation Not in a motif group | ||
| IL_5D8B_293 | 1/ZC/864:868, 1/ZC/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_5D8B_294 | 1/ZC/870:872, 1/ZC/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_52767.2 | |
| IL_5D8B_295 | 1/ZC/875:877, 1/ZC/899:902 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_5D8B_296 | 1/ZC/877:879, 1/ZC/898:899 | Minor groove platform Not in a motif group | homologous IL_7RQB_032 IL_93353.1 | |
| IL_5D8B_297 | 1/ZC/880:881, 1/ZC/895:897 | Single bulged A Not in a motif group | homologous IL_7RQB_033 IL_37497.2 | |
| IL_5D8B_298 | 1/ZC/952:954, 1/ZC/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_5D8B_299 | 1/ZC/994:996, 1/ZC/1159:1160 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_5D8B_300 | 1/ZC/998:1002, 1/ZC/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
| IL_5D8B_301 | 1/ZC/1004:1011, 1/ZC/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4WF9_037 IL_15861.7 | |
| IL_5D8B_302 | 1/ZC/1011:1013, 1/ZC/1149:1150 | Single bulged U Not in a motif group | geometric IL_7RQB_038 IL_83039.13 | |
| IL_5D8B_303 | 1/ZC/1018:1024, 1/ZC/1140:1144 | No text annotation Not in a motif group | ||
| IL_5D8B_304 | 1/ZC/1024:1030, 1/ZC/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_5D8B_305 | 1/ZC/1031:1034, 1/ZC/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_82068.2 | |
| IL_5D8B_306 | 1/ZC/1043:1051, 1/ZC/1108:1112 | Kink-turn Not in a motif group | geometric IL_5J7L_284 IL_90538.4 | |
| IL_5D8B_307 | 1/ZC/1051:1053, 1/ZC/1106:1108 | UU cWW Not in a motif group | geometric IL_3SZX_003 IL_95997.1 | |
| IL_5D8B_308 | 1/ZC/1055:1059, 1/ZC/1079:1104 | No text annotation Not in a motif group | ||
| IL_5D8B_309 | 1/ZC/1059:1062, 1/ZC/1076:1079 | No text annotation Not in a motif group | ||
| IL_5D8B_310 | 1/ZC/1196:1199, 1/ZC/1246:1250 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.2 | |
| IL_5D8B_311 | 1/ZC/1202:1206, 1/ZC/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_5D8B_312 | 1/ZC/1208:1215, 1/ZC/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_5D8B_313 | 1/ZC/1219:1221, 1/ZC/1229:1230 | Single bulged A Not in a motif group | geometric IL_7RQB_048 IL_37497.2 | |
| IL_5D8B_314 | 1/ZC/1221:1222, 1/ZC/1227:1229 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_5D8B_315 | 1/ZC/1262:1269, 1/ZC/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_5D8B_316 | 1/ZC/1319:1323, 1/ZC/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_5D8B_317 | 1/ZC/1351:1355, 1/ZC/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_5D8B_318 | 1/ZC/1357:1361, 1/ZC/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_5D8B_319 | 1/ZC/1415:1416, 1/ZC/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_5D8B_320 | 1/ZC/1417:1421, 1/ZC/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_5D8B_321 | 1/ZC/1433:1435, 1/ZC/1557:1560 | No text annotation Not in a motif group | homologous IL_7A0S_052 IL_55351.2 | |
| IL_5D8B_322 | 1/ZC/1437:1440, 1/ZC/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_5D8B_323 | 1/ZC/1469:1473, 1/ZC/1520:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_5D8B_324 | 1/ZC/1481:1483, 1/ZC/1506:1512 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_5D8B_325 | 1/ZC/1489:1491, 1/ZC/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_5D8B_326 | 1/ZC/1651:1656, 1/ZC/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_5D8B_327 | 1/ZC/1663:1665, 1/ZC/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_5D8B_328 | 1/ZC/1666:1669, 1/ZC/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4WF9_064 IL_50694.2 | |
| IL_5D8B_329 | 1/ZC/1669:1674, 1/ZC/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_4WF9_065 IL_82842.2 | |
| IL_5D8B_330 | 1/ZC/1686:1691, 1/ZC/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_5D8B_331 | 1/ZC/1770:1771, 1/ZC/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_5D8B_332 | 1/ZC/1798:1804, 1/ZC/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_5D8B_333 | 1/ZC/1837:1840, 1/ZC/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_5D8B_334 | 1/ZC/1841:1842, 1/ZC/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7A0S_067 IL_16396.2 | |
| IL_5D8B_335 | 1/ZC/1846:1849, 1/ZC/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_5D8B_336 | 1/ZC/1851:1855, 1/ZC/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_4WF9_073 IL_90318.1 | |
| IL_5D8B_337 | 1/ZC/1856:1860, 1/ZC/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_5D8B_339 | 1/ZC/1933:1934, 1/ZC/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 IL_59677.2 | |
| IL_5D8B_340 | 1/ZC/1934:1945, 1/ZC/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_5D8B_341 | 1/ZC/2050:2052, 1/ZC/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_5D8B_342 | 1/ZC/2067:2069, 1/ZC/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_5D8B_343 | 1/ZC/2070:2071, 1/ZC/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_5D8B_344 | 1/ZC/2081:2083, 1/ZC/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_5D8B_345 | 1/ZC/2085:2087, 1/ZC/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_5D8B_346 | 1/ZC/2098:2100, 1/ZC/2189:2191 | Isolated cWH basepair Not in a motif group | geometric IL_406D_002 IL_51629.2 | |
| IL_5D8B_349 | 1/ZC/2124:2127, 1/ZC/2161:2174 | No text annotation Not in a motif group | homologous IL_3U4M_003 IL_75283.2 | |
| IL_5D8B_350 | 1/ZC/2129:2138, 1/ZC/2153:2159 | No text annotation Not in a motif group | ||
| IL_5D8B_351 | 1/ZC/2297:2299, 1/ZC/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 IL_38958.7 | |
| IL_5D8B_352 | 1/ZC/2350:2353, 1/ZC/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_5D8B_353 | 1/ZC/2401:2403, 1/ZC/2414:2415 | Single bulged U Not in a motif group | homologous IL_4WF9_088 IL_83039.13 | |
| IL_5D8B_354 | 1/ZC/2453:2454, 1/ZC/2498:2500 | Single stack bend Not in a motif group | homologous IL_4WF9_089 IL_76488.2 | |
| IL_5D8B_355 | 1/ZC/2454:2455, 1/ZC/2496:2498 | Major groove platform Not in a motif group | geometric IL_4V9F_082 IL_27635.1 | |
| IL_5D8B_356 | 1/ZC/2457:2459, 1/ZC/2493:2494 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.1 | |
| IL_5D8B_357 | 1/ZC/2459:2461, 1/ZC/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_4WF9_092 IL_92788.2 | |
| IL_5D8B_358 | 1/ZC/2466:2470, 1/ZC/2480:2484 | Triple sheared Not in a motif group | homologous IL_7A0S_087 IL_56467.8 | |
| IL_5D8B_359 | 1/ZC/2507:2508, 1/ZC/2580:2582 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_5D8B_360 | 1/ZC/2510:2512, 1/ZC/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_5D8B_361 | 1/ZC/2512:2513, 1/ZC/2571:2574 | No text annotation Not in a motif group | homologous IL_4WF9_096 IL_71530.2 | |
| IL_5D8B_362 | 1/ZC/2522:2523, 1/ZC/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.3 | |
| IL_5D8B_363 | 1/ZC/2591:2592, 1/ZC/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_5D8B_364 | 1/ZC/2636:2640, 1/ZC/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_5D8B_365 | 1/ZC/2652:2658, 1/ZC/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 IL_16458.1 | |
| IL_5D8B_366 | 1/ZC/2680:2684, 1/ZC/2725:2727 | C-loop Not in a motif group | geometric IL_5J7L_347 IL_63596.6 | |
| IL_5D8B_368 | 1/ZC/2687:2691, 1/ZC/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_5D8B_369 | 1/ZC/2695:2696, 1/ZC/2711:2714 | Multiple bulged bases Not in a motif group | geometric IL_4V9F_088 IL_71530.2 | |
| IL_5D8B_370 | 1/ZC/2737:2742, 1/ZC/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_5D8B_371 | 1/ZC/2838:2839, 1/ZC/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_5D8B_372 | 1/ZC/2843:2846, 1/ZC/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_5D8B_373 | 1/ZC/2846:2852, 1/ZC/2865:2870 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5D8B_013 | Multiple bulged bases | ||
| IL_5D8B_015 | No text annotation | ||
| IL_5D8B_017 | No text annotation | ||
| IL_5D8B_049 | Tandem non-canonical cWW pairs | ||
| IL_5D8B_063 | No text annotation | ||
| IL_5D8B_084 | No text annotation | ||
| IL_5D8B_151 | No text annotation | ||
| IL_5D8B_161 | No text annotation | ||
| IL_5D8B_180 | No text annotation | ||
| IL_5D8B_201 | No text annotation | ||
| IL_5D8B_203 | No text annotation | ||
| IL_5D8B_235 | Tandem non-canonical cWW pairs | ||
| IL_5D8B_249 | No text annotation | ||
| IL_5D8B_271 | No text annotation | ||
| IL_5D8B_338 | No text annotation | ||
| IL_5D8B_347 | No text annotation | ||
| IL_5D8B_348 | No text annotation | ||
| IL_5D8B_367 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5D8B_001 | 1/UC/826:829, 1/UC/857:861, 1/UC/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_5D8B_002 | 1/UC/936:940, 1/UC/1343:1350, 1/UC/1372:1379 | No text annotation Not in a motif group | ||
| J3_5D8B_003 | 1/UC/943:946, 1/UC/1235:1237, 1/UC/1337:1340 | No text annotation Not in a motif group | homologous J3_5J7L_005 NA | |
| J3_5D8B_004 | 1/UC/955:962, 1/UC/973:984, 1/UC/1221:1225 | No text annotation Not in a motif group | ||
| J3_5D8B_005 | 1/UC/990:993, 1/UC/1045:1047, 1/UC/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_5D8B_006 | 1/UC/1003:1006, 1/UC/1023:1027, 1/UC/1034:1037 | No text annotation Not in a motif group | ||
| J3_5D8B_007 | 1/UC/1063:1068, 1/UC/1107:1113, 1/UC/1187:1193 | No text annotation Not in a motif group | ||
| J3_5D8B_008 | 1/UC/1116:1118, 1/UC/1155:1158, 1/UC/1181:1184 | No text annotation Not in a motif group | homologous J3_4LFB_008 NA | |
| J3_5D8B_009 | 1/UC/1237:1241, 1/UC/1296:1303, 1/UC/1334:1337 | No text annotation Not in a motif group | ||
| J3_5D8B_010 | 1/VC/683:689, 1/VC/773:775, 1/VC/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_5D8B_011 | 1/VC/698:700, 1/VC/732:736, 1/VC/760:763 | No text annotation Not in a motif group | homologous J3_4WF9_003 NA | |
| J3_5D8B_012 | 1/VC/1298:1303, 1/VC/1625:1627, 1/VC/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_5D8B_013 | 1/VC/1306:1309, 1/VC/1605:1611, 1/VC/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_5D8B_014 | 1/VC/2091:2093, 1/VC/2196:2205, 1/VC/2219:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_5D8B_016 | 1/VC/2517:2520, 1/VC/2545:2547, 1/VC/2561:2567 | No text annotation Not in a motif group | ||
| J3_5D8B_017 | 1/YC/826:829, 1/YC/857:861, 1/YC/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_5D8B_018 | 1/YC/936:940, 1/YC/1343:1350, 1/YC/1372:1379 | No text annotation Not in a motif group | ||
| J3_5D8B_019 | 1/YC/943:946, 1/YC/1235:1237, 1/YC/1337:1340 | No text annotation Not in a motif group | ||
| J3_5D8B_020 | 1/YC/955:962, 1/YC/973:984, 1/YC/1221:1225 | No text annotation Not in a motif group | ||
| J3_5D8B_021 | 1/YC/990:993, 1/YC/1045:1047, 1/YC/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_5D8B_022 | 1/YC/1003:1006, 1/YC/1023:1027, 1/YC/1034:1037 | No text annotation Not in a motif group | ||
| J3_5D8B_023 | 1/YC/1063:1068, 1/YC/1107:1113, 1/YC/1187:1193 | No text annotation Not in a motif group | ||
| J3_5D8B_024 | 1/YC/1116:1118, 1/YC/1155:1158, 1/YC/1181:1184 | No text annotation Not in a motif group | homologous J3_4LFB_008 NA | |
| J3_5D8B_025 | 1/YC/1237:1241, 1/YC/1296:1303, 1/YC/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
| J3_5D8B_026 | 1/ZC/683:689, 1/ZC/773:775, 1/ZC/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_5D8B_027 | 1/ZC/698:700, 1/ZC/732:736, 1/ZC/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_5D8B_028 | 1/ZC/1298:1303, 1/ZC/1625:1627, 1/ZC/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_5D8B_029 | 1/ZC/1306:1309, 1/ZC/1605:1611, 1/ZC/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_5D8B_030 | 1/ZC/2091:2093, 1/ZC/2196:2205, 1/ZC/2219:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_5D8B_031 | 1/ZC/2295:2297, 1/ZC/2321:2323, 1/ZC/2332:2337 | No text annotation Not in a motif group | ||
| J3_5D8B_032 | 1/ZC/2517:2520, 1/ZC/2545:2547, 1/ZC/2561:2567 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5D8B_015 | No text annotation |
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