Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/LA/38:45
homologous
HL_5TBW_113
NA
1/LA/69:74
homologous
HL_5TBW_114
NA
1/LA/90:96
homologous
HL_5TBW_115
NA
1/LA/132:136
homologous
HL_5TBW_116
NA
1/LA/194:201
homologous
HL_5TBW_117
NA
1/LA/208:212
homologous
HL_5TBW_118
NA
1/LA/216:224
homologous
HL_5TBW_119
NA
1/LA/278:287
homologous
HL_5TBW_120
NA
1/LA/303:312
homologous
HL_5TBW_121
NA
1/LA/357:362
homologous
HL_5TBW_122
NA
1/LA/382:387
homologous
HL_5TBW_123
NA
1/LA/544:547NANA
1/LA/599:604
homologous
HL_5TBW_125
NA
1/LA/640:649
homologous
HL_5TBW_126
NA
1/LA/686:694
homologous
HL_5TBW_127
NA
1/LA/707:712
homologous
HL_5TBW_128
NA
1/LA/732:737
homologous
HL_5TBW_129
NA
1/LA/763:768
geometric
HL_5TBW_018
NA

HL_00996.1*
1/LA/844:849
homologous
HL_5TBW_131
NA
1/LA/876:885
homologous
HL_5TBW_132
NA
1/LA/910:918
homologous
HL_5TBW_133
NA
1/LA/958:963
homologous
HL_5TBW_134
NA
1/LA/1023:1029
homologous
HL_5TBW_135
NA
1/LA/1076:1083
geometric
HL_5TBW_024
NA

HL_54035.7*
1/LA/1126:1132
homologous
HL_5TBW_137
NA
1/LA/1148:1155
homologous
HL_5TBW_138
NA
1/LA/1239:1249Other HL
geometric
HL_1P6V_001
NA

HL_79299.11*
1/LA/1266:1275
geometric
HL_5TBW_028
NA

HL_87219.4*
1/LA/1347:1357
homologous
HL_5TBW_141
NA
1/LA/1403:1408
homologous
HL_5TBW_142
NA
1/LA/1462:1470
homologous
HL_5TBW_143
NA
1/LA/1506:1512
homologous
HL_5TBW_144
NA
1/LA/1544:1549
homologous
HL_5TBW_145
NA
1/LA/1565:1574NANA
1/LA/1599:1608
homologous
HL_5TBW_147
NA
1/LA/1634:1639
homologous
HL_5TBW_148
NA
1/LA/1680:1688
homologous
HL_5TBW_149
NA
1/LA/1719:1725
homologous
HL_5TBW_150
NA
1/LA/1759:1766
homologous
HL_5TBW_151
NA
1/LA/1792:1796
homologous
HL_5TBW_152
NA
1/LA/1844:1851
homologous
HL_5TBW_153
NA
1/LA/1861:1869
geometric
HL_4V9F_032
NA

HL_82851.1*
1/LA/1923:1928
geometric
HL_7RQB_042
NA

HL_79299.11*
1/LA/2110:2114
homologous
HL_5TBW_157
NA
1/LA/2135:2145
homologous
HL_5TBW_158
NA
1/LA/2164:2170
homologous
HL_5TBW_159
NA
1/LA/2220:2225
homologous
HL_5TBW_160
NA
1/LA/2253:2263
homologous
HL_5TBW_161
NA
1/LA/2292:2300
homologous
HL_5TBW_162
NA
1/LA/2369:2378
homologous
HL_5TBW_163
NA
1/LA/2535:2544NANA
1/LA/2568:2573NANA
1/LA/2616:2624
homologous
HL_5TBW_167
NA
1/LA/2633:2645
homologous
HL_5TBW_168
NA
1/LA/2673:2681
homologous
HL_5TBW_169
NA
1/LA/2693:2700
homologous
HL_5TBW_170
NA
1/LA/2724:2732
homologous
HL_5TBW_171
NA
1/LA/2744:2749
homologous
HL_5TBW_172
NA
1/LA/2776:2784
homologous
HL_5TBW_173
NA
1/LA/2840:2848
homologous
HL_5TBW_174
NA
1/LA/2897:2904
homologous
HL_5TBW_175
NA
1/LA/2920:2926
homologous
HL_5TBW_176
NA
1/LA/2963:2968
homologous
HL_5TBW_177
NA
1/LA/3025:3030
homologous
HL_5TBW_178
NA
1/LA/3068:3073
homologous
HL_5TBW_179
NA
1/LA/3110:3124
homologous
HL_5TBW_180
NA
1/LA/3194:3197
homologous
HL_5TBW_181
NA
1/LA/3240:3247NANA
1/LA/3303:3311
homologous
HL_5TBW_183
NA
1/LA/3350:3353
geometric
HL_4V88_192
NA

HL_69353.7*
1/LB/36:41NANA
1/LB/88:93NANA
1/LC/47:56
geometric
HL_7A0S_001
NA

HL_29414.1*
1/LC/69:89NANA
1/LC/108:114
homologous
HL_5TBW_075
NA

HL_06569.2*
1/LC/124:129
homologous
HL_5TBW_076
NA

HL_60357.1*
1/S2/7:17NANA
1/S2/70:81
homologous
HL_4V88_187
NA

HL_07268.1*
1/S2/154:160Other HL
homologous
HL_4V88_188
NA

HL_43074.18*
1/S2/190:195
homologous
HL_4V88_189
NA

HL_39228.1*
1/S2/228:237NANA
1/S2/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA

HL_68493.6*
1/S2/276:279
geometric
HL_6U8D_003
NA

HL_18722.3*
1/S2/330:338
homologous
HL_4V88_193
NA

HL_93727.5*
1/S2/368:373
homologous
HL_4V88_194
NA

HL_18785.1*
1/S2/393:404
homologous
HL_4V88_195
NA

HL_22443.1*
1/S2/414:419UNCG
geometric
HL_4U7U_001
NA

HL_79299.11*
1/S2/450:456
homologous
HL_4V88_197
NA

HL_50374.1*
1/S2/491:496
geometric
HL_2Y8W_001
NA

HL_69459.1*
1/S2/520:532
geometric
HL_4V88_199
NA

HL_17086.2*
1/S2/569:574Other HL
homologous
HL_4V88_200
NA

HL_43074.18*
1/S2/716:722
geometric
HL_5J7L_143
NA

HL_98557.5*
1/S2/764:772
homologous
HL_4V88_203
NA

HL_72066.1*
1/S2/777:783NANA
1/S2/827:845NANA
1/S2/900:909
homologous
HL_4V88_206
NA

HL_87219.4*
1/S2/937:942Other HL
homologous
HL_4V88_207
NA

HL_43074.18*
1/S2/997:1007
homologous
HL_4V88_208
NA

HL_87219.4*
1/S2/1055:1064
homologous
HL_5TBW_212
NA
1/S2/1084:1089Other HL
homologous
HL_4V88_210
NA

HL_43074.18*
1/S2/1121:1126GNRA
homologous
HL_4V88_211
NA

HL_43074.18*
1/S2/1188:1197
homologous
HL_4V88_212
NA

HL_96854.1*
1/S2/1238:1247
homologous
HL_4V88_213
NA

HL_30819.1*
1/S2/1296:1301GNRA
homologous
HL_4V88_214
NA

HL_43074.18*
1/S2/1309:1316
homologous
HL_4V88_215
NA

HL_54035.7*
1/S2/1359:1364
homologous
HL_4V88_216
NA

HL_82678.2*
1/S2/1396:1402
homologous
HL_4V88_217
NA

HL_67216.5*
1/S2/1501:1506GNRA
homologous
HL_4V88_218
NA

HL_43074.18*
1/S2/1550:1561
homologous
HL_4V88_219
NA

HL_32458.3*
1/S2/1594:1602
homologous
HL_4V88_220
NA

HL_01181.4*
1/S2/1698:1703NANA
1/S2/1778:1783Other HL
homologous
HL_4V88_222
NA

HL_43074.18*
1/Sm/13:23NANA
1/Sm/32:40NANA
1/Sm/54:62NANA
1/Sn/13:22NANA
1/Sn/31:39NANA
1/Sn/53:61NANA

Problematic loops

#loop idProblemSequence
HL_7NRD_044
geometric
HL_5TBW_044
HL_7NRD_052NA

Valid loops

#loop idlocationannotation
(mapped to, source)
motif group
(similar to)
1/LA/3:4,
1/LC/155:156
NANA
1/LA/7:8,
1/LC/150:152
Single bulged C
homologous
IL_5TBW_002
NA

IL_61258.10*
1/LA/13:15,
1/LC/144:145
Single bulged U
homologous
IL_5TBW_003
NA

IL_83039.11*
1/LA/27:28,
1/LA/56:58

homologous
IL_5TBW_240
NA
1/LA/31:38,
1/LA/45:53
tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA

IL_22863.1*
1/LA/82:89,
1/LA/97:103

homologous
IL_5TBW_242
NA
1/LA/123:124,
1/LA/144:149

geometric
IL_5TBW_007
NA

IL_19724.1*
1/LA/125:127,
1/LA/141:143

homologous
IL_5TBW_244
NA
1/LA/163:167,
1/LA/255:258
NANA
1/LA/169:171,
1/LA/247:253
NANA
1/LA/171:173,
1/LA/245:247

geometric
IL_1Y27_001
NA

IL_01312.13*
1/LA/177:178,
1/LA/238:241
NANA
1/LA/189:191,
1/LA/204:205

homologous
IL_5TBW_248
NA
1/LA/337:339,
1/LC/25:26
Single bulged A
homologous
IL_5TBW_013
NA

IL_80007.16*
1/LA/376:379,
1/LA/390:403

geometric
IL_5TBW_014
NA

IL_60992.5*
1/LA/404:410,
1/LC/13:19
Triple sheared with non-canonical cWW
geometric
IL_4V9F_001
NA

IL_66414.5*
1/LA/429:431,
1/LA/628:630

homologous
IL_5TBW_252
NA
1/LA/512:513,
1/LA/577:579

homologous
IL_5TBW_254
NA
1/LA/517:525,
1/LA/567:573

homologous
IL_5TBW_255
NA
1/LA/531:538,
1/LA/553:561

homologous
IL_5TBW_256
NA
1/LA/668:670,
1/LA/792:794

homologous
IL_5TBW_257
NA
1/LA/680:684,
1/LA/696:700

homologous
IL_5TBW_258
NA
1/LA/725:728,
1/LA/741:745

homologous
IL_5TBW_259
NA
1/LA/752:753,
1/LA/779:781

homologous
IL_5TBW_260
NA
1/LA/755:756,
1/LA/775:777

homologous
IL_5TBW_261
NA
1/LA/758:763,
1/LA/768:773

homologous
IL_5TBW_262
NA
1/LA/803:805,
1/LA/938:940

homologous
IL_5TBW_263
NA
1/LA/805:809,
1/LA/931:938

geometric
IL_5TBW_028
NA

IL_17470.5*
1/LA/833:838,
1/LA/855:861

geometric
IL_4V88_462
NA

IL_19954.1*
1/LA/869:873,
1/LA/887:890
NANA
1/LA/873:875,
1/LA/886:887

homologous
IL_5TBW_268
NA
1/LA/907:909,
1/LA/919:923
Multiple bulged bases
geometric
IL_5TBW_033
NA

IL_90991.5*
1/LA/954:956,
1/LA/965:967

homologous
IL_5TBW_270
NA
1/LA/969:970,
1/LA/1111:1113

homologous
IL_5TBW_271
NA
1/LA/977:982,
1/LA/1101:1104
NANA
1/LA/983:985,
1/LA/1099:1100

homologous
IL_5TBW_273
NA
1/LA/991:997,
1/LA/1052:1058
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5TBW_038
NA

IL_93830.2*
1/LA/997:998,
1/LA/1050:1052

homologous
IL_5TBW_275
NA
1/LA/999:1004,
1/LA/1046:1049

homologous
IL_5TBW_276
NA
1/LA/1006:1009,
1/LA/1041:1044
Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA

IL_85877.10*
1/LA/1009:1011,
1/LA/1039:1041

homologous
IL_5TBW_278
NA
1/LA/1014:1018,
1/LA/1034:1036
NANA
1/LA/1069:1071,
1/LA/1087:1089

homologous
IL_5TBW_280
NA
1/LA/1074:1076,
1/LA/1083:1084

homologous
IL_5TBW_281
NA
1/LA/1120:1122,
1/LA/1136:1138

homologous
IL_5TBW_282
NA
1/LA/1167:1171,
1/LA/1328:1332

homologous
IL_5TBW_284
NA
1/LA/1173:1180,
1/LA/1325:1326

homologous
IL_5TBW_285
NA
1/LA/1180:1182,
1/LA/1324:1325
Single bulged U
geometric
IL_7A0S_035
NA

IL_83039.11*
1/LA/1187:1194,
1/LA/1314:1319

geometric
IL_5TBW_051
NA

IL_17971.1*
1/LA/1194:1205,
1/LA/1299:1314

homologous
IL_5TBW_288
NA
1/LA/1207:1209,
1/LA/1296:1297

homologous
IL_5TBW_289
NA
1/LA/1218:1226,
1/LA/1283:1287

homologous
IL_5TBW_290
NA
1/LA/1234:1239,
1/LA/1249:1254
NANA
1/LA/1262:1266,
1/LA/1275:1277
Major groove platform with extra cWW
geometric
IL_1MMS_002
NA

IL_95485.6*
1/LA/1376:1378,
1/LA/1428:1431

homologous
IL_5TBW_293
NA
1/LA/1385:1387,
1/LA/1420:1421

homologous
IL_5TBW_294
NA
1/LA/1388:1395,
1/LA/1415:1419

homologous
IL_5TBW_295
NA
1/LA/1398:1400,
1/LA/1411:1412

homologous
IL_5TBW_296
NA
1/LA/1444:1450,
1/LA/2354:2359

homologous
IL_5TBW_297
NA
1/LA/1500:1505,
1/LA/1513:1516

homologous
IL_5TBW_298
NA
1/LA/1532:1536,
1/LA/1585:1590

homologous
IL_5TBW_299
NA
1/LA/1561:1562,
1/LA/1577:1579
Single stack bend
geometric
IL_7A0S_054
NA

IL_04038.4*
1/LA/1618:1621,
1/LA/1824:1826

homologous
IL_5TBW_300
NA
1/LA/1623:1624,
1/LA/1819:1822
Multiple bulged bases
geometric
IL_4V9F_021
NA

IL_13730.12*
1/LA/1627:1631,
1/LA/1811:1816

homologous
IL_5TBW_302
NA
1/LA/1645:1649,
1/LA/1806:1810
Triple sheared
geometric
IL_5TBW_067
NA

IL_56467.6*
1/LA/1661:1663,
1/LA/1786:1788

homologous
IL_5TBW_304
NA
1/LA/1669:1670,
1/LA/1778:1780
Single bulged C
geometric
IL_5TBW_069
NA

IL_61258.10*
1/LA/1670:1671,
1/LA/1776:1778

homologous
IL_5TBW_306
NA
1/LA/1694:1698,
1/LA/1747:1752

homologous
IL_5TBW_307
NA
1/LA/1702:1707,
1/LA/1737:1743

homologous
IL_5TBW_308
NA
1/LA/1711:1717,
1/LA/1727:1733

homologous
IL_5TBW_309
NA
1/LA/1883:1889,
1/LA/2346:2349

homologous
IL_5TBW_310
NA
1/LA/1895:1897,
1/LA/2338:2340

homologous
IL_5TBW_311
NA
1/LA/1898:1901,
1/LA/2336:2337
Major groove platform; stack outside cWW
geometric
IL_4V9F_008
NA

IL_70995.6*
1/LA/1901:1906,
1/LA/2333:2336

homologous
IL_5TBW_313
NA
1/LA/1918:1923,
1/LA/1928:1934

homologous
IL_5TBW_314
NA
1/LA/1940:1942,
1/LA/2106:2108

homologous
IL_5TBW_315
NA
1/LA/1947:1948,
1/LA/2098:2101

homologous
IL_5TBW_316
NA
1/LA/1951:1953,
1/LA/2094:2095
Single stack bend
geometric
IL_7RQB_005
NA

IL_04038.4*
1/LA/2128:2129,
1/LA/2323:2325

homologous
IL_5TBW_318
NA
1/LA/2156:2161,
1/LA/2173:2180

homologous
IL_5TBW_319
NA
1/LA/2196:2199,
1/LA/2245:2246

homologous
IL_5TBW_320
NA
1/LA/2200:2201,
1/LA/2241:2244

homologous
IL_5TBW_321
NA
1/LA/2204:2206,
1/LA/2237:2238
Single stack bend
geometric
IL_4WF9_089
NA

IL_04038.4*
1/LA/2206:2210,
1/LA/2235:2237
Decoding loop related
geometric
IL_3C3Z_002
NA

IL_04038.4*
1/LA/2211:2217,
1/LA/2228:2234

homologous
IL_5TBW_324
NA
1/LA/2276:2277,
1/LA/2307:2310
Multiple bulged bases
geometric
IL_5TBW_089
NA

IL_69632.1*
1/LA/2277:2288,
1/LA/2304:2307

homologous
IL_5TBW_326
NA
1/LA/2391:2394,
1/LA/2986:2988

homologous
IL_5TBW_327
NA
1/LA/2396:2398,
1/LA/2981:2984

homologous
IL_5TBW_328
NA
1/LA/2409:2411,
1/LA/2811:2812

homologous
IL_5TBW_329
NA
1/LA/2412:2413,
1/LA/2807:2810

homologous
IL_5TBW_330
NA
1/LA/2423:2425,
1/LA/2604:2607

homologous
IL_5TBW_331
NA
1/LA/2444:2446,
1/LA/2500:2503
NANA
1/LA/2520:2526,
1/LA/2584:2587

homologous
IL_5TBW_332
NA
1/LA/2614:2615,
1/LA/2625:2627

homologous
IL_5TBW_333
NA
1/LA/2666:2668,
1/LA/2686:2690
Isolated tHS basepair with bulges
geometric
IL_4V9F_080
NA

IL_38958.6*
1/LA/2718:2721,
1/LA/2735:2738

homologous
IL_5TBW_335
NA
1/LA/2770:2773,
1/LA/2787:2788

homologous
IL_5TBW_336
NA
1/LA/2823:2824,
1/LA/2865:2867
Major groove platform
geometric
IL_5TBW_102
NA

IL_80663.10*
1/LA/2824:2828,
1/LA/2862:2865
NANA
1/LA/2828:2830,
1/LA/2858:2862
Major groove minor groove platform with extra cWW
geometric
IL_4V9F_084
NA

IL_96042.4*
1/LA/2835:2839,
1/LA/2849:2853

homologous
IL_5TBW_341
NA
1/LA/2876:2877,
1/LA/2949:2951

homologous
IL_5TBW_342
NA
1/LA/2879:2881,
1/LA/2943:2947
Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA

IL_01312.13*
1/LA/2881:2882,
1/LA/2940:2943

homologous
IL_5TBW_344
NA
1/LA/2889:2891,
1/LA/2912:2914

geometric
IL_5TBW_110
NA

IL_01312.13*
1/LA/2891:2892,
1/LA/2909:2912
Minor groove platform with intercalation
geometric
IL_5TBW_111
NA

IL_95601.1*
1/LA/2918:2920,
1/LA/2926:2928

geometric
IL_5Y7M_007
NA

IL_01312.13*
1/LA/2960:2961,
1/LA/2970:2972
Single bulged A
geometric
IL_7RQB_101
NA

IL_80007.16*
1/LA/3004:3007,
1/LA/3139:3144

homologous
IL_5TBW_349
NA
1/LA/3012:3014,
1/LA/3040:3042

homologous
IL_5TBW_350
NA
1/LA/3018:3025,
1/LA/3030:3036
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA

IL_04346.5*
1/LA/3047:3051,
1/LA/3091:3094

homologous
IL_5TBW_352
NA
1/LA/3054:3059,
1/LA/3084:3088

homologous
IL_5TBW_353
NA
1/LA/3063:3064,
1/LA/3077:3080

homologous
IL_5TBW_354
NA
1/LA/3103:3107,
1/LA/3127:3131

homologous
IL_5TBW_355
NA
1/LA/3158:3159,
1/LA/3291:3293
Single stack bend
geometric
IL_7A0S_054
NA

IL_04038.4*
1/LA/3164:3166,
1/LA/3284:3286

geometric
IL_4V9F_105
NA

IL_01312.13*
1/LA/3168:3170,
1/LA/3280:3282

homologous
IL_5TBW_357
NA
1/LA/3177:3179,
1/LA/3210:3211

homologous
IL_5TBW_358
NA
1/LA/3179:3188,
1/LA/3204:3210

geometric
IL_5TBW_124
NA

IL_56867.1*
1/LA/3193:3194,
1/LA/3197:3199
Single bulged U
geometric
IL_5TBW_125
NA

IL_83039.11*
1/LA/3225:3229,
1/LA/3258:3260

homologous
IL_5TBW_361
NA
1/LA/3233:3235,
1/LA/3252:3254

geometric
IL_4M4O_002
NA

IL_01312.13*
1/LA/3235:3238,
1/LA/3249:3252

homologous
IL_5TBW_363
NA
1/LA/3300:3303,
1/LA/3311:3314
Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA

IL_85877.10*
1/LA/3318:3320,
1/LA/3387:3388

homologous
IL_5TBW_365
NA
1/LA/3324:3325,
1/LA/3381:3383

homologous
IL_5TBW_366
NA
1/LA/3328:3330,
1/LA/3373:3378

homologous
IL_5TBW_367
NA
1/LA/3332:3337,
1/LA/3367:3371

homologous
IL_5TBW_368
NA
1/LA/3340:3342,
1/LA/3363:3364

homologous
IL_5TBW_369
NA
1/LA/3342:3345,
1/LA/3360:3363
tWS-tSW
geometric
IL_5TBW_135
NA

IL_09705.7*
1/LA/3349:3350,
1/LA/3353:3356

homologous
IL_5TBW_371
NA
1/LB/15:16,
1/LB/63:65
NANA
1/LB/21:27,
1/LB/53:58
NANA
1/LB/28:29,
1/LB/49:52
NANA
1/LB/29:30,
1/LB/47:49
NANA
1/LB/32:36,
1/LB/41:45
NANA
1/LB/72:80,
1/LB/100:106
NANA
1/LB/84:87,
1/LB/94:96
NANA
1/LC/64:66,
1/LC/93:96
Isolated non-canonical cWW with bulges
homologous
IL_5TBW_145
NA

IL_55456.1*
1/LC/68:69,
1/LC/89:91
Single bulged U
geometric
IL_5TBW_146
NA

IL_83039.11*
1/S2/24:26,
1/S2/600:601
Single bulged C
homologous
IL_4V88_384
NA

IL_61258.10*
1/S2/35:37,
1/S2/471:473
UU cWW
geometric
IL_4ZC7_004
NA

IL_01312.13*
1/S2/42:48,
1/S2/431:433

homologous
IL_4V88_387
NA

IL_34626.4*
1/S2/50:52,
1/S2/428:429
Minor groove platform
homologous
IL_4V88_388
NA

IL_06437.11*
1/S2/58:63,
1/S2/87:89

homologous
IL_4V88_389
NA

IL_96451.1*
1/S2/64:69,
1/S2/82:86

homologous
IL_4V88_390
NA

IL_59423.1*
1/S2/109:112,
1/S2/302:305
Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA

IL_85877.10*
1/S2/113:116,
1/S2/300:301
Multiple bulged bases
homologous
IL_4V88_392
NA

IL_13730.12*
1/S2/117:122,
1/S2/295:299

homologous
IL_4V88_393
NA

IL_76386.1*
1/S2/143:149,
1/S2/165:172
tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA

IL_92440.5*
1/S2/150:152,
1/S2/162:164
Isolated cWH basepair
geometric
IL_6RA4_002
NA

IL_42589.6*
1/S2/186:189,
1/S2/196:199
Double sheared
homologous
IL_4V88_396
NA

IL_09705.7*
1/S2/204:206,
1/S2/259:263
Major groove platform with extra cWW
homologous
IL_4V88_397
NA

IL_95485.6*
1/S2/206:208,
1/S2/257:259

geometric
IL_3TD0_001
NA

IL_01312.13*
1/S2/270:273,
1/S2/283:285

homologous
IL_4V88_400
NA

IL_05922.1*
1/S2/275:276,
1/S2/279:281
Single bulged U
homologous
IL_4V88_401
NA

IL_83039.11*
1/S2/311:316,
1/S2/348:355
Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA

IL_29549.9*
1/S2/318:323,
1/S2/345:346

homologous
IL_4V88_403
NA

IL_55658.1*
1/S2/363:365,
1/S2/376:381

homologous
IL_4V88_404
NA

IL_46732.1*
1/S2/389:391,
1/S2/406:408
Isolated cWH basepair
homologous
IL_4V88_405
NA

IL_42589.6*
1/S2/411:414,
1/S2/419:422
Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
NA

IL_85877.10*
1/S2/439:441,
1/S2/463:464
Single bulged U
homologous
IL_4V88_407
NA

IL_83039.11*
1/S2/443:447,
1/S2/460:461
C-loop
geometric
IL_4LFB_015
NA

IL_63596.4*
1/S2/447:448,
1/S2/458:460
Single bulged G
geometric
IL_5J7L_019
NA

IL_59137.10*
1/S2/480:483,
1/S2/504:508
NANA
1/S2/517:518,
1/S2/533:535
Minor groove platform
geometric
IL_4LFB_004
NA

IL_06437.11*
1/S2/518:520,
1/S2/532:533
Minor groove platform
homologous
IL_4V88_412
NA

IL_06437.11*
1/S2/550:557,
1/S2/587:588
SSU/LSU pseudoknot
geometric
IL_4V88_413
NA

IL_15861.6*
1/S2/557:559,
1/S2/586:587
Single bulged U
homologous
IL_4V88_414
NA

IL_83039.11*
1/S2/562:568,
1/S2/575:583

homologous
IL_4V88_415
NA

IL_04667.1*
1/S2/616:622,
1/S2/1104:1105

homologous
IL_4V88_416
NA

IL_12418.1*
1/S2/624:626,
1/S2/973:975

homologous
IL_4V88_417
NA

IL_01312.13*
1/S2/627:631,
1/S2/968:972
tSH-tHW-tHS
homologous
IL_4V88_418
NA

IL_39521.5*
1/S2/646:648,
1/S2/686:688

geometric
IL_3DIL_006
NA

IL_01312.13*
1/S2/648:650,
1/S2/685:686
Single stack bend
geometric
IL_4V9F_005
NA

IL_04038.4*
1/S2/650:651,
1/S2/683:685
Single stack bend
geometric
IL_7RQB_091
NA

IL_04038.4*
1/S2/651:658,
1/S2/676:683
NANA
1/S2/746:747,
1/S2/802:805
Major groove minor groove platform; mini C-loop
homologous
IL_4V88_423
NA

IL_09061.4*
1/S2/748:750,
1/S2/799:801

homologous
IL_4V88_424
NA

IL_01312.13*
1/S2/751:759,
1/S2/791:798

homologous
IL_4V88_425
NA

IL_69091.1*
1/S2/816:822,
1/S2/850:857
NANA
1/S2/865:866,
1/S2/962:965
Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA

IL_70995.6*
1/S2/868:870,
1/S2/957:960

geometric
IL_1NBS_006
NA

IL_01312.13*
1/S2/871:874,
1/S2/953:956
Tandem non-canonical cWW pairs
homologous
IL_4V88_430
NA

IL_85877.10*
1/S2/874:878,
1/S2/950:953
Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA

IL_85877.10*
1/S2/885:888,
1/S2/924:927
Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA

IL_85877.10*
1/S2/893:899,
1/S2/910:919

homologous
IL_5TBW_430
NA
1/S2/985:990,
1/S2/1014:1016
Other IL
geometric
IL_4V88_435
NA

IL_51590.1*
1/S2/990:994,
1/S2/1010:1014
tSH-tHW-tHS
homologous
IL_4V88_436
NA

IL_39521.5*
1/S2/1034:1036,
1/S2/1095:1101

homologous
IL_4V88_437
NA

IL_19557.1*
1/S2/1041:1044,
1/S2/1074:1077
Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA

IL_85877.10*
1/S2/1051:1053,
1/S2/1066:1067
Single bulged U
geometric
IL_3WBM_001
NA

IL_83039.11*
1/S2/1111:1118,
1/S2/1129:1134
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA

IL_24606.1*
1/S2/1146:1147,
1/S2/1630:1632
Single bulged A
homologous
IL_4V88_441
NA

IL_80007.16*
1/S2/1149:1151,
1/S2/1627:1628
Single bulged G
homologous
IL_4V88_442
NA

IL_59137.10*
1/S2/1157:1160,
1/S2/1617:1621
C-loop
homologous
IL_4V88_443
NA

IL_63596.4*
1/S2/1173:1175,
1/S2/1464:1466

homologous
IL_4V88_444
NA

IL_01312.13*
1/S2/1178:1179,
1/S2/1459:1461
Minor groove platform
homologous
IL_4V88_445
NA

IL_06437.11*
1/S2/1213:1215,
1/S2/1448:1450

homologous
IL_4V88_446
NA

IL_01312.13*
1/S2/1224:1233,
1/S2/1252:1259
NANA
1/S2/1234:1236,
1/S2/1249:1251

homologous
IL_4V88_448
NA

IL_01312.13*
1/S2/1268:1270,
1/S2/1440:1441
Single bulged U
homologous
IL_4V88_449
NA

IL_83039.11*
1/S2/1271:1276,
1/S2/1436:1439
Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA

IL_85877.10*
1/S2/1276:1278,
1/S2/1430:1436
Minor groove platform with extra cWW
geometric
IL_4V88_451
NA

IL_09768.1*
1/S2/1280:1281,
1/S2/1426:1428
Single bulged A
homologous
IL_4V88_452
NA

IL_80007.16*
1/S2/1290:1292,
1/S2/1323:1325
Isolated cWH basepair
homologous
IL_4V88_453
NA

IL_42589.6*
1/S2/1306:1308,
1/S2/1317:1318
Minor groove platform
homologous
IL_4V88_454
NA

IL_06437.11*
1/S2/1339:1342,
1/S2/1383:1385

homologous
IL_4V88_455
NA

IL_01312.13*
1/S2/1345:1348,
1/S2/1377:1380
Minor groove platform
homologous
IL_4V88_456
NA

IL_69507.1*
1/S2/1352:1354,
1/S2/1369:1373

homologous
IL_4V88_457
NA

IL_01312.13*
1/S2/1389:1391,
1/S2/1407:1412
Major groove platform; stack outside cWW
homologous
IL_4V88_458
NA

IL_60171.1*
1/S2/1480:1487,
1/S2/1519:1527

homologous
IL_4V88_459
NA

IL_69573.1*
1/S2/1488:1494,
1/S2/1513:1518

homologous
IL_4V88_460
NA

IL_75461.2*
1/S2/1495:1498,
1/S2/1509:1512
Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA

IL_85877.10*
1/S2/1540:1545,
1/S2/1566:1571

homologous
IL_4V88_462
NA

IL_19954.1*
1/S2/1636:1638,
1/S2/1764:1767

geometric
IL_4V88_463
NA

IL_36143.2*
1/S2/1638:1641,
1/S2/1760:1764
NANA
1/S2/1642:1644,
1/S2/1757:1759

homologous
IL_4V88_465
NA

IL_01312.13*
1/S2/1644:1647,
1/S2/1753:1757
NANA
1/S2/1650:1652,
1/S2/1748:1750
AA cWW
homologous
IL_4V88_467
NA

IL_01312.13*
1/S2/1653:1656,
1/S2/1744:1747
Double sheared
homologous
IL_4V88_468
NA

IL_09705.7*
1/S2/1656:1658,
1/S2/1743:1744
Single bulged U
geometric
IL_4V88_469
NA

IL_21340.1*
1/S2/1665:1667,
1/S2/1734:1736

homologous
IL_4V88_470
NA

IL_01312.13*
1/S2/1669:1672,
1/S2/1729:1732
Double sheared
geometric
IL_4V88_471
NA

IL_09705.7*
1/S2/1672:1674,
1/S2/1727:1729

homologous
IL_4V88_472
NA

IL_01312.13*
1/S2/1675:1678,
1/S2/1723:1726
Tandem non-canonical cWW pairs
homologous
IL_4V88_473
NA

IL_85877.10*
1/S2/1678:1682,
1/S2/1719:1723
Triple sheared
geometric
IL_4V88_474
NA

IL_56467.6*
1/S2/1688:1690,
1/S2/1711:1713

geometric
IL_