7ZW0 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7ZW0_002 | 1/2/70:81 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_7ZW0_003 | 1/2/154:160 | Other HL Not in a motif group | geometric HL_4V88_188 HL_76539.2 | |
| HL_7ZW0_004 | 1/2/190:195 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
| HL_7ZW0_006 | 1/2/243:250 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V88_191 HL_27930.1 | |
| HL_7ZW0_007 | 1/2/276:279 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_98426.1 | |
| HL_7ZW0_008 | 1/2/330:338 | No text annotation Not in a motif group | geometric HL_4V88_193 HL_69023.2 | |
| HL_7ZW0_009 | 1/2/368:373 | No text annotation Not in a motif group | geometric HL_4V88_194 HL_50142.2 | |
| HL_7ZW0_010 | 1/2/393:404 | No text annotation Not in a motif group | geometric HL_4V88_195 HL_84288.1 | |
| HL_7ZW0_011 | 1/2/414:419 | UNCG Not in a motif group | geometric HL_4V88_196 HL_03562.2 | |
| HL_7ZW0_012 | 1/2/450:456 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_7ZW0_013 | 1/2/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_7ZW0_021 | 1/2/937:942 | Other HL Not in a motif group | geometric HL_4V88_207 HL_87030.2 | |
| HL_7ZW0_024 | 1/2/1084:1089 | Other HL Not in a motif group | geometric HL_4V88_210 HL_42097.1 | |
| HL_7ZW0_034 | 1/2/1594:1602 | No text annotation Not in a motif group | geometric HL_4V88_220 HL_60812.1 | |
| HL_7ZW0_037 | 1/LA/38:45 | No text annotation Not in a motif group | geometric HL_5TBW_001 HL_06192.2 | |
| HL_7ZW0_038 | 1/LA/69:74 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_7ZW0_039 | 1/LA/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_7ZW0_040 | 1/LA/132:136 | No text annotation Not in a motif group | homologous HL_8C3A_004 HL_98426.1 | |
| HL_7ZW0_041 | 1/LA/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_7ZW0_042 | 1/LA/208:212 | No text annotation Not in a motif group | homologous HL_8C3A_006 HL_98984.2 | |
| HL_7ZW0_043 | 1/LA/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_7ZW0_044 | 1/LA/278:287 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_7ZW0_045 | 1/LA/303:312 | No text annotation Not in a motif group | homologous HL_8C3A_009 HL_12078.2 | |
| HL_7ZW0_046 | 1/LA/357:362 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_7ZW0_047 | 1/LA/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.1 | |
| HL_7ZW0_048 | 1/LA/543:548 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_86373.2 | |
| HL_7ZW0_049 | 1/LA/599:604 | No text annotation Not in a motif group | homologous HL_8C3A_013 HL_56691.2 | |
| HL_7ZW0_050 | 1/LA/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_7ZW0_051 | 1/LA/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_7ZW0_052 | 1/LA/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_7ZW0_053 | 1/LA/732:737 | GNRA Not in a motif group | geometric HL_2OIU_001 HL_42097.1 | |
| HL_7ZW0_054 | 1/LA/763:768 | No text annotation Not in a motif group | geometric HL_5TBW_018 HL_34168.2 | |
| HL_7ZW0_055 | 1/LA/844:849 | No text annotation Not in a motif group | homologous HL_8C3A_019 HL_42097.1 | |
| HL_7ZW0_056 | 1/LA/876:885 | No text annotation Not in a motif group | homologous HL_8C3A_020 HL_39334.6 | |
| HL_7ZW0_057 | 1/LA/910:918 | No text annotation Not in a motif group | homologous HL_8C3A_021 HL_33817.1 | |
| HL_7ZW0_058 | 1/LA/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_7ZW0_059 | 1/LA/1023:1029 | GNRA Not in a motif group | geometric HL_5TBW_023 HL_42097.1 | |
| HL_7ZW0_060 | 1/LA/1076:1083 | No text annotation Not in a motif group | geometric HL_5TBW_024 HL_71554.2 | |
| HL_7ZW0_061 | 1/LA/1126:1132 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_42097.1 | |
| HL_7ZW0_062 | 1/LA/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_7ZW0_063 | 1/LA/1239:1249 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_03562.2 | |
| HL_7ZW0_064 | 1/LA/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_7ZW0_065 | 1/LA/1347:1357 | No text annotation Not in a motif group | geometric HL_4OOG_001 HL_65572.2 | |
| HL_7ZW0_066 | 1/LA/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_7ZW0_067 | 1/LA/1462:1470 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_89380.2 | |
| HL_7ZW0_068 | 1/LA/1506:1512 | No text annotation Not in a motif group | homologous HL_8C3A_032 HL_46680.1 | |
| HL_7ZW0_069 | 1/LA/1544:1549 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_7ZW0_070 | 1/LA/1566:1572 | No text annotation Not in a motif group | ||
| HL_7ZW0_071 | 1/LA/1599:1608 | No text annotation Not in a motif group | homologous HL_8C3A_035 HL_69023.2 | |
| HL_7ZW0_072 | 1/LA/1634:1639 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_42097.1 | |
| HL_7ZW0_073 | 1/LA/1680:1688 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_60812.1 | |
| HL_7ZW0_074 | 1/LA/1719:1725 | No text annotation Not in a motif group | homologous HL_8C3A_038 HL_86373.2 | |
| HL_7ZW0_075 | 1/LA/1759:1766 | No text annotation Not in a motif group | ||
| HL_7ZW0_076 | 1/LA/1792:1796 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.1 | |
| HL_7ZW0_077 | 1/LA/1844:1851 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.2 | |
| HL_7ZW0_078 | 1/LA/1862:1868 | No text annotation Not in a motif group | homologous HL_8C3A_042 HL_42097.1 | |
| HL_7ZW0_079 | 1/LA/1923:1928 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_7ZW0_081 | 1/LA/2110:2114 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_7ZW0_082 | 1/LA/2135:2145 | No text annotation Not in a motif group | homologous HL_8C3A_046 HL_43613.5 | |
| HL_7ZW0_083 | 1/LA/2164:2170 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_7ZW0_084 | 1/LA/2220:2225 | No text annotation Not in a motif group | homologous HL_8C3A_048 HL_42097.1 | |
| HL_7ZW0_085 | 1/LA/2253:2263 | No text annotation Not in a motif group | homologous HL_8C3A_049 HL_71924.2 | |
| HL_7ZW0_086 | 1/LA/2292:2300 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.1 | |
| HL_7ZW0_087 | 1/LA/2369:2378 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_7ZW0_088 | 1/LA/2469:2476 | No text annotation Not in a motif group | ||
| HL_7ZW0_089 | 1/LA/2568:2573 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_7ZW0_090 | 1/LA/2616:2624 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_7ZW0_091 | 1/LA/2633:2645 | No text annotation Not in a motif group | homologous HL_8C3A_056 HL_19870.6 | |
| HL_7ZW0_092 | 1/LA/2673:2681 | No text annotation Not in a motif group | ||
| HL_7ZW0_093 | 1/LA/2693:2700 | No text annotation Not in a motif group | homologous HL_8C3A_058 HL_12078.2 | |
| HL_7ZW0_094 | 1/LA/2724:2732 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_7ZW0_095 | 1/LA/2744:2749 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.1 | |
| HL_7ZW0_096 | 1/LA/2776:2784 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.1 | |
| HL_7ZW0_097 | 1/LA/2840:2848 | No text annotation Not in a motif group | homologous HL_8C3A_062 HL_06192.2 | |
| HL_7ZW0_098 | 1/LA/2897:2904 | No text annotation Not in a motif group | homologous HL_8C3A_063 HL_88526.2 | |
| HL_7ZW0_099 | 1/LA/2920:2926 | No text annotation Not in a motif group | homologous HL_8C3A_064 HL_43656.2 | |
| HL_7ZW0_100 | 1/LA/2963:2968 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_42097.1 | |
| HL_7ZW0_101 | 1/LA/3025:3030 | GNRA Not in a motif group | geometric HL_5TBW_065 HL_42097.1 | |
| HL_7ZW0_102 | 1/LA/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_7ZW0_103 | 1/LA/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_7ZW0_104 | 1/LA/3194:3197 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_98426.1 | |
| HL_7ZW0_105 | 1/LA/3240:3247 | No text annotation Not in a motif group | geometric HL_5TBW_069 HL_14449.2 | |
| HL_7ZW0_106 | 1/LA/3303:3311 | No text annotation Not in a motif group | homologous HL_8C3A_071 HL_27930.1 | |
| HL_7ZW0_107 | 1/LA/3350:3353 | No text annotation Not in a motif group | homologous HL_8C3A_072 HL_53837.1 | |
| HL_7ZW0_108 | 1/LC/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_87939.1 | |
| HL_7ZW0_109 | 1/LC/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_7ZW0_110 | 1/LD/69:89 | No text annotation Not in a motif group | ||
| HL_7ZW0_111 | 1/LD/108:114 | No text annotation Not in a motif group | geometric HL_5TBW_075 HL_87939.1 | |
| HL_7ZW0_112 | 1/LD/124:129 | No text annotation Not in a motif group | geometric HL_5TBW_076 HL_96851.2 | |
| HL_7ZW0_113 | 1/sl/13:22 | No text annotation Not in a motif group | ||
| HL_7ZW0_114 | 1/sl/31:39 | tRNA anticodon loop Not in a motif group | geometric HL_6UFG_007 HL_53597.2 | |
| HL_7ZW0_115 | 1/sl/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_5HR7_006 HL_22280.1 | |
| HL_7ZW0_116 | 1/sn/13:22 | No text annotation Not in a motif group | ||
| HL_7ZW0_117 | 1/sn/31:39 | tRNA anticodon loop Not in a motif group | geometric HL_4V90_033 HL_53597.2 | |
| HL_7ZW0_118 | 1/sn/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_6PMO_005 HL_22280.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7ZW0_001 | No text annotation | ||
| HL_7ZW0_005 | No text annotation | ||
| HL_7ZW0_014 | Other HL | ||
| HL_7ZW0_015 | No text annotation | ||
| HL_7ZW0_016 | No text annotation | ||
| HL_7ZW0_017 | No text annotation | ||
| HL_7ZW0_018 | No text annotation | ||
| HL_7ZW0_019 | No text annotation | ||
| HL_7ZW0_020 | No text annotation | ||
| HL_7ZW0_022 | No text annotation | ||
| HL_7ZW0_023 | No text annotation | ||
| HL_7ZW0_025 | GNRA | ||
| HL_7ZW0_026 | No text annotation | ||
| HL_7ZW0_027 | No text annotation | ||
| HL_7ZW0_028 | GNRA | ||
| HL_7ZW0_029 | No text annotation | ||
| HL_7ZW0_030 | No text annotation | ||
| HL_7ZW0_031 | No text annotation | ||
| HL_7ZW0_032 | GNRA | ||
| HL_7ZW0_033 | No text annotation | ||
| HL_7ZW0_035 | No text annotation | ||
| HL_7ZW0_036 | No text annotation | ||
| HL_7ZW0_080 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7ZW0_001 | 1/2/24:26, 1/2/600:601 | Single bulged C Not in a motif group | geometric IL_7KGA_004 IL_61258.12 | |
| IL_7ZW0_002 | 1/2/35:37, 1/2/471:473 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_7ZW0_003 | 1/2/37:41, 1/2/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_7ZW0_004 | 1/2/42:48, 1/2/431:433 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_7ZW0_005 | 1/2/50:52, 1/2/428:429 | Minor groove platform Not in a motif group | geometric IL_4LFB_004 IL_93353.1 | |
| IL_7ZW0_006 | 1/2/58:63, 1/2/87:89 | No text annotation Not in a motif group | geometric IL_4V88_389 IL_95004.1 | |
| IL_7ZW0_007 | 1/2/64:69, 1/2/82:86 | No text annotation Not in a motif group | geometric IL_4V88_390 IL_77691.1 | |
| IL_7ZW0_008 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_391 IL_30621.2 | |
| IL_7ZW0_009 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_7ZW0_010 | 1/2/117:122, 1/2/295:299 | No text annotation Not in a motif group | geometric IL_4V88_393 IL_64181.2 | |
| IL_7ZW0_011 | 1/2/144:149, 1/2/165:171 | tWH-tWH-tHW-tHW Not in a motif group | geometric IL_4LFB_009 IL_39753.1 | |
| IL_7ZW0_012 | 1/2/150:152, 1/2/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_6RA4_002 IL_51629.2 | |
| IL_7ZW0_013 | 1/2/186:189, 1/2/196:199 | Double sheared Not in a motif group | geometric IL_4KZD_002 IL_09705.9 | |
| IL_7ZW0_014 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.2 | |
| IL_7ZW0_015 | 1/2/206:208, 1/2/257:259 | No text annotation Not in a motif group | geometric IL_4V88_398 IL_95997.1 | |
| IL_7ZW0_016 | 1/2/265:267, 1/2/288:289 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_37497.2 | |
| IL_7ZW0_017 | 1/2/270:273, 1/2/283:285 | No text annotation Not in a motif group | geometric IL_4V88_400 IL_47298.1 | |
| IL_7ZW0_018 | 1/2/275:276, 1/2/279:281 | Single bulged U Not in a motif group | geometric IL_4V88_401 IL_83039.13 | |
| IL_7ZW0_019 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking Not in a motif group | geometric IL_4V88_402 IL_45067.2 | |
| IL_7ZW0_020 | 1/2/318:323, 1/2/345:346 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_7ZW0_022 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_405 IL_51629.2 | |
| IL_7ZW0_023 | 1/2/411:413, 1/2/420:422 | Isolated near basepair Not in a motif group | geometric IL_3NJ7_003 IL_52767.2 | |
| IL_7ZW0_024 | 1/2/439:441, 1/2/463:464 | Single bulged U Not in a motif group | geometric IL_4V88_407 IL_83039.13 | |
| IL_7ZW0_025 | 1/2/443:447, 1/2/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_7ZW0_026 | 1/2/447:448, 1/2/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_7ZW0_027 | 1/2/481:482, 1/2/505:507 | Single bulged A Not in a motif group | geometric IL_1DUQ_002 IL_37497.2 | |
| IL_7ZW0_028 | 1/2/514:516, 1/2/536:543 | No text annotation Not in a motif group | ||
| IL_7ZW0_029 | 1/2/517:518, 1/2/533:535 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_93353.1 | |
| IL_7ZW0_030 | 1/2/518:520, 1/2/532:533 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_7ZW0_034 | 1/2/616:622, 1/2/1104:1105 | No text annotation Not in a motif group | geometric IL_4V88_416 IL_69996.1 | |
| IL_7ZW0_035 | 1/2/624:626, 1/2/973:975 | No text annotation Not in a motif group | geometric IL_4V88_417 IL_95997.1 | |
| IL_7ZW0_036 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_418 IL_17136.1 | |
| IL_7ZW0_043 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.2 | |
| IL_7ZW0_044 | 1/2/868:870, 1/2/957:960 | No text annotation Not in a motif group | geometric IL_5UNE_004 IL_95997.1 | |
| IL_7ZW0_045 | 1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_7ZW0_046 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_7ZW0_047 | 1/2/885:888, 1/2/924:927 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_432 IL_30621.2 | |
| IL_7ZW0_052 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation Not in a motif group | geometric IL_4V88_437 IL_19557.3 | |
| IL_7ZW0_053 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.2 | |
| IL_7ZW0_054 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U Not in a motif group | geometric IL_3TZR_002 IL_83039.13 | |
| IL_7ZW0_058 | 1/2/1157:1160, 1/2/1617:1621 | C-loop Not in a motif group | geometric IL_4V88_443 IL_63596.6 | |
| IL_7ZW0_059 | 1/2/1173:1175, 1/2/1464:1466 | No text annotation Not in a motif group | geometric IL_4V88_444 IL_95997.1 | |
| IL_7ZW0_060 | 1/2/1178:1179, 1/2/1459:1461 | Minor groove platform Not in a motif group | geometric IL_4LFB_038 IL_42622.2 | |
| IL_7ZW0_093 | 1/LA/3:4, 1/LD/155:156 | No text annotation Not in a motif group | ||
| IL_7ZW0_094 | 1/LA/7:8, 1/LD/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_7ZW0_095 | 1/LA/13:15, 1/LD/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_7ZW0_096 | 1/LA/27:28, 1/LA/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_7ZW0_097 | 1/LA/31:38, 1/LA/45:53 | No text annotation Not in a motif group | homologous IL_8C3A_005 IL_35728.2 | |
| IL_7ZW0_098 | 1/LA/82:89, 1/LA/97:103 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_7ZW0_099 | 1/LA/123:124, 1/LA/144:149 | No text annotation Not in a motif group | homologous IL_8C3A_007 IL_19724.2 | |
| IL_7ZW0_100 | 1/LA/125:127, 1/LA/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_7ZW0_101 | 1/LA/163:165, 1/LA/257:258 | Single stack bend Not in a motif group | geometric IL_5TBW_009 IL_76488.2 | |
| IL_7ZW0_102 | 1/LA/169:170, 1/LA/248:253 | No text annotation Not in a motif group | geometric IL_5TBW_010 IL_74684.1 | |
| IL_7ZW0_103 | 1/LA/177:178, 1/LA/238:241 | Major groove platform Not in a motif group | geometric IL_4WF9_026 IL_27635.1 | |
| IL_7ZW0_104 | 1/LA/189:191, 1/LA/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_7ZW0_105 | 1/LA/337:339, 1/LD/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.2 | |
| IL_7ZW0_106 | 1/LA/376:379, 1/LA/390:403 | No text annotation Not in a motif group | homologous IL_8C3A_015 IL_60992.6 | |
| IL_7ZW0_107 | 1/LA/404:410, 1/LD/13:19 | No text annotation Not in a motif group | homologous IL_8C3A_016 IL_66414.6 | |
| IL_7ZW0_108 | 1/LA/429:431, 1/LA/628:630 | No text annotation Not in a motif group | geometric IL_5TBW_016 IL_51629.2 | |
| IL_7ZW0_110 | 1/LA/512:513, 1/LA/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.2 | |
| IL_7ZW0_111 | 1/LA/517:525, 1/LA/567:573 | No text annotation Not in a motif group | geometric IL_5TBW_019 IL_23992.1 | |
| IL_7ZW0_112 | 1/LA/531:538, 1/LA/553:561 | No text annotation Not in a motif group | geometric IL_5TBW_020 IL_07703.1 | |
| IL_7ZW0_113 | 1/LA/668:670, 1/LA/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_7ZW0_114 | 1/LA/680:684, 1/LA/696:700 | No text annotation Not in a motif group | homologous IL_8C3A_024 IL_74284.1 | |
| IL_7ZW0_115 | 1/LA/725:728, 1/LA/741:745 | No text annotation Not in a motif group | homologous IL_8C3A_025 IL_07235.1 | |
| IL_7ZW0_116 | 1/LA/752:753, 1/LA/779:781 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.2 | |
| IL_7ZW0_117 | 1/LA/755:756, 1/LA/775:777 | No text annotation Not in a motif group | homologous IL_8C3A_027 IL_83039.13 | |
| IL_7ZW0_118 | 1/LA/758:763, 1/LA/768:773 | No text annotation Not in a motif group | homologous IL_8C3A_028 IL_19954.2 | |
| IL_7ZW0_119 | 1/LA/803:805, 1/LA/938:940 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_95997.1 | |
| IL_7ZW0_120 | 1/LA/805:809, 1/LA/931:938 | No text annotation Not in a motif group | homologous IL_8C3A_030 IL_17470.6 | |
| IL_7ZW0_121 | 1/LA/833:834, 1/LA/859:861 | Single bulged G Not in a motif group | geometric IL_7A0S_017 IL_00225.2 | |
| IL_7ZW0_122 | 1/LA/834:838, 1/LA/855:859 | No text annotation Not in a motif group | homologous IL_8C3A_033 IL_56467.8 | |
| IL_7ZW0_123 | 1/LA/869:872, 1/LA/888:890 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_7ZW0_124 | 1/LA/873:875, 1/LA/886:887 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_7ZW0_125 | 1/LA/907:909, 1/LA/919:923 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_7ZW0_126 | 1/LA/954:956, 1/LA/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_7ZW0_127 | 1/LA/969:970, 1/LA/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_7ZW0_128 | 1/LA/977:982, 1/LA/1101:1104 | No text annotation Not in a motif group | ||
| IL_7ZW0_129 | 1/LA/983:985, 1/LA/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_7ZW0_130 | 1/LA/991:997, 1/LA/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5TBW_038 IL_93830.3 | |
| IL_7ZW0_131 | 1/LA/997:998, 1/LA/1050:1052 | No text annotation Not in a motif group | homologous IL_8C3A_042 IL_42622.2 | |
| IL_7ZW0_132 | 1/LA/999:1004, 1/LA/1046:1049 | No text annotation Not in a motif group | homologous IL_8C3A_043 IL_02509.1 | |
| IL_7ZW0_133 | 1/LA/1006:1009, 1/LA/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
| IL_7ZW0_134 | 1/LA/1009:1011, 1/LA/1039:1041 | No text annotation Not in a motif group | homologous IL_8C3A_045 IL_95997.1 | |
| IL_7ZW0_135 | 1/LA/1014:1018, 1/LA/1034:1036 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_7ZW0_136 | 1/LA/1069:1071, 1/LA/1087:1089 | No text annotation Not in a motif group | homologous IL_8C3A_047 IL_95997.1 | |
| IL_7ZW0_137 | 1/LA/1074:1076, 1/LA/1083:1084 | No text annotation Not in a motif group | homologous IL_8C3A_048 IL_00225.2 | |
| IL_7ZW0_138 | 1/LA/1120:1122, 1/LA/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_7ZW0_139 | 1/LA/1167:1171, 1/LA/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_7ZW0_140 | 1/LA/1173:1180, 1/LA/1325:1326 | No text annotation Not in a motif group | homologous IL_8C3A_052 IL_15861.7 | |
| IL_7ZW0_141 | 1/LA/1180:1182, 1/LA/1324:1325 | Single bulged U Not in a motif group | geometric IL_5TBW_050 IL_83039.13 | |
| IL_7ZW0_142 | 1/LA/1187:1194, 1/LA/1314:1319 | No text annotation Not in a motif group | homologous IL_8C3A_054 IL_27086.1 | |
| IL_7ZW0_143 | 1/LA/1194:1205, 1/LA/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_7ZW0_144 | 1/LA/1207:1209, 1/LA/1296:1297 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.13 | |
| IL_7ZW0_145 | 1/LA/1218:1226, 1/LA/1283:1287 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.4 | |
| IL_7ZW0_146 | 1/LA/1233:1239, 1/LA/1249:1255 | No text annotation Not in a motif group | ||
| IL_7ZW0_147 | 1/LA/1262:1266, 1/LA/1275:1277 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.2 | |
| IL_7ZW0_148 | 1/LA/1376:1378, 1/LA/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_7ZW0_149 | 1/LA/1385:1387, 1/LA/1420:1421 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_7ZW0_150 | 1/LA/1388:1395, 1/LA/1415:1419 | No text annotation Not in a motif group | homologous IL_8C3A_063 IL_70923.2 | |
| IL_7ZW0_151 | 1/LA/1398:1400, 1/LA/1411:1412 | Single bulged A Not in a motif group | geometric IL_5TBW_060 IL_37497.2 | |
| IL_7ZW0_152 | 1/LA/1444:1450, 1/LA/2354:2359 | No text annotation Not in a motif group | homologous IL_8C3A_065 IL_76042.2 | |
| IL_7ZW0_153 | 1/LA/1500:1505, 1/LA/1513:1516 | No text annotation Not in a motif group | homologous IL_8C3A_066 IL_93630.2 | |
| IL_7ZW0_154 | 1/LA/1532:1536, 1/LA/1585:1590 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_7ZW0_155 | 1/LA/1562:1566, 1/LA/1572:1577 | No text annotation Not in a motif group | ||
| IL_7ZW0_156 | 1/LA/1618:1621, 1/LA/1824:1826 | No text annotation Not in a motif group | homologous IL_8C3A_070 IL_84698.1 | |
| IL_7ZW0_157 | 1/LA/1623:1624, 1/LA/1819:1822 | Major groove platform Not in a motif group | geometric IL_4V9F_086 IL_76223.2 | |
| IL_7ZW0_158 | 1/LA/1627:1631, 1/LA/1811:1816 | No text annotation Not in a motif group | geometric IL_5TBW_066 IL_48431.1 | |
| IL_7ZW0_159 | 1/LA/1645:1649, 1/LA/1806:1810 | Triple sheared Not in a motif group | geometric IL_5TBW_067 IL_56467.8 | |
| IL_7ZW0_160 | 1/LA/1661:1663, 1/LA/1786:1788 | No text annotation Not in a motif group | homologous IL_8C3A_074 IL_95997.1 | |
| IL_7ZW0_161 | 1/LA/1669:1670, 1/LA/1778:1780 | Single bulged C Not in a motif group | geometric IL_5TBW_069 IL_61258.12 | |
| IL_7ZW0_162 | 1/LA/1670:1671, 1/LA/1776:1778 | No text annotation Not in a motif group | homologous IL_8C3A_076 IL_76488.2 | |
| IL_7ZW0_163 | 1/LA/1694:1698, 1/LA/1747:1752 | No text annotation Not in a motif group | homologous IL_8C3A_077 IL_69313.1 | |
| IL_7ZW0_164 | 1/LA/1702:1707, 1/LA/1737:1743 | No text annotation Not in a motif group | homologous IL_8C3A_078 IL_39753.1 | |
| IL_7ZW0_165 | 1/LA/1711:1717, 1/LA/1727:1733 | No text annotation Not in a motif group | homologous IL_8C3A_079 IL_60192.2 | |
| IL_7ZW0_166 | 1/LA/1883:1889, 1/LA/2346:2349 | No text annotation Not in a motif group | homologous IL_8C3A_080 IL_49460.2 | |
| IL_7ZW0_167 | 1/LA/1895:1897, 1/LA/2338:2340 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_7ZW0_168 | 1/LA/1898:1901, 1/LA/2336:2337 | No text annotation Not in a motif group | homologous IL_8C3A_082 IL_50694.2 | |
| IL_7ZW0_169 | 1/LA/1901:1906, 1/LA/2333:2336 | Intercalated tWH Not in a motif group | geometric IL_5TBW_077 IL_82842.2 | |
| IL_7ZW0_170 | 1/LA/1918:1923, 1/LA/1928:1934 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_7ZW0_171 | 1/LA/1940:1942, 1/LA/2106:2108 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_7ZW0_172 | 1/LA/1947:1948, 1/LA/2098:2101 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_7ZW0_173 | 1/LA/2128:2129, 1/LA/2323:2325 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_7ZW0_174 | 1/LA/2156:2161, 1/LA/2173:2180 | No text annotation Not in a motif group | homologous IL_8C3A_088 IL_64509.1 | |
| IL_7ZW0_175 | 1/LA/2196:2199, 1/LA/2245:2246 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_7ZW0_176 | 1/LA/2200:2201, 1/LA/2241:2244 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_7ZW0_177 | 1/LA/2204:2210, 1/LA/2235:2238 | No text annotation Not in a motif group | ||
| IL_7ZW0_178 | 1/LA/2211:2217, 1/LA/2228:2234 | No text annotation Not in a motif group | homologous IL_8C3A_093 IL_36973.6 | |
| IL_7ZW0_179 | 1/LA/2276:2277, 1/LA/2307:2310 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_089 IL_59677.2 | |
| IL_7ZW0_180 | 1/LA/2277:2288, 1/LA/2304:2307 | No text annotation Not in a motif group | homologous IL_8C3A_095 IL_81589.2 | |
| IL_7ZW0_181 | 1/LA/2391:2394, 1/LA/2986:2988 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.2 | |
| IL_7ZW0_182 | 1/LA/2396:2398, 1/LA/2981:2984 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_7ZW0_183 | 1/LA/2409:2411, 1/LA/2811:2812 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.13 | |
| IL_7ZW0_184 | 1/LA/2412:2413, 1/LA/2807:2810 | No text annotation Not in a motif group | homologous IL_8C3A_099 IL_42622.2 | |
| IL_7ZW0_185 | 1/LA/2423:2425, 1/LA/2604:2607 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_7ZW0_186 | 1/LA/2444:2449, 1/LA/2497:2503 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
| IL_7ZW0_187 | 1/LA/2451:2463, 1/LA/2492:2495 | No text annotation Not in a motif group | ||
| IL_7ZW0_188 | 1/LA/2466:2469, 1/LA/2476:2489 | No text annotation Not in a motif group | ||
| IL_7ZW0_189 | 1/LA/2520:2526, 1/LA/2584:2587 | No text annotation Not in a motif group | homologous IL_8C3A_106 IL_74114.1 | |
| IL_7ZW0_190 | 1/LA/2614:2615, 1/LA/2625:2627 | No text annotation Not in a motif group | homologous IL_8C3A_107 IL_69996.1 | |
| IL_7ZW0_191 | 1/LA/2666:2668, 1/LA/2686:2690 | No text annotation Not in a motif group | homologous IL_8C3A_108 IL_38958.7 | |
| IL_7ZW0_192 | 1/LA/2718:2721, 1/LA/2735:2738 | No text annotation Not in a motif group | homologous IL_8C3A_109 IL_30621.2 | |
| IL_7ZW0_193 | 1/LA/2770:2773, 1/LA/2787:2788 | No text annotation Not in a motif group | homologous IL_8C3A_110 IL_76488.2 | |
| IL_7ZW0_194 | 1/LA/2823:2824, 1/LA/2865:2867 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_27635.1 | |
| IL_7ZW0_195 | 1/LA/2824:2826, 1/LA/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_7ZW0_196 | 1/LA/2826:2828, 1/LA/2862:2863 | No text annotation Not in a motif group | homologous IL_8C3A_112 IL_76223.2 | |
| IL_7ZW0_197 | 1/LA/2828:2830, 1/LA/2858:2862 | No text annotation Not in a motif group | homologous IL_8C3A_113 IL_92788.2 | |
| IL_7ZW0_198 | 1/LA/2835:2839, 1/LA/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_7ZW0_199 | 1/LA/2876:2877, 1/LA/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_7ZW0_200 | 1/LA/2879:2881, 1/LA/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_7ZW0_201 | 1/LA/2881:2882, 1/LA/2940:2943 | No text annotation Not in a motif group | homologous IL_8C3A_117 IL_71530.2 | |
| IL_7ZW0_202 | 1/LA/2889:2891, 1/LA/2912:2914 | No text annotation Not in a motif group | homologous IL_8C3A_118 IL_51629.2 | |
| IL_7ZW0_203 | 1/LA/2891:2892, 1/LA/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_111 IL_95601.3 | |
| IL_7ZW0_204 | 1/LA/2918:2920, 1/LA/2926:2928 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_7ZW0_205 | 1/LA/2960:2961, 1/LA/2970:2972 | Single bulged A Not in a motif group | geometric IL_1U9S_001 IL_37497.2 | |
| IL_7ZW0_206 | 1/LA/3004:3007, 1/LA/3139:3144 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.9 | |
| IL_7ZW0_207 | 1/LA/3012:3014, 1/LA/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_7ZW0_208 | 1/LA/3018:3025, 1/LA/3030:3036 | No text annotation Not in a motif group | homologous IL_8C3A_125 IL_04346.7 | |
| IL_7ZW0_209 | 1/LA/3047:3051, 1/LA/3091:3094 | No text annotation Not in a motif group | homologous IL_8C3A_126 IL_37712.2 | |
| IL_7ZW0_210 | 1/LA/3054:3059, 1/LA/3084:3088 | No text annotation Not in a motif group | homologous IL_8C3A_127 IL_17136.1 | |
| IL_7ZW0_211 | 1/LA/3063:3064, 1/LA/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.2 | |
| IL_7ZW0_212 | 1/LA/3103:3107, 1/LA/3127:3131 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.2 | |
| IL_7ZW0_213 | 1/LA/3164:3166, 1/LA/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_7ZW0_214 | 1/LA/3168:3170, 1/LA/3280:3282 | No text annotation Not in a motif group | geometric IL_4KYY_003 IL_95997.1 | |
| IL_7ZW0_215 | 1/LA/3177:3179, 1/LA/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_7ZW0_216 | 1/LA/3179:3188, 1/LA/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_7ZW0_217 | 1/LA/3193:3194, 1/LA/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_7ZW0_218 | 1/LA/3225:3229, 1/LA/3258:3260 | No text annotation Not in a motif group | homologous IL_8C3A_133 IL_19389.6 | |
| IL_7ZW0_219 | 1/LA/3233:3235, 1/LA/3252:3254 | No text annotation Not in a motif group | geometric IL_5TBW_127 IL_95997.1 | |
| IL_7ZW0_220 | 1/LA/3235:3238, 1/LA/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4UYK_003 IL_30621.2 | |
| IL_7ZW0_221 | 1/LA/3300:3303, 1/LA/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.2 | |
| IL_7ZW0_222 | 1/LA/3318:3320, 1/LA/3387:3388 | Single bulged U Not in a motif group | geometric IL_5TBW_130 IL_83039.13 | |
| IL_7ZW0_223 | 1/LA/3324:3325, 1/LA/3381:3383 | No text annotation Not in a motif group | homologous IL_8C3A_137 IL_83039.13 | |
| IL_7ZW0_224 | 1/LA/3328:3330, 1/LA/3373:3378 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_7ZW0_225 | 1/LA/3332:3337, 1/LA/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.5 | |
| IL_7ZW0_226 | 1/LA/3340:3342, 1/LA/3363:3364 | Single bulged U Not in a motif group | geometric IL_5TBW_134 IL_83039.13 | |
| IL_7ZW0_227 | 1/LA/3342:3345, 1/LA/3360:3363 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_7ZW0_228 | 1/LA/3349:3350, 1/LA/3353:3356 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_136 IL_59677.2 | |
| IL_7ZW0_229 | 1/LC/15:16, 1/LC/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_7ZW0_230 | 1/LC/21:27, 1/LC/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_7ZW0_231 | 1/LC/28:29, 1/LC/49:52 | Minor groove platform Not in a motif group | geometric IL_5TBW_374 IL_63797.2 | |
| IL_7ZW0_232 | 1/LC/29:30, 1/LC/47:49 | Single stack bend Not in a motif group | homologous IL_5TBW_375 IL_76488.2 | |
| IL_7ZW0_233 | 1/LC/32:36, 1/LC/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.6 | |
| IL_7ZW0_234 | 1/LC/72:80, 1/LC/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_7ZW0_235 | 1/LC/84:87, 1/LC/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_7ZW0_236 | 1/LD/44:64, 1/LD/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_7ZW0_237 | 1/LD/64:66, 1/LD/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_7ZW0_238 | 1/LD/68:69, 1/LD/89:91 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 | |
| IL_7ZW0_239 | 1/sl/5:7, 1/sl/66:68 | No text annotation Not in a motif group | geometric IL_4NGF_002 IL_95997.1 | |
| IL_7ZW0_240 | 1/sn/5:7, 1/sn/66:68 | CC cWW Not in a motif group | geometric IL_4E59_001 IL_95997.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7ZW0_021 | No text annotation | ||
| IL_7ZW0_031 | SSU/LSU pseudoknot | ||
| IL_7ZW0_032 | Single bulged U | ||
| IL_7ZW0_033 | No text annotation | ||
| IL_7ZW0_037 | No text annotation | ||
| IL_7ZW0_038 | Major groove minor groove platform; mini C-loop | ||
| IL_7ZW0_039 | No text annotation | ||
| IL_7ZW0_040 | No text annotation | ||
| IL_7ZW0_041 | No text annotation | ||
| IL_7ZW0_042 | No text annotation | ||
| IL_7ZW0_048 | No text annotation | ||
| IL_7ZW0_049 | Kink-turn | ||
| IL_7ZW0_050 | Other IL | ||
| IL_7ZW0_051 | tSH-tHW-tHS | ||
| IL_7ZW0_055 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_7ZW0_056 | Single bulged A | ||
| IL_7ZW0_057 | Single bulged G | ||
| IL_7ZW0_061 | No text annotation | ||
| IL_7ZW0_062 | No text annotation | ||
| IL_7ZW0_063 | No text annotation | ||
| IL_7ZW0_064 | No text annotation | ||
| IL_7ZW0_065 | Single bulged U | ||
| IL_7ZW0_066 | Isolated cWS basepair | ||
| IL_7ZW0_067 | Minor groove platform with extra cWW | ||
| IL_7ZW0_068 | Single bulged A | ||
| IL_7ZW0_069 | Isolated cWH basepair | ||
| IL_7ZW0_070 | Minor groove platform | ||
| IL_7ZW0_071 | No text annotation | ||
| IL_7ZW0_072 | Minor groove platform | ||
| IL_7ZW0_073 | No text annotation | ||
| IL_7ZW0_074 | Major groove platform; stack outside cWW | ||
| IL_7ZW0_075 | No text annotation | ||
| IL_7ZW0_076 | No text annotation | ||
| IL_7ZW0_077 | Tandem non-canonical cWW pairs | ||
| IL_7ZW0_078 | No text annotation | ||
| IL_7ZW0_079 | No text annotation | ||
| IL_7ZW0_080 | No text annotation | ||
| IL_7ZW0_081 | No text annotation | ||
| IL_7ZW0_082 | No text annotation | ||
| IL_7ZW0_083 | AA cWW | ||
| IL_7ZW0_084 | Double sheared | ||
| IL_7ZW0_085 | Single bulged U | ||
| IL_7ZW0_086 | No text annotation | ||
| IL_7ZW0_087 | Double sheared | ||
| IL_7ZW0_088 | No text annotation | ||
| IL_7ZW0_089 | Tandem non-canonical cWW pairs | ||
| IL_7ZW0_090 | Triple sheared | ||
| IL_7ZW0_091 | No text annotation | ||
| IL_7ZW0_092 | No text annotation | ||
| IL_7ZW0_109 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7ZW0_001 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation Not in a motif group | ||
| J3_7ZW0_002 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation Not in a motif group | ||
| J3_7ZW0_004 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation Not in a motif group | ||
| J3_7ZW0_005 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation Not in a motif group | homologous J3_8C3A_037 NA | |
| J3_7ZW0_006 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation Not in a motif group | homologous J3_8C3A_038 NA | |
| J3_7ZW0_007 | 1/2/1168:1171, 1/2/1468:1470, 1/2/1574:1577 | No text annotation Not in a motif group | homologous J3_8C3A_039 NA | |
| J3_7ZW0_013 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation Not in a motif group | ||
| J3_7ZW0_014 | 1/LA/113:123, 1/LA/149:158, 1/LA/263:267 | No text annotation Not in a motif group | ||
| J3_7ZW0_015 | 1/LA/369:376, 1/LA/403:404, 1/LD/19:20 | No text annotation Not in a motif group | ||
| J3_7ZW0_016 | 1/LA/502:503, 1/LA/588:597, 1/LA/606:611 | No text annotation Not in a motif group | ||
| J3_7ZW0_017 | 1/LA/814:820, 1/LA/905:907, 1/LA/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_7ZW0_018 | 1/LA/828:831, 1/LA/863:867, 1/LA/892:897 | No text annotation Not in a motif group | ||
| J3_7ZW0_019 | 1/LA/986:987, 1/LA/1062:1066, 1/LA/1092:1098 | No text annotation Not in a motif group | ||
| J3_7ZW0_020 | 1/LA/1230:1232, 1/LA/1256:1262, 1/LA/1277:1279 | No text annotation Not in a motif group | homologous J3_8C3A_005 NA | |
| J3_7ZW0_021 | 1/LA/1479:1485, 1/LA/1857:1859, 1/LA/1871:1874 | No text annotation Not in a motif group | homologous J3_8C3A_006 NA | |
| J3_7ZW0_022 | 1/LA/1488:1491, 1/LA/1837:1843, 1/LA/1852:1854 | No text annotation Not in a motif group | homologous J3_8C3A_007 NA | |
| J3_7ZW0_023 | 1/LA/1526:1531, 1/LA/1591:1595, 1/LA/1612:1613 | No text annotation Not in a motif group | ||
| J3_7ZW0_024 | 1/LA/1631:1632, 1/LA/1641:1645, 1/LA/1810:1811 | No text annotation Not in a motif group | ||
| J3_7ZW0_025 | 1/LA/2432:2435, 1/LA/2512:2517, 1/LA/2590:2597 | No text annotation Not in a motif group | homologous J3_8C3A_008 NA | |
| J3_7ZW0_026 | 1/LA/2529:2532, 1/LA/2547:2563, 1/LA/2578:2581 | No text annotation Not in a motif group | ||
| J3_7ZW0_027 | 1/LA/2664:2666, 1/LA/2690:2692, 1/LA/2701:2706 | No text annotation Not in a motif group | homologous J3_8C3A_010 NA | |
| J3_7ZW0_028 | 1/LA/2886:2889, 1/LA/2914:2916, 1/LA/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_7ZW0_029 | 1/LA/3298:3300, 1/LA/3314:3318, 1/LA/3388:3390 | No text annotation Not in a motif group | ||
| J3_7ZW0_030 | 1/LC/9:14, 1/LC/66:67, 1/LC/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7ZW0_003 | No text annotation | ||
| J3_7ZW0_008 | No text annotation | ||
| J3_7ZW0_009 | No text annotation | ||
| J3_7ZW0_010 | No text annotation | ||
| J3_7ZW0_011 | No text annotation | ||
| J3_7ZW0_012 | No text annotation |
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