Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7A01_0011/E1/6295:6324No text annotation
Not in a motif group
HL_7A01_0021/E1/6369:6387No text annotation
Not in a motif group
HL_7A01_0031/K3/7:17No text annotation
Not in a motif group
HL_7A01_0041/K3/69:80No text annotation
Not in a motif group
HL_7A01_0051/K3/152:166No text annotation
Not in a motif group
HL_7A01_0061/K3/196:203No text annotation
Not in a motif group
HL_7A01_0071/K3/288:295No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_58912.1
HL_7A01_0081/K3/321:330No text annotation
Not in a motif group
geometric
HL_5J7L_149
HL_59297.1
HL_7A01_0091/K3/377:387No text annotation
Not in a motif group
geometric
HL_3TUP_001
HL_88225.1
HL_7A01_0101/K3/415:422No text annotation
Not in a motif group
geometric
HL_2Y9H_005
HL_56387.1
HL_7A01_0111/K3/441:452No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_22443.1
HL_7A01_0121/K3/462:467UNCG
Not in a motif group
homologous
HL_4V88_196
HL_79299.11
HL_7A01_0131/K3/498:504No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_50374.1
HL_7A01_0141/K3/537:546No text annotation
Not in a motif group
HL_7A01_0151/K3/569:581No text annotation
Not in a motif group
geometric
HL_4V88_199
HL_17086.2
HL_7A01_0161/K3/618:623Other HL
Not in a motif group
homologous
HL_4V88_200
HL_43074.18
HL_7A01_0171/K3/819:829No text annotation
Not in a motif group
HL_7A01_0181/K3/833:841No text annotation
Not in a motif group
HL_7A01_0191/K3/883:903No text annotation
Not in a motif group
HL_7A01_0201/K3/957:966No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_87219.4
HL_7A01_0211/K3/994:999Other HL
Not in a motif group
homologous
HL_4V88_207
HL_43074.18
HL_7A01_0221/K3/1054:1064No text annotation
Not in a motif group
homologous
HL_4V88_208
HL_87219.4
HL_7A01_0231/K3/1111:1122No text annotation
Not in a motif group
HL_7A01_0241/K3/1141:1147No text annotation
Not in a motif group
HL_7A01_0251/K3/1178:1183GNRA
Not in a motif group
homologous
HL_4V88_211
HL_43074.18
HL_7A01_0261/K3/1245:1254No text annotation
Not in a motif group
homologous
HL_4V88_212
HL_96854.1
HL_7A01_0271/K3/1295:1304No text annotation
Not in a motif group
homologous
HL_4V88_213
HL_30819.1
HL_7A01_0281/K3/1352:1359No text annotation
Not in a motif group
geometric
HL_2Y9H_005
HL_56387.1
HL_7A01_0291/K3/1366:1373No text annotation
Not in a motif group
geometric
HL_4LFB_025
HL_54035.7
HL_7A01_0301/K3/1420:1427No text annotation
Not in a motif group
HL_7A01_0311/K3/1460:1466No text annotation
Not in a motif group
geometric
HL_7A0S_031
HL_68304.6
HL_7A01_0321/K3/1565:1570GNRA
Not in a motif group
homologous
HL_4V88_218
HL_43074.18
HL_7A01_0331/K3/1613:1626No text annotation
Not in a motif group
HL_7A01_0341/K3/1658:1666No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_01181.4
HL_7A01_0351/K3/1758:1774No text annotation
Not in a motif group
HL_7A01_0361/K3/1847:1852Other HL
Not in a motif group
homologous
HL_4V88_222
HL_43074.18
HL_7A01_0371/d2/36:41No text annotation
Not in a motif group
geometric
HL_5TBW_185
HL_02733.5
HL_7A01_0381/d2/86:91GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_43074.18
HL_7A01_0391/e2/37:44No text annotation
Not in a motif group
geometric
HL_4V9F_006
HL_23481.5
HL_7A01_0401/e2/68:73No text annotation
Not in a motif group
homologous
HL_5TBW_002
HL_96776.3
HL_7A01_0411/e2/89:95No text annotation
Not in a motif group
homologous
HL_5TBW_003
HL_67216.5
HL_7A01_0421/e2/131:137No text annotation
Not in a motif group
HL_7A01_0431/e2/204:211T-loop with 1 bulged base
Not in a motif group
homologous
HL_5TBW_005
HL_68493.6
HL_7A01_0441/e2/222:226No text annotation
Not in a motif group
homologous
HL_5TBW_006
HL_98557.5
HL_7A01_0451/e2/230:238No text annotation
Not in a motif group
homologous
HL_5TBW_007
HL_08002.6
HL_7A01_0461/e2/289:298No text annotation
Not in a motif group
homologous
HL_5TBW_008
HL_54035.7
HL_7A01_0471/e2/314:323No text annotation
Not in a motif group
homologous
HL_5TBW_009
HL_46142.8
HL_7A01_0481/e2/368:373Other HL
Not in a motif group
homologous
HL_5TBW_010
HL_43074.18
HL_7A01_0491/e2/393:398GNRA
Not in a motif group
homologous
HL_5TBW_011
HL_43074.18
HL_7A01_0541/e2/1178:1183No text annotation
Not in a motif group
HL_7A01_0551/e2/1252:1258No text annotation
Not in a motif group
HL_7A01_0561/e2/1317:1326T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5TBW_014
HL_33239.17
HL_7A01_0571/e2/1363:1374No text annotation
Not in a motif group
HL_7A01_0581/e2/1406:1411No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_69459.1
HL_7A01_0591/e2/1436:1448No text annotation
Not in a motif group
HL_7A01_0601/e2/1480:1484No text annotation
Not in a motif group
geometric
HL_4V9F_041
HL_69353.7
HL_7A01_0611/e2/1561:1566GNRA
Not in a motif group
homologous
HL_5TBW_019
HL_43074.18
HL_7A01_0621/e2/1593:1602No text annotation
Not in a motif group
homologous
HL_5TBW_020
HL_39334.5
HL_7A01_0631/e2/1627:1635No text annotation
Not in a motif group
geometric
HL_5TBW_021
HL_05832.1
HL_7A01_0641/e2/1675:1680No text annotation
Not in a motif group
homologous
HL_5TBW_022
HL_15942.5
HL_7A01_0651/e2/1708:1717No text annotation
Not in a motif group
geometric
HL_2ZNI_001
HL_40469.1
HL_7A01_0661/e2/1760:1772No text annotation
Not in a motif group
HL_7A01_0671/e2/1814:1823No text annotation
Not in a motif group
HL_7A01_0681/e2/1863:1869GNRA
Not in a motif group
homologous
HL_5TBW_025
HL_43074.18
HL_7A01_0691/e2/1885:1892No text annotation
Not in a motif group
homologous
HL_5TBW_026
HL_72451.5
HL_7A01_0701/e2/1976:1988No text annotation
Not in a motif group
HL_7A01_0711/e2/2004:2013No text annotation
Not in a motif group
HL_7A01_0731/e2/2317:2322GNRA
Not in a motif group
homologous
HL_5TBW_030
HL_43074.18
HL_7A01_0741/e2/2376:2384T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5TBW_031
HL_33239.17
HL_7A01_0751/e2/2420:2426No text annotation
Not in a motif group
homologous
HL_5TBW_032
HL_86880.5
HL_7A01_0761/e2/2458:2463Other HL
Not in a motif group
homologous
HL_5TBW_033
HL_43074.18
HL_7A01_0771/e2/2486:2492No text annotation
Not in a motif group
HL_7A01_0781/e2/2523:2532No text annotation
Not in a motif group
homologous
HL_5TBW_035
HL_78457.4
HL_7A01_0791/e2/2561:2566GNRA
Not in a motif group
geometric
HL_1MFQ_002
HL_43074.18
HL_7A01_0801/e2/2577:2584No text annotation
Not in a motif group
HL_7A01_0811/e2/2624:2632No text annotation
Not in a motif group
homologous
HL_5TBW_037
HL_73793.2
HL_7A01_0821/e2/2664:2670No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_40469.1
HL_7A01_0831/e2/2705:2710No text annotation
Not in a motif group
geometric
HL_4V9F_003
HL_94352.4
HL_7A01_0841/e2/2738:2742No text annotation
Not in a motif group
homologous
HL_5TBW_040
HL_69353.7
HL_7A01_0851/e2/2792:2799No text annotation
Not in a motif group
homologous
HL_5TBW_041
HL_66171.3
HL_7A01_0861/e2/2810:2816GNRA with one bulged base
Not in a motif group
homologous
HL_5TBW_042
HL_02361.6
HL_7A01_0871/e2/2872:2877UNCG
Not in a motif group
homologous
HL_5TBW_043
HL_79299.11
HL_7A01_0891/e2/3614:3618No text annotation
Not in a motif group
HL_7A01_0901/e2/3639:3649No text annotation
Not in a motif group
homologous
HL_5TBW_046
HL_43613.4
HL_7A01_0911/e2/3668:3674No text annotation
Not in a motif group
geometric
HL_2ZNI_001
HL_40469.1
HL_7A01_0921/e2/3724:3729Other HL
Not in a motif group
homologous
HL_5TBW_048
HL_43074.18
HL_7A01_0931/e2/3757:3767No text annotation
Not in a motif group
HL_7A01_0941/e2/3794:3806No text annotation
Not in a motif group
HL_7A01_0951/e2/3873:3882No text annotation
Not in a motif group
homologous
HL_5TBW_051
HL_90642.5
HL_7A01_0961/e2/3998:4004No text annotation
Not in a motif group
HL_7A01_0971/e2/4101:4108No text annotation
Not in a motif group
HL_7A01_0981/e2/4139:4145No text annotation
Not in a motif group
HL_7A01_0991/e2/4193:4201No text annotation
Not in a motif group
geometric
HL_361D_002
HL_18218.2
HL_7A01_1001/e2/4210:4222No text annotation
Not in a motif group
homologous
HL_5TBW_055
HL_19870.5
HL_7A01_1011/e2/4250:4258No text annotation
Not in a motif group
homologous
HL_5TBW_056
HL_76406.3
HL_7A01_1021/e2/4270:4277No text annotation
Not in a motif group
homologous
HL_5TBW_057
HL_46142.8
HL_7A01_1031/e2/4301:4309No text annotation
Not in a motif group
homologous
HL_5TBW_058
HL_14725.1
HL_7A01_1041/e2/4321:4326GNRA
Not in a motif group
homologous
HL_5TBW_059
HL_43074.18
HL_7A01_1051/e2/4352:4362No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_18218.2
HL_7A01_1061/e2/4417:4425No text annotation
Not in a motif group
homologous
HL_5TBW_061
HL_36421.5
HL_7A01_1071/e2/4474:4481No text annotation
Not in a motif group
homologous
HL_5TBW_062
HL_92681.5
HL_7A01_1081/e2/4497:4503No text annotation
Not in a motif group
geometric
HL_5TBW_063
HL_26055.6
HL_7A01_1091/e2/4540:4545GNRA
Not in a motif group
homologous
HL_5TBW_064
HL_43074.18
HL_7A01_1101/e2/4603:4608No text annotation
Not in a motif group
geometric
HL_3OXE_002
HL_32527.3
HL_7A01_1111/e2/4646:4651Ribsomal LSU H95
Not in a motif group
homologous
HL_5TBW_066
HL_67719.1
HL_7A01_1121/e2/4688:4702No text annotation
Not in a motif group
homologous
HL_5TBW_067
HL_56677.5
HL_7A01_1141/e2/4907:4914No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_62869.3
HL_7A01_1151/e2/4975:4983No text annotation
Not in a motif group
geometric
HL_5J7L_201
HL_05018.6
HL_7A01_1161/e2/5021:5028No text annotation
Not in a motif group
HL_7A01_1171/h2/47:56No text annotation
Not in a motif group
geometric
HL_4V9F_001
HL_55136.1
HL_7A01_1181/h2/68:90No text annotation
Not in a motif group
HL_7A01_1191/h2/107:112No text annotation
Not in a motif group
HL_7A01_1201/h2/121:129No text annotation
Not in a motif group
geometric
HL_4V9F_003
HL_94352.4

Problematic loops

#loop idProblemSequence
HL_7A01_050No text annotation
HL_7A01_051No text annotation
HL_7A01_052No text annotation
HL_7A01_053No text annotation
HL_7A01_072No text annotation
HL_7A01_088No text annotation
HL_7A01_113No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7A01_0011/K3/23:25,
1/K3/649:651
No text annotation
Not in a motif group
geometric
IL_6IA2_002
IL_01312.13
IL_7A01_0021/K3/34:36,
1/K3/519:521
UC cWW
Not in a motif group
homologous
IL_4V88_385
IL_01312.13
IL_7A01_0031/K3/37:40,
1/K3/514:518
Double sheared
Not in a motif group
geometric
IL_5AOX_003
IL_09705.7
IL_7A01_0041/K3/41:47,
1/K3/479:481
No text annotation
Not in a motif group
homologous
IL_4V88_387
IL_34626.4
IL_7A01_0051/K3/49:52,
1/K3/475:477
No text annotation
Not in a motif group
geometric
IL_4P3T_002
IL_87332.1
IL_7A01_0061/K3/57:62,
1/K3/86:88
No text annotation
Not in a motif group
homologous
IL_4V88_389
IL_96451.1
IL_7A01_0071/K3/63:68,
1/K3/81:85
No text annotation
Not in a motif group
IL_7A01_0081/K3/108:115,
1/K3/349:353
No text annotation
Not in a motif group
IL_7A01_0091/K3/115:116,
1/K3/347:349
Single stack bend
Not in a motif group
geometric
IL_7A0S_054
IL_04038.4
IL_7A01_0101/K3/116:123,
1/K3/341:347
No text annotation
Not in a motif group
IL_7A01_0111/K3/123:125,
1/K3/338:341
No text annotation
Not in a motif group
IL_7A01_0121/K3/145:151,
1/K3/167:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4V88_394
IL_92440.5
IL_7A01_0131/K3/188:192,
1/K3/207:211
No text annotation
Not in a motif group
IL_7A01_0141/K3/239:241,
1/K3/281:282
Single stack bend
Not in a motif group
geometric
IL_5VSU_003
IL_06437.11
IL_7A01_0151/K3/241:246,
1/K3/274:281
No text annotation
Not in a motif group
IL_7A01_0161/K3/247:249,
1/K3/270:273
No text annotation
Not in a motif group
IL_7A01_0171/K3/317:319,
1/K3/332:333
Single stack bend
Not in a motif group
geometric
IL_5TBW_004
IL_04038.4
IL_7A01_0181/K3/359:364,
1/K3/396:403
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4V88_402
IL_29549.9
IL_7A01_0191/K3/365:371,
1/K3/393:395
No text annotation
Not in a motif group
IL_7A01_0201/K3/411:413,
1/K3/424:429
No text annotation
Not in a motif group
homologous
IL_4V88_404
IL_46732.1
IL_7A01_0211/K3/437:439,
1/K3/454:456
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_405
IL_42589.6
IL_7A01_0221/K3/459:461,
1/K3/468:471
No text annotation
Not in a motif group
IL_7A01_0231/K3/487:490,
1/K3/510:512
No text annotation
Not in a motif group
geometric
IL_6E7L_001
IL_01312.13
IL_7A01_0241/K3/491:495,
1/K3/508:509
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_08376.2
IL_7A01_0251/K3/495:496,
1/K3/506:508
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_59137.10
IL_7A01_0261/K3/527:530,
1/K3/554:558
No text annotation
Not in a motif group
IL_7A01_0271/K3/530:534,
1/K3/549:554
No text annotation
Not in a motif group
IL_7A01_0281/K3/534:537,
1/K3/546:549
No text annotation
Not in a motif group
IL_7A01_0291/K3/566:569,
1/K3/581:584
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5C5W_003
IL_85877.10
IL_7A01_0301/K3/599:606,
1/K3/636:637
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4V88_413
IL_15861.6
IL_7A01_0311/K3/606:608,
1/K3/635:636
No text annotation
Not in a motif group
IL_7A01_0321/K3/611:617,
1/K3/624:632
No text annotation
Not in a motif group
IL_7A01_0331/K3/663:665,
1/K3/1162:1164
No text annotation
Not in a motif group
geometric
IL_3ICQ_003
IL_01312.13
IL_7A01_0341/K3/673:675,
1/K3/1030:1032
No text annotation
Not in a motif group
homologous
IL_4V88_417
IL_01312.13
IL_7A01_0351/K3/676:681,
1/K3/1024:1029
No text annotation
Not in a motif group
IL_7A01_0361/K3/692:694,
1/K3/738:739
No text annotation
Not in a motif group
IL_7A01_0371/K3/698:699,
1/K3/731:734
Multiple bulged bases
Not in a motif group
geometric
IL_3IGI_013
IL_13730.12
IL_7A01_0381/K3/752:754,
1/K3/790:791
No text annotation
Not in a motif group
IL_7A01_0391/K3/802:803,
1/K3/860:863
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4V88_423
IL_09061.4
IL_7A01_0401/K3/805:807,
1/K3/856:858
No text annotation
Not in a motif group
geometric
IL_2O3V_001
IL_01312.13
IL_7A01_0411/K3/873:874,
1/K3/912:914
No text annotation
Not in a motif group
IL_7A01_0421/K3/874:879,
1/K3/907:912
No text annotation
Not in a motif group
IL_7A01_0431/K3/922:923,
1/K3/1019:1022
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4V88_428
IL_70995.6
IL_7A01_0441/K3/924:926,
1/K3/1015:1018
No text annotation
Not in a motif group
geometric
IL_1NBS_006
IL_01312.13
IL_7A01_0451/K3/928:935,
1/K3/1007:1013
No text annotation
Not in a motif group
IL_7A01_0461/K3/942:945,
1/K3/981:984
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_432
IL_85877.10
IL_7A01_0471/K3/952:956,
1/K3/967:974
Kink-turn
Not in a motif group
geometric
IL_5J7L_035
IL_90922.1
IL_7A01_0481/K3/1042:1047,
1/K3/1071:1073
Other IL
Not in a motif group
homologous
IL_4V88_435
IL_51590.1
IL_7A01_0491/K3/1047:1051,
1/K3/1067:1071
tSH-tHW-tHS
Not in a motif group
geometric
IL_4V88_436
IL_39521.5
IL_7A01_0501/K3/1091:1093,
1/K3/1152:1158
No text annotation
Not in a motif group
homologous
IL_4V88_437
IL_19557.1
IL_7A01_0511/K3/1098:1103,
1/K3/1129:1134
No text annotation
Not in a motif group
IL_7A01_0521/K3/1108:1110,
1/K3/1123:1124
Minor groove platform
Not in a motif group
geometric
IL_5J7L_004
IL_06437.11
IL_7A01_0531/K3/1168:1175,
1/K3/1186:1191
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4V88_440
IL_24606.1
IL_7A01_0541/K3/1203:1205,
1/K3/1693:1696
No text annotation
Not in a motif group
geometric
IL_6IA2_005
IL_01312.13
IL_7A01_0551/K3/1205:1208,
1/K3/1691:1693
No text annotation
Not in a motif group
geometric
IL_4V9K_064
IL_01312.13
IL_7A01_0561/K3/1214:1217,
1/K3/1681:1685
C-loop
Not in a motif group
homologous
IL_4V88_443
IL_63596.4
IL_7A01_0571/K3/1230:1232,
1/K3/1526:1528
No text annotation
Not in a motif group
homologous
IL_4V88_444
IL_01312.13
IL_7A01_0581/K3/1235:1236,
1/K3/1521:1523
Minor groove platform
Not in a motif group
homologous
IL_4V88_445
IL_06437.11
IL_7A01_0591/K3/1270:1272,
1/K3/1510:1512
No text annotation
Not in a motif group
homologous
IL_4V88_446
IL_01312.13
IL_7A01_0601/K3/1325:1327,
1/K3/1502:1503
Single bulged U
Not in a motif group
homologous
IL_4V88_449
IL_83039.11
IL_7A01_0611/K3/1328:1333,
1/K3/1498:1501
Double sheared
Not in a motif group
geometric
IL_4V88_471
IL_09705.7
IL_7A01_0621/K3/1333:1336,
1/K3/1491:1498
No text annotation
Not in a motif group
IL_7A01_0631/K3/1337:1338,
1/K3/1488:1490
Single bulged A
Not in a motif group
homologous
IL_4V88_452
IL_80007.16
IL_7A01_0641/K3/1347:1349,
1/K3/1380:1382
Isolated cWH basepair
Not in a motif group
homologous
IL_4V88_453
IL_42589.6
IL_7A01_0651/K3/1363:1365,
1/K3/1374:1375
Minor groove platform
Not in a motif group
geometric
IL_5J7L_004
IL_06437.11
IL_7A01_0661/K3/1400:1402,
1/K3/1445:1446
No text annotation
Not in a motif group
IL_7A01_0671/K3/1402:1405,
1/K3/1441:1445
No text annotation
Not in a motif group
IL_7A01_0681/K3/1407:1411,
1/K3/1434:1439
No text annotation
Not in a motif group
IL_7A01_0691/K3/1411:1413,
1/K3/1433:1434
No text annotation
Not in a motif group
IL_7A01_0701/K3/1414:1416,
1/K3/1429:1432
UU cWW
Not in a motif group
geometric
IL_1ZZ5_002
IL_01312.13
IL_7A01_0711/K3/1417:1420,
1/K3/1427:1428
No text annotation
Not in a motif group
IL_7A01_0721/K3/1453:1456,
1/K3/1470:1475
No text annotation
Not in a motif group
IL_7A01_0731/K3/1537:1539,
1/K3/1594:1596
No text annotation
Not in a motif group
geometric
IL_5J7L_050
IL_01312.13
IL_7A01_0741/K3/1559:1562,
1/K3/1573:1576
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4V88_461
IL_85877.10
IL_7A01_0751/K3/1604:1610,
1/K3/1629:1635
No text annotation
Not in a motif group
IL_7A01_0761/K3/1706:1708,
1/K3/1826:1828
No text annotation
Not in a motif group
geometric
IL_7A0S_020
IL_01312.13
IL_7A01_0771/K3/1708:1711,
1/K3/1822:1826
No text annotation
Not in a motif group
IL_7A01_0781/K3/1714:1716,
1/K3/1817:1819
AA cWW
Not in a motif group
homologous
IL_4V88_467
IL_01312.13
IL_7A01_0791/K3/1717:1720,
1/K3/1813:1816
Double sheared
Not in a motif group
geometric
IL_4V88_468
IL_09705.7
IL_7A01_0801/K3/1720:1722,
1/K3/1812:1813
Single bulged U
Not in a motif group
homologous
IL_4V88_469
IL_21340.1
IL_7A01_0811/K3/1729:1731,
1/K3/1803:1805
No text annotation
Not in a motif group
homologous
IL_4V88_470
IL_01312.13
IL_7A01_0821/K3/1733:1736,
1/K3/1798:1801
Double sheared
Not in a motif group
geometric
IL_3D0U_002
IL_09705.7
IL_7A01_0831/K3/1739:1742,
1/K3/1792:1795
No text annotation
Not in a motif group
IL_7A01_0841/K3/1742:1746,
1/K3/1788:1792
Triple sheared
Not in a motif group
homologous
IL_4V88_474
IL_56467.6
IL_7A01_0851/K3/1749:1752,
1/K3/1780:1785
No text annotation
Not in a motif group
IL_7A01_0861/K3/1756:1758,
1/K3/1774:1776
Isolated near basepair
Not in a motif group
geometric
IL_4V88_406
IL_01312.13
IL_7A01_0871/d2/15:16,
1/d2/62:64
Single bulged A
Not in a motif group
homologous
IL_5TBW_372
IL_80007.16
IL_7A01_0881/d2/21:27,
1/d2/52:57
No text annotation
Not in a motif group
IL_7A01_0891/d2/28:29,
1/d2/48:51
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_7RQB_113
IL_09061.4
IL_7A01_0901/d2/32:36,
1/d2/41:45
Symmetric double minor groove platform
Not in a motif group
homologous
IL_7RQB_114
IL_58103.5
IL_7A01_0911/d2/71:78,
1/d2/98:104
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_377
IL_04346.5
IL_7A01_0921/d2/79:81,
1/d2/95:97
UU cWW
Not in a motif group
geometric
IL_1UN6_005
IL_01312.13
IL_7A01_0931/d2/82:85,
1/d2/92:94
No text annotation
Not in a motif group
homologous
IL_5TBW_378
IL_01312.13
IL_7A01_0941/e2/6:7,
1/h2/149:151
Single bulged C
Not in a motif group
homologous
IL_5TBW_002
IL_61258.10
IL_7A01_0951/e2/12:14,
1/h2/143:144
Single bulged U
Not in a motif group
homologous
IL_5TBW_003
IL_83039.11
IL_7A01_0961/e2/16:18,
1/h2/139:141
No text annotation
Not in a motif group
geometric
IL_5C5W_002
IL_87880.2
IL_7A01_0971/e2/26:27,
1/e2/55:57
Single stack bend
Not in a motif group
homologous
IL_5TBW_004
IL_04038.4
IL_7A01_0981/e2/30:37,
1/e2/44:52
9x8 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4WF9_008
IL_61812.1
IL_7A01_0991/e2/81:88,
1/e2/96:102
No text annotation
Not in a motif group
homologous
IL_5TBW_006
IL_29509.1
IL_7A01_1001/e2/118:121,
1/e2/152:153
Multiple bulged bases
Not in a motif group
geometric
IL_4V88_392
IL_13730.12
IL_7A01_1011/e2/121:123,
1/e2/146:152
No text annotation
Not in a motif group
IL_7A01_1021/e2/125:126,
1/e2/142:144
Single bulged C
Not in a motif group
geometric
IL_1S03_006
IL_61258.10
IL_7A01_1031/e2/168:174,
1/e2/262:267
No text annotation
Not in a motif group
IL_7A01_1041/e2/180:182,
1/e2/255:256
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_04038.4
IL_7A01_1051/e2/182:189,
1/e2/252:255
No text annotation
Not in a motif group
IL_7A01_1061/e2/195:196,
1/e2/244:246
Single bulged C
Not in a motif group
geometric
IL_1DQF_001
IL_61258.10
IL_7A01_1071/e2/199:201,
1/e2/214:215
Single bulged U
Not in a motif group
homologous
IL_5TBW_012
IL_83039.11
IL_7A01_1081/e2/339:342,
1/h2/32:33
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
geometric
IL_1U9S_005
IL_09061.4
IL_7A01_1091/e2/348:350,
1/h2/25:26
Single bulged A
Not in a motif group
homologous
IL_5TBW_013
IL_80007.16
IL_7A01_1101/e2/387:390,
1/e2/401:414
No text annotation
Not in a motif group
homologous
IL_5TBW_014
IL_60992.5
IL_7A01_1111/e2/415:421,
1/h2/13:19
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_5TBW_015
IL_66414.5
IL_7A01_1121/e2/439:440,
1/e2/1307:1309
Single stack bend
Not in a motif group
geometric
IL_7A0S_054
IL_04038.4
IL_7A01_1131/e2/442:446,
1/e2/1300:1305
No text annotation
Not in a motif group
IL_7A01_1141/e2/459:460,
1/e2/695:697
No text annotation
Not in a motif group
IL_7A01_1151/e2/462:464,
1/e2/691:693
No text annotation
Not in a motif group
geometric
IL_3DIL_006
IL_01312.13
IL_7A01_1161/e2/466:473,
1/e2/681:689
No text annotation
Not in a motif group
IL_7A01_1171/e2/482:486,
1/e2/670:672
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_3TD0_002
IL_01312.13
IL_7A01_1181/e2/488:490,
1/e2/663:668
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_04038.4
IL_7A01_1191/e2/491:494,
1/e2/660:662
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_1U6B_001
IL_01312.13
IL_7A01_1201/e2/497:499,
1/e2/656:657
No text annotation
Not in a motif group
IL_7A01_1211/e2/500:504,
1/e2/654:655
No text annotation
Not in a motif group
IL_7A01_1221/e2/508:510,
1/e2/649:650
Single bulged A
Not in a motif group
geometric
IL_6WPI_001
IL_80007.16
IL_7A01_1231/e2/511:515,
1/e2/646:648
No text annotation
Not in a motif group
IL_7A01_1241/e2/520:521,
1/e2/638:641
No text annotation
Not in a motif group
IL_7A01_1251/e2/708:709,
1/e2/1287:1289
Single bulged G
Not in a motif group
geometric
IL_4LFB_036
IL_59137.10
IL_7A01_1261/e2/722:724,
1/e2/942:946
No text annotation
Not in a motif group
IL_7A01_1271/e2/726:731,
1/e2/938:940
No text annotation
Not in a motif group
IL_7A01_1281/e2/731:735,
1/e2/928:938
No text annotation
Not in a motif group
IL_7A01_1291/e2/735:737,
1/e2/927:928
No text annotation
Not in a motif group
IL_7A01_1301/e2/740:742,
1/e2/922:924
UC cWW
Not in a motif group
geometric
IL_4V88_385
IL_01312.13
IL_7A01_1311/e2/743:745,
1/e2/920:921
Not an internal loop
Not in a motif group
geometric
IL_4UYK_002
IL_31836.1
IL_7A01_1321/e2/745:749,
1/e2/914:920
No text annotation
Not in a motif group
IL_7A01_1331/e2/749:753,
1/e2/910:914
No text annotation
Not in a motif group
IL_7A01_1341/e2/1073:1074,
1/e2/1236:1239
No text annotation
Not in a motif group
IL_7A01_1351/e2/1074:1076,
1/e2/1234:1236
No text annotation
Not in a motif group
geometric
IL_5UNE_007
IL_01312.13
IL_7A01_1361/e2/1077:1079,
1/e2/1221:1233
No text annotation
Not in a motif group
IL_7A01_1371/e2/1081:1082,
1/e2/1217:1219
Single stack bend
Not in a motif group
geometric
IL_6FZ0_001
IL_04038.4
IL_7A01_1381/e2/1082:1084,
1/e2/1213:1217
No text annotation
Not in a motif group
IL_7A01_1391/e2/1086:1087,
1/e2/1209:1211
Single bulged C
Not in a motif group
geometric
IL_3SN2_001
IL_61258.10
IL_7A01_1401/e2/1097:1098,
1/e2/1197:1199
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_04038.4
IL_7A01_1411/e2/1173:1175,
1/e2/1186:1188
No text annotation
Not in a motif group
geometric
IL_5TBW_068
IL_01312.13
IL_7A01_1421/e2/1357:1360,
1/e2/1378:1382
No text annotation
Not in a motif group
IL_7A01_1431/e2/1360:1361,
1/e2/1376:1378
No text annotation
Not in a motif group
IL_7A01_1441/e2/1425:1429,
1/e2/1455:1460
Triple sheared related
Not in a motif group
geometric
IL_4V9F_018
IL_64879.1
IL_7A01_1451/e2/1431:1434,
1/e2/1450:1453
Double sheared
Not in a motif group
geometric
IL_4KZD_002
IL_09705.7
IL_7A01_1461/e2/1467:1468,
1/e2/1496:1498
Single bulged A
Not in a motif group
homologous
IL_5TBW_024
IL_80007.16
IL_7A01_1471/e2/1474:1476,
1/e2/1489:1490
Single stack bend
Not in a motif group
geometric
IL_7A0S_005
IL_04038.4
IL_7A01_1481/e2/1479:1480,
1/e2/1484:1486
No text annotation
Not in a motif group
IL_7A01_1491/e2/1520:1522,
1/e2/1655:1657
No text annotation
Not in a motif group
homologous
IL_5TBW_027
IL_01312.13
IL_7A01_1501/e2/1522:1526,
1/e2/1648:1655
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_4WF9_021
IL_17470.5
IL_7A01_1511/e2/1549:1551,
1/e2/1576:1579
Isolated cWH basepair
Not in a motif group
geometric
IL_3SJ2_001
IL_42589.6
IL_7A01_1521/e2/1551:1556,
1/e2/1571:1576
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_7A0S_018
IL_74353.1
IL_7A01_1531/e2/1586:1589,
1/e2/1605:1607
Major groove platform with extra cWW
Not in a motif group
homologous
IL_5TBW_031
IL_95485.6
IL_7A01_1541/e2/1590:1592,
1/e2/1603:1604
Single bulged U
Not in a motif group
homologous
IL_5TBW_032
IL_83039.11
IL_7A01_1551/e2/1624:1627,
1/e2/1635:1640
No text annotation
Not in a motif group
IL_7A01_1561/e2/1671:1673,
1/e2/1682:1684
No text annotation
Not in a motif group
homologous
IL_5TBW_034
IL_01312.13
IL_7A01_1571/e2/1686:1688,
1/e2/1847:1850
No text annotation
Not in a motif group
IL_7A01_1581/e2/1723:1725,
1/e2/1837:1839
Single stack bend
Not in a motif group
geometric
IL_7A0S_054
IL_04038.4
IL_7A01_1591/e2/1732:1737,
1/e2/1792:1797
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7A0S_027
IL_89193.1
IL_7A01_1601/e2/1737:1738,
1/e2/1790:1792
Minor groove platform
Not in a motif group
geometric
IL_6DLR_003
IL_06437.11
IL_7A01_1611/e2/1739:1744,
1/e2/1786:1789
C-loop
Not in a motif group
homologous
IL_5TBW_040
IL_63596.4
IL_7A01_1621/e2/1745:1749,
1/e2/1781:1785
No text annotation
Not in a motif group
IL_7A01_1631/e2/1749:1751,
1/e2/1779:1781
No text annotation
Not in a motif group
homologous
IL_5TBW_042
IL_01312.13
IL_7A01_1641/e2/1753:1756,
1/e2/1775:1777
No text annotation
Not in a motif group
geometric
IL_4V84_070
IL_34626.4
IL_7A01_1651/e2/1756:1760,
1/e2/1772:1775
No text annotation
Not in a motif group
IL_7A01_1661/e2/1857:1859,
1/e2/1873:1875
No text annotation
Not in a motif group
homologous
IL_5TBW_046
IL_01312.13
IL_7A01_1671/e2/1860:1862,
1/e2/1870:1872
Isolated cWS basepair
Not in a motif group
homologous
IL_5TBW_047
IL_67621.5
IL_7A01_1681/e2/1881:1883,
1/e2/1894:1896
No text annotation
Not in a motif group
IL_7A01_1691/e2/1904:1908,
1/e2/2066:2070
UAA/GAN
Not in a motif group
homologous
IL_5TBW_048
IL_53523.5
IL_7A01_1701/e2/1910:1917,
1/e2/2063:2064
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5TBW_049
IL_15861.6
IL_7A01_1711/e2/1917:1919,
1/e2/2062:2063
No text annotation
Not in a motif group
IL_7A01_1721/e2/1919:1921,
1/e2/2061:2062
No text annotation
Not in a motif group
IL_7A01_1731/e2/1925:1932,
1/e2/2052:2057
No text annotation
Not in a motif group
geometric
IL_5TBW_051
IL_17971.1
IL_7A01_1741/e2/1932:1943,
1/e2/2037:2052
No text annotation
Not in a motif group
homologous
IL_5TBW_052
IL_94878.1
IL_7A01_1751/e2/1945:1947,
1/e2/2034:2035
Single bulged U
Not in a motif group
homologous
IL_5TBW_053
IL_83039.11
IL_7A01_1761/e2/1956:1964,
1/e2/2021:2025
Kink-turn
Not in a motif group
homologous
IL_5TBW_054
IL_90538.3
IL_7A01_1771/e2/1965:1967,
1/e2/2017:2020
No text annotation
Not in a motif group
IL_7A01_1781/e2/1972:1976,
1/e2/1988:1992
No text annotation
Not in a motif group
IL_7A01_1791/e2/2000:2004,
1/e2/2013:2015
No text annotation
Not in a motif group
IL_7A01_1801/e2/2082:2084,
1/e2/2272:2273
No text annotation
Not in a motif group
IL_7A01_1811/e2/2290:2292,
1/e2/2342:2345
Isolated cWS basepair
Not in a motif group
homologous
IL_5TBW_057
IL_01312.13
IL_7A01_1821/e2/2299:2301,
1/e2/2334:2335
Single bulged A
Not in a motif group
homologous
IL_5TBW_058
IL_80007.16
IL_7A01_1831/e2/2302:2310,
1/e2/2328:2333
No text annotation
Not in a motif group
IL_7A01_1841/e2/2312:2314,
1/e2/2325:2326
Single bulged A
Not in a motif group
homologous
IL_5TBW_060
IL_80007.16
IL_7A01_1851/e2/2358:2364,
1/e2/3858:3863
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_061
IL_35110.5
IL_7A01_1861/e2/2415:2419,
1/e2/2427:2429
C-loop
Not in a motif group
geometric
IL_7A0S_047
IL_63596.4
IL_7A01_1871/e2/2445:2450,
1/e2/2509:2515
UAA/GAN with extra cWW
Not in a motif group
geometric
IL_4WF9_104
IL_49767.4
IL_7A01_1881/e2/2477:2479,
1/e2/2499:2500
Minor groove platform
Not in a motif group
geometric
IL_6DLR_003
IL_06437.11
IL_7A01_1891/e2/2542:2547,
1/e2/2772:2774
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_1U6B_001
IL_01312.13
IL_7A01_1901/e2/2589:2593,
1/e2/2752:2756
Triple sheared
Not in a motif group
homologous
IL_5TBW_067
IL_56467.6
IL_7A01_1911/e2/2613:2614,
1/e2/2724:2726
Single bulged C
Not in a motif group
homologous
IL_5TBW_069
IL_61258.10
IL_7A01_1921/e2/2614:2615,
1/e2/2722:2724
Single stack bend
Not in a motif group
geometric
IL_4C7O_002
IL_72766.2
IL_7A01_1931/e2/2646:2648,
1/e2/2685:2688
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_4V9F_076
IL_38958.6
IL_7A01_1941/e2/2651:2653,
1/e2/2681:2682
Single bulged G
Not in a motif group
geometric
IL_4V88_442
IL_59137.10
IL_7A01_1951/e2/2656:2662,
1/e2/2672:2678
Kink-turn
Not in a motif group
homologous
IL_5TBW_073
IL_76900.1
IL_7A01_1961/e2/2704:2705,
1/e2/2710:2712
Single bulged G
Not in a motif group
geometric
IL_5TBW_029
IL_99645.1
IL_7A01_1971/e2/2832:2838,
1/e2/3850:3853
No text annotation
Not in a motif group
homologous
IL_5TBW_074
IL_79393.8
IL_7A01_1981/e2/2843:2846,
1/e2/3842:3845
No text annotation
Not in a motif group
IL_7A01_1991/e2/2847:2850,
1/e2/3840:3841
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_80663.10
IL_7A01_2001/e2/2850:2855,
1/e2/3837:3840
Intercalated tWH
Not in a motif group
homologous
IL_5TBW_077
IL_98882.3
IL_7A01_2011/e2/2867:2872,
1/e2/2877:2883
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_4V9F_063
IL_66584.5
IL_7A01_2021/e2/2889:2891,
1/e2/3610:3612
No text annotation
Not in a motif group
homologous
IL_5TBW_079
IL_01312.13
IL_7A01_2031/e2/2896:2897,
1/e2/3602:3605
No text annotation
Not in a motif group
homologous
IL_5TBW_080
IL_76195.1
IL_7A01_2041/e2/3632:3633,
1/e2/3827:3829
Single bulged A
Not in a motif group
homologous
IL_5TBW_082
IL_80007.16
IL_7A01_2051/e2/3660:3665,
1/e2/3677:3684
Kink-turn related
Not in a motif group
homologous
IL_5TBW_083
IL_95993.1
IL_7A01_2061/e2/3700:3703,
1/e2/3749:3750
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5TBW_084
IL_72766.2
IL_7A01_2071/e2/3704:3706,
1/e2/3744:3748
Single bulged G, near cWW
Not in a motif group
geometric
IL_6CZR_128
IL_01312.13
IL_7A01_2081/e2/3708:3710,
1/e2/3741:3742
Single stack bend
Not in a motif group
geometric
IL_7A0S_054
IL_04038.4
IL_7A01_2091/e2/3710:3714,
1/e2/3739:3741
No text annotation
Not in a motif group
IL_7A01_2101/e2/3715:3721,
1/e2/3732:3738
No text annotation
Not in a motif group
homologous
IL_5TBW_088
IL_36973.5
IL_7A01_2111/e2/3780:3781,
1/e2/3811:3814
Multiple bulged bases
Not in a motif group
homologous
IL_5TBW_089
IL_69632.1
IL_7A01_2121/e2/3781:3792,
1/e2/3808:3811
No text annotation
Not in a motif group
geometric
IL_5TBW_090
IL_45481.1
IL_7A01_2131/e2/3895:3898,
1/e2/4563:4565
Major groove platform with extra pair
Not in a motif group
homologous
IL_5TBW_091
IL_87630.5
IL_7A01_2141/e2/3900:3902,
1/e2/4558:4561
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5TBW_092
IL_86964.1
IL_7A01_2151/e2/3913:3915,
1/e2/4388:4389
Single bulged U
Not in a motif group
homologous
IL_5TBW_093
IL_83039.11
IL_7A01_2161/e2/3916:3917,
1/e2/4384:4387
Minor groove platform
Not in a motif group
homologous
IL_5TBW_094
IL_06437.11
IL_7A01_2171/e2/3927:3929,
1/e2/4181:4184
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5TBW_095
IL_38958.6
IL_7A01_2181/e2/3974:3980,
1/e2/4025:4037
No text annotation
Not in a motif group
IL_7A01_2191/e2/3983:3985,
1/e2/4018:4022
No text annotation
Not in a motif group
IL_7A01_2201/e2/3986:3988,
1/e2/4014:4017
No text annotation
Not in a motif group
IL_7A01_2211/e2/3988:3989,
1/e2/4012:4014
No text annotation
Not in a motif group
IL_7A01_2221/e2/3991:3994,
1/e2/4009:4010
No text annotation
Not in a motif group
IL_7A01_2231/e2/3994:3996,
1/e2/4006:4009
No text annotation
Not in a motif group
IL_7A01_2241/e2/4082:4088,
1/e2/4161:4164
No text annotation
Not in a motif group
IL_7A01_2251/e2/4191:4192,
1/e2/4202:4204
Single bulged A
Not in a motif group
homologous
IL_5TBW_098
IL_80007.16
IL_7A01_2261/e2/4243:4245,
1/e2/4263:4267
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_5TBW_099
IL_38958.6
IL_7A01_2271/e2/4291:4293,
1/e2/4317:4318
Single bulged A
Not in a motif group
geometric
IL_4V88_399
IL_80007.16
IL_7A01_2281/e2/4295:4297,
1/e2/4314:4315
Single stack bend
Not in a motif group
geometric
IL_4V9F_005
IL_04038.4
IL_7A01_2291/e2/4297:4298,
1/e2/4312:4314
Single stack bend
Not in a motif group
geometric
IL_7A0S_005
IL_04038.4
IL_7A01_2301/e2/4347:4350,
1/e2/4364:4365
Single stack bend
Not in a motif group
geometric
IL_4V9F_081
IL_04038.4