7A01 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7A01_001 | 1/E1/6295:6324 | No text annotation | ||
| HL_7A01_132 | 1/E1/6370:6386 | No text annotation | ||
| HL_7A01_003 | 1/K3/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_7A01_121 | 1/K3/63:85 | No text annotation | ||
| HL_7A01_004 | 1/K3/69:80 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_7A01_005 | 1/K3/152:166 | No text annotation | ||
| HL_7A01_006 | 1/K3/196:203 | No text annotation | ||
| HL_7A01_007 | 1/K3/288:295 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_7A01_008 | 1/K3/321:330 | No text annotation | geometric HL_5J7L_149 HL_09452.1 | |
| HL_7A01_009 | 1/K3/377:387 | tRNA D-loop | geometric HL_3TUP_001 HL_45175.1 | |
| HL_7A01_122 | 1/K3/416:421 | GNRA variation | homologous HL_8C3A_200 NA | |
| HL_7A01_011 | 1/K3/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_7A01_012 | 1/K3/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_7A01_013 | 1/K3/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_7A01_014 | 1/K3/537:546 | No text annotation | ||
| HL_7A01_015 | 1/K3/569:581 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7A01_016 | 1/K3/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_7A01_017 | 1/K3/819:829 | No text annotation | ||
| HL_7A01_018 | 1/K3/833:841 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7A01_123 | 1/K3/880:906 | No text annotation | ||
| HL_7A01_019 | 1/K3/883:903 | No text annotation | ||
| HL_7A01_020 | 1/K3/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_7A01_021 | 1/K3/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_7A01_022 | 1/K3/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_7A01_133 | 1/K3/1113:1120 | No text annotation | ||
| HL_7A01_125 | 1/K3/1142:1146 | No text annotation | ||
| HL_7A01_025 | 1/K3/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_7A01_026 | 1/K3/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_7A01_027 | 1/K3/1295:1304 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_7A01_134 | 1/K3/1353:1358 | GNRA | homologous HL_8P9A_217 HL_37824.7 | |
| HL_7A01_029 | 1/K3/1366:1373 | T-loop related | geometric HL_4LFB_025 HL_77436.5 | |
| HL_7A01_126 | 1/K3/1417:1428 | No text annotation | ||
| HL_7A01_030 | 1/K3/1420:1427 | No text annotation | ||
| HL_7A01_031 | 1/K3/1460:1466 | GNRA | geometric HL_7A0S_031 HL_37824.7 | |
| HL_7A01_032 | 1/K3/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_7A01_033 | 1/K3/1613:1626 | No text annotation | ||
| HL_7A01_034 | 1/K3/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_7A01_035 | 1/K3/1758:1774 | No text annotation | ||
| HL_7A01_036 | 1/K3/1847:1852 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_7A01_127 | 1/d2/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_7A01_037 | 1/d2/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_7A01_038 | 1/d2/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7A01_039 | 1/e2/37:44 | No text annotation | geometric HL_4V9F_006 HL_30068.2 | |
| HL_7A01_040 | 1/e2/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7A01_041 | 1/e2/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7A01_042 | 1/e2/131:137 | No text annotation | geometric HL_8C3A_006 NA | |
| HL_7A01_043 | 1/e2/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7A01_044 | 1/e2/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_7A01_045 | 1/e2/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_7A01_046 | 1/e2/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_7A01_047 | 1/e2/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7A01_048 | 1/e2/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7A01_049 | 1/e2/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7A01_050 | 1/e2/524:635 | No text annotation | ||
| HL_7A01_135 | 1/e2/757:906 | No text annotation | ||
| HL_7A01_128 | 1/e2/989:1064 | No text annotation | ||
| HL_7A01_053 | 1/e2/1112:1161 | No text annotation | ||
| HL_7A01_054 | 1/e2/1178:1183 | No text annotation | ||
| HL_7A01_055 | 1/e2/1252:1258 | No text annotation | ||
| HL_7A01_056 | 1/e2/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7A01_136 | 1/e2/1364:1373 | No text annotation | ||
| HL_7A01_058 | 1/e2/1406:1411 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7A01_059 | 1/e2/1436:1448 | No text annotation | ||
| HL_7A01_060 | 1/e2/1480:1484 | Mini UNCG | geometric HL_4V9F_041 HL_48778.2 | |
| HL_7A01_061 | 1/e2/1561:1566 | GNRA | homologous HL_5TBW_019 NA | |
| HL_7A01_062 | 1/e2/1593:1602 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_7A01_063 | 1/e2/1627:1635 | No text annotation | geometric HL_5TBW_021 NA | |
| HL_7A01_064 | 1/e2/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7A01_065 | 1/e2/1708:1717 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_7A01_066 | 1/e2/1760:1772 | No text annotation | ||
| HL_7A01_067 | 1/e2/1814:1823 | No text annotation | ||
| HL_7A01_068 | 1/e2/1863:1869 | GNRA | homologous HL_8C3A_025 NA | |
| HL_7A01_069 | 1/e2/1885:1892 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_7A01_070 | 1/e2/1976:1988 | No text annotation | ||
| HL_7A01_129 | 1/e2/2000:2015 | No text annotation | ||
| HL_7A01_071 | 1/e2/2004:2013 | No text annotation | ||
| HL_7A01_072 | 1/e2/2086:2270 | No text annotation | ||
| HL_7A01_073 | 1/e2/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7A01_074 | 1/e2/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_7A01_075 | 1/e2/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7A01_076 | 1/e2/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7A01_130 | 1/e2/2487:2491 | No text annotation | ||
| HL_7A01_078 | 1/e2/2523:2532 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_7A01_079 | 1/e2/2561:2566 | GNRA | geometric HL_1MFQ_002 HL_37824.7 | |
| HL_7A01_080 | 1/e2/2577:2584 | No text annotation | geometric HL_8KAH_003 NA | |
| HL_7A01_081 | 1/e2/2624:2632 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_7A01_082 | 1/e2/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_7A01_131 | 1/e2/2704:2712 | No text annotation | ||
| HL_7A01_083 | 1/e2/2705:2710 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_7A01_084 | 1/e2/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7A01_085 | 1/e2/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_7A01_086 | 1/e2/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_7A01_087 | 1/e2/2872:2877 | UNCG | homologous HL_5TBW_043 NA | |
| HL_7A01_088 | 1/e2/2900:3599 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7A01_089 | 1/e2/3614:3618 | No text annotation | ||
| HL_7A01_090 | 1/e2/3639:3649 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7A01_091 | 1/e2/3668:3674 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_7A01_092 | 1/e2/3724:3729 | GNRA | homologous HL_8C3A_048 NA | |
| HL_7A01_093 | 1/e2/3757:3767 | No text annotation | ||
| HL_7A01_137 | 1/e2/3795:3805 | No text annotation | ||
| HL_7A01_095 | 1/e2/3873:3882 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7A01_096 | 1/e2/3998:4004 | No text annotation | ||
| HL_7A01_097 | 1/e2/4101:4108 | No text annotation | ||
| HL_7A01_098 | 1/e2/4139:4145 | No text annotation | ||
| HL_7A01_099 | 1/e2/4193:4201 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_7A01_100 | 1/e2/4210:4222 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_7A01_101 | 1/e2/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7A01_102 | 1/e2/4270:4277 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7A01_103 | 1/e2/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7A01_104 | 1/e2/4321:4326 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7A01_105 | 1/e2/4352:4362 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_7A01_106 | 1/e2/4417:4425 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_7A01_107 | 1/e2/4474:4481 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_7A01_108 | 1/e2/4497:4503 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_7A01_109 | 1/e2/4540:4545 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7A01_110 | 1/e2/4603:4608 | GNRA related | geometric HL_3OXE_002 HL_04783.2 | |
| HL_7A01_111 | 1/e2/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7A01_112 | 1/e2/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7A01_113 | 1/e2/4777:4860 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
| HL_7A01_114 | 1/e2/4907:4914 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_7A01_115 | 1/e2/4975:4983 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_7A01_116 | 1/e2/5021:5028 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7A01_117 | 1/h2/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_93438.2 | |
| HL_7A01_118 | 1/h2/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_7A01_119 | 1/h2/107:112 | No text annotation | homologous HL_8P9A_188 HL_53890.2 | |
| HL_7A01_120 | 1/h2/121:129 | No text annotation | geometric HL_4V9F_003 HL_75660.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7A01_002 | No text annotation | ||
| HL_7A01_010 | No text annotation | ||
| HL_7A01_023 | No text annotation | ||
| HL_7A01_124 | No text annotation | ||
| HL_7A01_024 | No text annotation | ||
| HL_7A01_028 | No text annotation | ||
| HL_7A01_051 | No text annotation | ||
| HL_7A01_052 | No text annotation | ||
| HL_7A01_057 | No text annotation | ||
| HL_7A01_077 | No text annotation | ||
| HL_7A01_094 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7A01_268 | 1/E1/6282:6295, 1/E1/6324:6335 | No text annotation | ||
| IL_7A01_001 | 1/K3/23:25, 1/K3/649:651 | Isolated non-canonical cWW pair | geometric IL_6IA2_002 IL_87907.2 | |
| IL_7A01_002 | 1/K3/34:36, 1/K3/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_7A01_003 | 1/K3/37:40, 1/K3/514:518 | Double sheared | geometric IL_5AOX_003 IL_09705.15 | |
| IL_7A01_004 | 1/K3/41:47, 1/K3/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_7A01_005 | 1/K3/49:52, 1/K3/475:477 | No text annotation | geometric IL_4P3T_002 NA | |
| IL_7A01_006 | 1/K3/57:62, 1/K3/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_7A01_007 | 1/K3/63:68, 1/K3/81:85 | No text annotation | ||
| IL_7A01_008 | 1/K3/108:115, 1/K3/349:353 | No text annotation | ||
| IL_7A01_009 | 1/K3/115:116, 1/K3/347:349 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_7A01_010 | 1/K3/116:123, 1/K3/341:347 | No text annotation | ||
| IL_7A01_011 | 1/K3/123:125, 1/K3/338:341 | No text annotation | ||
| IL_7A01_012 | 1/K3/145:151, 1/K3/167:174 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_7A01_013 | 1/K3/188:192, 1/K3/207:211 | No text annotation | ||
| IL_7A01_014 | 1/K3/239:241, 1/K3/281:282 | Single stack bend | geometric IL_5VSU_003 IL_26793.1 | |
| IL_7A01_015 | 1/K3/241:246, 1/K3/274:281 | No text annotation | ||
| IL_7A01_016 | 1/K3/247:249, 1/K3/270:273 | No text annotation | ||
| IL_7A01_017 | 1/K3/317:319, 1/K3/332:333 | Single stack bend | geometric IL_5TBW_004 NA | |
| IL_7A01_018 | 1/K3/359:364, 1/K3/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_7A01_299 | 1/K3/366:371, 1/K3/393:394 | No text annotation | homologous IL_8P9A_392 IL_47074.2 | |
| IL_7A01_020 | 1/K3/411:413, 1/K3/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_7A01_021 | 1/K3/437:439, 1/K3/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_7A01_269 | 1/K3/459:461, 1/K3/468:470 | No text annotation | homologous IL_8P9A_395 IL_42997.3 | |
| IL_7A01_300 | 1/K3/487:489, 1/K3/511:512 | Single bulged U | homologous IL_8P9A_396 IL_89505.4 | |
| IL_7A01_024 | 1/K3/491:495, 1/K3/508:509 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_7A01_270 | 1/K3/491:496, 1/K3/506:509 | C-loop with extra cWW pair | geometric IL_4V88_408 NA | |
| IL_7A01_025 | 1/K3/495:496, 1/K3/506:508 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_7A01_026 | 1/K3/527:530, 1/K3/554:558 | No text annotation | ||
| IL_7A01_027 | 1/K3/530:534, 1/K3/549:554 | No text annotation | ||
| IL_7A01_271 | 1/K3/530:537, 1/K3/546:554 | No text annotation | ||
| IL_7A01_028 | 1/K3/534:537, 1/K3/546:549 | No text annotation | ||
| IL_7A01_029 | 1/K3/566:569, 1/K3/581:584 | Tandem non-canonical cWW pairs | geometric IL_5C5W_003 NA | |
| IL_7A01_030 | 1/K3/599:606, 1/K3/636:637 | SSU/LSU pseudoknot | homologous IL_4V88_413 NA | |
| IL_7A01_031 | 1/K3/606:608, 1/K3/635:636 | Single bulged U | geometric IL_8C3A_068 NA | |
| IL_7A01_032 | 1/K3/611:617, 1/K3/624:632 | Kink-turn related | homologous IL_8C3A_425 NA | |
| IL_7A01_033 | 1/K3/663:665, 1/K3/1162:1164 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_7A01_034 | 1/K3/673:675, 1/K3/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_7A01_035 | 1/K3/676:681, 1/K3/1024:1029 | No text annotation | geometric IL_8ZA4_001 IL_76308.6 | |
| IL_7A01_036 | 1/K3/692:694, 1/K3/738:739 | No text annotation | ||
| IL_7A01_037 | 1/K3/698:699, 1/K3/731:734 | Multiple bulged bases | geometric IL_3IGI_013 IL_42626.2 | |
| IL_7A01_038 | 1/K3/752:754, 1/K3/790:791 | No text annotation | ||
| IL_7A01_039 | 1/K3/802:803, 1/K3/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_7A01_040 | 1/K3/805:807, 1/K3/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_7A01_041 | 1/K3/873:874, 1/K3/912:914 | No text annotation | ||
| IL_7A01_042 | 1/K3/874:879, 1/K3/907:912 | No text annotation | ||
| IL_7A01_043 | 1/K3/922:923, 1/K3/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_7A01_274 | 1/K3/925:926, 1/K3/1015:1017 | Single bulged U | geometric IL_7KVT_002 IL_89505.4 | |
| IL_7A01_275 | 1/K3/926:935, 1/K3/1007:1015 | No text annotation | ||
| IL_7A01_045 | 1/K3/928:935, 1/K3/1007:1013 | No text annotation | ||
| IL_7A01_046 | 1/K3/942:945, 1/K3/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_7A01_047 | 1/K3/952:956, 1/K3/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_7A01_048 | 1/K3/1042:1047, 1/K3/1071:1073 | Other IL | homologous IL_4V88_435 NA | |
| IL_7A01_049 | 1/K3/1047:1051, 1/K3/1067:1071 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_7A01_050 | 1/K3/1091:1093, 1/K3/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_7A01_051 | 1/K3/1098:1103, 1/K3/1129:1134 | No text annotation | ||
| IL_7A01_052 | 1/K3/1108:1110, 1/K3/1123:1124 | Minor groove platform | geometric IL_5J7L_004 IL_51454.3 | |
| IL_7A01_053 | 1/K3/1168:1175, 1/K3/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_7A01_054 | 1/K3/1203:1205, 1/K3/1693:1696 | Isolated non-canonical cWW pair | geometric IL_6IA2_005 IL_87907.2 | |
| IL_7A01_055 | 1/K3/1205:1208, 1/K3/1691:1693 | Isolated non-canonical cWW pair | geometric IL_4V9K_064 IL_87907.2 | |
| IL_7A01_056 | 1/K3/1214:1217, 1/K3/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_7A01_057 | 1/K3/1230:1232, 1/K3/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_7A01_058 | 1/K3/1235:1236, 1/K3/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_7A01_059 | 1/K3/1270:1272, 1/K3/1510:1512 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
| IL_7A01_277 | 1/K3/1281:1294, 1/K3/1305:1316 | No text annotation | ||
| IL_7A01_060 | 1/K3/1325:1327, 1/K3/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_7A01_061 | 1/K3/1328:1333, 1/K3/1498:1501 | Double sheared | geometric IL_4V88_471 NA | |
| IL_7A01_278 | 1/K3/1328:1335, 1/K3/1492:1501 | No text annotation | ||
| IL_7A01_279 | 1/K3/1333:1335, 1/K3/1492:1498 | No text annotation | homologous IL_8P9A_440 IL_49061.1 | |
| IL_7A01_063 | 1/K3/1337:1338, 1/K3/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_7A01_064 | 1/K3/1347:1349, 1/K3/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_7A01_065 | 1/K3/1363:1365, 1/K3/1374:1375 | Minor groove platform | geometric IL_5J7L_004 IL_51454.3 | |
| IL_7A01_066 | 1/K3/1400:1402, 1/K3/1445:1446 | No text annotation | ||
| IL_7A01_067 | 1/K3/1402:1405, 1/K3/1441:1445 | No text annotation | ||
| IL_7A01_068 | 1/K3/1407:1411, 1/K3/1434:1439 | No text annotation | ||
| IL_7A01_301 | 1/K3/1407:1413, 1/K3/1433:1439 | No text annotation | ||
| IL_7A01_069 | 1/K3/1411:1413, 1/K3/1433:1434 | No text annotation | ||
| IL_7A01_070 | 1/K3/1414:1416, 1/K3/1429:1432 | Isolated non-canonical cWW pair | geometric IL_1ZZ5_002 IL_87907.2 | |
| IL_7A01_071 | 1/K3/1417:1420, 1/K3/1427:1428 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_7A01_072 | 1/K3/1453:1456, 1/K3/1470:1475 | No text annotation | ||
| IL_7A01_073 | 1/K3/1537:1539, 1/K3/1594:1596 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_7A01_283 | 1/K3/1541:1558, 1/K3/1577:1592 | No text annotation | ||
| IL_7A01_074 | 1/K3/1559:1562, 1/K3/1573:1576 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_7A01_075 | 1/K3/1604:1610, 1/K3/1629:1635 | No text annotation | ||
| IL_7A01_076 | 1/K3/1706:1708, 1/K3/1826:1828 | Isolated non-canonical cWW pair | geometric IL_7A0S_020 IL_87907.2 | |
| IL_7A01_077 | 1/K3/1708:1711, 1/K3/1822:1826 | No text annotation | ||
| IL_7A01_078 | 1/K3/1714:1716, 1/K3/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_7A01_079 | 1/K3/1717:1720, 1/K3/1813:1816 | Double sheared | geometric IL_4V88_468 NA | |
| IL_7A01_080 | 1/K3/1720:1722, 1/K3/1812:1813 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_7A01_081 | 1/K3/1729:1731, 1/K3/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_7A01_082 | 1/K3/1733:1736, 1/K3/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_7A01_083 | 1/K3/1739:1742, 1/K3/1792:1795 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_7A01_084 | 1/K3/1742:1746, 1/K3/1788:1792 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_7A01_303 | 1/K3/1750:1752, 1/K3/1780:1784 | No text annotation | ||
| IL_7A01_087 | 1/d2/15:16, 1/d2/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7A01_088 | 1/d2/21:27, 1/d2/52:57 | No text annotation | ||
| IL_7A01_089 | 1/d2/28:29, 1/d2/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_7A01_090 | 1/d2/32:36, 1/d2/41:45 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_7A01_091 | 1/d2/71:78, 1/d2/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7A01_092 | 1/d2/79:81, 1/d2/95:97 | Isolated non-canonical cWW pair | geometric IL_1UN6_005 IL_87907.2 | |
| IL_7A01_093 | 1/d2/82:85, 1/d2/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7A01_094 | 1/e2/6:7, 1/h2/149:151 | Single bulged C | homologous IL_5TBW_002 NA | |
| IL_7A01_095 | 1/e2/12:14, 1/h2/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_7A01_096 | 1/e2/16:18, 1/h2/139:141 | Isolated non-canonical cWW pair | geometric IL_5C5W_002 IL_87907.2 | |
| IL_7A01_097 | 1/e2/26:27, 1/e2/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7A01_098 | 1/e2/30:37, 1/e2/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_84694.2 | |
| IL_7A01_099 | 1/e2/81:88, 1/e2/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7A01_100 | 1/e2/118:121, 1/e2/152:153 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_7A01_304 | 1/e2/118:122, 1/e2/147:153 | No text annotation | ||
| IL_7A01_305 | 1/e2/121:122, 1/e2/147:152 | No text annotation | homologous IL_8CRE_007 IL_92634.2 | |
| IL_7A01_102 | 1/e2/125:126, 1/e2/142:144 | Single bulged C | geometric IL_1S03_006 IL_61258.15 | |
| IL_7A01_306 | 1/e2/168:173, 1/e2/263:267 | No text annotation | ||
| IL_7A01_104 | 1/e2/180:182, 1/e2/255:256 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_7A01_105 | 1/e2/182:189, 1/e2/252:255 | No text annotation | ||
| IL_7A01_106 | 1/e2/195:196, 1/e2/244:246 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_7A01_107 | 1/e2/199:201, 1/e2/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7A01_108 | 1/e2/339:342, 1/h2/32:33 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 IL_95583.2 | |
| IL_7A01_109 | 1/e2/348:350, 1/h2/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_7A01_110 | 1/e2/387:390, 1/e2/401:414 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_7A01_111 | 1/e2/415:421, 1/h2/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_7A01_112 | 1/e2/439:440, 1/e2/1307:1309 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_7A01_113 | 1/e2/442:446, 1/e2/1300:1305 | No text annotation | ||
| IL_7A01_114 | 1/e2/459:460, 1/e2/695:697 | No text annotation | ||
| IL_7A01_115 | 1/e2/462:464, 1/e2/691:693 | Isolated non-canonical cWW pair | geometric IL_3DIL_006 IL_87907.2 | |
| IL_7A01_116 | 1/e2/466:473, 1/e2/681:689 | No text annotation | ||
| IL_7A01_117 | 1/e2/482:486, 1/e2/670:672 | Isolated non-canonical cWW pair | geometric IL_3TD0_002 IL_57744.1 | |
| IL_7A01_118 | 1/e2/488:490, 1/e2/663:668 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_7A01_119 | 1/e2/491:494, 1/e2/660:662 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_57744.1 | |
| IL_7A01_120 | 1/e2/497:499, 1/e2/656:657 | No text annotation | ||
| IL_7A01_121 | 1/e2/500:504, 1/e2/654:655 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.4 | |
| IL_7A01_122 | 1/e2/508:510, 1/e2/649:650 | Single bulged A | geometric IL_6WPI_001 IL_31462.6 | |
| IL_7A01_123 | 1/e2/511:515, 1/e2/646:648 | No text annotation | ||
| IL_7A01_124 | 1/e2/520:521, 1/e2/638:641 | No text annotation | ||
| IL_7A01_125 | 1/e2/708:709, 1/e2/1287:1289 | Single bulged G | geometric IL_4LFB_036 IL_00225.13 | |
| IL_7A01_126 | 1/e2/722:724, 1/e2/942:946 | No text annotation | ||
| IL_7A01_127 | 1/e2/726:731, 1/e2/938:940 | No text annotation | ||
| IL_7A01_128 | 1/e2/731:735, 1/e2/928:938 | No text annotation | ||
| IL_7A01_129 | 1/e2/735:737, 1/e2/927:928 | No text annotation | ||
| IL_7A01_130 | 1/e2/740:742, 1/e2/922:924 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_7A01_288 | 1/e2/742:744, 1/e2/921:922 | Single stack bend | geometric IL_5J7L_249 IL_90729.1 | |
| IL_7A01_131 | 1/e2/743:745, 1/e2/920:921 | Not an internal loop | geometric IL_4UYK_002 NA | |
| IL_7A01_132 | 1/e2/745:749, 1/e2/914:920 | No text annotation | ||
| IL_7A01_289 | 1/e2/745:753, 1/e2/910:920 | No text annotation | ||
| IL_7A01_133 | 1/e2/749:753, 1/e2/910:914 | Triple non-canonical cWW pairs | geometric IL_8VMA_004 IL_49751.4 | |
| IL_7A01_134 | 1/e2/1073:1074, 1/e2/1236:1239 | No text annotation | ||
| IL_7A01_135 | 1/e2/1074:1076, 1/e2/1234:1236 | Isolated non-canonical cWW pair | geometric IL_5UNE_007 IL_87907.2 | |
| IL_7A01_136 | 1/e2/1077:1079, 1/e2/1221:1233 | No text annotation | ||
| IL_7A01_137 | 1/e2/1081:1082, 1/e2/1217:1219 | Single stack bend | geometric IL_6FZ0_001 IL_90729.1 | |
| IL_7A01_138 | 1/e2/1082:1084, 1/e2/1213:1217 | No text annotation | ||
| IL_7A01_139 | 1/e2/1086:1087, 1/e2/1209:1211 | Single bulged C | geometric IL_3SN2_001 IL_61258.15 | |
| IL_7A01_140 | 1/e2/1097:1098, 1/e2/1197:1199 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_7A01_141 | 1/e2/1173:1175, 1/e2/1186:1188 | Isolated non-canonical cWW pair | geometric IL_5TBW_068 NA | |
| IL_7A01_142 | 1/e2/1357:1360, 1/e2/1378:1382 | No text annotation | ||
| IL_7A01_143 | 1/e2/1360:1361, 1/e2/1376:1378 | No text annotation | ||
| IL_7A01_144 | 1/e2/1425:1429, 1/e2/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_7A01_145 | 1/e2/1431:1434, 1/e2/1450:1453 | Double sheared | geometric IL_4KZD_002 IL_09705.15 | |
| IL_7A01_146 | 1/e2/1467:1468, 1/e2/1496:1498 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_7A01_147 | 1/e2/1474:1476, 1/e2/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_7A01_148 | 1/e2/1479:1480, 1/e2/1484:1486 | No text annotation | ||
| IL_7A01_149 | 1/e2/1520:1522, 1/e2/1655:1657 | Isolated non-canonical cWW pair | homologous IL_5TBW_027 NA | |
| IL_7A01_150 | 1/e2/1522:1526, 1/e2/1648:1655 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_54041.2 | |
| IL_7A01_307 | 1/e2/1550:1551, 1/e2/1576:1578 | No text annotation | homologous IL_8CRE_032 IL_00225.13 | |
| IL_7A01_290 | 1/e2/1551:1555, 1/e2/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_7A01_153 | 1/e2/1586:1589, 1/e2/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7A01_154 | 1/e2/1590:1592, 1/e2/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7A01_155 | 1/e2/1624:1627, 1/e2/1635:1640 | No text annotation | ||
| IL_7A01_156 | 1/e2/1671:1673, 1/e2/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7A01_157 | 1/e2/1686:1688, 1/e2/1847:1850 | No text annotation | ||
| IL_7A01_158 | 1/e2/1723:1725, 1/e2/1837:1839 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_7A01_159 | 1/e2/1732:1737, 1/e2/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_7A01_160 | 1/e2/1737:1738, 1/e2/1790:1792 | Minor groove platform | geometric IL_6DLR_003 IL_51454.3 | |
| IL_7A01_161 | 1/e2/1739:1744, 1/e2/1786:1789 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_7A01_162 | 1/e2/1745:1749, 1/e2/1781:1785 | No text annotation | homologous IL_8C3A_044 NA | |
| IL_7A01_163 | 1/e2/1749:1751, 1/e2/1779:1781 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_7A01_164 | 1/e2/1753:1756, 1/e2/1775:1777 | No text annotation | geometric IL_4V84_070 NA | |
| IL_7A01_165 | 1/e2/1756:1760, 1/e2/1772:1775 | No text annotation | ||
| IL_7A01_166 | 1/e2/1857:1859, 1/e2/1873:1875 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_7A01_168 | 1/e2/1881:1883, 1/e2/1894:1896 | No text annotation | ||
| IL_7A01_169 | 1/e2/1904:1908, 1/e2/2066:2070 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_7A01_170 | 1/e2/1910:1917, 1/e2/2063:2064 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_7A01_292 | 1/e2/1910:1919, 1/e2/2062:2064 | Isolated non-canonical cWW pair | geometric IL_8C3A_085 NA | |
| IL_7A01_171 | 1/e2/1917:1919, 1/e2/2062:2063 | No text annotation | ||
| IL_7A01_172 | 1/e2/1919:1921, 1/e2/2061:2062 | No text annotation | ||
| IL_7A01_173 | 1/e2/1925:1932, 1/e2/2052:2057 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_7A01_174 | 1/e2/1932:1943, 1/e2/2037:2052 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7A01_175 | 1/e2/1945:1947, 1/e2/2034:2035 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7A01_176 | 1/e2/1956:1964, 1/e2/2021:2025 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_7A01_177 | 1/e2/1965:1967, 1/e2/2017:2020 | No text annotation | ||
| IL_7A01_178 | 1/e2/1972:1976, 1/e2/1988:1992 | No text annotation | ||
| IL_7A01_179 | 1/e2/2000:2004, 1/e2/2013:2015 | No text annotation | homologous IL_8P9A_284 IL_51387.2 | |
| IL_7A01_180 | 1/e2/2082:2084, 1/e2/2272:2273 | No text annotation | ||
| IL_7A01_181 | 1/e2/2290:2292, 1/e2/2342:2345 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7A01_182 | 1/e2/2299:2301, 1/e2/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7A01_183 | 1/e2/2302:2310, 1/e2/2328:2333 | No text annotation | ||
| IL_7A01_184 | 1/e2/2312:2314, 1/e2/2325:2326 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_7A01_185 | 1/e2/2358:2364, 1/e2/3858:3863 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_7A01_186 | 1/e2/2415:2419, 1/e2/2427:2429 | C-loop | geometric IL_7A0S_047 IL_83150.2 | |
| IL_7A01_308 | 1/e2/2446:2450, 1/e2/2509:2514 | UAA/GAN | homologous IL_8P9A_291 IL_38507.2 | |
| IL_7A01_188 | 1/e2/2477:2479, 1/e2/2499:2500 | Minor groove platform | geometric IL_6DLR_003 IL_51454.3 | |
| IL_7A01_189 | 1/e2/2542:2547, 1/e2/2772:2774 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_57744.1 | |
| IL_7A01_190 | 1/e2/2589:2593, 1/e2/2752:2756 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_7A01_293 | 1/e2/2598:2602, 1/e2/2737:2747 | No text annotation | ||
| IL_7A01_191 | 1/e2/2613:2614, 1/e2/2724:2726 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_7A01_192 | 1/e2/2614:2615, 1/e2/2722:2724 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_7A01_193 | 1/e2/2646:2648, 1/e2/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_85599.2 | |
| IL_7A01_194 | 1/e2/2651:2653, 1/e2/2681:2682 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_7A01_195 | 1/e2/2656:2662, 1/e2/2672:2678 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_7A01_196 | 1/e2/2704:2705, 1/e2/2710:2712 | Single bulged G | geometric IL_5TBW_029 NA | |
| IL_7A01_197 | 1/e2/2832:2838, 1/e2/3850:3853 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_7A01_198 | 1/e2/2843:2846, 1/e2/3842:3845 | No text annotation | ||
| IL_7A01_199 | 1/e2/2847:2850, 1/e2/3840:3841 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_7A01_294 | 1/e2/2847:2855, 1/e2/3837:3841 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_7A01_200 | 1/e2/2850:2855, 1/e2/3837:3840 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_7A01_201 | 1/e2/2867:2872, 1/e2/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
| IL_7A01_202 | 1/e2/2889:2891, 1/e2/3610:3612 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
| IL_7A01_203 | 1/e2/2896:2897, 1/e2/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7A01_204 | 1/e2/3632:3633, 1/e2/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7A01_205 | 1/e2/3660:3665, 1/e2/3677:3684 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_7A01_206 | 1/e2/3700:3703, 1/e2/3749:3750 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_7A01_207 | 1/e2/3704:3706, 1/e2/3744:3748 | Single bulged G, near cWW | geometric IL_6CZR_128 NA | |
| IL_7A01_208 | 1/e2/3708:3710, 1/e2/3741:3742 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_7A01_209 | 1/e2/3710:3714, 1/e2/3739:3741 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_7A01_210 | 1/e2/3715:3721, 1/e2/3732:3738 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_7A01_211 | 1/e2/3780:3781, 1/e2/3811:3814 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_7A01_212 | 1/e2/3781:3792, 1/e2/3808:3811 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_7A01_213 | 1/e2/3895:3898, 1/e2/4563:4565 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_7A01_214 | 1/e2/3900:3902, 1/e2/4558:4561 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_7A01_215 | 1/e2/3913:3915, 1/e2/4388:4389 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_7A01_216 | 1/e2/3916:3917, 1/e2/4384:4387 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_7A01_217 | 1/e2/3927:3929, 1/e2/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7A01_295 | 1/e2/3948:3980, 1/e2/4025:4065 | No text annotation | ||
| IL_7A01_218 | 1/e2/3974:3980, 1/e2/4025:4037 | No text annotation | ||
| IL_7A01_219 | 1/e2/3983:3985, 1/e2/4018:4022 | No text annotation | ||
| IL_7A01_220 | 1/e2/3986:3988, 1/e2/4014:4017 | No text annotation | ||
| IL_7A01_221 | 1/e2/3988:3989, 1/e2/4012:4014 | No text annotation | ||
| IL_7A01_222 | 1/e2/3991:3994, 1/e2/4009:4010 | No text annotation | ||
| IL_7A01_223 | 1/e2/3994:3996, 1/e2/4006:4009 | No text annotation | ||
| IL_7A01_224 | 1/e2/4082:4088, 1/e2/4161:4164 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7A01_225 | 1/e2/4191:4192, 1/e2/4202:4204 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_7A01_226 | 1/e2/4243:4245, 1/e2/4263:4267 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_7A01_227 | 1/e2/4291:4293, 1/e2/4317:4318 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_7A01_228 | 1/e2/4295:4297, 1/e2/4314:4315 | Single stack bend | geometric IL_4V9F_005 IL_90729.1 | |
| IL_7A01_229 | 1/e2/4297:4298, 1/e2/4312:4314 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_7A01_230 | 1/e2/4347:4350, 1/e2/4364:4365 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_7A01_231 | 1/e2/4400:4401, 1/e2/4442:4444 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_7A01_232 | 1/e2/4401:4403, 1/e2/4440:4442 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_7A01_233 | 1/e2/4403:4405, 1/e2/4439:4440 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_7A01_234 | 1/e2/4405:4407, 1/e2/4435:4439 | Major groove minor groove platform with extra cWW | homologous IL_5TBW_105 NA | |
| IL_7A01_235 | 1/e2/4412:4416, 1/e2/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_7A01_236 | 1/e2/4453:4454, 1/e2/4526:4528 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_7A01_237 | 1/e2/4456:4458, 1/e2/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_7A01_238 | 1/e2/4458:4459, 1/e2/4517:4520 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_7A01_239 | 1/e2/4466:4470, 1/e2/4485:4491 | No text annotation | ||
| IL_7A01_240 | 1/e2/4495:4497, 1/e2/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_7A01_241 | 1/e2/4537:4538, 1/e2/4547:4549 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_7A01_242 | 1/e2/4580:4582, 1/e2/4721:4723 | Isolated cWH basepair | geometric IL_4E5C_001 IL_10167.6 | |
| IL_7A01_243 | 1/e2/4582:4585, 1/e2/4717:4721 | Other IL | geometric IL_4WF9_054 IL_99646.2 | |
| IL_7A01_244 | 1/e2/4590:4592, 1/e2/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_7A01_245 | 1/e2/4596:4603, 1/e2/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_116 NA | |
| IL_7A01_246 | 1/e2/4624:4629, 1/e2/4669:4673 | No text annotation | geometric IL_5TBW_062 NA | |
| IL_7A01_247 | 1/e2/4632:4637, 1/e2/4662:4666 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_7A01_248 | 1/e2/4638:4640, 1/e2/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10167.6 | |
| IL_7A01_249 | 1/e2/4641:4642, 1/e2/4655:4658 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_7A01_250 | 1/e2/4680:4685, 1/e2/4705:4710 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_7A01_251 | 1/e2/4739:4742, 1/e2/4958:4960 | No text annotation | ||
| IL_7A01_252 | 1/e2/4743:4746, 1/e2/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 IL_85033.2 | |
| IL_7A01_309 | 1/e2/4747:4749, 1/e2/4952:4953 | Single stack bend | geometric IL_8C3A_146 NA | |
| IL_7A01_254 | 1/e2/4755:4765, 1/e2/4869:4878 | No text annotation | ||
| IL_7A01_255 | 1/e2/4769:4772, 1/e2/4863:4865 | No text annotation | geometric IL_4V84_070 NA | |
| IL_7A01_256 | 1/e2/4773:4775, 1/e2/4861:4862 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_7A01_257 | 1/e2/4775:4777, 1/e2/4860:4861 | Single stack bend | geometric IL_7KGA_006 IL_26793.1 | |
| IL_7A01_258 | 1/e2/4885:4888, 1/e2/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_7A01_259 | 1/e2/4891:4896, 1/e2/4924:4928 | No text annotation | ||
| IL_7A01_260 | 1/e2/4899:4901, 1/e2/4920:4921 | Single bulged C | geometric IL_1S03_006 IL_61258.15 | |
| IL_7A01_261 | 1/e2/4992:4994, 1/e2/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_87907.2 | |
| IL_7A01_262 | 1/e2/4996:4997, 1/e2/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_61258.15 | |
| IL_7A01_263 | 1/e2/5000:5002, 1/e2/5045:5050 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_7A01_264 | 1/e2/5003:5009, 1/e2/5039:5044 | No text annotation | ||
| IL_7A01_265 | 1/e2/5012:5014, 1/e2/5035:5036 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_7A01_266 | 1/e2/5014:5017, 1/e2/5032:5035 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_7A01_267 | 1/h2/64:66, 1/h2/92:95 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7A01_019 | No text annotation | ||
| IL_7A01_022 | No text annotation | ||
| IL_7A01_023 | Isolated non-canonical cWW pair | ||
| IL_7A01_272 | No text annotation | ||
| IL_7A01_273 | Major groove minor groove platform with extra cWW | ||
| IL_7A01_044 | No text annotation | ||
| IL_7A01_276 | No text annotation | ||
| IL_7A01_062 | No text annotation | ||
| IL_7A01_280 | No text annotation | ||
| IL_7A01_281 | No text annotation | ||
| IL_7A01_282 | No text annotation | ||
| IL_7A01_284 | Tandem non-canonical cWW pairs | ||
| IL_7A01_302 | Isolated non-canonical cWW pair | ||
| IL_7A01_285 | No text annotation | ||
| IL_7A01_085 | No text annotation | ||
| IL_7A01_086 | Isolated near basepair | ||
| IL_7A01_286 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_7A01_287 | No text annotation | ||
| IL_7A01_101 | No text annotation | ||
| IL_7A01_103 | No text annotation | ||
| IL_7A01_151 | Isolated cWH basepair | ||
| IL_7A01_152 | Triple sheared with non-canonical cWW | ||
| IL_7A01_167 | No text annotation | ||
| IL_7A01_291 | No text annotation | ||
| IL_7A01_187 | UAA/GAN with extra cWW | ||
| IL_7A01_296 | No text annotation | ||
| IL_7A01_253 | No text annotation | ||
| IL_7A01_297 | No text annotation | ||
| IL_7A01_298 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7A01_001 | 1/K3/40:41, 1/K3/481:487, 1/K3/512:514 | No text annotation | homologous J3_8C3A_082 NA | |
| J3_7A01_033 | 1/K3/223:239, 1/K3/282:288, 1/K3/295:298 | No text annotation | ||
| J3_7A01_050 | 1/K3/682:684, 1/K3/918:922, 1/K3/1022:1023 | No text annotation | homologous J3_8P9A_071 J3_56052.5 | |
| J3_7A01_051 | 1/K3/682:684, 1/K3/918:923, 1/K3/1019:1023 | No text annotation | homologous J3_8CRE_074 J3_17385.4 | |
| J3_7A01_035 | 1/K3/807:819, 1/K3/829:831, 1/K3/843:856 | No text annotation | ||
| J3_7A01_003 | 1/K3/938:941, 1/K3/985:993, 1/K3/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_7A01_004 | 1/K3/1094:1096, 1/K3/1136:1141, 1/K3/1147:1151 | No text annotation | ||
| J3_7A01_005 | 1/K3/1218:1221, 1/K3/1645:1651, 1/K3/1673:1680 | No text annotation | ||
| J3_7A01_006 | 1/K3/1224:1228, 1/K3/1530:1532, 1/K3/1638:1642 | No text annotation | ||
| J3_7A01_007 | 1/K3/1237:1245, 1/K3/1254:1266, 1/K3/1516:1520 | No text annotation | ||
| J3_7A01_052 | 1/K3/1272:1277, 1/K3/1320:1324, 1/K3/1504:1510 | No text annotation | homologous J3_8CRE_081 J3_87797.1 | |
| J3_7A01_009 | 1/K3/1340:1345, 1/K3/1384:1389, 1/K3/1481:1486 | No text annotation | homologous J3_4V88_039 NA | |
| J3_7A01_010 | 1/K3/1350:1351, 1/K3/1360:1363, 1/K3/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_7A01_011 | 1/K3/1391:1399, 1/K3/1447:1453, 1/K3/1475:1479 | No text annotation | ||
| J3_7A01_053 | 1/K3/1391:1399, 1/K3/1447:1456, 1/K3/1470:1479 | No text annotation | ||
| J3_7A01_012 | 1/K3/1532:1537, 1/K3/1596:1604, 1/K3/1635:1638 | No text annotation | ||
| J3_7A01_013 | 1/d2/9:14, 1/d2/65:66, 1/d2/109:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_7A01_014 | 1/e2/112:116, 1/e2/155:160, 1/e2/275:278 | No text annotation | ||
| J3_7A01_039 | 1/e2/196:199, 1/e2/215:228, 1/e2/240:244 | No text annotation | ||
| J3_7A01_040 | 1/e2/351:367, 1/e2/374:379, 1/h2/21:24 | No text annotation | homologous J3_8C3A_047 NA | |
| J3_7A01_015 | 1/e2/380:387, 1/e2/414:415, 1/h2/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7A01_041 | 1/e2/380:390, 1/e2/401:415, 1/h2/19:20 | No text annotation | homologous J3_8P9A_047 J3_92134.2 | |
| J3_7A01_016 | 1/e2/448:455, 1/e2/701:704, 1/e2/1293:1298 | No text annotation | ||
| J3_7A01_042 | 1/e2/711:713, 1/e2/955:976, 1/e2/1278:1285 | No text annotation | ||
| J3_7A01_054 | 1/e2/1100:1108, 1/e2/1165:1168, 1/e2/1193:1195 | No text annotation | ||
| J3_7A01_019 | 1/e2/1531:1537, 1/e2/1622:1624, 1/e2/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7A01_043 | 1/e2/1531:1537, 1/e2/1622:1627, 1/e2/1635:1643 | No text annotation | ||
| J3_7A01_020 | 1/e2/1545:1548, 1/e2/1580:1584, 1/e2/1609:1614 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_7A01_021 | 1/e2/1694:1708, 1/e2/1717:1723, 1/e2/1839:1841 | No text annotation | ||
| J3_7A01_044 | 1/e2/1694:1708, 1/e2/1717:1725, 1/e2/1837:1841 | No text annotation | ||
| J3_7A01_045 | 1/e2/1726:1727, 1/e2/1802:1806, 1/e2/1832:1836 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_7A01_022 | 1/e2/1967:1971, 1/e2/1993:2000, 1/e2/2015:2017 | No text annotation | ||
| J3_7A01_023 | 1/e2/2393:2399, 1/e2/2805:2807, 1/e2/2819:2822 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7A01_024 | 1/e2/2402:2405, 1/e2/2785:2791, 1/e2/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_7A01_025 | 1/e2/2440:2445, 1/e2/2515:2519, 1/e2/2536:2537 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_7A01_046 | 1/e2/2451:2456, 1/e2/2465:2476, 1/e2/2501:2508 | No text annotation | ||
| J3_7A01_026 | 1/e2/2549:2555, 1/e2/2572:2575, 1/e2/2757:2770 | No text annotation | ||
| J3_7A01_027 | 1/e2/2575:2576, 1/e2/2585:2589, 1/e2/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7A01_028 | 1/e2/3937:3939, 1/e2/4074:4078, 1/e2/4168:4173 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_7A01_047 | 1/e2/4091:4097, 1/e2/4112:4129, 1/e2/4155:4158 | No text annotation | ||
| J3_7A01_048 | 1/e2/4228:4230, 1/e2/4331:4342, 1/e2/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7A01_029 | 1/e2/4241:4243, 1/e2/4267:4269, 1/e2/4278:4283 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_7A01_030 | 1/e2/4463:4466, 1/e2/4491:4493, 1/e2/4507:4513 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7A01_049 | 1/e2/4749:4754, 1/e2/4879:4884, 1/e2/4935:4952 | No text annotation | ||
| J3_7A01_031 | 1/e2/4970:4975, 1/e2/4983:4991, 1/e2/5060:5063 | No text annotation | ||
| J3_7A01_032 | 1/h2/44:45, 1/h2/58:64, 1/h2/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_7A01_001 | 1/K3/98:106, 1/K3/355:357, 1/K3/405:409, 1/K3/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_7A01_002 | 1/K3/665:673, 1/K3/1032:1037, 1/K3/1078:1089, 1/K3/1160:1162 | No text annotation | ||
| J4_7A01_003 | 1/e2/111:112, 1/e2/278:283, 1/e2/304:310, 1/e2/327:330 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_7A01_004 | 1/e2/196:199, 1/e2/215:222, 1/e2/226:228, 1/e2/240:244 | No text annotation | ||
| J4_7A01_005 | 1/e2/979:983, 1/e2/1070:1074, 1/e2/1236:1248, 1/e2/1262:1275 | No text annotation | ||
| J4_7A01_006 | 1/e2/2365:2371, 1/e2/2389:2391, 1/e2/2824:2829, 1/e2/3856:3857 | No text annotation | ||
| J4_7A01_007 | 1/e2/2406:2410, 1/e2/2434:2439, 1/e2/2538:2539, 1/e2/2777:2784 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_7A01_013 | 1/e2/2618:2619, 1/e2/2637:2642, 1/e2/2692:2698, 1/e2/2718:2719 | No text annotation | ||
| J4_7A01_009 | 1/e2/3634:3638, 1/e2/3650:3654, 1/e2/3690:3694, 1/e2/3821:3826 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_7A01_014 | 1/e2/3696:3698, 1/e2/3752:3755, 1/e2/3769:3780, 1/e2/3814:3819 | No text annotation | ||
| J4_7A01_011 | 1/e2/4231:4235, 1/e2/4289:4291, 1/e2/4318:4319, 1/e2/4328:4330 | No text annotation | ||
| J4_7A01_012 | 1/e2/4587:4590, 1/e2/4620:4621, 1/e2/4676:4678, 1/e2/4712:4715 | No text annotation | ||
| J5_7A01_001 | 1/K3/28:34, 1/K3/521:527, 1/K3/558:565, 1/K3/585:595, 1/K3/641:646 | No text annotation | ||
| J5_7A01_002 | 1/K3/53:56, 1/K3/89:96, 1/K3/434:436, 1/K3/457:459, 1/K3/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_7A01_003 | 1/K3/125:144, 1/K3/175:185, 1/K3/214:220, 1/K3/301:315, 1/K3/335:338 | No text annotation | ||
| J5_7A01_004 | 1/K3/685:690, 1/K3/741:749, 1/K3/794:800, 1/K3/865:874, 1/K3/912:917 | No text annotation | ||
| J5_7A01_005 | 1/e2/19:21, 1/h2/35:42, 1/h2/101:106, 1/h2/113:114, 1/h2/136:138 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_7A01_006 | 1/e2/1335:1341, 1/e2/1515:1519, 1/e2/1658:1661, 1/e2/2288:2290, 1/e2/2345:2351 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_7A01_007 | 1/e2/1352:1355, 1/e2/1384:1399, 1/e2/1418:1421, 1/e2/1464:1466, 1/e2/1499:1504 | No text annotation | ||
| J5_7A01_008 | 1/e2/2855:2863, 1/e2/2887:2888, 1/e2/3613:3614, 1/e2/3618:3626, 1/e2/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_7A01_009 | 1/e2/3903:3910, 1/e2/4392:4400, 1/e2/4444:4453, 1/e2/4528:4534, 1/e2/4552:4557 | No text annotation | ||
| J5_7A01_010 | 1/e2/3920:3923, 1/e2/4188:4191, 1/e2/4204:4205, 1/e2/4227:4228, 1/e2/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J6_7A01_001 | 1/e2/21:26, 1/e2/57:67, 1/e2/74:78, 1/e2/105:109, 1/e2/332:339, 1/h2/33:35 | No text annotation | ||
| J6_7A01_002 | 1/e2/3920:3923, 1/e2/4188:4191, 1/e2/4204:4205, 1/e2/4227:4230, 1/e2/4331:4342, 1/e2/4370:4381 | No text annotation | ||
| J7_7A01_001 | 1/e2/1666:1671, 1/e2/1684:1685, 1/e2/1851:1854, 1/e2/1878:1881, 1/e2/1896:1898, 1/e2/2076:2077, 1/e2/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7A01_002 | No text annotation | ||
| J3_7A01_034 | No text annotation | ||
| J3_7A01_036 | No text annotation | ||
| J3_7A01_008 | No text annotation | ||
| J3_7A01_037 | No text annotation | ||
| J3_7A01_038 | No text annotation | ||
| J3_7A01_017 | No text annotation | ||
| J3_7A01_018 | No text annotation | ||
| J4_7A01_008 | No text annotation | ||
| J4_7A01_010 | No text annotation |
Coloring options: