6GZQ Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/A1/58:67 | NA | NA |
| 2 | ➜ | 1/A1/86:94 | NA | NA |
| 3 | ➜ | 1/A1/121:126 | NA | NA |
| 4 | ➜ | 1/A1/136:141 | NA | NA |
| 5 | ➜ | 1/A1/155:161 | NA | NA |
| 6 | ➜ | 1/A1/178:198 | NA | NA |
| 7 | ➜ | 1/A1/214:221 | NA | NA |
| 8 | ➜ | 1/A1/236:242 | NA | NA |
| 9 | ➜ | 1/A1/270:276 | NA | NA |
| 10 | ➜ | 1/A1/329:338 | NA | NA |
| 11 | ➜ | 1/A1/344:348 | NA | NA |
| 12 | ➜ | 1/A1/352:360 | NA | NA |
| 13 | ➜ | 1/A1/409:421 | NA | NA |
| 14 | ➜ | 1/A1/438:445 | NA | NA |
| 15 | ➜ | 1/A1/490:495 | NA | NA |
| 16 | ➜ | 1/A1/515:520 | NA | NA |
| 17 | ➜ | 1/A1/570:575 | NA | NA |
| 18 | ➜ | 1/A1/589:602 | NA | NA |
| 19 | ➜ | 1/A1/637:643 | NA | NA |
| 20 | ➜ | 1/A1/656:661 | NA | NA |
| 21 | ➜ | 1/A1/668:674 | NA | NA |
| 22 | ➜ | 1/A1/761:768 | NA | NA |
| 23 | ➜ | 1/A1/793:802 | NA | NA |
| 24 | ➜ | 1/A1/828:834 | NA | NA |
| 25 | ➜ | 1/A1/875:880 | NA | NA |
| 26 | ➜ | 1/A1/929:945 | NA | NA |
| 27 | ➜ | 1/A1/1002:1009 | NA | NA |
| 28 | ➜ | 1/A1/1025:1034 | NA | NA |
| 29 | ➜ | 1/A1/1102:1153 | NA | NA |
| 30 | ➜ | 1/A1/1219:1225 | NA | NA |
| 31 | ➜ | 1/A1/1270:1275 | NA | NA |
| 32 | ➜ | 1/A1/1329:1337 | NA | NA |
| 33 | ➜ | 1/A1/1372:1378 | NA | NA |
| 34 | ➜ | 1/A1/1411:1416 | NA | NA |
| 35 | ➜ | 1/A1/1437:1446 | NA | NA |
| 36 | ➜ | 1/A1/1501:1508 | NA | NA |
| 37 | ➜ | 1/A1/1537:1548 | NA | NA |
| 38 | ➜ | 1/A1/1581:1586 | NA | NA |
| 39 | ➜ | 1/A1/1614:1617 | NA | NA |
| 40 | ➜ | 1/A1/1660:1667 | NA | NA |
| 41 | ➜ | 1/A1/1679:1684 | NA | NA |
| 42 | ➜ | 1/A1/1740:1745 | NA | NA |
| 43 | ➜ | 1/A1/1767:1773 | NA | NA |
| 44 | ➜ | 1/A1/1785:1789 | NA | NA |
| 45 | ➜ | 1/A1/1810:1820 | NA | NA |
| 46 | ➜ | 1/A1/1839:1844 | NA | NA |
| 47 | ➜ | 1/A1/1897:1902 | NA | NA |
| 48 | ➜ | 1/A1/1934:1944 | NA | NA |
| 49 | ➜ | 1/A1/1973:1981 | NA | NA |
| 50 | ➜ | 1/A1/2051:2060 | NA | NA |
| 51 | ➜ | 1/A1/2145:2201 | NA | NA |
| 52 | ➜ | 1/A1/2228:2233 | NA | NA |
| 53 | ➜ | 1/A1/2261:2271 | NA | NA |
| 54 | ➜ | 1/A1/2278:2290 | NA | NA |
| 55 | ➜ | 1/A1/2316:2328 | NA | NA |
| 56 | ➜ | 1/A1/2338:2345 | NA | NA |
| 57 | ➜ | 1/A1/2369:2376 | NA | NA |
| 58 | ➜ | 1/A1/2388:2393 | NA | NA |
| 59 | ➜ | 1/A1/2418:2427 | NA | NA |
| 60 | ➜ | 1/A1/2485:2493 | NA | NA |
| 61 | ➜ | 1/A1/2542:2549 | NA | NA |
| 62 | ➜ | 1/A1/2565:2571 | NA | NA |
| 63 | ➜ | 1/A1/2608:2613 | NA | NA |
| 64 | ➜ | 1/A1/2672:2677 | NA | NA |
| 65 | ➜ | 1/A1/2715:2720 | NA | NA |
| 66 | ➜ | 1/A1/2759:2775 | NA | NA |
| 67 | ➜ | 1/A1/2806:2818 | NA | NA |
| 68 | ➜ | 1/A1/2831:2839 | NA | NA |
| 69 | ➜ | 1/A1/2868:2873 | NA | NA |
| 70 | ➜ | 1/A2/12:22 | NA | NA |
| 71 | ➜ | 1/A2/67:95 | NA | NA |
| 72 | ➜ | 1/A2/152:157 | NA | NA |
| 73 | ➜ | 1/A2/186:191 | NA | NA |
| 74 | ➜ | 1/A2/205:213 | NA | NA |
| 75 | ➜ | 1/A2/254:262 | NA | NA |
| 76 | ➜ | 1/A2/291:296 | NA | NA |
| 77 | ➜ | 1/A2/315:328 | NA | NA |
| 78 | ➜ | 1/A2/337:342 | NA | NA |
| 79 | ➜ | 1/A2/374:379 | NA | NA |
| 80 | ➜ | 1/A2/414:419 | NA | NA |
| 81 | ➜ | 1/A2/452:458 | NA | NA |
| 82 | ➜ | 1/A2/505:510 | NA | NA |
| 83 | ➜ | 1/A2/600:606 | NA | NA |
| 84 | ➜ | 1/A2/672:681 | NA | NA |
| 85 | ➜ | 1/A2/709:714 | NA | NA |
| 86 | ➜ | 1/A2/769:779 | NA | NA |
| 87 | ➜ | 1/A2/821:825 | NA | NA |
| 88 | ➜ | 1/A2/839:844 | NA | NA |
| 89 | ➜ | 1/A2/874:879 | NA | NA |
| 90 | ➜ | 1/A2/940:949 | NA | NA |
| 91 | ➜ | 1/A2/989:996 | NA | NA |
| 92 | ➜ | 1/A2/1058:1063 | NA | NA |
| 93 | ➜ | 1/A2/1071:1078 | NA | NA |
| 94 | ➜ | 1/A2/1116:1122 | NA | NA |
| 95 | ➜ | 1/A2/1147:1152 | NA | NA |
| 96 | ➜ | 1/A2/1246:1251 | NA | NA |
| 97 | ➜ | 1/A2/1292:1307 | NA | NA |
| 98 | ➜ | 1/A2/1336:1349 | NA | NA |
| 99 | ➜ | 1/A2/1429:1434 | NA | NA |
| 100 | ➜ | 1/A2/1492:1497 | NA | NA |
| 101 | ➜ | 1/B1/40:46 | NA | NA |
| 102 | ➜ | 1/B1/88:93 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/A1/24:30,1/A1/537:543 | NA | NA |
| 2 | ➜ | 1/A1/36:37,1/A1/470:472 | NA | NA |
| 3 | ➜ | 1/A1/42:43,1/A1/463:465 | NA | NA |
| 4 | ➜ | 1/A1/80:84,1/A1/96:103 | NA | NA |
| 5 | ➜ | 1/A1/173:174,1/A1/202:204 | NA | NA |
| 6 | ➜ | 1/A1/228:235,1/A1/243:249 | NA | NA |
| 7 | ➜ | 1/A1/292:294,1/A1/392:395 | NA | NA |
| 8 | ➜ | 1/A1/318:320,1/A1/368:372 | NA | NA |
| 9 | ➜ | 1/A1/509:512,1/A1/523:536 | NA | NA |
| 10 | ➜ | 1/A1/631:635,1/A1/645:649 | NA | NA |
| 11 | ➜ | 1/A1/721:723,1/A1/855:857 | NA | NA |
| 12 | ➜ | 1/A1/723:727,1/A1/848:855 | NA | NA |
| 13 | ➜ | 1/A1/746:747,1/A1/812:814 | NA | NA |
| 14 | ➜ | 1/A1/751:752,1/A1/777:779 | NA | NA |
| 15 | ➜ | 1/A1/752:756,1/A1/773:777 | NA | NA |
| 16 | ➜ | 1/A1/787:790,1/A1/805:807 | NA | NA |
| 17 | ➜ | 1/A1/824:826,1/A1/836:840 | NA | NA |
| 18 | ➜ | 1/A1/886:887,1/A1/987:989 | NA | NA |
| 19 | ➜ | 1/A1/893:895,1/A1/978:981 | NA | NA |
| 20 | ➜ | 1/A1/895:899,1/A1/975:978 | NA | NA |
| 21 | ➜ | 1/A1/906:911,1/A1/963:968 | NA | NA |
| 22 | ➜ | 1/A1/911:912,1/A1/961:963 | NA | NA |
| 23 | ➜ | 1/A1/912:917,1/A1/957:961 | NA | NA |
| 24 | ➜ | 1/A1/924:929,1/A1/945:950 | NA | NA |
| 25 | ➜ | 1/A1/999:1002,1/A1/1009:1012 | NA | NA |
| 26 | ➜ | 1/A1/1042:1044,1/A1/1207:1208 | NA | NA |
| 27 | ➜ | 1/A1/1046:1050,1/A1/1201:1205 | NA | NA |
| 28 | ➜ | 1/A1/1052:1059,1/A1/1198:1199 | NA | NA |
| 29 | ➜ | 1/A1/1059:1061,1/A1/1197:1198 | NA | NA |
| 30 | ➜ | 1/A1/1066:1072,1/A1/1187:1192 | NA | NA |
| 31 | ➜ | 1/A1/1072:1078,1/A1/1172:1187 | NA | NA |
| 32 | ➜ | 1/A1/1079:1082,1/A1/1169:1171 | NA | NA |
| 33 | ➜ | 1/A1/1091:1101,1/A1/1154:1160 | NA | NA |
| 34 | ➜ | 1/A1/1243:1246,1/A1/1294:1298 | NA | NA |
| 35 | ➜ | 1/A1/1249:1253,1/A1/1288:1291 | NA | NA |
| 36 | ➜ | 1/A1/1255:1262,1/A1/1282:1286 | NA | NA |
| 37 | ➜ | 1/A1/1266:1269,1/A1/1276:1278 | NA | NA |
| 38 | ➜ | 1/A1/1310:1317,1/A1/2035:2041 | NA | NA |
| 39 | ➜ | 1/A1/1358:1361,1/A1/1651:1652 | NA | NA |
| 40 | ➜ | 1/A1/1366:1372,1/A1/1378:1382 | NA | NA |
| 41 | ➜ | 1/A1/1399:1403,1/A1/1424:1428 | NA | NA |
| 42 | ➜ | 1/A1/1405:1409,1/A1/1418:1422 | NA | NA |
| 43 | ➜ | 1/A1/1463:1469,1/A1/1626:1635 | NA | NA |
| 44 | ➜ | 1/A1/1481:1483,1/A1/1606:1609 | NA | NA |
| 45 | ➜ | 1/A1/1484:1488,1/A1/1600:1605 | NA | NA |
| 46 | ➜ | 1/A1/1497:1499,1/A1/1511:1512 | NA | NA |
| 47 | ➜ | 1/A1/1500:1501,1/A1/1508:1510 | NA | NA |
| 48 | ➜ | 1/A1/1518:1522,1/A1/1568:1571 | NA | NA |
| 49 | ➜ | 1/A1/1530:1531,1/A1/1554:1560 | NA | NA |
| 50 | ➜ | 1/A1/1574:1580,1/A1/1587:1595 | NA | NA |
| 51 | ➜ | 1/A1/1700:1705,1/A1/2028:2030 | NA | NA |
| 52 | ➜ | 1/A1/1712:1714,1/A1/2019:2021 | NA | NA |
| 53 | ➜ | 1/A1/1715:1723,1/A1/2014:2018 | NA | NA |
| 54 | ➜ | 1/A1/1735:1740,1/A1/1745:1751 | NA | NA |
| 55 | ➜ | 1/A1/1803:1804,1/A1/2004:2006 | NA | NA |
| 56 | ➜ | 1/A1/1831:1837,1/A1/1846:1854 | NA | NA |
| 57 | ➜ | 1/A1/1870:1873,1/A1/1926:1927 | NA | NA |
| 58 | ➜ | 1/A1/1873:1875,1/A1/1922:1926 | NA | NA |
| 59 | ➜ | 1/A1/1879:1882,1/A1/1917:1918 | NA | NA |
| 60 | ➜ | 1/A1/1884:1888,1/A1/1911:1915 | NA | NA |
| 61 | ➜ | 1/A1/1889:1893,1/A1/1906:1910 | NA | NA |
| 62 | ➜ | 1/A1/1957:1958,1/A1/1988:1991 | NA | NA |
| 63 | ➜ | 1/A1/1958:1969,1/A1/1985:1988 | NA | NA |
| 64 | ➜ | 1/A1/2074:2076,1/A1/2631:2632 | NA | NA |
| 65 | ➜ | 1/A1/2091:2093,1/A1/2456:2457 | NA | NA |
| 66 | ➜ | 1/A1/2094:2095,1/A1/2452:2455 | NA | NA |
| 67 | ➜ | 1/A1/2105:2107,1/A1/2250:2253 | NA | NA |
| 68 | ➜ | 1/A1/2109:2111,1/A1/2246:2248 | NA | NA |
| 69 | ➜ | 1/A1/2131:2145,1/A1/2201:2206 | NA | NA |
| 70 | ➜ | 1/A1/2311:2313,1/A1/2331:2335 | NA | NA |
| 71 | ➜ | 1/A1/2364:2367,1/A1/2378:2381 | NA | NA |
| 72 | ➜ | 1/A1/2415:2417,1/A1/2428:2429 | NA | NA |
| 73 | ➜ | 1/A1/2467:2468,1/A1/2512:2514 | NA | NA |
| 74 | ➜ | 1/A1/2468:2469,1/A1/2510:2512 | NA | NA |
| 75 | ➜ | 1/A1/2469:2475,1/A1/2503:2510 | NA | NA |
| 76 | ➜ | 1/A1/2480:2484,1/A1/2494:2498 | NA | NA |
| 77 | ➜ | 1/A1/2521:2522,1/A1/2594:2596 | NA | NA |
| 78 | ➜ | 1/A1/2524:2526,1/A1/2588:2592 | NA | NA |
| 79 | ➜ | 1/A1/2526:2527,1/A1/2585:2588 | NA | NA |
| 80 | ➜ | 1/A1/2536:2537,1/A1/2554:2557 | NA | NA |
| 81 | ➜ | 1/A1/2605:2607,1/A1/2614:2617 | NA | NA |
| 82 | ➜ | 1/A1/2650:2654,1/A1/2789:2797 | NA | NA |
| 83 | ➜ | 1/A1/2666:2672,1/A1/2677:2682 | NA | NA |
| 84 | ➜ | 1/A1/2694:2700,1/A1/2738:2742 | NA | NA |
| 85 | ➜ | 1/A1/2701:2705,1/A1/2733:2737 | NA | NA |
| 86 | ➜ | 1/A1/2709:2710,1/A1/2725:2729 | NA | NA |
| 87 | ➜ | 1/A1/2752:2757,1/A1/2777:2782 | NA | NA |
| 88 | ➜ | 1/A1/2850:2851,1/A1/2890:2892 | NA | NA |
| 89 | ➜ | 1/A1/2855:2859,1/A1/2881:2886 | NA | NA |
| 90 | ➜ | 1/A1/2859:2864,1/A1/2877:2881 | NA | NA |
| 91 | ➜ | 1/A2/30:32,1/A2/535:536 | NA | NA |
| 92 | ➜ | 1/A2/44:45,1/A2/391:393 | NA | NA |
| 93 | ➜ | 1/A2/47:52,1/A2/354:356 | NA | NA |
| 94 | ➜ | 1/A2/54:56,1/A2/351:352 | NA | NA |
| 95 | ➜ | 1/A2/63:66,1/A2/96:97 | NA | NA |
| 96 | ➜ | 1/A2/122:125,1/A2/226:227 | NA | NA |
| 97 | ➜ | 1/A2/126:133,1/A2/219:225 | NA | NA |
| 98 | ➜ | 1/A2/142:147,1/A2/162:168 | NA | NA |
| 99 | ➜ | 1/A2/180:182,1/A2/195:197 | NA | NA |
| 100 | ➜ | 1/A2/237:242,1/A2/272:279 | NA | NA |
| 101 | ➜ | 1/A2/242:248,1/A2/268:272 | NA | NA |
| 102 | ➜ | 1/A2/286:288,1/A2/299:304 | NA | NA |
| 103 | ➜ | 1/A2/362:364,1/A2/387:388 | NA | NA |
| 104 | ➜ | 1/A2/366:370,1/A2/384:385 | NA | NA |
| 105 | ➜ | 1/A2/370:372,1/A2/381:384 | NA | NA |
| 106 | ➜ | 1/A2/404:411,1/A2/422:428 | NA | NA |
| 107 | ➜ | 1/A2/439:444,1/A2/467:473 | NA | NA |
| 108 | ➜ | 1/A2/444:450,1/A2/460:467 | NA | NA |
| 109 | ➜ | 1/A2/487:494,1/A2/523:524 | NA | NA |
| 110 | ➜ | 1/A2/498:504,1/A2/511:519 | NA | NA |
| 111 | ➜ | 1/A2/552:558,1/A2/857:858 | NA | NA |
| 112 | ➜ | 1/A2/560:568,1/A2/739:747 | NA | NA |
| 113 | ➜ | 1/A2/573:580,1/A2/626:632 | NA | NA |
| 114 | ➜ | 1/A2/580:582,1/A2/622:626 | NA | NA |
| 115 | ➜ | 1/A2/588:595,1/A2/611:616 | NA | NA |
| 116 | ➜ | 1/A2/637:638,1/A2/734:737 | NA | NA |
| 117 | ➜ | 1/A2/666:671,1/A2/682:690 | NA | NA |
| 118 | ➜ | 1/A2/757:761,1/A2/787:788 | NA | NA |
| 119 | ➜ | 1/A2/762:767,1/A2/781:786 | NA | NA |
| 120 | ➜ | 1/A2/864:871,1/A2/882:887 | NA | NA |
| 121 | ➜ | 1/A2/899:904,1/A2/1372:1377 | NA | NA |
| 122 | ➜ | 1/A2/910:912,1/A2/1362:1366 | NA | NA |
| 123 | ➜ | 1/A2/922:924,1/A2/1215:1218 | NA | NA |
| 124 | ➜ | 1/A2/1033:1039,1/A2/1184:1188 | NA | NA |
| 125 | ➜ | 1/A2/1039:1040,1/A2/1180:1184 | NA | NA |
| 126 | ➜ | 1/A2/1042:1043,1/A2/1176:1178 | NA | NA |
| 127 | ➜ | 1/A2/1043:1045,1/A2/1174:1176 | NA | NA |
| 128 | ➜ | 1/A2/1236:1239,1/A2/1258:1263 | NA | NA |
| 129 | ➜ | 1/A2/1240:1243,1/A2/1254:1257 | NA | NA |
| 130 | ➜ | 1/A2/1284:1289,1/A2/1310:1315 | NA | NA |
| 131 | ➜ | 1/A2/1381:1383,1/A2/1478:1481 | NA | NA |
| 132 | ➜ | 1/A2/1383:1386,1/A2/1474:1478 | NA | NA |
| 133 | ➜ | 1/A2/1387:1389,1/A2/1471:1473 | NA | NA |
| 134 | ➜ | 1/A2/1389:1393,1/A2/1466:1471 | NA | NA |
| 135 | ➜ | 1/A2/1394:1398,1/A2/1461:1465 | NA | NA |
| 136 | ➜ | 1/A2/1398:1405,1/A2/1454:1461 | NA | NA |
| 137 | ➜ | 1/A2/1413:1417,1/A2/1443:1446 | NA | NA |
| 138 | ➜ | 1/A2/1417:1419,1/A2/1441:1443 | NA | NA |
| 139 | ➜ | 1/A2/1421:1427,1/A2/1436:1439 | NA | NA |
| 140 | ➜ | 1/B1/19:20,1/B1/67:69 | NA | NA |
| 141 | ➜ | 1/B1/25:30,1/B1/58:62 | NA | NA |
| 142 | ➜ | 1/B1/32:34,1/B1/52:56 | NA | NA |
| 143 | ➜ | 1/B1/36:40,1/B1/46:50 | NA | NA |
| 144 | ➜ | 1/B1/73:81,1/B1/100:108 | NA | NA |
Problematic loops
No problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/A1/30:31,1/A1/502:509,1/A1/536:537 | NA | NA |
| 2 | ➜ | 1/A1/54:56,1/A1/69:75,1/A1/108:113 | NA | NA |
| 3 | ➜ | 1/A1/259:263,1/A1/283:290,1/A1/397:398 | NA | NA |
| 4 | ➜ | 1/A1/732:738,1/A1/822:824,1/A1/840:843 | NA | NA |
| 5 | ➜ | 1/A1/747:749,1/A1/781:785,1/A1/809:812 | NA | NA |
| 6 | ➜ | 1/A1/1346:1351,1/A1/1673:1675,1/A1/1688:1691 | NA | NA |
| 7 | ➜ | 1/A1/1354:1357,1/A1/1653:1659,1/A1/1668:1670 | NA | NA |
| 8 | ➜ | 1/A1/2115:2117,1/A1/2220:2224,1/A1/2237:2242 | NA | NA |
| 9 | ➜ | 1/A1/2309:2311,1/A1/2335:2337,1/A1/2346:2351 | NA | NA |
| 10 | ➜ | 1/A1/2531:2534,1/A1/2559:2561,1/A1/2575:2581 | NA | NA |
| 11 | ➜ | 1/A1/2804:2806,1/A1/2818:2823,1/A1/2901:2905 | NA | NA |
| 12 | ➜ | 1/A1/2826:2827,1/A1/2843:2848,1/A1/2894:2898 | NA | NA |
| 13 | ➜ | 1/A2/45:47,1/A2/356:362,1/A2/388:391 | NA | NA |
| 14 | ➜ | 1/A2/569:571,1/A2/634:637,1/A2/737:738 | NA | NA |
| 15 | ➜ | 1/A2/809:812,1/A2/834:838,1/A2/845:851 | NA | NA |
| 16 | ➜ | 1/A2/1045:1050,1/A2/1089:1095,1/A2/1168:1174 | NA | NA |
| 17 | ➜ | 1/A2/1055:1056,1/A2/1065:1069,1/A2/1080:1084 | NA | NA |
| 18 | ➜ | 1/A2/1098:1100,1/A2/1137:1143,1/A2/1156:1165 | NA | NA |
| 19 | ➜ | 1/B1/13:18,1/B1/70:71,1/B1/110:112 | NA | NA |
Problematic loops
No problematic loops
Coloring options: