6GZQ Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6GZQ_001 | 1/A1/58:67 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_6GZQ_002 | 1/A1/86:94 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_6GZQ_003 | 1/A1/121:126 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_75407.1 | |
| HL_6GZQ_004 | 1/A1/136:141 | No text annotation Not in a motif group | ||
| HL_6GZQ_005 | 1/A1/155:161 | No text annotation Not in a motif group | ||
| HL_6GZQ_006 | 1/A1/178:198 | No text annotation Not in a motif group | ||
| HL_6GZQ_007 | 1/A1/214:221 | No text annotation Not in a motif group | ||
| HL_6GZQ_008 | 1/A1/236:242 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_6GZQ_009 | 1/A1/270:276 | No text annotation Not in a motif group | geometric HL_5J7L_151 HL_90617.2 | |
| HL_6GZQ_010 | 1/A1/329:338 | No text annotation Not in a motif group | ||
| HL_6GZQ_011 | 1/A1/344:348 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_6GZQ_012 | 1/A1/352:360 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_6GZQ_013 | 1/A1/409:421 | No text annotation Not in a motif group | ||
| HL_6GZQ_014 | 1/A1/438:445 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_96598.1 | |
| HL_6GZQ_015 | 1/A1/490:495 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_6GZQ_016 | 1/A1/515:520 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_6GZQ_017 | 1/A1/570:575 | GNRA Not in a motif group | geometric HL_4ZT0_004 HL_42097.1 | |
| HL_6GZQ_018 | 1/A1/589:602 | No text annotation Not in a motif group | ||
| HL_6GZQ_019 | 1/A1/637:643 | No text annotation Not in a motif group | homologous HL_7A0S_019 HL_32369.1 | |
| HL_6GZQ_020 | 1/A1/656:661 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_6GZQ_021 | 1/A1/668:674 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_6GZQ_022 | 1/A1/761:768 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_6GZQ_023 | 1/A1/793:802 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_6GZQ_024 | 1/A1/828:834 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_6GZQ_025 | 1/A1/875:880 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_6GZQ_026 | 1/A1/929:945 | No text annotation Not in a motif group | ||
| HL_6GZQ_027 | 1/A1/1002:1009 | No text annotation Not in a motif group | geometric HL_7RQB_027 HL_42097.1 | |
| HL_6GZQ_028 | 1/A1/1025:1034 | No text annotation Not in a motif group | geometric HL_4V90_032 HL_14843.1 | |
| HL_6GZQ_029 | 1/A1/1102:1153 | No text annotation Not in a motif group | ||
| HL_6GZQ_030 | 1/A1/1219:1225 | No text annotation Not in a motif group | ||
| HL_6GZQ_031 | 1/A1/1270:1275 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_6GZQ_032 | 1/A1/1329:1337 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_032 HL_89380.2 | |
| HL_6GZQ_033 | 1/A1/1372:1378 | No text annotation Not in a motif group | homologous HL_4WF9_033 HL_46680.1 | |
| HL_6GZQ_034 | 1/A1/1411:1416 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_87030.2 | |
| HL_6GZQ_035 | 1/A1/1437:1446 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_69023.2 | |
| HL_6GZQ_036 | 1/A1/1501:1508 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_32426.1 | |
| HL_6GZQ_037 | 1/A1/1537:1548 | No text annotation Not in a motif group | ||
| HL_6GZQ_038 | 1/A1/1581:1586 | No text annotation Not in a motif group | geometric HL_5TBW_044 HL_09829.1 | |
| HL_6GZQ_039 | 1/A1/1614:1617 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_6GZQ_040 | 1/A1/1660:1667 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_6GZQ_041 | 1/A1/1679:1684 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_6GZQ_042 | 1/A1/1740:1745 | UNCG Not in a motif group | homologous HL_4WF9_040 HL_03562.2 | |
| HL_6GZQ_043 | 1/A1/1767:1773 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_6GZQ_044 | 1/A1/1785:1789 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_6GZQ_045 | 1/A1/1810:1820 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_6GZQ_046 | 1/A1/1839:1844 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_42097.1 | |
| HL_6GZQ_047 | 1/A1/1897:1902 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_6GZQ_048 | 1/A1/1934:1944 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_6GZQ_049 | 1/A1/1973:1981 | No text annotation Not in a motif group | homologous HL_4WF9_046 HL_51824.1 | |
| HL_6GZQ_050 | 1/A1/2051:2060 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_6GZQ_051 | 1/A1/2145:2201 | No text annotation Not in a motif group | ||
| HL_6GZQ_052 | 1/A1/2228:2233 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
| HL_6GZQ_053 | 1/A1/2261:2271 | No text annotation Not in a motif group | geometric HL_4V83_139 HL_53597.2 | |
| HL_6GZQ_054 | 1/A1/2278:2290 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_6GZQ_055 | 1/A1/2316:2328 | No text annotation Not in a motif group | ||
| HL_6GZQ_056 | 1/A1/2338:2345 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_6GZQ_057 | 1/A1/2369:2376 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_6GZQ_058 | 1/A1/2388:2393 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_6GZQ_059 | 1/A1/2418:2427 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_6GZQ_060 | 1/A1/2485:2493 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
| HL_6GZQ_061 | 1/A1/2542:2549 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_6GZQ_062 | 1/A1/2565:2571 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_6GZQ_063 | 1/A1/2608:2613 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_6GZQ_064 | 1/A1/2672:2677 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_6GZQ_065 | 1/A1/2715:2720 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_6GZQ_066 | 1/A1/2759:2775 | No text annotation Not in a motif group | ||
| HL_6GZQ_067 | 1/A1/2806:2818 | No text annotation Not in a motif group | ||
| HL_6GZQ_068 | 1/A1/2831:2839 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_6GZQ_069 | 1/A1/2868:2873 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 | |
| HL_6GZQ_070 | 1/A2/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_6GZQ_071 | 1/A2/67:95 | No text annotation Not in a motif group | ||
| HL_6GZQ_072 | 1/A2/152:157 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_6GZQ_073 | 1/A2/186:191 | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_10278.1 | |
| HL_6GZQ_074 | 1/A2/205:213 | No text annotation Not in a motif group | ||
| HL_6GZQ_075 | 1/A2/254:262 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_6GZQ_076 | 1/A2/291:296 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_6GZQ_077 | 1/A2/315:328 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_6GZQ_078 | 1/A2/337:342 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_6GZQ_079 | 1/A2/374:379 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_6GZQ_080 | 1/A2/414:419 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_6GZQ_081 | 1/A2/452:458 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_6GZQ_082 | 1/A2/505:510 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_6GZQ_083 | 1/A2/600:606 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_6GZQ_084 | 1/A2/672:681 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_6GZQ_085 | 1/A2/709:714 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_6GZQ_086 | 1/A2/769:779 | No text annotation Not in a motif group | homologous HL_6CZR_088 HL_12326.1 | |
| HL_6GZQ_087 | 1/A2/821:825 | No text annotation Not in a motif group | homologous HL_4LFB_018 HL_38927.2 | |
| HL_6GZQ_088 | 1/A2/839:844 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_6GZQ_089 | 1/A2/874:879 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_6GZQ_090 | 1/A2/940:949 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_6GZQ_091 | 1/A2/989:996 | No text annotation Not in a motif group | homologous HL_6CZR_093 NA | |
| HL_6GZQ_092 | 1/A2/1058:1063 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_6GZQ_093 | 1/A2/1071:1078 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_6GZQ_094 | 1/A2/1116:1122 | No text annotation Not in a motif group | ||
| HL_6GZQ_095 | 1/A2/1147:1152 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_6GZQ_096 | 1/A2/1246:1251 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_6GZQ_097 | 1/A2/1292:1307 | No text annotation Not in a motif group | ||
| HL_6GZQ_098 | 1/A2/1336:1349 | No text annotation Not in a motif group | ||
| HL_6GZQ_099 | 1/A2/1429:1434 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
| HL_6GZQ_100 | 1/A2/1492:1497 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_6GZQ_101 | 1/B1/40:46 | No text annotation Not in a motif group | geometric HL_5J7L_203 HL_87939.1 | |
| HL_6GZQ_102 | 1/B1/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6GZQ_001 | 1/A1/24:30, 1/A1/537:543 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7A0S_001 IL_66414.6 | |
| IL_6GZQ_002 | 1/A1/36:37, 1/A1/470:472 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_6GZQ_003 | 1/A1/42:43, 1/A1/463:465 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_6GZQ_004 | 1/A1/80:84, 1/A1/96:103 | Kink-turn Not in a motif group | homologous IL_4WF9_004 IL_45067.2 | |
| IL_6GZQ_005 | 1/A1/173:174, 1/A1/202:204 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_6GZQ_006 | 1/A1/228:235, 1/A1/243:249 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_009 IL_04346.7 | |
| IL_6GZQ_007 | 1/A1/292:294, 1/A1/392:395 | No text annotation Not in a motif group | geometric IL_6DME_003 IL_63450.2 | |
| IL_6GZQ_008 | 1/A1/318:320, 1/A1/368:372 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_6GZQ_009 | 1/A1/509:512, 1/A1/523:536 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.6 | |
| IL_6GZQ_010 | 1/A1/631:635, 1/A1/645:649 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_6GZQ_011 | 1/A1/721:723, 1/A1/855:857 | No text annotation Not in a motif group | geometric IL_5J7L_259 IL_95997.1 | |
| IL_6GZQ_012 | 1/A1/723:727, 1/A1/848:855 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_4WF9_021 IL_17470.6 | |
| IL_6GZQ_013 | 1/A1/746:747, 1/A1/812:814 | Single bulged A Not in a motif group | homologous IL_4WF9_022 IL_37497.2 | |
| IL_6GZQ_014 | 1/A1/751:752, 1/A1/777:779 | Single bulged G Not in a motif group | homologous IL_7RQB_020 IL_00225.2 | |
| IL_6GZQ_015 | 1/A1/752:756, 1/A1/773:777 | Triple sheared Not in a motif group | geometric IL_4WF9_024 IL_56467.8 | |
| IL_6GZQ_016 | 1/A1/787:790, 1/A1/805:807 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_6GZQ_017 | 1/A1/824:826, 1/A1/836:840 | Multiple bulged bases Not in a motif group | homologous IL_4WF9_027 IL_90991.6 | |
| IL_6GZQ_018 | 1/A1/886:887, 1/A1/987:989 | Single stack bend Not in a motif group | homologous IL_5J7L_266 IL_92001.1 | |
| IL_6GZQ_019 | 1/A1/893:895, 1/A1/978:981 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 IL_52767.2 | |
| IL_6GZQ_020 | 1/A1/895:899, 1/A1/975:978 | No text annotation Not in a motif group | geometric IL_7RQB_026 IL_94165.1 | |
| IL_6GZQ_021 | 1/A1/906:911, 1/A1/963:968 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_6GZQ_022 | 1/A1/911:912, 1/A1/961:963 | Minor groove platform Not in a motif group | geometric IL_4V9F_034 IL_42622.2 | |
| IL_6GZQ_023 | 1/A1/912:917, 1/A1/957:961 | No text annotation Not in a motif group | ||
| IL_6GZQ_024 | 1/A1/924:929, 1/A1/945:950 | No text annotation Not in a motif group | ||
| IL_6GZQ_025 | 1/A1/999:1002, 1/A1/1009:1012 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_30621.2 | |
| IL_6GZQ_026 | 1/A1/1042:1044, 1/A1/1207:1208 | Single bulged C Not in a motif group | homologous IL_5J7L_276 IL_61258.12 | |
| IL_6GZQ_027 | 1/A1/1046:1050, 1/A1/1201:1205 | UAA/GAN Not in a motif group | homologous IL_7A0S_033 IL_89002.2 | |
| IL_6GZQ_028 | 1/A1/1052:1059, 1/A1/1198:1199 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4WF9_037 IL_15861.7 | |
| IL_6GZQ_029 | 1/A1/1059:1061, 1/A1/1197:1198 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_6GZQ_030 | 1/A1/1066:1072, 1/A1/1187:1192 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_6GZQ_031 | 1/A1/1072:1078, 1/A1/1172:1187 | No text annotation Not in a motif group | ||
| IL_6GZQ_032 | 1/A1/1079:1082, 1/A1/1169:1171 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_041 IL_82068.2 | |
| IL_6GZQ_033 | 1/A1/1091:1101, 1/A1/1154:1160 | No text annotation Not in a motif group | ||
| IL_6GZQ_034 | 1/A1/1243:1246, 1/A1/1294:1298 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.2 | |
| IL_6GZQ_035 | 1/A1/1249:1253, 1/A1/1288:1291 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_6GZQ_036 | 1/A1/1255:1262, 1/A1/1282:1286 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_6GZQ_037 | 1/A1/1266:1269, 1/A1/1276:1278 | No text annotation Not in a motif group | geometric IL_4WF9_055 IL_95997.1 | |
| IL_6GZQ_038 | 1/A1/1310:1317, 1/A1/2035:2041 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_6GZQ_039 | 1/A1/1358:1361, 1/A1/1651:1652 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_6GZQ_040 | 1/A1/1366:1372, 1/A1/1378:1382 | No text annotation Not in a motif group | ||
| IL_6GZQ_041 | 1/A1/1399:1403, 1/A1/1424:1428 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_6GZQ_042 | 1/A1/1405:1409, 1/A1/1418:1422 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_6GZQ_043 | 1/A1/1463:1469, 1/A1/1626:1635 | No text annotation Not in a motif group | ||
| IL_6GZQ_044 | 1/A1/1481:1483, 1/A1/1606:1609 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_6GZQ_045 | 1/A1/1484:1488, 1/A1/1600:1605 | tSH-tHW-tHS Not in a motif group | geometric IL_2QWY_007 IL_38862.1 | |
| IL_6GZQ_046 | 1/A1/1497:1499, 1/A1/1511:1512 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_6GZQ_047 | 1/A1/1500:1501, 1/A1/1508:1510 | Single bulged A Not in a motif group | geometric IL_7RQB_059 IL_37497.2 | |
| IL_6GZQ_048 | 1/A1/1518:1522, 1/A1/1568:1571 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_6GZQ_049 | 1/A1/1530:1531, 1/A1/1554:1560 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_6GZQ_050 | 1/A1/1574:1580, 1/A1/1587:1595 | No text annotation Not in a motif group | ||
| IL_6GZQ_051 | 1/A1/1700:1705, 1/A1/2028:2030 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_6GZQ_052 | 1/A1/1712:1714, 1/A1/2019:2021 | Isolated tWW turn Not in a motif group | homologous IL_7A0S_060 IL_54997.7 | |
| IL_6GZQ_053 | 1/A1/1715:1723, 1/A1/2014:2018 | No text annotation Not in a motif group | ||
| IL_6GZQ_054 | 1/A1/1735:1740, 1/A1/1745:1751 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_6GZQ_055 | 1/A1/1803:1804, 1/A1/2004:2006 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
| IL_6GZQ_056 | 1/A1/1831:1837, 1/A1/1846:1854 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_6GZQ_057 | 1/A1/1870:1873, 1/A1/1926:1927 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_7RQB_071 IL_88739.1 | |
| IL_6GZQ_058 | 1/A1/1873:1875, 1/A1/1922:1926 | No text annotation Not in a motif group | geometric IL_4WF9_018 IL_51629.2 | |
| IL_6GZQ_059 | 1/A1/1879:1882, 1/A1/1917:1918 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_316 IL_09061.6 | |
| IL_6GZQ_060 | 1/A1/1884:1888, 1/A1/1911:1915 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_6GZQ_061 | 1/A1/1889:1893, 1/A1/1906:1910 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_6GZQ_062 | 1/A1/1957:1958, 1/A1/1988:1991 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_318 IL_59677.2 | |
| IL_6GZQ_063 | 1/A1/1958:1969, 1/A1/1985:1988 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_6GZQ_064 | 1/A1/2074:2076, 1/A1/2631:2632 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_6GZQ_065 | 1/A1/2091:2093, 1/A1/2456:2457 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_6GZQ_066 | 1/A1/2094:2095, 1/A1/2452:2455 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_6GZQ_067 | 1/A1/2105:2107, 1/A1/2250:2253 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_6GZQ_068 | 1/A1/2109:2111, 1/A1/2246:2248 | No text annotation Not in a motif group | homologous IL_7A0S_078 IL_95997.1 | |
| IL_6GZQ_069 | 1/A1/2131:2145, 1/A1/2201:2206 | No text annotation Not in a motif group | ||
| IL_6GZQ_070 | 1/A1/2311:2313, 1/A1/2331:2335 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4WF9_086 IL_38958.7 | |
| IL_6GZQ_071 | 1/A1/2364:2367, 1/A1/2378:2381 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_6GZQ_072 | 1/A1/2415:2417, 1/A1/2428:2429 | Single bulged U Not in a motif group | homologous IL_5J7L_334 IL_83039.13 | |
| IL_6GZQ_073 | 1/A1/2467:2468, 1/A1/2512:2514 | Single stack bend Not in a motif group | homologous IL_7RQB_091 IL_76488.2 | |
| IL_6GZQ_074 | 1/A1/2468:2469, 1/A1/2510:2512 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_27635.1 | |
| IL_6GZQ_075 | 1/A1/2469:2475, 1/A1/2503:2510 | No text annotation Not in a motif group | ||
| IL_6GZQ_076 | 1/A1/2480:2484, 1/A1/2494:2498 | Triple sheared Not in a motif group | homologous IL_7A0S_087 IL_56467.8 | |
| IL_6GZQ_077 | 1/A1/2521:2522, 1/A1/2594:2596 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_6GZQ_078 | 1/A1/2524:2526, 1/A1/2588:2592 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_340 IL_90933.2 | |
| IL_6GZQ_079 | 1/A1/2526:2527, 1/A1/2585:2588 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 IL_71530.2 | |
| IL_6GZQ_080 | 1/A1/2536:2537, 1/A1/2554:2557 | Minor groove platform with intercalation Not in a motif group | homologous IL_7A0S_091 IL_95601.3 | |
| IL_6GZQ_081 | 1/A1/2605:2607, 1/A1/2614:2617 | No text annotation Not in a motif group | homologous IL_7A0S_092 IL_82842.2 | |
| IL_6GZQ_082 | 1/A1/2650:2654, 1/A1/2789:2797 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_6GZQ_083 | 1/A1/2666:2672, 1/A1/2677:2682 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
| IL_6GZQ_084 | 1/A1/2694:2700, 1/A1/2738:2742 | No text annotation Not in a motif group | ||
| IL_6GZQ_085 | 1/A1/2701:2705, 1/A1/2733:2737 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_6GZQ_086 | 1/A1/2709:2710, 1/A1/2725:2729 | Multiple bulged bases Not in a motif group | homologous IL_7A0S_097 IL_71530.2 | |
| IL_6GZQ_087 | 1/A1/2752:2757, 1/A1/2777:2782 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_6GZQ_088 | 1/A1/2850:2851, 1/A1/2890:2892 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_6GZQ_089 | 1/A1/2855:2859, 1/A1/2881:2886 | No text annotation Not in a motif group | ||
| IL_6GZQ_090 | 1/A1/2859:2864, 1/A1/2877:2881 | No text annotation Not in a motif group | geometric IL_7RQB_110 IL_83162.5 | |
| IL_6GZQ_091 | 1/A2/30:32, 1/A2/535:536 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_6GZQ_092 | 1/A2/44:45, 1/A2/391:393 | Single bulged A Not in a motif group | homologous IL_6CZR_114 IL_37497.2 | |
| IL_6GZQ_093 | 1/A2/47:52, 1/A2/354:356 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_6GZQ_094 | 1/A2/54:56, 1/A2/351:352 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_6GZQ_095 | 1/A2/63:66, 1/A2/96:97 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
| IL_6GZQ_096 | 1/A2/122:125, 1/A2/226:227 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_119 IL_16396.2 | |
| IL_6GZQ_097 | 1/A2/126:133, 1/A2/219:225 | No text annotation Not in a motif group | ||
| IL_6GZQ_098 | 1/A2/142:147, 1/A2/162:168 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_6GZQ_099 | 1/A2/180:182, 1/A2/195:197 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_6GZQ_100 | 1/A2/237:242, 1/A2/272:279 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_6GZQ_101 | 1/A2/242:248, 1/A2/268:272 | No text annotation Not in a motif group | ||
| IL_6GZQ_102 | 1/A2/286:288, 1/A2/299:304 | No text annotation Not in a motif group | ||
| IL_6GZQ_103 | 1/A2/362:364, 1/A2/387:388 | Single bulged U Not in a motif group | geometric IL_3D2V_001 IL_83039.13 | |
| IL_6GZQ_104 | 1/A2/366:370, 1/A2/384:385 | C-loop Not in a motif group | homologous IL_4LFB_015 IL_75255.1 | |
| IL_6GZQ_105 | 1/A2/370:372, 1/A2/381:384 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_82068.2 | |
| IL_6GZQ_106 | 1/A2/404:411, 1/A2/422:428 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_6GZQ_107 | 1/A2/439:444, 1/A2/467:473 | No text annotation Not in a motif group | ||
| IL_6GZQ_108 | 1/A2/444:450, 1/A2/460:467 | No text annotation Not in a motif group | homologous IL_6CZR_131 IL_30149.1 | |
| IL_6GZQ_109 | 1/A2/487:494, 1/A2/523:524 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_6GZQ_110 | 1/A2/498:504, 1/A2/511:519 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_6GZQ_111 | 1/A2/552:558, 1/A2/857:858 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_6GZQ_112 | 1/A2/560:568, 1/A2/739:747 | No text annotation Not in a motif group | ||
| IL_6GZQ_113 | 1/A2/573:580, 1/A2/626:632 | No text annotation Not in a motif group | ||
| IL_6GZQ_114 | 1/A2/580:582, 1/A2/622:626 | 8-nt loop receptor Not in a motif group | geometric IL_6CK5_002 IL_93341.1 | |
| IL_6GZQ_115 | 1/A2/588:595, 1/A2/611:616 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_6GZQ_116 | 1/A2/637:638, 1/A2/734:737 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_6GZQ_117 | 1/A2/666:671, 1/A2/682:690 | No text annotation Not in a motif group | homologous IL_6CZR_143 IL_37722.1 | |
| IL_6GZQ_118 | 1/A2/757:761, 1/A2/787:788 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_6GZQ_119 | 1/A2/762:767, 1/A2/781:786 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_3LQX_002 IL_76308.4 | |
| IL_6GZQ_120 | 1/A2/864:871, 1/A2/882:887 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_6GZQ_121 | 1/A2/899:904, 1/A2/1372:1377 | No text annotation Not in a motif group | ||
| IL_6GZQ_122 | 1/A2/910:912, 1/A2/1362:1366 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_6GZQ_123 | 1/A2/922:924, 1/A2/1215:1218 | No text annotation Not in a motif group | geometric IL_4V9F_053 IL_46796.1 | |
| IL_6GZQ_124 | 1/A2/1033:1039, 1/A2/1184:1188 | No text annotation Not in a motif group | ||
| IL_6GZQ_125 | 1/A2/1039:1040, 1/A2/1180:1184 | Minor groove platform Not in a motif group | geometric IL_4LFB_045 IL_93353.1 | |
| IL_6GZQ_126 | 1/A2/1042:1043, 1/A2/1176:1178 | Single bulged U Not in a motif group | homologous IL_6CZR_156 IL_83039.13 | |
| IL_6GZQ_127 | 1/A2/1043:1045, 1/A2/1174:1176 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_6GZQ_128 | 1/A2/1236:1239, 1/A2/1258:1263 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_6GZQ_129 | 1/A2/1240:1243, 1/A2/1254:1257 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_6GZQ_130 | 1/A2/1284:1289, 1/A2/1310:1315 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_6GZQ_131 | 1/A2/1381:1383, 1/A2/1478:1481 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
| IL_6GZQ_132 | 1/A2/1383:1386, 1/A2/1474:1478 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6GZQ_133 | 1/A2/1387:1389, 1/A2/1471:1473 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_6GZQ_134 | 1/A2/1389:1393, 1/A2/1466:1471 | No text annotation Not in a motif group | ||
| IL_6GZQ_135 | 1/A2/1394:1398, 1/A2/1461:1465 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_6GZQ_136 | 1/A2/1398:1405, 1/A2/1454:1461 | No text annotation Not in a motif group | ||
| IL_6GZQ_137 | 1/A2/1413:1417, 1/A2/1443:1446 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
| IL_6GZQ_138 | 1/A2/1417:1419, 1/A2/1441:1443 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 | |
| IL_6GZQ_139 | 1/A2/1421:1427, 1/A2/1436:1439 | No text annotation Not in a motif group | ||
| IL_6GZQ_140 | 1/B1/19:20, 1/B1/67:69 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_37497.2 | |
| IL_6GZQ_141 | 1/B1/25:30, 1/B1/58:62 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_6GZQ_142 | 1/B1/32:34, 1/B1/52:56 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_6GZQ_143 | 1/B1/36:40, 1/B1/46:50 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_6GZQ_144 | 1/B1/73:81, 1/B1/100:108 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6GZQ_001 | 1/A1/30:31, 1/A1/502:509, 1/A1/536:537 | No text annotation Not in a motif group | ||
| J3_6GZQ_002 | 1/A1/54:56, 1/A1/69:75, 1/A1/108:113 | No text annotation Not in a motif group | ||
| J3_6GZQ_003 | 1/A1/259:263, 1/A1/283:290, 1/A1/397:398 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_6GZQ_004 | 1/A1/732:738, 1/A1/822:824, 1/A1/840:843 | No text annotation Not in a motif group | ||
| J3_6GZQ_005 | 1/A1/747:749, 1/A1/781:785, 1/A1/809:812 | No text annotation Not in a motif group | ||
| J3_6GZQ_006 | 1/A1/1346:1351, 1/A1/1673:1675, 1/A1/1688:1691 | No text annotation Not in a motif group | homologous J3_7A0S_006 NA | |
| J3_6GZQ_007 | 1/A1/1354:1357, 1/A1/1653:1659, 1/A1/1668:1670 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_6GZQ_008 | 1/A1/2115:2117, 1/A1/2220:2224, 1/A1/2237:2242 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_6GZQ_009 | 1/A1/2309:2311, 1/A1/2335:2337, 1/A1/2346:2351 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_6GZQ_010 | 1/A1/2531:2534, 1/A1/2559:2561, 1/A1/2575:2581 | No text annotation Not in a motif group | ||
| J3_6GZQ_011 | 1/A1/2804:2806, 1/A1/2818:2823, 1/A1/2901:2905 | No text annotation Not in a motif group | ||
| J3_6GZQ_012 | 1/A1/2826:2827, 1/A1/2843:2848, 1/A1/2894:2898 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA | |
| J3_6GZQ_013 | 1/A2/45:47, 1/A2/356:362, 1/A2/388:391 | No text annotation Not in a motif group | ||
| J3_6GZQ_014 | 1/A2/569:571, 1/A2/634:637, 1/A2/737:738 | No text annotation Not in a motif group | ||
| J3_6GZQ_015 | 1/A2/809:812, 1/A2/834:838, 1/A2/845:851 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_6GZQ_016 | 1/A2/1045:1050, 1/A2/1089:1095, 1/A2/1168:1174 | No text annotation Not in a motif group | ||
| J3_6GZQ_017 | 1/A2/1055:1056, 1/A2/1065:1069, 1/A2/1080:1084 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_6GZQ_018 | 1/A2/1098:1100, 1/A2/1137:1143, 1/A2/1156:1165 | No text annotation Not in a motif group | ||
| J3_6GZQ_019 | 1/B1/13:18, 1/B1/70:71, 1/B1/110:112 | No text annotation Not in a motif group | homologous J3_7RQB_015 NA |
Problematic loops
No problematic loops
Coloring options: