4WQU Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4WQU_001 | 1/AA/58:67 | No text annotation Not in a motif group | homologous HL_7RQB_001 NA | |
| HL_4WQU_002 | 1/AA/86:94 | No text annotation Not in a motif group | homologous HL_7RQB_002 NA | |
| HL_4WQU_003 | 1/AA/121:126 | No text annotation Not in a motif group | homologous HL_7RQB_003 NA | |
| HL_4WQU_004 | 1/AA/136:141 | No text annotation Not in a motif group | homologous HL_7RQB_004 NA | |
| HL_4WQU_005 | 1/AA/183:190 | No text annotation Not in a motif group | geometric HL_7RQB_006 NA | |
| HL_4WQU_006 | 1/AA/214:219 | No text annotation Not in a motif group | homologous HL_7RQB_007 NA | |
| HL_4WQU_007 | 1/AA/235:241 | No text annotation Not in a motif group | homologous HL_7RQB_008 NA | |
| HL_4WQU_008 | 1/AA/269:275 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.3 | |
| HL_4WQU_009 | 1/AA/329:336 | No text annotation Not in a motif group | homologous HL_7RQB_010 NA | |
| HL_4WQU_010 | 1/AA/343:347 | No text annotation Not in a motif group | homologous HL_7RQB_011 NA | |
| HL_4WQU_011 | 1/AA/351:359 | No text annotation Not in a motif group | homologous HL_7RQB_012 NA | |
| HL_4WQU_012 | 1/AA/409:419 | No text annotation Not in a motif group | homologous HL_7RQB_013 NA | |
| HL_4WQU_013 | 1/AA/437:444 | No text annotation Not in a motif group | homologous HL_7RQB_014 NA | |
| HL_4WQU_014 | 1/AA/488:493 | No text annotation Not in a motif group | homologous HL_7RQB_015 NA | |
| HL_4WQU_015 | 1/AA/513:518 | No text annotation Not in a motif group | homologous HL_7RQB_016 NA | |
| HL_4WQU_017 | 1/AA/589:598 | No text annotation Not in a motif group | homologous HL_7RQB_018 NA | |
| HL_4WQU_018 | 1/AA/635:641 | No text annotation Not in a motif group | homologous HL_7RQB_019 NA | |
| HL_4WQU_019 | 1/AA/654:659 | No text annotation Not in a motif group | homologous HL_7RQB_020 NA | |
| HL_4WQU_020 | 1/AA/666:672 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_85603.1 | |
| HL_4WQU_021 | 1/AA/759:766 | No text annotation Not in a motif group | homologous HL_7RQB_022 NA | |
| HL_4WQU_022 | 1/AA/791:800 | No text annotation Not in a motif group | homologous HL_7RQB_023 NA | |
| HL_4WQU_023 | 1/AA/826:832 | No text annotation Not in a motif group | homologous HL_7RQB_024 NA | |
| HL_4WQU_024 | 1/AA/873:878 | No text annotation Not in a motif group | homologous HL_7RQB_025 NA | |
| HL_4WQU_025 | 1/AA/931:938 | No text annotation Not in a motif group | geometric HL_7RQB_026 NA | |
| HL_4WQU_026 | 1/AA/1000:1007 | No text annotation Not in a motif group | homologous HL_7RQB_027 NA | |
| HL_4WQU_027 | 1/AA/1024:1031 | No text annotation Not in a motif group | homologous HL_7RQB_028 NA | |
| HL_4WQU_028 | 1/AA/1110:1120 | No text annotation Not in a motif group | homologous HL_6PRV_001 HL_07145.2 | |
| HL_4WQU_029 | 1/AA/1138:1145 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.3 | |
| HL_4WQU_030 | 1/AA/1217:1223 | No text annotation Not in a motif group | homologous HL_7RQB_031 NA | |
| HL_4WQU_031 | 1/AA/1268:1273 | No text annotation Not in a motif group | homologous HL_7RQB_032 NA | |
| HL_4WQU_032 | 1/AA/1327:1335 | No text annotation Not in a motif group | homologous HL_7RQB_033 NA | |
| HL_4WQU_033 | 1/AA/1370:1376 | No text annotation Not in a motif group | homologous HL_7RQB_034 NA | |
| HL_4WQU_034 | 1/AA/1409:1414 | No text annotation Not in a motif group | homologous HL_7RQB_035 NA | |
| HL_4WQU_035 | 1/AA/1435:1444 | No text annotation Not in a motif group | homologous HL_7RQB_036 NA | |
| HL_4WQU_036 | 1/AA/1499:1506 | No text annotation Not in a motif group | homologous HL_7RQB_037 NA | |
| HL_4WQU_037 | 1/AA/1538:1544 | No text annotation Not in a motif group | homologous HL_7RQB_038 NA | |
| HL_4WQU_038 | 1/AA/1612:1615 | No text annotation Not in a motif group | homologous HL_7RQB_039 NA | |
| HL_4WQU_039 | 1/AA/1658:1665 | No text annotation Not in a motif group | homologous HL_7RQB_040 NA | |
| HL_4WQU_040 | 1/AA/1677:1682 | No text annotation Not in a motif group | homologous HL_7RQB_041 NA | |
| HL_4WQU_041 | 1/AA/1738:1743 | UNCG Not in a motif group | homologous HL_5J7L_175 HL_29960.1 | |
| HL_4WQU_042 | 1/AA/1765:1771 | No text annotation Not in a motif group | homologous HL_7RQB_043 NA | |
| HL_4WQU_043 | 1/AA/1783:1787 | No text annotation Not in a motif group | homologous HL_7RQB_044 NA | |
| HL_4WQU_044 | 1/AA/1808:1818 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.6 | |
| HL_4WQU_045 | 1/AA/1837:1842 | No text annotation Not in a motif group | homologous HL_7RQB_046 NA | |
| HL_4WQU_046 | 1/AA/1895:1900 | No text annotation Not in a motif group | homologous HL_7RQB_047 NA | |
| HL_4WQU_047 | 1/AA/1932:1942 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4WQU_048 | 1/AA/1971:1979 | No text annotation Not in a motif group | homologous HL_7RQB_049 NA | |
| HL_4WQU_049 | 1/AA/2049:2058 | No text annotation Not in a motif group | homologous HL_7RQB_050 NA | |
| HL_4WQU_051 | 1/AA/2226:2231 | No text annotation Not in a motif group | homologous HL_7RQB_052 NA | |
| HL_4WQU_052 | 1/AA/2260:2268 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4WQU_053 | 1/AA/2276:2288 | No text annotation Not in a motif group | homologous HL_7RQB_054 NA | |
| HL_4WQU_054 | 1/AA/2315:2325 | No text annotation Not in a motif group | homologous HL_7RQB_055 NA | |
| HL_4WQU_055 | 1/AA/2336:2343 | No text annotation Not in a motif group | homologous HL_7RQB_056 NA | |
| HL_4WQU_056 | 1/AA/2367:2374 | No text annotation Not in a motif group | homologous HL_7RQB_057 NA | |
| HL_4WQU_057 | 1/AA/2386:2391 | No text annotation Not in a motif group | homologous HL_7RQB_058 NA | |
| HL_4WQU_058 | 1/AA/2416:2425 | No text annotation Not in a motif group | homologous HL_7RQB_059 NA | |
| HL_4WQU_059 | 1/AA/2483:2491 | No text annotation Not in a motif group | homologous HL_7RQB_060 NA | |
| HL_4WQU_060 | 1/AA/2540:2547 | No text annotation Not in a motif group | homologous HL_7RQB_061 NA | |
| HL_4WQU_061 | 1/AA/2563:2569 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_22584.1 | |
| HL_4WQU_062 | 1/AA/2606:2611 | No text annotation Not in a motif group | homologous HL_7RQB_063 NA | |
| HL_4WQU_063 | 1/AA/2670:2675 | No text annotation Not in a motif group | homologous HL_7RQB_064 NA | |
| HL_4WQU_064 | 1/AA/2713:2718 | No text annotation Not in a motif group | homologous HL_7RQB_065 NA | |
| HL_4WQU_065 | 1/AA/2758:2772 | No text annotation Not in a motif group | homologous HL_7RQB_066 NA | |
| HL_4WQU_067 | 1/AA/2829:2837 | No text annotation Not in a motif group | homologous HL_7RQB_068 NA | |
| HL_4WQU_068 | 1/AA/2866:2871 | No text annotation Not in a motif group | homologous HL_7RQB_069 NA | |
| HL_4WQU_069 | 1/AB/38:44 | No text annotation Not in a motif group | geometric HL_7RQB_070 NA | |
| HL_4WQU_070 | 1/AB/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 NA | |
| HL_4WQU_071 | 1/BA/11:23 | No text annotation Not in a motif group | ||
| HL_4WQU_073 | 1/BA/156:165 | No text annotation Not in a motif group | ||
| HL_4WQU_074 | 1/BA/189C:189H | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_61849.1 | |
| HL_4WQU_075 | 1/BA/200:217 | No text annotation Not in a motif group | homologous HL_6CZR_076 HL_34168.3 | |
| HL_4WQU_076 | 1/BA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.3 | |
| HL_4WQU_077 | 1/BA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_85603.1 | |
| HL_4WQU_078 | 1/BA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4WQU_080 | 1/BA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_85603.1 | |
| HL_4WQU_081 | 1/BA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_29960.1 | |
| HL_4WQU_082 | 1/BA/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_85603.1 | |
| HL_4WQU_083 | 1/BA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_70546.2 | |
| HL_4WQU_084 | 1/BA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.3 | |
| HL_4WQU_085 | 1/BA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.2 | |
| HL_4WQU_086 | 1/BA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.3 | |
| HL_4WQU_087 | 1/BA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.2 | |
| HL_4WQU_088 | 1/BA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_69858.1 | |
| HL_4WQU_089 | 1/BA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_85603.1 | |
| HL_4WQU_090 | 1/BA/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_85603.1 | |
| HL_4WQU_091 | 1/BA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4WQU_092 | 1/BA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_85603.1 | |
| HL_4WQU_094 | 1/BA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_85603.1 | |
| HL_4WQU_095 | 1/BA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4WQU_096 | 1/BA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4WQU_097 | 1/BA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_85603.1 | |
| HL_4WQU_098 | 1/BA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_85603.1 | |
| HL_4WQU_099 | 1/BA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_41998.2 | |
| HL_4WQU_100 | 1/BA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_4WQU_101 | 1/BA/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_4WQU_102 | 1/BA/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_4WQU_103 | 1/BW/13:22 | No text annotation Not in a motif group | homologous HL_6PMO_003 NA | |
| HL_4WQU_104 | 1/BW/30:40 | No text annotation Not in a motif group | homologous HL_5IB8_208 NA | |
| HL_4WQU_105 | 1/BW/53:61 | No text annotation Not in a motif group | homologous HL_1IL2_003 NA | |
| HL_4WQU_107 | 1/BY/30:40 | No text annotation Not in a motif group | homologous HL_5EL4_222 NA | |
| HL_4WQU_108 | 1/BY/53:61 | No text annotation Not in a motif group | homologous HL_1FIR_003 NA | |
| HL_4WQU_109 | 1/CA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 NA | |
| HL_4WQU_110 | 1/CA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 NA | |
| HL_4WQU_111 | 1/CA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 NA | |
| HL_4WQU_112 | 1/CA/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 NA | |
| HL_4WQU_114 | 1/CA/194:201 | No text annotation Not in a motif group | geometric HL_7RQB_006 NA | |
| HL_4WQU_115 | 1/CA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 NA | |
| HL_4WQU_116 | 1/CA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 NA | |
| HL_4WQU_117 | 1/CA/271I:271O | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.3 | |
| HL_4WQU_118 | 1/CA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 NA | |
| HL_4WQU_119 | 1/CA/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_70546.2 | |
| HL_4WQU_120 | 1/CA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 NA | |
| HL_4WQU_121 | 1/CA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 NA | |
| HL_4WQU_122 | 1/CA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 NA | |
| HL_4WQU_123 | 1/CA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 NA | |
| HL_4WQU_124 | 1/CA/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_85603.1 | |
| HL_4WQU_126 | 1/CA/566:575 | No text annotation Not in a motif group | geometric HL_7RQB_018 NA | |
| HL_4WQU_127 | 1/CA/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 NA | |
| HL_4WQU_128 | 1/CA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 NA | |
| HL_4WQU_129 | 1/CA/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 NA | |
| HL_4WQU_130 | 1/CA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 NA | |
| HL_4WQU_131 | 1/CA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 NA | |
| HL_4WQU_132 | 1/CA/779:785 | No text annotation Not in a motif group | homologous HL_7RQB_024 NA | |
| HL_4WQU_133 | 1/CA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 NA | |
| HL_4WQU_134 | 1/CA/884:892 | No text annotation Not in a motif group | ||
| HL_4WQU_135 | 1/CA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 NA | |
| HL_4WQU_136 | 1/CA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 NA | |
| HL_4WQU_137 | 1/CA/1064:1074 | No text annotation Not in a motif group | geometric HL_5J7L_161 HL_07145.2 | |
| HL_4WQU_138 | 1/CA/1092:1099 | No text annotation Not in a motif group | homologous HL_6PRV_002 HL_84085.3 | |
| HL_4WQU_140 | 1/CA/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 NA | |
| HL_4WQU_141 | 1/CA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 NA | |
| HL_4WQU_142 | 1/CA/1324:1330 | No text annotation Not in a motif group | homologous HL_7A0S_033 HL_46680.2 | |
| HL_4WQU_143 | 1/CA/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 NA | |
| HL_4WQU_144 | 1/CA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 NA | |
| HL_4WQU_145 | 1/CA/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 NA | |
| HL_4WQU_146 | 1/CA/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 NA | |
| HL_4WQU_148 | 1/CA/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 NA | |
| HL_4WQU_149 | 1/CA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 NA | |
| HL_4WQU_150 | 1/CA/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 NA | |
| HL_4WQU_151 | 1/CA/1691:1696 | UNCG Not in a motif group | geometric HL_5J7L_175 HL_29960.1 | |
| HL_4WQU_152 | 1/CA/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 NA | |
| HL_4WQU_153 | 1/CA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 NA | |
| HL_4WQU_154 | 1/CA/1777:1787 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.6 | |
| HL_4WQU_155 | 1/CA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 NA | |
| HL_4WQU_156 | 1/CA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 NA | |
| HL_4WQU_157 | 1/CA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4WQU_158 | 1/CA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 NA | |
| HL_4WQU_159 | 1/CA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 NA | |
| HL_4WQU_161 | 1/CA/2205:2219 | No text annotation Not in a motif group | homologous HL_7RQB_052 NA | |
| HL_4WQU_162 | 1/CA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4WQU_163 | 1/CA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 NA | |
| HL_4WQU_164 | 1/CA/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 NA | |
| HL_4WQU_165 | 1/CA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 NA | |
| HL_4WQU_166 | 1/CA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 NA | |
| HL_4WQU_167 | 1/CA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 NA | |
| HL_4WQU_168 | 1/CA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 NA | |
| HL_4WQU_169 | 1/CA/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 NA | |
| HL_4WQU_170 | 1/CA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 NA | |
| HL_4WQU_171 | 1/CA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_22584.1 | |
| HL_4WQU_172 | 1/CA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 NA | |
| HL_4WQU_173 | 1/CA/2658:2663 | No text annotation Not in a motif group | homologous HL_7RQB_064 NA | |
| HL_4WQU_174 | 1/CA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 NA | |
| HL_4WQU_175 | 1/CA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 NA | |
| HL_4WQU_177 | 1/CA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 NA | |
| HL_4WQU_178 | 1/CA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 NA | |
| HL_4WQU_179 | 1/CB/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 NA | |
| HL_4WQU_180 | 1/CB/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 NA | |
| HL_4WQU_181 | 1/DA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_4WQU_183 | 1/DA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_85603.1 | |
| HL_4WQU_184 | 1/DA/189C:189H | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_61849.1 | |
| HL_4WQU_185 | 1/DA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_91104.2 | |
| HL_4WQU_186 | 1/DA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.3 | |
| HL_4WQU_187 | 1/DA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_85603.1 | |
| HL_4WQU_188 | 1/DA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4WQU_189 | 1/DA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_29960.1 | |
| HL_4WQU_190 | 1/DA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_85603.1 | |
| HL_4WQU_191 | 1/DA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_29960.1 | |
| HL_4WQU_192 | 1/DA/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_85603.1 | |
| HL_4WQU_193 | 1/DA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_70546.2 | |
| HL_4WQU_194 | 1/DA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.3 | |
| HL_4WQU_195 | 1/DA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.2 | |
| HL_4WQU_196 | 1/DA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.3 | |
| HL_4WQU_197 | 1/DA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.2 | |
| HL_4WQU_198 | 1/DA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_69858.1 | |
| HL_4WQU_199 | 1/DA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_85603.1 | |
| HL_4WQU_200 | 1/DA/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_85603.1 | |
| HL_4WQU_201 | 1/DA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4WQU_202 | 1/DA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_85603.1 | |
| HL_4WQU_204 | 1/DA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_85603.1 | |
| HL_4WQU_205 | 1/DA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4WQU_206 | 1/DA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4WQU_207 | 1/DA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_85603.1 | |
| HL_4WQU_208 | 1/DA/1265:1270 | No text annotation Not in a motif group | homologous HL_6CZR_099 NA | |
| HL_4WQU_209 | 1/DA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_41998.2 | |
| HL_4WQU_210 | 1/DA/1355:1367 | No text annotation Not in a motif group | ||
| HL_4WQU_211 | 1/DA/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_4WQU_212 | 1/DA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4WQU_213 | 1/DW/13:22 | No text annotation Not in a motif group | homologous HL_6PMO_003 NA | |
| HL_4WQU_214 | 1/DW/30:40 | No text annotation Not in a motif group | homologous HL_1B23_002 NA | |
| HL_4WQU_215 | 1/DW/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
| HL_4WQU_217 | 1/DY/30:40 | No text annotation Not in a motif group | homologous HL_4WQ1_224 NA | |
| HL_4WQU_218 | 1/DY/53:61 | No text annotation Not in a motif group | homologous HL_1QF6_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4WQU_016 | No text annotation | ||
| HL_4WQU_050 | UNCG | ||
| HL_4WQU_066 | No text annotation | ||
| HL_4WQU_072 | No text annotation | ||
| HL_4WQU_079 | No text annotation | ||
| HL_4WQU_093 | No text annotation | ||
| HL_4WQU_106 | No text annotation | ||
| HL_4WQU_113 | No text annotation | ||
| HL_4WQU_125 | No text annotation | ||
| HL_4WQU_139 | No text annotation | ||
| HL_4WQU_147 | No text annotation | ||
| HL_4WQU_160 | UNCG | ||
| HL_4WQU_176 | No text annotation | ||
| HL_4WQU_182 | No text annotation | ||
| HL_4WQU_203 | No text annotation | ||
| HL_4WQU_216 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4WQU_001 | 1/AA/24:30, 1/AA/535:541 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 NA | |
| IL_4WQU_002 | 1/AA/36:37, 1/AA/468:470 | Single bulged A Not in a motif group | homologous IL_7RQB_002 NA | |
| IL_4WQU_003 | 1/AA/42:43, 1/AA/461:463 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 NA | |
| IL_4WQU_004 | 1/AA/80:84, 1/AA/96:103 | Kink-turn Not in a motif group | homologous IL_7RQB_004 NA | |
| IL_4WQU_005 | 1/AA/172:173, 1/AA/201:203 | Single stack bend Not in a motif group | homologous IL_7RQB_005 NA | |
| IL_4WQU_006 | 1/AA/177:183, 1/AA/190:197 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 NA | |
| IL_4WQU_007 | 1/AA/228:234, 1/AA/242:247 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 NA | |
| IL_4WQU_008 | 1/AA/291:292, 1/AA/392:394 | Major groove platform Not in a motif group | homologous IL_7RQB_009 NA | |
| IL_4WQU_010 | 1/AA/304:308, 1/AA/381:384 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 NA | |
| IL_4WQU_011 | 1/AA/312:314, 1/AA/374:377 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 NA | |
| IL_4WQU_012 | 1/AA/317:319, 1/AA/367:371 | No text annotation Not in a motif group | homologous IL_7RQB_013 NA | |
| IL_4WQU_013 | 1/AA/507:510, 1/AA/521:534 | No text annotation Not in a motif group | homologous IL_7RQB_014 NA | |
| IL_4WQU_014 | 1/AA/587:589, 1/AA/598:600 | No text annotation Not in a motif group | geometric IL_5J7L_257 IL_86319.3 | |
| IL_4WQU_015 | 1/AA/629:633, 1/AA/643:647 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 NA | |
| IL_4WQU_017 | 1/AA/719:721, 1/AA/853:855 | No text annotation Not in a motif group | geometric IL_7RQB_017 NA | |
| IL_4WQU_018 | 1/AA/721:725, 1/AA/846:853 | No text annotation Not in a motif group | homologous IL_7RQB_018 NA | |
| IL_4WQU_019 | 1/AA/744:745, 1/AA/810:812 | Single bulged A Not in a motif group | geometric IL_7RQB_019 NA | |
| IL_4WQU_020 | 1/AA/749:750, 1/AA/775:777 | Single bulged G Not in a motif group | homologous IL_7RQB_020 NA | |
| IL_4WQU_021 | 1/AA/750:754, 1/AA/771:775 | Triple sheared Not in a motif group | geometric IL_7RQB_021 NA | |
| IL_4WQU_022 | 1/AA/785:788, 1/AA/803:805 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 NA | |
| IL_4WQU_023 | 1/AA/822:824, 1/AA/834:838 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 NA | |
| IL_4WQU_024 | 1/AA/884:885, 1/AA/985:987 | Single stack bend Not in a motif group | homologous IL_7RQB_024 NA | |
| IL_4WQU_025 | 1/AA/891:893, 1/AA/976:979 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 NA | |
| IL_4WQU_026 | 1/AA/893:897, 1/AA/973:976 | No text annotation Not in a motif group | geometric IL_7RQB_026 NA | |
| IL_4WQU_027 | 1/AA/904:909, 1/AA/961:966 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7A0S_027 IL_81631.1 | |
| IL_4WQU_028 | 1/AA/909:910, 1/AA/959:961 | Minor groove platform Not in a motif group | geometric IL_7RQB_028 NA | |
| IL_4WQU_029 | 1/AA/911:915, 1/AA/955:958 | C-loop Not in a motif group | homologous IL_7RQB_029 NA | |
| IL_4WQU_030 | 1/AA/917:919, 1/AA/951:953 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 NA | |
| IL_4WQU_031 | 1/AA/922:924, 1/AA/945:948 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 NA | |
| IL_4WQU_032 | 1/AA/924:926, 1/AA/944:945 | Minor groove platform Not in a motif group | homologous IL_7RQB_032 NA | |
| IL_4WQU_033 | 1/AA/927:929, 1/AA/940:943 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_43275.2 | |
| IL_4WQU_035 | 1/AA/997:999, 1/AA/1008:1010 | No text annotation Not in a motif group | homologous IL_7RQB_034 NA | |
| IL_4WQU_036 | 1/AA/1040:1042, 1/AA/1205:1206 | Single bulged C Not in a motif group | homologous IL_7RQB_035 NA | |
| IL_4WQU_037 | 1/AA/1044:1048, 1/AA/1199:1203 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 NA | |
| IL_4WQU_038 | 1/AA/1050:1057, 1/AA/1196:1197 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 NA | |
| IL_4WQU_039 | 1/AA/1057:1059, 1/AA/1195:1196 | Single bulged U Not in a motif group | homologous IL_7RQB_038 NA | |
| IL_4WQU_040 | 1/AA/1064:1070, 1/AA/1185:1190 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.4 | |
| IL_4WQU_041 | 1/AA/1070:1076, 1/AA/1170:1185 | No text annotation Not in a motif group | geometric IL_7RQB_040 NA | |
| IL_4WQU_042 | 1/AA/1077:1080, 1/AA/1167:1169 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 NA | |
| IL_4WQU_043 | 1/AA/1089:1098, 1/AA/1153:1158 | No text annotation Not in a motif group | ||
| IL_4WQU_045 | 1/AA/1105:1110, 1/AA/1120:1125 | No text annotation Not in a motif group | ||
| IL_4WQU_046 | 1/AA/1133:1137, 1/AA/1146:1148 | No text annotation Not in a motif group | homologous IL_7RQB_044 NA | |
| IL_4WQU_047 | 1/AA/1241:1243, 1/AA/1293:1296 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 NA | |
| IL_4WQU_048 | 1/AA/1247:1251, 1/AA/1286:1289 | No text annotation Not in a motif group | homologous IL_7RQB_046 NA | |
| IL_4WQU_049 | 1/AA/1253:1260, 1/AA/1280:1284 | Kink-turn Not in a motif group | homologous IL_7RQB_047 NA | |
| IL_4WQU_050 | 1/AA/1264:1266, 1/AA/1275:1276 | Single bulged A Not in a motif group | homologous IL_7RQB_048 NA | |
| IL_4WQU_051 | 1/AA/1308:1315, 1/AA/2033:2039 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 NA | |
| IL_4WQU_052 | 1/AA/1356:1359, 1/AA/1649:1650 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 NA | |
| IL_4WQU_053 | 1/AA/1365:1369, 1/AA/1377:1379 | C-loop Not in a motif group | homologous IL_7RQB_051 NA | |
| IL_4WQU_054 | 1/AA/1397:1401, 1/AA/1422:1426 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 NA | |
| IL_4WQU_055 | 1/AA/1403:1407, 1/AA/1416:1420 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 NA | |
| IL_4WQU_056 | 1/AA/1461:1462, 1/AA/1629:1633 | No text annotation Not in a motif group | homologous IL_7RQB_054 NA | |
| IL_4WQU_057 | 1/AA/1463:1467, 1/AA/1624:1628 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 NA | |
| IL_4WQU_058 | 1/AA/1479:1481, 1/AA/1604:1607 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 NA | |
| IL_4WQU_059 | 1/AA/1483:1486, 1/AA/1598:1602 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 NA | |
| IL_4WQU_060 | 1/AA/1495:1497, 1/AA/1509:1510 | Single stack bend Not in a motif group | homologous IL_7RQB_058 NA | |
| IL_4WQU_061 | 1/AA/1498:1499, 1/AA/1506:1508 | Single bulged A Not in a motif group | geometric IL_7RQB_059 NA | |
| IL_4WQU_062 | 1/AA/1516:1520, 1/AA/1566:1569 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 NA | |
| IL_4WQU_063 | 1/AA/1528:1529, 1/AA/1552:1558 | No text annotation Not in a motif group | homologous IL_7RQB_061 NA | |
| IL_4WQU_064 | 1/AA/1535:1537, 1/AA/1545:1546 | Single bulged A Not in a motif group | homologous IL_7RQB_062 NA | |
| IL_4WQU_065 | 1/AA/1572:1576, 1/AA/1587:1593 | No text annotation Not in a motif group | homologous IL_7RQB_063 NA | |
| IL_4WQU_066 | 1/AA/1698:1703, 1/AA/2026:2028 | No text annotation Not in a motif group | homologous IL_7RQB_064 NA | |
| IL_4WQU_067 | 1/AA/1710:1712, 1/AA/2017:2019 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 NA | |
| IL_4WQU_068 | 1/AA/1713:1716, 1/AA/2015:2016 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 NA | |
| IL_4WQU_069 | 1/AA/1716:1721, 1/AA/2012:2015 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 NA | |
| IL_4WQU_070 | 1/AA/1733:1738, 1/AA/1743:1749 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 NA | |
| IL_4WQU_071 | 1/AA/1801:1802, 1/AA/2002:2004 | Single bulged A Not in a motif group | homologous IL_7RQB_069 NA | |
| IL_4WQU_072 | 1/AA/1829:1835, 1/AA/1844:1852 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 NA | |
| IL_4WQU_073 | 1/AA/1868:1871, 1/AA/1924:1925 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 NA | |
| IL_4WQU_074 | 1/AA/1872:1873, 1/AA/1920:1923 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 NA | |
| IL_4WQU_075 | 1/AA/1877:1880, 1/AA/1915:1916 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 NA | |
| IL_4WQU_076 | 1/AA/1882:1886, 1/AA/1909:1913 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 NA | |
| IL_4WQU_077 | 1/AA/1887:1891, 1/AA/1904:1908 | Triple sheared Not in a motif group | homologous IL_7RQB_075 NA | |
| IL_4WQU_078 | 1/AA/1955:1956, 1/AA/1986:1989 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 NA | |
| IL_4WQU_079 | 1/AA/1956:1967, 1/AA/1983:1986 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_4WQU_080 | 1/AA/2072:2074, 1/AA/2629:2630 | Major groove platform Not in a motif group | homologous IL_7RQB_078 NA | |
| IL_4WQU_081 | 1/AA/2076:2079, 1/AA/2623:2627 | No text annotation Not in a motif group | ||
| IL_4WQU_082 | 1/AA/2089:2091, 1/AA/2454:2455 | Single bulged U Not in a motif group | homologous IL_7RQB_080 NA | |
| IL_4WQU_083 | 1/AA/2092:2093, 1/AA/2450:2453 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.5 | |
| IL_4WQU_084 | 1/AA/2103:2105, 1/AA/2248:2251 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 NA | |
| IL_4WQU_085 | 1/AA/2107:2109, 1/AA/2244:2246 | No text annotation Not in a motif group | homologous IL_7RQB_083 NA | |
| IL_4WQU_086 | 1/AA/2122:2125, 1/AA/2208:2211 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.4 | |
| IL_4WQU_090 | 1/AA/2146:2149, 1/AA/2183:2196 | No text annotation Not in a motif group | homologous IL_3U4M_003 IL_75283.2 | |
| IL_4WQU_094 | 1/AA/2309:2311, 1/AA/2329:2333 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_088 NA | |
| IL_4WQU_095 | 1/AA/2362:2365, 1/AA/2376:2379 | Double sheared Not in a motif group | homologous IL_7RQB_089 NA | |
| IL_4WQU_096 | 1/AA/2413:2415, 1/AA/2426:2427 | Major groove platform Not in a motif group | homologous IL_7RQB_090 NA | |
| IL_4WQU_097 | 1/AA/2465:2466, 1/AA/2510:2512 | Single stack bend Not in a motif group | homologous IL_7RQB_091 NA | |
| IL_4WQU_098 | 1/AA/2466:2467, 1/AA/2508:2510 | Major groove platform Not in a motif group | geometric IL_7RQB_092 NA | |
| IL_4WQU_099 | 1/AA/2469:2471, 1/AA/2505:2506 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.4 | |
| IL_4WQU_100 | 1/AA/2471:2473, 1/AA/2501:2505 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 NA | |
| IL_4WQU_101 | 1/AA/2478:2482, 1/AA/2492:2496 | Triple sheared Not in a motif group | homologous IL_7RQB_095 NA | |
| IL_4WQU_102 | 1/AA/2519:2520, 1/AA/2592:2594 | Major groove platform Not in a motif group | homologous IL_7RQB_096 NA | |
| IL_4WQU_103 | 1/AA/2522:2524, 1/AA/2586:2590 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 NA | |
| IL_4WQU_104 | 1/AA/2524:2525, 1/AA/2583:2586 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 NA | |
| IL_4WQU_105 | 1/AA/2534:2535, 1/AA/2552:2555 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.4 | |
| IL_4WQU_107 | 1/AA/2603:2604, 1/AA/2613:2615 | Single bulged A Not in a motif group | homologous IL_7RQB_101 NA | |
| IL_4WQU_108 | 1/AA/2648:2652, 1/AA/2787:2795 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 NA | |
| IL_4WQU_109 | 1/AA/2664:2670, 1/AA/2675:2680 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 NA | |
| IL_4WQU_110 | 1/AA/2692:2696, 1/AA/2738:2740 | C-loop Not in a motif group | homologous IL_7RQB_104 NA | |
| IL_4WQU_111 | 1/AA/2699:2703, 1/AA/2731:2735 | No text annotation Not in a motif group | homologous IL_7RQB_105 NA | |
| IL_4WQU_112 | 1/AA/2707:2708, 1/AA/2723:2727 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 NA | |
| IL_4WQU_113 | 1/AA/2750:2755, 1/AA/2775:2780 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 NA | |
| IL_4WQU_114 | 1/AA/2848:2849, 1/AA/2888:2890 | Single bulged C Not in a motif group | homologous IL_7RQB_108 NA | |
| IL_4WQU_115 | 1/AA/2853:2856, 1/AA/2880:2884 | No text annotation Not in a motif group | homologous IL_7RQB_109 NA | |
| IL_4WQU_116 | 1/AA/2857:2862, 1/AA/2875:2879 | No text annotation Not in a motif group | homologous IL_7RQB_110 NA | |
| IL_4WQU_117 | 1/AB/17:18, 1/AB/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 NA | |
| IL_4WQU_118 | 1/AB/23:28, 1/AB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4WQU_119 | 1/AB/30:31, 1/AB/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 NA | |
| IL_4WQU_120 | 1/AB/34:38, 1/AB/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 NA | |
| IL_4WQU_121 | 1/AB/71:79, 1/AB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 NA | |
| IL_4WQU_122 | 1/BA/30:32, 1/BA/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.4 | |
| IL_4WQU_123 | 1/BA/44:45, 1/BA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.7 | |
| IL_4WQU_124 | 1/BA/47:52, 1/BA/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_14177.1 | |
| IL_4WQU_125 | 1/BA/54:56, 1/BA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_80097.2 | |
| IL_4WQU_126 | 1/BA/63:66, 1/BA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_4WQU_127 | 1/BA/67:69, 1/BA/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_86319.3 | |
| IL_4WQU_128 | 1/BA/71:76, 1/BA/93:98 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_67743.1 | |
| IL_4WQU_129 | 1/BA/129:131, 1/BA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.3 | |
| IL_4WQU_130 | 1/BA/132:136, 1/BA/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.4 | |
| IL_4WQU_132 | 1/BA/148:153, 1/BA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_4WQU_133 | 1/BA/186:188, 1/BA/189L:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_86319.3 | |
| IL_4WQU_134 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.3 | |
| IL_4WQU_135 | 1/BA/249:252, 1/BA/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_4WQU_136 | 1/BA/292:293, 1/BA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_4WQU_137 | 1/BA/367:369, 1/BA/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.17 | |
| IL_4WQU_138 | 1/BA/370:375, 1/BA/389:391 | No text annotation Not in a motif group | ||
| IL_4WQU_139 | 1/BA/375:376, 1/BA/387:389 | Single bulged G Not in a motif group | geometric IL_4LFB_016 IL_00225.4 | |
| IL_4WQU_140 | 1/BA/409:416, 1/BA/427:433 | No text annotation Not in a motif group | ||
| IL_4WQU_141 | 1/BA/446:450, 1/BA/483:488 | No text annotation Not in a motif group | ||
| IL_4WQU_142 | 1/BA/450:455, 1/BA/476:483 | No text annotation Not in a motif group | ||
| IL_4WQU_144 | 1/BA/504:511, 1/BA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.8 | |
| IL_4WQU_145 | 1/BA/515:521, 1/BA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4WQU_146 | 1/BA/569:575, 1/BA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_38186.1 | |
| IL_4WQU_147 | 1/BA/580:584, 1/BA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.2 | |
| IL_4WQU_148 | 1/BA/594:596, 1/BA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.4 | |
| IL_4WQU_149 | 1/BA/597:598, 1/BA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.9 | |
| IL_4WQU_150 | 1/BA/605:613, 1/BA/627:633 | No text annotation Not in a motif group | ||
| IL_4WQU_151 | 1/BA/654:655, 1/BA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.3 | |
| IL_4WQU_152 | 1/BA/657:658, 1/BA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.4 | |
| IL_4WQU_153 | 1/BA/662:666, 1/BA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4WQU_154 | 1/BA/673:678, 1/BA/712:717 | No text annotation Not in a motif group | homologous IL_5J7L_034 IL_04668.2 | |
| IL_4WQU_155 | 1/BA/683:688, 1/BA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4WQU_156 | 1/BA/774:778, 1/BA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_4WQU_157 | 1/BA/779:783, 1/BA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.2 | |
| IL_4WQU_158 | 1/BA/887:894, 1/BA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4WQU_159 | 1/BA/922:923, 1/BA/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.7 | |
| IL_4WQU_160 | 1/BA/925:927, 1/BA/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.4 | |
| IL_4WQU_161 | 1/BA/933:935, 1/BA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_4WQU_162 | 1/BA/952:954, 1/BA/1226:1229 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4WF9_003 IL_65006.1 | |
| IL_4WQU_164 | 1/BA/993:997, 1/BA/1044:1045 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
| IL_4WQU_167 | 1/BA/1007:1010, 1/BA/1019:1022 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_30621.4 | |
| IL_4WQU_168 | 1/BA/1048:1050, 1/BA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.17 | |
| IL_4WQU_169 | 1/BA/1052:1057, 1/BA/1203:1206 | No text annotation Not in a motif group | ||
| IL_4WQU_170 | 1/BA/1057:1058, 1/BA/1199:1203 | Minor groove platform Not in a motif group | geometric IL_5J7L_048 IL_80097.2 | |
| IL_4WQU_171 | 1/BA/1060:1061, 1/BA/1195:1197 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.17 | |
| IL_4WQU_172 | 1/BA/1061:1063, 1/BA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_86319.3 | |
| IL_4WQU_173 | 1/BA/1124:1127, 1/BA/1145:1149 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.7 | |
| IL_4WQU_174 | 1/BA/1129:1132, 1/BA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_4LFB_049 IL_15052.1 | |
| IL_4WQU_175 | 1/BA/1247:1253, 1/BA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_4WQU_176 | 1/BA/1255:1258, 1/BA/1277:1282 | No text annotation Not in a motif group | homologous IL_6CZR_161 IL_75461.4 | |
| IL_4WQU_177 | 1/BA/1259:1263, 1/BA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.9 | |
| IL_4WQU_178 | 1/BA/1303:1308, 1/BA/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_4WQU_179 | 1/BA/1399:1401, 1/BA/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_4WQU_180 | 1/BA/1401:1404, 1/BA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4WQU_181 | 1/BA/1405:1407, 1/BA/1494:1496 | No text annotation Not in a motif group | geometric IL_5MWI_007 IL_86319.3 | |
| IL_4WQU_182 | 1/BA/1407:1409, 1/BA/1491:1494 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_64417.2 | |
| IL_4WQU_183 | 1/BA/1412:1414, 1/BA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_86319.3 | |
| IL_4WQU_184 | 1/BA/1416:1419, 1/BA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.11 | |
| IL_4WQU_185 | 1/BA/1431:1435, 1/BA/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.2 | |
| IL_4WQU_186 | 1/BA/1435:1437, 1/BA/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_86319.3 | |
| IL_4WQU_187 | 1/BA/1440:1443, 1/BA/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.3 | |
| IL_4WQU_188 | 1/CA/24:30, 1/CA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 NA | |
| IL_4WQU_189 | 1/CA/36:37, 1/CA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 NA | |
| IL_4WQU_190 | 1/CA/42:43, 1/CA/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 NA | |
| IL_4WQU_191 | 1/CA/81:85, 1/CA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 NA | |
| IL_4WQU_192 | 1/CA/183:184, 1/CA/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 NA | |
| IL_4WQU_193 | 1/CA/188:194, 1/CA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 NA | |
| IL_4WQU_194 | 1/CA/239:245, 1/CA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 NA | |
| IL_4WQU_195 | 1/CA/272D:272E, 1/CA/363E:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 NA | |
| IL_4WQU_196 | 1/CA/272J:280, 1/CA/360:363 | No text annotation Not in a motif group | ||
| IL_4WQU_197 | 1/CA/280:284, 1/CA/357:360 | tSH-tHW Not in a motif group | geometric IL_7RQB_011 NA | |
| IL_4WQU_198 | 1/CA/288:290, 1/CA/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 NA | |
| IL_4WQU_199 | 1/CA/293:295, 1/CA/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 NA | |
| IL_4WQU_200 | 1/CA/481:484, 1/CA/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 NA | |
| IL_4WQU_201 | 1/CA/564:566, 1/CA/575:577 | No text annotation Not in a motif group | homologous IL_7RQB_015 NA | |
| IL_4WQU_202 | 1/CA/606:610, 1/CA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 NA | |
| IL_4WQU_203 | 1/CA/672:674, 1/CA/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 NA | |
| IL_4WQU_204 | 1/CA/674:678, 1/CA/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 NA | |
| IL_4WQU_205 | 1/CA/697:698, 1/CA/763:765 | Single bulged A Not in a motif group | geometric IL_7RQB_019 NA | |
| IL_4WQU_206 | 1/CA/702:703, 1/CA/728:730 | Single bulged G Not in a motif group | homologous IL_7RQB_020 NA | |
| IL_4WQU_207 | 1/CA/703:707, 1/CA/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 NA | |
| IL_4WQU_208 | 1/CA/738:741, 1/CA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 NA | |
| IL_4WQU_209 | 1/CA/775:777, 1/CA/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 NA | |
| IL_4WQU_210 | 1/CA/837:838, 1/CA/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 NA | |
| IL_4WQU_211 | 1/CA/844:846, 1/CA/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 NA | |
| IL_4WQU_212 | 1/CA/846:850, 1/CA/927:931 | No text annotation Not in a motif group | geometric IL_7RQB_026 NA | |
| IL_4WQU_214 | 1/CA/858:862, 1/CA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 NA | |
| IL_4WQU_215 | 1/CA/862:863, 1/CA/913:915 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 NA | |
| IL_4WQU_216 | 1/CA/864:868, 1/CA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 NA | |
| IL_4WQU_217 | 1/CA/870:872, 1/CA/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 NA | |
| IL_4WQU_218 | 1/CA/875:880, 1/CA/897:902 | No text annotation Not in a motif group | ||
| IL_4WQU_219 | 1/CA/880:881, 1/CA/895:897 | Single bulged A Not in a motif group | homologous IL_7RQB_033 NA | |
| IL_4WQU_220 | 1/CA/952:954, 1/CA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 NA | |
| IL_4WQU_221 | 1/CA/994:996, 1/CA/1159:1160 | Single bulged C Not in a motif group | homologous IL_7A0S_032 IL_61258.13 | |
| IL_4WQU_222 | 1/CA/998:1002, 1/CA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 NA | |
| IL_4WQU_223 | 1/CA/1004:1011, 1/CA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_7RQB_037 NA | |
| IL_4WQU_224 | 1/CA/1011:1013, 1/CA/1149:1150 | Single bulged U Not in a motif group | geometric IL_7RQB_038 NA | |
| IL_4WQU_225 | 1/CA/1018:1024, 1/CA/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.4 | |
| IL_4WQU_226 | 1/CA/1024:1030, 1/CA/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 NA | |
| IL_4WQU_227 | 1/CA/1031:1034, 1/CA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 NA | |
| IL_4WQU_229 | 1/CA/1041:1043, 1/CA/1112:1114 | No text annotation Not in a motif group | ||
| IL_4WQU_230 | 1/CA/1043:1055, 1/CA/1104:1112 | No text annotation Not in a motif group | ||
| IL_4WQU_231 | 1/CA/1059:1063, 1/CA/1076:1079 | No text annotation Not in a motif group | ||
| IL_4WQU_232 | 1/CA/1063:1064, 1/CA/1074:1076 | Not an internal loop Not in a motif group | geometric IL_4UYK_002 IL_76488.5 | |
| IL_4WQU_233 | 1/CA/1196:1198, 1/CA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 NA | |
| IL_4WQU_234 | 1/CA/1202:1206, 1/CA/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 NA | |
| IL_4WQU_235 | 1/CA/1208:1215, 1/CA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 NA | |
| IL_4WQU_236 | 1/CA/1219:1221, 1/CA/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 NA | |
| IL_4WQU_237 | 1/CA/1262:1269, 1/CA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 NA | |
| IL_4WQU_238 | 1/CA/1310:1313, 1/CA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 NA | |
| IL_4WQU_239 | 1/CA/1319:1323, 1/CA/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 NA | |
| IL_4WQU_240 | 1/CA/1351:1355, 1/CA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 NA | |
| IL_4WQU_241 | 1/CA/1357:1361, 1/CA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 NA | |
| IL_4WQU_242 | 1/CA/1415:1416, 1/CA/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 NA | |
| IL_4WQU_243 | 1/CA/1417:1421, 1/CA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 NA | |
| IL_4WQU_244 | 1/CA/1433:1435, 1/CA/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 NA | |
| IL_4WQU_245 | 1/CA/1437:1440, 1/CA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 NA | |
| IL_4WQU_246 | 1/CA/1448:1450, 1/CA/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 NA | |
| IL_4WQU_247 | 1/CA/1450A:1451, 1/CA/1459:1461 | Single bulged A Not in a motif group | geometric IL_7RQB_059 NA | |
| IL_4WQU_248 | 1/CA/1469:1473, 1/CA/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 NA | |
| IL_4WQU_249 | 1/CA/1481:1482, 1/CA/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 NA | |
| IL_4WQU_250 | 1/CA/1489:1491, 1/CA/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 NA | |
| IL_4WQU_251 | 1/CA/1526:1529, 1/CA/1540:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 NA | |
| IL_4WQU_252 | 1/CA/1651:1656, 1/CA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 NA | |
| IL_4WQU_253 | 1/CA/1663:1665, 1/CA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 NA | |
| IL_4WQU_254 | 1/CA/1666:1669, 1/CA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 NA | |
| IL_4WQU_255 | 1/CA/1669:1674, 1/CA/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 NA | |
| IL_4WQU_256 | 1/CA/1686:1691, 1/CA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 NA | |
| IL_4WQU_257 | 1/CA/1770:1771, 1/CA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 NA | |
| IL_4WQU_258 | 1/CA/1798:1804, 1/CA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 NA | |
| IL_4WQU_259 | 1/CA/1837:1840, 1/CA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 NA | |
| IL_4WQU_260 | 1/CA/1841:1842, 1/CA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.3 | |
| IL_4WQU_261 | 1/CA/1846:1849, 1/CA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 NA | |
| IL_4WQU_262 | 1/CA/1851:1855, 1/CA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 NA | |
| IL_4WQU_263 | 1/CA/1856:1861, 1/CA/1881:1886 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_4WQU_264 | 1/CA/1933:1934, 1/CA/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 NA | |
| IL_4WQU_265 | 1/CA/1934:1945, 1/CA/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_4WQU_266 | 1/CA/2050:2052, 1/CA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 NA | |
| IL_4WQU_267 | 1/CA/2054:2057, 1/CA/2611:2615 | No text annotation Not in a motif group | ||
| IL_4WQU_268 | 1/CA/2067:2069, 1/CA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 NA | |
| IL_4WQU_269 | 1/CA/2070:2071, 1/CA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 NA | |
| IL_4WQU_270 | 1/CA/2081:2083, 1/CA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 NA | |
| IL_4WQU_271 | 1/CA/2085:2087, 1/CA/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 NA | |
| IL_4WQU_272 | 1/CA/2099:2101, 1/CA/2188:2190 | No text annotation Not in a motif group | geometric IL_1NBS_006 IL_86319.3 | |
| IL_4WQU_273 | 1/CA/2102:2104, 1/CA/2185:2187 | No text annotation Not in a motif group | geometric IL_7RQB_034 NA | |
| IL_4WQU_278 | 1/CA/2124:2128, 1/CA/2160:2174 | No text annotation Not in a motif group | ||
| IL_4WQU_282 | 1/CA/2297:2299, 1/CA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_088 NA | |
| IL_4WQU_283 | 1/CA/2350:2353, 1/CA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 NA | |
| IL_4WQU_284 | 1/CA/2401:2403, 1/CA/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 NA | |
| IL_4WQU_285 | 1/CA/2453:2454, 1/CA/2498:2500 | Single stack bend Not in a motif group | homologous IL_7RQB_091 NA | |
| IL_4WQU_286 | 1/CA/2454:2455, 1/CA/2496:2498 | Major groove platform Not in a motif group | geometric IL_7RQB_092 NA | |
| IL_4WQU_287 | 1/CA/2457:2459, 1/CA/2493:2494 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.4 | |
| IL_4WQU_288 | 1/CA/2459:2461, 1/CA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 NA | |
| IL_4WQU_289 | 1/CA/2466:2470, 1/CA/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 NA | |
| IL_4WQU_290 | 1/CA/2507:2508, 1/CA/2580:2582 | Major groove platform Not in a motif group | homologous IL_7A0S_088 IL_76223.3 | |
| IL_4WQU_291 | 1/CA/2510:2512, 1/CA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 NA | |
| IL_4WQU_292 | 1/CA/2512:2513, 1/CA/2571:2574 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 NA | |
| IL_4WQU_293 | 1/CA/2522:2523, 1/CA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_4WF9_097 IL_95601.4 | |
| IL_4WQU_294 | 1/CA/2591:2592, 1/CA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 NA | |
| IL_4WQU_295 | 1/CA/2636:2640, 1/CA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 NA | |
| IL_4WQU_296 | 1/CA/2652:2658, 1/CA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 NA | |
| IL_4WQU_297 | 1/CA/2680:2684, 1/CA/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 NA | |
| IL_4WQU_298 | 1/CA/2687:2691, 1/CA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 NA | |
| IL_4WQU_299 | 1/CA/2695:2696, 1/CA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 NA | |
| IL_4WQU_300 | 1/CA/2737:2742, 1/CA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 NA | |
| IL_4WQU_301 | 1/CA/2838:2839, 1/CA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 NA | |
| IL_4WQU_302 | 1/CA/2843:2845, 1/CA/2871:2874 | No text annotation Not in a motif group | ||
| IL_4WQU_303 | 1/CA/2847:2852, 1/CA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 NA | |
| IL_4WQU_305 | 1/CB/17:18, 1/CB/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 NA | |
| IL_4WQU_306 | 1/CB/23:28, 1/CB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4WQU_307 | 1/CB/30:32, 1/CB/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_4WQU_308 | 1/CB/34:38, 1/CB/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 NA | |
| IL_4WQU_309 | 1/CB/71:79, 1/CB/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 NA | |
| IL_4WQU_310 | 1/DA/30:32, 1/DA/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.4 | |
| IL_4WQU_311 | 1/DA/44:45, 1/DA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.7 | |
| IL_4WQU_312 | 1/DA/47:52, 1/DA/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_14177.1 | |
| IL_4WQU_313 | 1/DA/54:56, 1/DA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_80097.2 | |
| IL_4WQU_314 | 1/DA/63:66, 1/DA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_4WQU_315 | 1/DA/67:69, 1/DA/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_86319.3 | |
| IL_4WQU_316 | 1/DA/129:131, 1/DA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.3 | |
| IL_4WQU_317 | 1/DA/132:136, 1/DA/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.4 | |
| IL_4WQU_318 | 1/DA/148:153, 1/DA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_4WQU_319 | 1/DA/186:189, 1/DA/189K:191 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.4 | |
| IL_4WQU_320 | 1/DA/242:247, 1/DA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.3 | |
| IL_4WQU_321 | 1/DA/249:252, 1/DA/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_4WQU_322 | 1/DA/292:293, 1/DA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_4WQU_323 | 1/DA/367:369, 1/DA/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.17 | |
| IL_4WQU_324 | 1/DA/370:375, 1/DA/389:391 | No text annotation Not in a motif group | ||
| IL_4WQU_325 | 1/DA/375:376, 1/DA/387:389 | Single bulged G Not in a motif group | homologous IL_4LFB_016 IL_00225.4 | |
| IL_4WQU_326 | 1/DA/409:416, 1/DA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4WQU_327 | 1/DA/446:450, 1/DA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4LFB_018 IL_88269.3 | |
| IL_4WQU_328 | 1/DA/450:455, 1/DA/476:483 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_11882.1 | |
| IL_4WQU_330 | 1/DA/504:511, 1/DA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.8 | |
| IL_4WQU_331 | 1/DA/515:521, 1/DA/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_4WQU_332 | 1/DA/569:575, 1/DA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_38186.1 | |
| IL_4WQU_333 | 1/DA/580:584, 1/DA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.2 | |
| IL_4WQU_334 | 1/DA/594:596, 1/DA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.4 | |
| IL_4WQU_335 | 1/DA/597:598, 1/DA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.9 | |
| IL_4WQU_336 | 1/DA/605:612, 1/DA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_4WQU_337 | 1/DA/654:655, 1/DA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.3 | |
| IL_4WQU_338 | 1/DA/657:658, 1/DA/747:749 | Major groove platform Not in a motif group | homologous IL_6CZR_140 IL_27635.4 | |
| IL_4WQU_339 | 1/DA/662:666, 1/DA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4WQU_340 | 1/DA/673:678, 1/DA/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.2 | |
| IL_4WQU_341 | 1/DA/683:688, 1/DA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4WQU_342 | 1/DA/774:778, 1/DA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_4WQU_343 | 1/DA/779:783, 1/DA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.2 | |
| IL_4WQU_344 | 1/DA/887:894, 1/DA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4WQU_345 | 1/DA/922:923, 1/DA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.7 | |
| IL_4WQU_346 | 1/DA/925:928, 1/DA/1389:1391 | CA cWW with bulged A Not in a motif group | geometric IL_4P3T_005 IL_86319.3 | |
| IL_4WQU_347 | 1/DA/933:936, 1/DA/1379:1384 | No text annotation Not in a motif group | homologous IL_6CZR_149 IL_93211.1 | |
| IL_4WQU_348 | 1/DA/948:950, 1/DA/1231:1233 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_70707.3 | |
| IL_4WQU_349 | 1/DA/953:954, 1/DA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.5 | |
| IL_4WQU_354 | 1/DA/1009:1011, 1/DA/1018:1020 | No text annotation Not in a motif group | geometric IL_4V88_395 IL_76273.2 | |
| IL_4WQU_355 | 1/DA/1047:1050, 1/DA/1208:1210 | Isolated cWH basepair Not in a motif group | geometric IL_3SJ2_002 IL_70707.3 | |
| IL_4WQU_356 | 1/DA/1052:1056, 1/DA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_4WQU_357 | 1/DA/1056:1058, 1/DA/1199:1204 | No text annotation Not in a motif group | ||
| IL_4WQU_358 | 1/DA/1059:1061, 1/DA/1195:1198 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_70707.3 | |
| IL_4WQU_359 | 1/DA/1061:1063, 1/DA/1193:1195 | No text annotation Not in a motif group | geometric IL_5MWI_001 IL_86319.3 | |
| IL_4WQU_360 | 1/DA/1121:1127, 1/DA/1145:1152 | No text annotation Not in a motif group | ||
| IL_4WQU_361 | 1/DA/1129:1132, 1/DA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_4LFB_049 IL_15052.1 | |
| IL_4WQU_362 | 1/DA/1158:1161, 1/DA/1175:1181 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_4WQU_364 | 1/DA/1247:1253, 1/DA/1284:1290 | No text annotation Not in a motif group | homologous IL_6CZR_160 IL_09129.1 | |
| IL_4WQU_365 | 1/DA/1255:1258, 1/DA/1277:1282 | No text annotation Not in a motif group | ||
| IL_4WQU_366 | 1/DA/1258:1262, 1/DA/1273:1277 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.9 | |
| IL_4WQU_367 | 1/DA/1303:1308, 1/DA/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_4WQU_368 | 1/DA/1399:1401, 1/DA/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_4WQU_369 | 1/DA/1401:1404, 1/DA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4WQU_370 | 1/DA/1405:1407, 1/DA/1494:1496 | No text annotation Not in a motif group | geometric IL_5MWI_007 IL_86319.3 | |
| IL_4WQU_371 | 1/DA/1407:1409, 1/DA/1491:1494 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_64417.2 | |
| IL_4WQU_372 | 1/DA/1412:1414, 1/DA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_86319.3 | |
| IL_4WQU_373 | 1/DA/1416:1419, 1/DA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.11 | |
| IL_4WQU_374 | 1/DA/1431:1435, 1/DA/1466:1469 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.2 | |
| IL_4WQU_375 | 1/DA/1435:1437, 1/DA/1464:1466 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_86319.3 | |
| IL_4WQU_376 | 1/DA/1440:1443, 1/DA/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4WQU_009 | No text annotation | ||
| IL_4WQU_016 | No text annotation | ||
| IL_4WQU_034 | No text annotation | ||
| IL_4WQU_044 | No text annotation | ||
| IL_4WQU_087 | UG cWW | ||
| IL_4WQU_088 | No text annotation | ||
| IL_4WQU_089 | No text annotation | ||
| IL_4WQU_091 | Kink-turn | ||
| IL_4WQU_092 | No text annotation | ||
| IL_4WQU_093 | No text annotation | ||
| IL_4WQU_106 | No text annotation | ||
| IL_4WQU_131 | Isolated cWH basepair | ||
| IL_4WQU_143 | No text annotation | ||
| IL_4WQU_163 | No text annotation | ||
| IL_4WQU_165 | No text annotation | ||
| IL_4WQU_166 | Tandem non-canonical cWW pairs | ||
| IL_4WQU_213 | No text annotation | ||
| IL_4WQU_228 | No text annotation | ||
| IL_4WQU_274 | No text annotation | ||
| IL_4WQU_275 | No text annotation | ||
| IL_4WQU_276 | No text annotation | ||
| IL_4WQU_277 | No text annotation | ||
| IL_4WQU_279 | No text annotation | ||
| IL_4WQU_280 | Isolated cWH basepair | ||
| IL_4WQU_281 | Tandem non-canonical cWW pairs | ||
| IL_4WQU_304 | No text annotation | ||
| IL_4WQU_329 | No text annotation | ||
| IL_4WQU_350 | No text annotation | ||
| IL_4WQU_351 | Minor groove platform | ||
| IL_4WQU_352 | No text annotation | ||
| IL_4WQU_353 | Tandem non-canonical cWW pairs | ||
| IL_4WQU_363 | UG cWW | ||
| IL_4WQU_377 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4WQU_001 | 1/AA/730:736, 1/AA/820:822, 1/AA/838:841 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_4WQU_002 | 1/AA/745:747, 1/AA/779:783, 1/AA/807:810 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_4WQU_003 | 1/AA/1101:1104, 1/AA/1126:1133, 1/AA/1148:1150 | No text annotation Not in a motif group | ||
| J3_4WQU_004 | 1/AA/1344:1349, 1/AA/1671:1673, 1/AA/1686:1689 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_4WQU_005 | 1/AA/1352:1355, 1/AA/1651:1657, 1/AA/1666:1668 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_4WQU_006 | 1/AA/2113:2115, 1/AA/2218:2222, 1/AA/2235:2240 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_4WQU_007 | 1/AA/2307:2309, 1/AA/2333:2335, 1/AA/2344:2349 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_4WQU_008 | 1/AA/2529:2532, 1/AA/2557:2559, 1/AA/2573:2579 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_4WQU_009 | 1/AA/2802:2804, 1/AA/2816:2821, 1/AA/2899:2903 | No text annotation Not in a motif group | homologous J3_7RQB_013 NA | |
| J3_4WQU_010 | 1/BA/826:829, 1/BA/857:861, 1/BA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4WQU_011 | 1/BA/936:939, 1/BA/1344:1350, 1/BA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_4WQU_012 | 1/BA/943:946, 1/BA/1235:1237, 1/BA/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_4WQU_013 | 1/BA/955:962, 1/BA/973:984, 1/BA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4WQU_014 | 1/BA/990:993, 1/BA/1045:1047, 1/BA/1210:1215 | No text annotation Not in a motif group | homologous J3_6CZR_021 NA | |
| J3_4WQU_015 | 1/BA/1002:1007, 1/BA/1022:1028, 1/BA/1033:1038 | No text annotation Not in a motif group | ||
| J3_4WQU_016 | 1/BA/1063:1068, 1/BA/1107:1113, 1/BA/1187:1193 | No text annotation Not in a motif group | ||
| J3_4WQU_017 | 1/BA/1116:1118, 1/BA/1155:1161, 1/BA/1175:1184 | No text annotation Not in a motif group | ||
| J3_4WQU_018 | 1/BA/1237:1241, 1/BA/1296:1303, 1/BA/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
| J3_4WQU_019 | 1/CA/683:689, 1/CA/773:775, 1/CA/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_4WQU_020 | 1/CA/698:700, 1/CA/732:736, 1/CA/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_4WQU_021 | 1/CA/1055:1059, 1/CA/1079:1091, 1/CA/1100:1104 | No text annotation Not in a motif group | ||
| J3_4WQU_022 | 1/CA/1298:1303, 1/CA/1625:1627, 1/CA/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_4WQU_023 | 1/CA/1306:1309, 1/CA/1605:1611, 1/CA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_4WQU_024 | 1/CA/2091:2093, 1/CA/2196:2200, 1/CA/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_4WQU_025 | 1/CA/2295:2297, 1/CA/2321:2323, 1/CA/2332:2337 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_4WQU_026 | 1/CA/2517:2520, 1/CA/2545:2547, 1/CA/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_4WQU_027 | 1/CB/11:16, 1/CB/68:70, 1/CB/107:110 | No text annotation Not in a motif group | ||
| J3_4WQU_028 | 1/DA/826:829, 1/DA/857:861, 1/DA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4WQU_029 | 1/DA/936:939, 1/DA/1344:1350, 1/DA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_4WQU_030 | 1/DA/943:946, 1/DA/1235:1237, 1/DA/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_4WQU_031 | 1/DA/955:962, 1/DA/973:985, 1/DA/1220:1225 | No text annotation Not in a motif group | ||
| J3_4WQU_032 | 1/DA/990:993, 1/DA/1045:1047, 1/DA/1210:1215 | No text annotation Not in a motif group | homologous J3_5J7L_007 NA | |
| J3_4WQU_034 | 1/DA/1063:1068, 1/DA/1107:1114, 1/DA/1186:1193 | No text annotation Not in a motif group | ||
| J3_4WQU_035 | 1/DA/1116:1120, 1/DA/1153:1158, 1/DA/1181:1184 | No text annotation Not in a motif group | ||
| J3_4WQU_036 | 1/DA/1237:1241, 1/DA/1296:1303, 1/DA/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4WQU_033 | No text annotation |
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