5TBW Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5TBW_001 | 1/1/38:45 | No text annotation HL_06192.2 | ||
| HL_5TBW_002 | 1/1/69:74 | No text annotation HL_02862.2 | ||
| HL_5TBW_003 | 1/1/90:96 | No text annotation HL_67216.7 | ||
| HL_5TBW_004 | 1/1/132:136 | No text annotation HL_98426.1 | ||
| HL_5TBW_005 | 1/1/194:201 | T-loop with 1 bulged base HL_89380.2 | ||
| HL_5TBW_006 | 1/1/208:212 | No text annotation HL_98984.2 | ||
| HL_5TBW_007 | 1/1/216:224 | No text annotation HL_08002.8 | ||
| HL_5TBW_008 | 1/1/278:287 | No text annotation HL_71554.2 | ||
| HL_5TBW_009 | 1/1/303:312 | No text annotation HL_12078.2 | ||
| HL_5TBW_010 | 1/1/357:362 | Other HL HL_42097.1 | ||
| HL_5TBW_011 | 1/1/382:387 | GNRA HL_42097.1 | ||
| HL_5TBW_012 | 1/1/543:548 | No text annotation HL_86373.2 | ||
| HL_5TBW_013 | 1/1/599:604 | GNRA HL_42097.1 | ||
| HL_5TBW_014 | 1/1/640:649 | T-loop with 2 stacked bulged bases HL_89380.2 | ||
| HL_5TBW_015 | 1/1/686:694 | No text annotation HL_03345.1 | ||
| HL_5TBW_016 | 1/1/707:712 | GNRA HL_42097.1 | ||
| HL_5TBW_017 | 1/1/732:737 | GNRA HL_42097.1 | ||
| HL_5TBW_018 | 1/1/763:768 | No text annotation HL_34168.2 | ||
| HL_5TBW_019 | 1/1/844:849 | GNRA HL_42097.1 | ||
| HL_5TBW_020 | 1/1/876:885 | No text annotation HL_39334.6 | ||
| HL_5TBW_021 | 1/1/910:918 | No text annotation HL_33817.1 | ||
| HL_5TBW_022 | 1/1/958:963 | No text annotation HL_94803.1 | ||
| HL_5TBW_023 | 1/1/1023:1029 | GNRA HL_42097.1 | ||
| HL_5TBW_024 | 1/1/1076:1083 | No text annotation HL_71554.2 | ||
| HL_5TBW_025 | 1/1/1126:1132 | GNRA HL_42097.1 | ||
| HL_5TBW_026 | 1/1/1148:1155 | No text annotation HL_64430.2 | ||
| HL_5TBW_027 | 1/1/1239:1249 | No text annotation HL_07145.1 | ||
| HL_5TBW_028 | 1/1/1266:1275 | No text annotation HL_09136.1 | ||
| HL_5TBW_029 | 1/1/1347:1357 | No text annotation HL_89098.1 | ||
| HL_5TBW_030 | 1/1/1403:1408 | GNRA HL_42097.1 | ||
| HL_5TBW_031 | 1/1/1462:1470 | T-loop with 2 stacked bulged bases HL_89380.2 | ||
| HL_5TBW_032 | 1/1/1506:1512 | No text annotation HL_46680.1 | ||
| HL_5TBW_033 | 1/1/1544:1549 | Other HL HL_76539.2 | ||
| HL_5TBW_035 | 1/1/1599:1608 | No text annotation HL_69023.2 | ||
| HL_5TBW_036 | 1/1/1634:1639 | GNRA HL_42097.1 | ||
| HL_5TBW_037 | 1/1/1680:1688 | No text annotation HL_60812.1 | ||
| HL_5TBW_038 | 1/1/1719:1725 | No text annotation HL_86373.2 | ||
| HL_5TBW_039 | 1/1/1760:1765 | Other HL HL_56691.2 | ||
| HL_5TBW_040 | 1/1/1792:1796 | No text annotation HL_38927.2 | ||
| HL_5TBW_041 | 1/1/1844:1851 | No text annotation HL_64430.2 | ||
| HL_5TBW_042 | 1/1/1862:1868 | GNRA with one bulged base HL_42097.1 | ||
| HL_5TBW_043 | 1/1/1923:1928 | UNCG HL_03562.2 | ||
| HL_5TBW_044 | 1/1/1953:2094 | No text annotation HL_09829.1 | ||
| HL_5TBW_045 | 1/1/2110:2114 | No text annotation HL_20062.1 | ||
| HL_5TBW_046 | 1/1/2135:2145 | No text annotation HL_43613.5 | ||
| HL_5TBW_047 | 1/1/2164:2170 | GNRA HL_42097.1 | ||
| HL_5TBW_048 | 1/1/2220:2225 | Other HL HL_42097.1 | ||
| HL_5TBW_049 | 1/1/2253:2263 | No text annotation HL_71924.2 | ||
| HL_5TBW_050 | 1/1/2292:2300 | No text annotation HL_51824.1 | ||
| HL_5TBW_051 | 1/1/2369:2378 | No text annotation HL_90642.6 | ||
| HL_5TBW_052 | 1/1/2441:2506 | No text annotation HL_66226.1 | ||
| HL_5TBW_053 | 1/1/2568:2573 | No text annotation HL_30239.1 | ||
| HL_5TBW_054 | 1/1/2616:2624 | No text annotation HL_53171.2 | ||
| HL_5TBW_055 | 1/1/2633:2645 | No text annotation HL_19870.6 | ||
| HL_5TBW_056 | 1/1/2673:2681 | No text annotation HL_76406.4 | ||
| HL_5TBW_057 | 1/1/2693:2700 | No text annotation HL_12078.2 | ||
| HL_5TBW_058 | 1/1/2724:2732 | No text annotation HL_92229.2 | ||
| HL_5TBW_059 | 1/1/2744:2749 | GNRA HL_42097.1 | ||
| HL_5TBW_060 | 1/1/2776:2784 | No text annotation HL_96598.1 | ||
| HL_5TBW_061 | 1/1/2840:2848 | No text annotation HL_06192.2 | ||
| HL_5TBW_062 | 1/1/2897:2904 | No text annotation HL_88526.2 | ||
| HL_5TBW_063 | 1/1/2920:2926 | No text annotation HL_43656.2 | ||
| HL_5TBW_064 | 1/1/2963:2968 | GNRA HL_42097.1 | ||
| HL_5TBW_065 | 1/1/3025:3030 | GNRA HL_42097.1 | ||
| HL_5TBW_066 | 1/1/3068:3073 | Ribsomal LSU H95 HL_46680.1 | ||
| HL_5TBW_067 | 1/1/3110:3124 | No text annotation HL_56677.7 | ||
| HL_5TBW_068 | 1/1/3194:3197 | No text annotation HL_98426.1 | ||
| HL_5TBW_069 | 1/1/3240:3247 | No text annotation HL_14449.2 | ||
| HL_5TBW_070 | 1/1/3303:3311 | No text annotation HL_27930.1 | ||
| HL_5TBW_071 | 1/1/3350:3353 | No text annotation HL_53837.1 | ||
| HL_5TBW_072 | 1/3/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_5TBW_073 | 1/3/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_5TBW_074 | 1/4/73:78 | Other HL HL_50142.2 | ||
| HL_5TBW_075 | 1/4/108:114 | No text annotation HL_87939.1 | ||
| HL_5TBW_076 | 1/4/124:129 | No text annotation HL_96851.2 | ||
| HL_5TBW_077 | 1/A/7:17 | No text annotation Not in a motif group | geometric HL_4V88_186 HL_89881.2 | |
| HL_5TBW_078 | 1/A/70:81 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_5TBW_079 | 1/A/154:160 | Other HL Not in a motif group | geometric HL_4V88_188 HL_76539.2 | |
| HL_5TBW_080 | 1/A/190:195 | No text annotation Not in a motif group | geometric HL_5TBW_002 HL_02862.2 | |
| HL_5TBW_082 | 1/A/243:250 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V88_191 HL_27930.1 | |
| HL_5TBW_083 | 1/A/276:279 | No text annotation Not in a motif group | geometric HL_4WF9_037 HL_94803.1 | |
| HL_5TBW_084 | 1/A/330:338 | No text annotation Not in a motif group | geometric HL_4V88_193 HL_69023.2 | |
| HL_5TBW_085 | 1/A/368:373 | No text annotation Not in a motif group | geometric HL_4V88_194 HL_50142.2 | |
| HL_5TBW_086 | 1/A/393:404 | No text annotation Not in a motif group | geometric HL_4V88_195 HL_84288.1 | |
| HL_5TBW_087 | 1/A/414:419 | UNCG Not in a motif group | geometric HL_4V88_196 HL_03562.2 | |
| HL_5TBW_088 | 1/A/450:456 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_5TBW_089 | 1/A/486:501 | No text annotation Not in a motif group | ||
| HL_5TBW_090 | 1/A/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_5TBW_091 | 1/A/569:574 | Other HL Not in a motif group | geometric HL_4V88_200 HL_53845.1 | |
| HL_5TBW_092 | 1/A/703:735 | No text annotation Not in a motif group | ||
| HL_5TBW_093 | 1/A/764:772 | No text annotation Not in a motif group | geometric HL_4V88_203 HL_46766.2 | |
| HL_5TBW_094 | 1/A/777:783 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_5TBW_095 | 1/A/829:843 | No text annotation Not in a motif group | geometric HL_4V88_205 HL_96598.1 | |
| HL_5TBW_096 | 1/A/900:909 | No text annotation Not in a motif group | geometric HL_4V88_206 HL_12326.1 | |
| HL_5TBW_097 | 1/A/937:942 | Other HL Not in a motif group | geometric HL_4V88_207 HL_87030.2 | |
| HL_5TBW_098 | 1/A/997:1007 | No text annotation Not in a motif group | geometric HL_4V88_208 HL_12326.1 | |
| HL_5TBW_099 | 1/A/1055:1064 | No text annotation Not in a motif group | ||
| HL_5TBW_100 | 1/A/1084:1089 | Other HL Not in a motif group | geometric HL_4V88_210 HL_42097.1 | |
| HL_5TBW_101 | 1/A/1121:1126 | GNRA Not in a motif group | geometric HL_4LFB_020 HL_42097.1 | |
| HL_5TBW_102 | 1/A/1188:1197 | No text annotation Not in a motif group | geometric HL_4V88_212 HL_73530.2 | |
| HL_5TBW_103 | 1/A/1238:1247 | No text annotation Not in a motif group | geometric HL_4V88_213 HL_53597.2 | |
| HL_5TBW_104 | 1/A/1296:1301 | GNRA Not in a motif group | geometric HL_4V88_214 HL_42097.1 | |
| HL_5TBW_105 | 1/A/1309:1316 | No text annotation Not in a motif group | geometric HL_4V88_215 HL_71554.2 | |
| HL_5TBW_106 | 1/A/1359:1364 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_5TBW_107 | 1/A/1396:1402 | No text annotation Not in a motif group | geometric HL_5J7L_026 HL_90617.2 | |
| HL_5TBW_108 | 1/A/1501:1506 | GNRA Not in a motif group | geometric HL_4V88_218 HL_42097.1 | |
| HL_5TBW_109 | 1/A/1550:1561 | No text annotation Not in a motif group | geometric HL_4V88_219 HL_22554.1 | |
| HL_5TBW_110 | 1/A/1594:1602 | No text annotation Not in a motif group | geometric HL_4V88_220 HL_60812.1 | |
| HL_5TBW_112 | 1/A/1778:1783 | Other HL Not in a motif group | geometric HL_4V88_222 HL_16173.1 | |
| HL_5TBW_113 | 1/AR/38:45 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.2 | |
| HL_5TBW_114 | 1/AR/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
| HL_5TBW_115 | 1/AR/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_5TBW_116 | 1/AR/132:136 | No text annotation Not in a motif group | homologous HL_5TBW_004 HL_98426.1 | |
| HL_5TBW_117 | 1/AR/194:201 | T-loop with 1 bulged base Not in a motif group | homologous HL_5TBW_005 HL_89380.2 | |
| HL_5TBW_118 | 1/AR/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_5TBW_119 | 1/AR/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_5TBW_120 | 1/AR/278:287 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_5TBW_121 | 1/AR/303:312 | No text annotation Not in a motif group | homologous HL_5TBW_009 HL_12078.2 | |
| HL_5TBW_122 | 1/AR/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.1 | |
| HL_5TBW_123 | 1/AR/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.1 | |
| HL_5TBW_124 | 1/AR/541:550 | No text annotation Not in a motif group | ||
| HL_5TBW_125 | 1/AR/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_5TBW_126 | 1/AR/640:649 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_89380.2 | |
| HL_5TBW_127 | 1/AR/686:694 | No text annotation Not in a motif group | homologous HL_5TBW_015 HL_03345.1 | |
| HL_5TBW_128 | 1/AR/707:712 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_42097.1 | |
| HL_5TBW_129 | 1/AR/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_5TBW_130 | 1/AR/763:768 | No text annotation Not in a motif group | homologous HL_5TBW_018 HL_34168.2 | |
| HL_5TBW_131 | 1/AR/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.1 | |
| HL_5TBW_132 | 1/AR/876:885 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.6 | |
| HL_5TBW_133 | 1/AR/910:918 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_5TBW_134 | 1/AR/958:963 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_94803.1 | |
| HL_5TBW_136 | 1/AR/1076:1083 | No text annotation Not in a motif group | homologous HL_5TBW_024 HL_71554.2 | |
| HL_5TBW_137 | 1/AR/1126:1132 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.1 | |
| HL_5TBW_138 | 1/AR/1148:1155 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_5TBW_139 | 1/AR/1239:1249 | No text annotation Not in a motif group | homologous HL_8C3A_027 HL_07145.1 | |
| HL_5TBW_140 | 1/AR/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_5TBW_141 | 1/AR/1347:1357 | No text annotation Not in a motif group | homologous HL_5TBW_029 HL_89098.1 | |
| HL_5TBW_142 | 1/AR/1403:1408 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_42097.1 | |
| HL_5TBW_143 | 1/AR/1462:1470 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_89380.2 | |
| HL_5TBW_144 | 1/AR/1506:1512 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_5TBW_145 | 1/AR/1544:1549 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_76539.2 | |
| HL_5TBW_147 | 1/AR/1599:1608 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_5TBW_148 | 1/AR/1634:1639 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_42097.1 | |
| HL_5TBW_149 | 1/AR/1680:1688 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_60812.1 | |
| HL_5TBW_150 | 1/AR/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.2 | |
| HL_5TBW_152 | 1/AR/1792:1796 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_38927.2 | |
| HL_5TBW_153 | 1/AR/1844:1851 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.2 | |
| HL_5TBW_154 | 1/AR/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_5TBW_155 | 1/AR/1923:1928 | UNCG Not in a motif group | geometric HL_4V9F_044 HL_03562.2 | |
| HL_5TBW_156 | 1/AR/1953:2094 | No text annotation Not in a motif group | geometric HL_5TBW_044 HL_09829.1 | |
| HL_5TBW_157 | 1/AR/2110:2114 | No text annotation Not in a motif group | homologous HL_5TBW_045 HL_20062.1 | |
| HL_5TBW_158 | 1/AR/2135:2145 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.5 | |
| HL_5TBW_159 | 1/AR/2164:2170 | GNRA Not in a motif group | homologous HL_5TBW_047 HL_42097.1 | |
| HL_5TBW_160 | 1/AR/2220:2225 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_42097.1 | |
| HL_5TBW_161 | 1/AR/2253:2263 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_5TBW_162 | 1/AR/2292:2300 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_51824.1 | |
| HL_5TBW_163 | 1/AR/2369:2378 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.6 | |
| HL_5TBW_165 | 1/AR/2534:2545 | No text annotation Not in a motif group | ||
| HL_5TBW_166 | 1/AR/2567:2574 | No text annotation Not in a motif group | ||
| HL_5TBW_167 | 1/AR/2616:2624 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_53171.2 | |
| HL_5TBW_168 | 1/AR/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_5TBW_169 | 1/AR/2673:2681 | No text annotation Not in a motif group | homologous HL_5TBW_056 HL_76406.4 | |
| HL_5TBW_170 | 1/AR/2693:2700 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.2 | |
| HL_5TBW_171 | 1/AR/2724:2732 | No text annotation Not in a motif group | homologous HL_5TBW_058 HL_92229.2 | |
| HL_5TBW_172 | 1/AR/2744:2749 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_42097.1 | |
| HL_5TBW_173 | 1/AR/2776:2784 | No text annotation Not in a motif group | homologous HL_5TBW_060 HL_96598.1 | |
| HL_5TBW_174 | 1/AR/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_5TBW_175 | 1/AR/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_5TBW_176 | 1/AR/2920:2926 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_5TBW_177 | 1/AR/2963:2968 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.1 | |
| HL_5TBW_178 | 1/AR/3025:3030 | GNRA Not in a motif group | homologous HL_5TBW_065 HL_42097.1 | |
| HL_5TBW_179 | 1/AR/3068:3073 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_46680.1 | |
| HL_5TBW_180 | 1/AR/3110:3124 | No text annotation Not in a motif group | homologous HL_5TBW_067 HL_56677.7 | |
| HL_5TBW_181 | 1/AR/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
| HL_5TBW_182 | 1/AR/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_5TBW_183 | 1/AR/3303:3311 | No text annotation Not in a motif group | homologous HL_5TBW_070 HL_27930.1 | |
| HL_5TBW_184 | 1/AR/3350:3353 | No text annotation Not in a motif group | homologous HL_5TBW_071 HL_53837.1 | |
| HL_5TBW_185 | 1/AS/36:41 | No text annotation HL_87939.1 | ||
| HL_5TBW_186 | 1/AS/88:93 | GNRA HL_42097.1 | ||
| HL_5TBW_187 | 1/AT/73:78 | Other HL Not in a motif group | geometric HL_5TBW_074 HL_50142.2 | |
| HL_5TBW_188 | 1/AT/108:114 | No text annotation Not in a motif group | geometric HL_5TBW_075 HL_87939.1 | |
| HL_5TBW_189 | 1/AT/124:129 | No text annotation Not in a motif group | geometric HL_5TBW_076 HL_96851.2 | |
| HL_5TBW_190 | 1/sR/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_5TBW_191 | 1/sR/70:81 | No text annotation Not in a motif group | homologous HL_4V88_187 HL_40069.1 | |
| HL_5TBW_192 | 1/sR/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_5TBW_194 | 1/sR/243:250 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V88_191 HL_27930.1 | |
| HL_5TBW_195 | 1/sR/276:279 | No text annotation Not in a motif group | homologous HL_4V88_192 HL_53837.1 | |
| HL_5TBW_196 | 1/sR/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_5TBW_197 | 1/sR/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_5TBW_198 | 1/sR/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_5TBW_199 | 1/sR/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_5TBW_200 | 1/sR/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_5TBW_201 | 1/sR/483:504 | No text annotation Not in a motif group | ||
| HL_5TBW_202 | 1/sR/520:532 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 | |
| HL_5TBW_203 | 1/sR/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_5TBW_205 | 1/sR/714:724 | No text annotation Not in a motif group | ||
| HL_5TBW_206 | 1/sR/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_5TBW_207 | 1/sR/777:783 | No text annotation Not in a motif group | homologous HL_4V88_204 HL_97896.2 | |
| HL_5TBW_208 | 1/sR/829:843 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_5TBW_209 | 1/sR/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_5TBW_210 | 1/sR/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_5TBW_211 | 1/sR/997:1007 | No text annotation Not in a motif group | geometric HL_4V88_208 HL_12326.1 | |
| HL_5TBW_212 | 1/sR/1055:1064 | No text annotation Not in a motif group | homologous HL_4V88_209 HL_32255.1 | |
| HL_5TBW_213 | 1/sR/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_5TBW_214 | 1/sR/1121:1126 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_5TBW_215 | 1/sR/1188:1197 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_5TBW_216 | 1/sR/1238:1247 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_5TBW_217 | 1/sR/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_5TBW_218 | 1/sR/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_5TBW_219 | 1/sR/1359:1364 | No text annotation Not in a motif group | homologous HL_4V88_216 HL_10278.1 | |
| HL_5TBW_220 | 1/sR/1396:1402 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_5TBW_221 | 1/sR/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_5TBW_222 | 1/sR/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_5TBW_223 | 1/sR/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_5TBW_225 | 1/sR/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5TBW_034 | No text annotation | ||
| HL_5TBW_081 | No text annotation | ||
| HL_5TBW_111 | No text annotation | ||
| HL_5TBW_135 | GNRA | ||
| HL_5TBW_146 | No text annotation | ||
| HL_5TBW_151 | No text annotation | ||
| HL_5TBW_164 | No text annotation | ||
| HL_5TBW_193 | No text annotation | ||
| HL_5TBW_204 | No text annotation | ||
| HL_5TBW_224 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5TBW_001 | 1/1/3:4, 1/4/155:156 | No text annotation Not in a motif group | ||
| IL_5TBW_002 | 1/1/7:8, 1/4/150:152 | Single bulged C IL_61258.12 | ||
| IL_5TBW_003 | 1/1/13:15, 1/4/144:145 | Single bulged U IL_83039.13 | ||
| IL_5TBW_004 | 1/1/27:28, 1/1/56:58 | Single stack bend IL_76488.2 | ||
| IL_5TBW_005 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS IL_35728.2 | ||
| IL_5TBW_006 | 1/1/82:89, 1/1/97:103 | No text annotation IL_88613.1 | ||
| IL_5TBW_007 | 1/1/123:124, 1/1/144:149 | No text annotation IL_19724.2 | ||
| IL_5TBW_008 | 1/1/125:127, 1/1/141:143 | No text annotation IL_95997.1 | ||
| IL_5TBW_009 | 1/1/163:165, 1/1/257:258 | Single stack bend IL_76488.2 | ||
| IL_5TBW_010 | 1/1/169:170, 1/1/248:253 | No text annotation IL_74684.1 | ||
| IL_5TBW_011 | 1/1/177:179, 1/1/237:241 | Major groove platform with extra pair IL_63450.2 | ||
| IL_5TBW_012 | 1/1/189:191, 1/1/204:205 | Single bulged U IL_83039.13 | ||
| IL_5TBW_013 | 1/1/337:339, 1/4/25:26 | Single bulged A IL_37497.2 | ||
| IL_5TBW_014 | 1/1/376:379, 1/1/390:403 | No text annotation IL_60992.6 | ||
| IL_5TBW_015 | 1/1/404:410, 1/4/13:19 | Triple sheared with non-canonical cWW IL_66414.6 | ||
| IL_5TBW_016 | 1/1/429:431, 1/1/628:630 | No text annotation IL_51629.2 | ||
| IL_5TBW_017 | 1/1/435:495, 1/1/618:624 | No text annotation IL_33557.1 | ||
| IL_5TBW_018 | 1/1/512:513, 1/1/577:579 | Single bulged A IL_37497.2 | ||
| IL_5TBW_019 | 1/1/517:525, 1/1/567:573 | No text annotation IL_23992.1 | ||
| IL_5TBW_020 | 1/1/531:538, 1/1/553:561 | No text annotation IL_07703.1 | ||
| IL_5TBW_021 | 1/1/668:670, 1/1/792:794 | No text annotation IL_95997.1 | ||
| IL_5TBW_022 | 1/1/680:684, 1/1/696:700 | No text annotation IL_74284.1 | ||
| IL_5TBW_023 | 1/1/725:728, 1/1/741:745 | UAA/GAN IL_07235.1 | ||
| IL_5TBW_024 | 1/1/752:753, 1/1/779:781 | Single bulged A IL_37497.2 | ||
| IL_5TBW_025 | 1/1/755:756, 1/1/775:777 | Single bulged U IL_83039.13 | ||
| IL_5TBW_026 | 1/1/758:763, 1/1/768:773 | No text annotation IL_19954.2 | ||
| IL_5TBW_027 | 1/1/803:805, 1/1/938:940 | No text annotation IL_95997.1 | ||
| IL_5TBW_028 | 1/1/805:809, 1/1/931:938 | No text annotation IL_17470.6 | ||
| IL_5TBW_029 | 1/1/833:834, 1/1/859:861 | Single bulged G IL_00225.2 | ||
| IL_5TBW_030 | 1/1/834:838, 1/1/855:859 | Triple sheared IL_56467.8 | ||
| IL_5TBW_031 | 1/1/869:872, 1/1/888:890 | Major groove platform with extra cWW IL_05564.2 | ||
| IL_5TBW_032 | 1/1/873:875, 1/1/886:887 | Single bulged U IL_83039.13 | ||
| IL_5TBW_033 | 1/1/907:909, 1/1/919:923 | Multiple bulged bases IL_90991.6 | ||
| IL_5TBW_034 | 1/1/954:956, 1/1/965:967 | No text annotation IL_95997.1 | ||
| IL_5TBW_035 | 1/1/969:970, 1/1/1111:1113 | Single stack bend IL_76488.2 | ||
| IL_5TBW_036 | 1/1/977:981, 1/1/1102:1104 | No text annotation IL_67474.4 | ||
| IL_5TBW_037 | 1/1/983:985, 1/1/1099:1100 | Single bulged G IL_00225.2 | ||
| IL_5TBW_038 | 1/1/991:997, 1/1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge IL_93830.3 | ||
| IL_5TBW_039 | 1/1/997:998, 1/1/1050:1052 | Minor groove platform IL_42622.2 | ||
| IL_5TBW_040 | 1/1/999:1004, 1/1/1046:1049 | C-loop IL_02509.1 | ||
| IL_5TBW_041 | 1/1/1006:1009, 1/1/1041:1044 | Tandem non-canonical cWW pairs IL_30621.2 | ||
| IL_5TBW_042 | 1/1/1009:1011, 1/1/1039:1041 | No text annotation IL_95997.1 | ||
| IL_5TBW_043 | 1/1/1013:1018, 1/1/1034:1037 | Other IL IL_71110.1 | ||
| IL_5TBW_044 | 1/1/1069:1071, 1/1/1087:1089 | No text annotation IL_95997.1 | ||
| IL_5TBW_045 | 1/1/1074:1076, 1/1/1083:1084 | Single bulged A IL_37497.2 | ||
| IL_5TBW_046 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation IL_95997.1 | ||
| IL_5TBW_047 | 1/1/1123:1125, 1/1/1133:1135 | Isolated cWS basepair IL_52767.2 | ||
| IL_5TBW_048 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN IL_89002.2 | ||
| IL_5TBW_049 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot IL_15861.7 | ||
| IL_5TBW_050 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U IL_83039.13 | ||
| IL_5TBW_051 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation IL_27086.1 | ||
| IL_5TBW_052 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation IL_53762.1 | ||
| IL_5TBW_053 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U IL_83039.13 | ||
| IL_5TBW_054 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn IL_90538.4 | ||
| IL_5TBW_055 | 1/1/1232:1239, 1/1/1249:1256 | No text annotation IL_12750.1 | ||
| IL_5TBW_056 | 1/1/1262:1266, 1/1/1275:1277 | Major groove platform with extra cWW IL_05564.2 | ||
| IL_5TBW_057 | 1/1/1376:1378, 1/1/1428:1431 | Isolated cWS basepair IL_52767.2 | ||
| IL_5TBW_058 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A IL_37497.2 | ||
| IL_5TBW_059 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn IL_70923.2 | ||
| IL_5TBW_060 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A IL_37497.2 | ||
| IL_5TBW_061 | 1/1/1444:1450, 1/1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge IL_76042.2 | ||
| IL_5TBW_062 | 1/1/1500:1505, 1/1/1513:1516 | No text annotation IL_93630.2 | ||
| IL_5TBW_063 | 1/1/1532:1536, 1/1/1585:1590 | UAA/GAN IL_89002.2 | ||
| IL_5TBW_064 | 1/1/1618:1621, 1/1/1824:1826 | Other IL IL_84698.1 | ||
| IL_5TBW_065 | 1/1/1623:1626, 1/1/1817:1822 | Multiple bulged bases with near cWW IL_58686.2 | ||
| IL_5TBW_066 | 1/1/1627:1631, 1/1/1811:1816 | No text annotation IL_48431.1 | ||
| IL_5TBW_067 | 1/1/1645:1649, 1/1/1806:1810 | Triple sheared IL_56467.8 | ||
| IL_5TBW_068 | 1/1/1661:1663, 1/1/1786:1788 | No text annotation IL_95997.1 | ||
| IL_5TBW_069 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C IL_61258.12 | ||
| IL_5TBW_070 | 1/1/1670:1671, 1/1/1776:1778 | Single stack bend IL_76488.2 | ||
| IL_5TBW_071 | 1/1/1694:1698, 1/1/1747:1752 | No text annotation IL_69313.1 | ||
| IL_5TBW_072 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation IL_39753.1 | ||
| IL_5TBW_073 | 1/1/1711:1717, 1/1/1727:1733 | Kink-turn IL_60192.2 | ||
| IL_5TBW_074 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation IL_49460.2 | ||
| IL_5TBW_075 | 1/1/1895:1897, 1/1/2338:2340 | Isolated tWW turn IL_54997.7 | ||
| IL_5TBW_076 | 1/1/1898:1901, 1/1/2336:2337 | Major groove platform; stack outside cWW IL_50694.2 | ||
| IL_5TBW_077 | 1/1/1901:1906, 1/1/2333:2336 | Intercalated tWH IL_82842.2 | ||
| IL_5TBW_078 | 1/1/1918:1923, 1/1/1928:1934 | tSH-tSH-tHH-tHS IL_65969.2 | ||
| IL_5TBW_079 | 1/1/1940:1942, 1/1/2106:2108 | No text annotation IL_95997.1 | ||
| IL_5TBW_080 | 1/1/1947:1948, 1/1/2098:2101 | No text annotation IL_74125.1 | ||
| IL_5TBW_081 | 1/1/1951:1953, 1/1/2094:2095 | Single stack bend IL_76488.2 | ||
| IL_5TBW_082 | 1/1/2128:2129, 1/1/2323:2325 | Single bulged A IL_37497.2 | ||
| IL_5TBW_083 | 1/1/2156:2161, 1/1/2173:2180 | Kink-turn related IL_64509.1 | ||
| IL_5TBW_084 | 1/1/2196:2199, 1/1/2245:2246 | Major groove outside cWW, minor groove, intercalation pocket IL_88739.1 | ||
| IL_5TBW_085 | 1/1/2200:2201, 1/1/2241:2244 | Major groove outside cWW, minor groove, intercalation pocket IL_16396.2 | ||
| IL_5TBW_086 | 1/1/2204:2206, 1/1/2237:2238 | Single bulged U IL_83039.13 | ||
| IL_5TBW_087 | 1/1/2206:2210, 1/1/2235:2237 | Major groove platform with extra pair IL_63450.2 | ||
| IL_5TBW_088 | 1/1/2211:2217, 1/1/2228:2234 | No text annotation IL_36973.6 | ||
| IL_5TBW_089 | 1/1/2276:2277, 1/1/2307:2310 | Multiple bulged bases IL_59677.2 | ||
| IL_5TBW_090 | 1/1/2277:2288, 1/1/2304:2307 | No text annotation IL_81589.2 | ||
| IL_5TBW_091 | 1/1/2391:2394, 1/1/2986:2988 | Major groove platform with extra pair IL_63450.2 | ||
| IL_5TBW_092 | 1/1/2396:2398, 1/1/2981:2984 | Minor groove platform with intercalation IL_54678.5 | ||
| IL_5TBW_093 | 1/1/2409:2411, 1/1/2811:2812 | Single bulged U IL_83039.13 | ||
| IL_5TBW_094 | 1/1/2412:2413, 1/1/2807:2810 | Minor groove platform IL_42622.2 | ||
| IL_5TBW_095 | 1/1/2423:2425, 1/1/2604:2607 | Isolated tHS basepair with bulges IL_38958.7 | ||
| IL_5TBW_096 | 1/1/2520:2526, 1/1/2584:2587 | No text annotation IL_74114.1 | ||
| IL_5TBW_097 | 1/1/2529:2563, 1/1/2578:2581 | No text annotation IL_46461.1 | ||
| IL_5TBW_098 | 1/1/2614:2615, 1/1/2625:2627 | Single bulged A IL_37497.2 | ||
| IL_5TBW_099 | 1/1/2666:2668, 1/1/2686:2690 | Isolated tHS basepair with bulges IL_38958.7 | ||
| IL_5TBW_100 | 1/1/2718:2721, 1/1/2735:2738 | Tandem non-canonical cWW pairs IL_30621.2 | ||
| IL_5TBW_101 | 1/1/2770:2773, 1/1/2787:2788 | Single stack bend with bulge IL_76488.2 | ||
| IL_5TBW_102 | 1/1/2823:2824, 1/1/2865:2867 | Major groove platform IL_27635.1 | ||
| IL_5TBW_103 | 1/1/2824:2826, 1/1/2863:2865 | No text annotation IL_95997.1 | ||
| IL_5TBW_104 | 1/1/2826:2828, 1/1/2862:2863 | Major groove platform IL_76223.2 | ||
| IL_5TBW_105 | 1/1/2828:2830, 1/1/2858:2862 | Major groove minor groove platform with extra cWW IL_92788.2 | ||
| IL_5TBW_106 | 1/1/2835:2839, 1/1/2849:2853 | Triple sheared IL_56467.8 | ||
| IL_5TBW_107 | 1/1/2876:2877, 1/1/2949:2951 | Major groove platform IL_76223.2 | ||
| IL_5TBW_108 | 1/1/2879:2881, 1/1/2943:2947 | Isolated non-canonical cWW with bulges IL_90933.2 | ||
| IL_5TBW_109 | 1/1/2881:2882, 1/1/2940:2943 | Multiple bulged bases IL_71530.2 | ||
| IL_5TBW_110 | 1/1/2889:2891, 1/1/2912:2914 | No text annotation IL_51629.2 | ||
| IL_5TBW_111 | 1/1/2891:2892, 1/1/2909:2912 | Minor groove platform with intercalation IL_95601.3 | ||
| IL_5TBW_112 | 1/1/2918:2920, 1/1/2926:2928 | CA cWW IL_95997.1 | ||
| IL_5TBW_113 | 1/1/2960:2961, 1/1/2970:2972 | Single bulged A IL_37497.2 | ||
| IL_5TBW_114 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared IL_09705.9 | ||
| IL_5TBW_115 | 1/1/3012:3014, 1/1/3040:3042 | No text annotation IL_95997.1 | ||
| IL_5TBW_116 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge IL_04346.7 | ||
| IL_5TBW_117 | 1/1/3047:3051, 1/1/3091:3094 | Major groove minor groove platform with tHH IL_37712.2 | ||
| IL_5TBW_118 | 1/1/3054:3059, 1/1/3084:3088 | UAA/GAN related IL_17136.1 | ||
| IL_5TBW_119 | 1/1/3063:3064, 1/1/3077:3080 | Multiple bulged bases IL_71530.2 | ||
| IL_5TBW_120 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN IL_89002.2 | ||
| IL_5TBW_121 | 1/1/3162:3166, 1/1/3284:3288 | No text annotation IL_05145.2 | ||
| IL_5TBW_122 | 1/1/3168:3170, 1/1/3280:3282 | No text annotation IL_95997.1 | ||
| IL_5TBW_123 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A IL_37497.2 | ||
| IL_5TBW_124 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation IL_15174.1 | ||
| IL_5TBW_125 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U IL_83039.13 | ||
| IL_5TBW_126 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation IL_19389.6 | ||
| IL_5TBW_127 | 1/1/3233:3235, 1/1/3252:3254 | No text annotation IL_95997.1 | ||
| IL_5TBW_128 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs IL_30621.2 | ||
| IL_5TBW_129 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs IL_30621.2 | ||
| IL_5TBW_130 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U IL_83039.13 | ||
| IL_5TBW_131 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U IL_83039.13 | ||
| IL_5TBW_132 | 1/1/3328:3330, 1/1/3373:3378 | Isolated non-canonical cWW with bulges IL_90933.2 | ||
| IL_5TBW_133 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation IL_83162.5 | ||
| IL_5TBW_134 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U IL_83039.13 | ||
| IL_5TBW_135 | 1/1/3342:3345, 1/1/3360:3363 | tWS-tSW IL_09705.9 | ||
| IL_5TBW_136 | 1/1/3349:3350, 1/1/3353:3356 | Multiple bulged bases IL_59677.2 | ||
| IL_5TBW_137 | 1/3/15:16, 1/3/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_5TBW_138 | 1/3/21:27, 1/3/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_5TBW_139 | 1/3/28:29, 1/3/49:52 | Minor groove platform Not in a motif group | geometric IL_5TBW_374 IL_63797.2 | |
| IL_5TBW_140 | 1/3/29:30, 1/3/47:49 | Single stack bend Not in a motif group | homologous IL_5TBW_375 IL_76488.2 | |
| IL_5TBW_141 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
| IL_5TBW_142 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_5TBW_143 | 1/3/84:87, 1/3/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_5TBW_144 | 1/4/44:64, 1/4/96:100 | No text annotation IL_44998.1 | ||
| IL_5TBW_145 | 1/4/64:66, 1/4/93:96 | Isolated non-canonical cWW with bulges IL_82068.2 | ||
| IL_5TBW_146 | 1/4/68:69, 1/4/89:91 | Single bulged U IL_83039.13 | ||
| IL_5TBW_147 | 1/4/69:73, 1/4/78:89 | No text annotation IL_39287.1 | ||
| IL_5TBW_148 | 1/A/24:26, 1/A/600:601 | Single bulged C Not in a motif group | geometric IL_4V88_384 IL_61258.12 | |
| IL_5TBW_149 | 1/A/35:37, 1/A/471:473 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_5TBW_150 | 1/A/37:41, 1/A/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_5TBW_152 | 1/A/50:52, 1/A/428:429 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_93353.1 | |
| IL_5TBW_153 | 1/A/58:63, 1/A/87:89 | No text annotation Not in a motif group | geometric IL_4V88_389 IL_95004.1 | |
| IL_5TBW_154 | 1/A/64:69, 1/A/82:86 | No text annotation Not in a motif group | geometric IL_4V88_390 IL_77691.1 | |
| IL_5TBW_155 | 1/A/109:112, 1/A/302:305 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_391 IL_30621.2 | |
| IL_5TBW_156 | 1/A/113:116, 1/A/300:301 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_5TBW_157 | 1/A/117:122, 1/A/295:299 | No text annotation Not in a motif group | geometric IL_4V88_393 IL_64181.2 | |
| IL_5TBW_159 | 1/A/150:152, 1/A/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_012 IL_51629.2 | |
| IL_5TBW_160 | 1/A/186:189, 1/A/196:199 | Double sheared Not in a motif group | geometric IL_4V88_396 IL_09705.9 | |
| IL_5TBW_161 | 1/A/204:206, 1/A/259:263 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V88_397 IL_05564.2 | |
| IL_5TBW_162 | 1/A/206:208, 1/A/257:259 | No text annotation Not in a motif group | geometric IL_4V88_398 IL_95997.1 | |
| IL_5TBW_163 | 1/A/265:267, 1/A/288:289 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_37497.2 | |
| IL_5TBW_164 | 1/A/270:273, 1/A/283:285 | No text annotation Not in a motif group | geometric IL_4V88_400 IL_47298.1 | |
| IL_5TBW_165 | 1/A/274:276, 1/A/279:282 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_5TBW_166 | 1/A/311:316, 1/A/348:355 | Kink-turn with non-sequential stacking Not in a motif group | geometric IL_4V88_402 IL_45067.2 | |
| IL_5TBW_168 | 1/A/363:365, 1/A/376:381 | No text annotation Not in a motif group | geometric IL_4V88_404 IL_11347.1 | |
| IL_5TBW_169 | 1/A/389:391, 1/A/406:408 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_405 IL_51629.2 | |
| IL_5TBW_170 | 1/A/411:413, 1/A/420:422 | Isolated near basepair Not in a motif group | geometric IL_4V88_406 IL_52767.2 | |
| IL_5TBW_171 | 1/A/439:441, 1/A/463:464 | Single bulged U Not in a motif group | geometric IL_4V88_407 IL_83039.13 | |
| IL_5TBW_172 | 1/A/443:448, 1/A/458:461 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_93630.2 | |
| IL_5TBW_173 | 1/A/479:486, 1/A/501:509 | No text annotation Not in a motif group | ||
| IL_5TBW_174 | 1/A/517:518, 1/A/533:535 | Minor groove platform Not in a motif group | geometric IL_4LFB_054 IL_93353.1 | |
| IL_5TBW_175 | 1/A/518:520, 1/A/532:533 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_5TBW_176 | 1/A/550:557, 1/A/587:588 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_5TBW_177 | 1/A/557:559, 1/A/586:587 | Single bulged U Not in a motif group | geometric IL_4V88_414 IL_83039.13 | |
| IL_5TBW_178 | 1/A/562:568, 1/A/575:583 | No text annotation Not in a motif group | homologous IL_8C3A_425 IL_55871.1 | |
| IL_5TBW_179 | 1/A/616:622, 1/A/1104:1105 | No text annotation Not in a motif group | geometric IL_4V88_416 IL_69996.1 | |
| IL_5TBW_180 | 1/A/624:626, 1/A/973:975 | No text annotation Not in a motif group | geometric IL_4V88_417 IL_95997.1 | |
| IL_5TBW_181 | 1/A/627:631, 1/A/968:972 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_418 IL_17136.1 | |
| IL_5TBW_182 | 1/A/646:648, 1/A/686:688 | No text annotation Not in a motif group | geometric IL_4V88_419 IL_95997.1 | |
| IL_5TBW_183 | 1/A/652:658, 1/A/676:682 | No text annotation Not in a motif group | ||
| IL_5TBW_189 | 1/A/867:870, 1/A/957:961 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_5TBW_190 | 1/A/871:874, 1/A/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_5TBW_191 | 1/A/874:878, 1/A/950:953 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_5TBW_192 | 1/A/885:888, 1/A/924:927 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_432 IL_30621.2 | |
| IL_5TBW_193 | 1/A/893:895, 1/A/917:919 | No text annotation Not in a motif group | geometric IL_4V88_433 IL_95997.1 | |
| IL_5TBW_194 | 1/A/895:899, 1/A/910:917 | Kink-turn Not in a motif group | geometric IL_4V88_434 IL_45067.2 | |
| IL_5TBW_195 | 1/A/985:990, 1/A/1014:1016 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_5TBW_196 | 1/A/990:994, 1/A/1010:1014 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_436 IL_17136.1 | |
| IL_5TBW_197 | 1/A/1034:1036, 1/A/1095:1101 | No text annotation Not in a motif group | geometric IL_4V88_437 IL_19557.3 | |
| IL_5TBW_198 | 1/A/1041:1044, 1/A/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.2 | |
| IL_5TBW_199 | 1/A/1050:1053, 1/A/1066:1068 | Isolated cWH basepair Not in a motif group | geometric IL_406D_002 IL_51629.2 | |
| IL_5TBW_200 | 1/A/1111:1118, 1/A/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | geometric IL_4V88_440 IL_24606.2 | |
| IL_5TBW_201 | 1/A/1146:1147, 1/A/1630:1632 | Single bulged A Not in a motif group | geometric IL_4V88_441 IL_37497.2 | |
| IL_5TBW_202 | 1/A/1149:1151, 1/A/1627:1628 | Single bulged G Not in a motif group | geometric IL_4V88_442 IL_00225.2 | |
| IL_5TBW_203 | 1/A/1157:1160, 1/A/1617:1621 | C-loop Not in a motif group | geometric IL_4V88_443 IL_63596.6 | |
| IL_5TBW_204 | 1/A/1173:1175, 1/A/1464:1466 | No text annotation Not in a motif group | geometric IL_4V88_444 IL_95997.1 | |
| IL_5TBW_205 | 1/A/1178:1179, 1/A/1459:1461 | Minor groove platform Not in a motif group | geometric IL_4V88_445 IL_42622.2 | |
| IL_5TBW_206 | 1/A/1213:1215, 1/A/1448:1450 | No text annotation Not in a motif group | geometric IL_4V88_446 IL_95997.1 | |
| IL_5TBW_207 | 1/A/1223:1230, 1/A/1257:1260 | No text annotation Not in a motif group | ||
| IL_5TBW_208 | 1/A/1230:1233, 1/A/1252:1257 | No text annotation Not in a motif group | ||
| IL_5TBW_209 | 1/A/1234:1236, 1/A/1249:1251 | No text annotation Not in a motif group | geometric IL_4V88_448 IL_10023.1 | |
| IL_5TBW_210 | 1/A/1268:1270, 1/A/1440:1441 | Single bulged U Not in a motif group | geometric IL_4V88_449 IL_83039.13 | |
| IL_5TBW_211 | 1/A/1272:1276, 1/A/1436:1438 | Isolated cWS basepair Not in a motif group | geometric IL_4V88_450 IL_76319.2 | |
| IL_5TBW_212 | 1/A/1276:1278, 1/A/1430:1436 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_451 IL_92788.2 | |
| IL_5TBW_213 | 1/A/1280:1281, 1/A/1426:1428 | Single bulged A Not in a motif group | geometric IL_4V88_452 IL_37497.2 | |
| IL_5TBW_214 | 1/A/1290:1292, 1/A/1323:1325 | No text annotation Not in a motif group | geometric IL_5UNE_003 IL_95997.1 | |
| IL_5TBW_215 | 1/A/1306:1308, 1/A/1317:1318 | Minor groove platform Not in a motif group | geometric IL_4V88_454 IL_93353.1 | |
| IL_5TBW_216 | 1/A/1339:1342, 1/A/1383:1385 | No text annotation Not in a motif group | geometric IL_4V88_455 IL_10023.1 | |
| IL_5TBW_217 | 1/A/1345:1349, 1/A/1376:1380 | No text annotation Not in a motif group | ||
| IL_5TBW_218 | 1/A/1352:1355, 1/A/1368:1373 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_5TBW_219 | 1/A/1389:1391, 1/A/1407:1412 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_458 IL_58032.1 | |
| IL_5TBW_220 | 1/A/1488:1494, 1/A/1513:1518 | No text annotation Not in a motif group | geometric IL_4V88_460 IL_75461.4 | |
| IL_5TBW_221 | 1/A/1495:1498, 1/A/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_461 IL_30621.2 | |
| IL_5TBW_222 | 1/A/1540:1545, 1/A/1566:1571 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_5TBW_223 | 1/A/1636:1638, 1/A/1764:1767 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_5TBW_224 | 1/A/1638:1641, 1/A/1760:1764 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5TBW_225 | 1/A/1642:1644, 1/A/1757:1759 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_5TBW_226 | 1/A/1644:1647, 1/A/1753:1757 | Non canonical cWW and near pair Not in a motif group | geometric IL_4V88_466 IL_42334.1 | |
| IL_5TBW_227 | 1/A/1650:1652, 1/A/1748:1750 | AA cWW Not in a motif group | geometric IL_5ED1_002 IL_95997.1 | |
| IL_5TBW_228 | 1/A/1653:1656, 1/A/1744:1747 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_5TBW_229 | 1/A/1656:1658, 1/A/1743:1744 | Single bulged U Not in a motif group | geometric IL_6CZR_156 IL_83039.13 | |
| IL_5TBW_230 | 1/A/1665:1667, 1/A/1734:1736 | No text annotation Not in a motif group | geometric IL_4V88_470 IL_51629.2 | |
| IL_5TBW_231 | 1/A/1669:1672, 1/A/1729:1732 | Double sheared Not in a motif group | geometric IL_4V88_471 IL_09705.9 | |
| IL_5TBW_232 | 1/A/1672:1674, 1/A/1727:1729 | No text annotation Not in a motif group | geometric IL_4V88_472 IL_95997.1 | |
| IL_5TBW_233 | 1/A/1675:1678, 1/A/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_5TBW_234 | 1/A/1678:1682, 1/A/1719:1723 | Triple sheared Not in a motif group | geometric IL_4V88_474 IL_56467.8 | |
| IL_5TBW_237 | 1/AR/3:4, 1/AT/155:156 | No text annotation Not in a motif group | ||
| IL_5TBW_238 | 1/AR/7:8, 1/AT/150:152 | Single bulged C Not in a motif group | homologous IL_5TBW_002 IL_61258.12 | |
| IL_5TBW_239 | 1/AR/13:15, 1/AT/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_5TBW_240 | 1/AR/27:28, 1/AR/56:58 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_76488.2 | |
| IL_5TBW_241 | 1/AR/31:38, 1/AR/45:53 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
| IL_5TBW_242 | 1/AR/82:89, 1/AR/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_5TBW_243 | 1/AR/123:124, 1/AR/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_5TBW_244 | 1/AR/125:127, 1/AR/141:143 | No text annotation Not in a motif group | homologous IL_5TBW_008 IL_95997.1 | |
| IL_5TBW_245 | 1/AR/163:165, 1/AR/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_5TBW_246 | 1/AR/169:170, 1/AR/248:253 | No text annotation Not in a motif group | homologous IL_5TBW_010 IL_74684.1 | |
| IL_5TBW_247 | 1/AR/177:179, 1/AR/237:241 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_011 IL_63450.2 | |
| IL_5TBW_248 | 1/AR/189:191, 1/AR/204:205 | Single bulged U Not in a motif group | homologous IL_5TBW_012 IL_83039.13 | |
| IL_5TBW_249 | 1/AR/337:339, 1/AT/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_5TBW_250 | 1/AR/376:379, 1/AR/390:403 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_5TBW_251 | 1/AR/404:410, 1/AT/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_5TBW_252 | 1/AR/429:431, 1/AR/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_5TBW_253 | 1/AR/435:495, 1/AR/618:624 | No text annotation Not in a motif group | homologous IL_5TBW_017 IL_33557.1 | |
| IL_5TBW_254 | 1/AR/512:513, 1/AR/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.2 | |
| IL_5TBW_255 | 1/AR/517:525, 1/AR/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_5TBW_256 | 1/AR/531:538, 1/AR/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_5TBW_257 | 1/AR/668:670, 1/AR/792:794 | No text annotation Not in a motif group | homologous IL_5TBW_021 IL_95997.1 | |
| IL_5TBW_258 | 1/AR/680:684, 1/AR/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_5TBW_259 | 1/AR/725:728, 1/AR/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.1 | |
| IL_5TBW_260 | 1/AR/752:753, 1/AR/779:781 | Single bulged A Not in a motif group | homologous IL_5TBW_024 IL_37497.2 | |
| IL_5TBW_261 | 1/AR/755:756, 1/AR/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.13 | |
| IL_5TBW_262 | 1/AR/758:763, 1/AR/768:773 | No text annotation Not in a motif group | geometric IL_5TBW_026 IL_19954.2 | |
| IL_5TBW_263 | 1/AR/803:805, 1/AR/938:940 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_95997.1 | |
| IL_5TBW_264 | 1/AR/805:809, 1/AR/931:938 | No text annotation Not in a motif group | homologous IL_5TBW_028 IL_17470.6 | |
| IL_5TBW_265 | 1/AR/833:834, 1/AR/859:861 | Single bulged G Not in a motif group | homologous IL_5TBW_029 IL_00225.2 | |
| IL_5TBW_266 | 1/AR/834:838, 1/AR/855:859 | Triple sheared Not in a motif group | geometric IL_5TBW_030 IL_56467.8 | |
| IL_5TBW_267 | 1/AR/869:872, 1/AR/888:890 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_05564.2 | |
| IL_5TBW_268 | 1/AR/873:875, 1/AR/886:887 | Single bulged U Not in a motif group | homologous IL_5TBW_032 IL_83039.13 | |
| IL_5TBW_269 | 1/AR/907:909, 1/AR/919:923 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.6 | |
| IL_5TBW_270 | 1/AR/954:956, 1/AR/965:967 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_95997.1 | |
| IL_5TBW_271 | 1/AR/969:970, 1/AR/1111:1113 | Single stack bend Not in a motif group | homologous IL_5TBW_035 IL_76488.2 | |
| IL_5TBW_272 | 1/AR/977:981, 1/AR/1102:1104 | No text annotation Not in a motif group | homologous IL_5TBW_036 IL_67474.4 | |
| IL_5TBW_273 | 1/AR/983:985, 1/AR/1099:1100 | Single bulged G Not in a motif group | homologous IL_5TBW_037 IL_00225.2 | |
| IL_5TBW_274 | 1/AR/991:997, 1/AR/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5TBW_038 IL_93830.3 | |
| IL_5TBW_275 | 1/AR/997:998, 1/AR/1050:1052 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_42622.2 | |
| IL_5TBW_276 | 1/AR/999:1004, 1/AR/1046:1049 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_02509.1 | |
| IL_5TBW_277 | 1/AR/1006:1009, 1/AR/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
| IL_5TBW_278 | 1/AR/1009:1011, 1/AR/1039:1041 | No text annotation Not in a motif group | homologous IL_5TBW_042 IL_95997.1 | |
| IL_5TBW_279 | 1/AR/1013:1018, 1/AR/1034:1037 | Other IL Not in a motif group | homologous IL_5TBW_043 IL_71110.1 | |
| IL_5TBW_280 | 1/AR/1069:1071, 1/AR/1087:1089 | No text annotation Not in a motif group | homologous IL_8C3A_047 IL_95997.1 | |
| IL_5TBW_281 | 1/AR/1074:1076, 1/AR/1083:1084 | Single bulged A Not in a motif group | geometric IL_5TBW_045 IL_37497.2 | |
| IL_5TBW_282 | 1/AR/1120:1122, 1/AR/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_5TBW_283 | 1/AR/1123:1125, 1/AR/1133:1135 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_047 IL_52767.2 | |
| IL_5TBW_284 | 1/AR/1167:1171, 1/AR/1328:1332 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.2 | |
| IL_5TBW_285 | 1/AR/1173:1180, 1/AR/1325:1326 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5TBW_049 IL_15861.7 | |
| IL_5TBW_286 | 1/AR/1180:1182, 1/AR/1324:1325 | Single bulged U Not in a motif group | homologous IL_5TBW_050 IL_83039.13 | |
| IL_5TBW_287 | 1/AR/1187:1194, 1/AR/1314:1319 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
| IL_5TBW_288 | 1/AR/1194:1205, 1/AR/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_5TBW_289 | 1/AR/1207:1209, 1/AR/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.13 | |
| IL_5TBW_290 | 1/AR/1218:1226, 1/AR/1283:1287 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.4 | |
| IL_5TBW_291 | 1/AR/1234:1238, 1/AR/1250:1254 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_5TBW_292 | 1/AR/1262:1266, 1/AR/1275:1277 | Major groove platform with extra cWW Not in a motif group | geometric IL_5D8H_003 IL_05564.2 | |
| IL_5TBW_293 | 1/AR/1376:1378, 1/AR/1428:1431 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_5TBW_294 | 1/AR/1385:1387, 1/AR/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_5TBW_295 | 1/AR/1388:1395, 1/AR/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_5TBW_296 | 1/AR/1398:1400, 1/AR/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_5TBW_297 | 1/AR/1444:1450, 1/AR/2354:2359 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_5TBW_298 | 1/AR/1500:1505, 1/AR/1513:1516 | No text annotation Not in a motif group | homologous IL_5TBW_062 IL_93630.2 | |
| IL_5TBW_299 | 1/AR/1532:1536, 1/AR/1585:1590 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_89002.2 | |
| IL_5TBW_300 | 1/AR/1618:1621, 1/AR/1824:1826 | Other IL Not in a motif group | homologous IL_5TBW_064 IL_84698.1 | |
| IL_5TBW_301 | 1/AR/1623:1626, 1/AR/1817:1822 | Multiple bulged bases with near cWW Not in a motif group | homologous IL_5TBW_065 IL_58686.2 | |
| IL_5TBW_302 | 1/AR/1627:1631, 1/AR/1811:1816 | No text annotation Not in a motif group | homologous IL_5TBW_066 IL_48431.1 | |
| IL_5TBW_303 | 1/AR/1645:1649, 1/AR/1806:1810 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.8 | |
| IL_5TBW_304 | 1/AR/1661:1663, 1/AR/1786:1788 | No text annotation Not in a motif group | homologous IL_5TBW_068 IL_95997.1 | |
| IL_5TBW_305 | 1/AR/1669:1670, 1/AR/1778:1780 | Single bulged C Not in a motif group | geometric IL_5TBW_069 IL_61258.12 | |
| IL_5TBW_306 | 1/AR/1670:1671, 1/AR/1776:1778 | Single stack bend Not in a motif group | homologous IL_5TBW_070 IL_76488.2 | |
| IL_5TBW_307 | 1/AR/1694:1698, 1/AR/1747:1752 | No text annotation Not in a motif group | homologous IL_5TBW_071 IL_69313.1 | |
| IL_5TBW_308 | 1/AR/1702:1707, 1/AR/1737:1743 | No text annotation Not in a motif group | homologous IL_5TBW_072 IL_39753.1 | |
| IL_5TBW_309 | 1/AR/1711:1717, 1/AR/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_5TBW_310 | 1/AR/1883:1889, 1/AR/2346:2349 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_49460.2 | |
| IL_5TBW_311 | 1/AR/1895:1897, 1/AR/2338:2340 | Isolated tWW turn Not in a motif group | homologous IL_5TBW_075 IL_54997.7 | |
| IL_5TBW_312 | 1/AR/1898:1901, 1/AR/2336:2337 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_5TBW_313 | 1/AR/1901:1906, 1/AR/2333:2336 | Intercalated tWH Not in a motif group | homologous IL_5TBW_077 IL_82842.2 | |
| IL_5TBW_314 | 1/AR/1918:1923, 1/AR/1928:1934 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_5TBW_078 IL_65969.2 | |
| IL_5TBW_315 | 1/AR/1940:1942, 1/AR/2106:2108 | No text annotation Not in a motif group | homologous IL_5TBW_079 IL_95997.1 | |
| IL_5TBW_316 | 1/AR/1947:1948, 1/AR/2098:2101 | No text annotation Not in a motif group | homologous IL_5TBW_080 IL_74125.1 | |
| IL_5TBW_317 | 1/AR/1951:1953, 1/AR/2094:2095 | Single stack bend Not in a motif group | homologous IL_5TBW_081 IL_76488.2 | |
| IL_5TBW_318 | 1/AR/2128:2129, 1/AR/2323:2325 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_5TBW_319 | 1/AR/2156:2161, 1/AR/2173:2180 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_5TBW_320 | 1/AR/2196:2199, 1/AR/2245:2246 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_084 IL_88739.1 | |
| IL_5TBW_321 | 1/AR/2200:2201, 1/AR/2241:2244 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_085 IL_16396.2 | |
| IL_5TBW_322 | 1/AR/2204:2206, 1/AR/2237:2238 | Single bulged U Not in a motif group | homologous IL_5TBW_086 IL_83039.13 | |
| IL_5TBW_323 | 1/AR/2206:2210, 1/AR/2235:2237 | Major groove platform with extra pair Not in a motif group | geometric IL_5TBW_087 IL_63450.2 | |
| IL_5TBW_324 | 1/AR/2211:2217, 1/AR/2228:2234 | No text annotation Not in a motif group | homologous IL_5TBW_088 IL_36973.6 | |
| IL_5TBW_325 | 1/AR/2276:2277, 1/AR/2307:2310 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_089 IL_59677.2 | |
| IL_5TBW_326 | 1/AR/2277:2288, 1/AR/2304:2307 | No text annotation Not in a motif group | geometric IL_5TBW_090 IL_81589.2 | |
| IL_5TBW_327 | 1/AR/2391:2394, 1/AR/2986:2988 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_5TBW_328 | 1/AR/2396:2398, 1/AR/2981:2984 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_54678.5 | |
| IL_5TBW_329 | 1/AR/2409:2411, 1/AR/2811:2812 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.13 | |
| IL_5TBW_330 | 1/AR/2412:2413, 1/AR/2807:2810 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_5TBW_331 | 1/AR/2423:2425, 1/AR/2604:2607 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_095 IL_38958.7 | |
| IL_5TBW_332 | 1/AR/2520:2526, 1/AR/2584:2587 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_5TBW_333 | 1/AR/2614:2615, 1/AR/2625:2627 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.2 | |
| IL_5TBW_334 | 1/AR/2666:2668, 1/AR/2686:2690 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.7 | |
| IL_5TBW_335 | 1/AR/2718:2721, 1/AR/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.2 | |
| IL_5TBW_336 | 1/AR/2770:2773, 1/AR/2787:2788 | Single stack bend with bulge Not in a motif group | homologous IL_5TBW_101 IL_76488.2 | |
| IL_5TBW_337 | 1/AR/2823:2824, 1/AR/2865:2867 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_27635.1 | |
| IL_5TBW_338 | 1/AR/2824:2826, 1/AR/2863:2865 | No text annotation Not in a motif group | homologous IL_5TBW_103 IL_95997.1 | |
| IL_5TBW_339 | 1/AR/2826:2828, 1/AR/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_5TBW_340 | 1/AR/2828:2830, 1/AR/2858:2862 | No text annotation Not in a motif group | homologous IL_5TBW_105 IL_92788.2 | |
| IL_5TBW_341 | 1/AR/2835:2839, 1/AR/2849:2853 | Triple sheared Not in a motif group | homologous IL_5TBW_106 IL_56467.8 | |
| IL_5TBW_342 | 1/AR/2876:2877, 1/AR/2949:2951 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.2 | |
| IL_5TBW_343 | 1/AR/2879:2881, 1/AR/2943:2947 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_108 IL_90933.2 | |
| IL_5TBW_344 | 1/AR/2881:2882, 1/AR/2940:2943 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_5TBW_345 | 1/AR/2889:2891, 1/AR/2912:2914 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_5TBW_346 | 1/AR/2891:2892, 1/AR/2909:2912 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_111 IL_95601.3 | |
| IL_5TBW_347 | 1/AR/2918:2920, 1/AR/2926:2928 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_5TBW_348 | 1/AR/2960:2961, 1/AR/2970:2972 | Single bulged A Not in a motif group | homologous IL_5TBW_113 IL_37497.2 | |
| IL_5TBW_349 | 1/AR/3004:3007, 1/AR/3139:3144 | Double sheared Not in a motif group | homologous IL_5TBW_114 IL_09705.9 | |
| IL_5TBW_350 | 1/AR/3012:3014, 1/AR/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_5TBW_351 | 1/AR/3018:3025, 1/AR/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_5TBW_352 | 1/AR/3047:3051, 1/AR/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_5TBW_353 | 1/AR/3054:3059, 1/AR/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_5TBW_354 | 1/AR/3063:3064, 1/AR/3077:3080 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_5TBW_355 | 1/AR/3103:3107, 1/AR/3127:3131 | UAA/GAN Not in a motif group | homologous IL_5TBW_120 IL_89002.2 | |
| IL_5TBW_356 | 1/AR/3161:3166, 1/AR/3284:3289 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
| IL_5TBW_357 | 1/AR/3168:3170, 1/AR/3280:3282 | No text annotation Not in a motif group | homologous IL_5TBW_122 IL_95997.1 | |
| IL_5TBW_358 | 1/AR/3177:3179, 1/AR/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_5TBW_359 | 1/AR/3179:3188, 1/AR/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_5TBW_360 | 1/AR/3193:3194, 1/AR/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_5TBW_361 | 1/AR/3225:3229, 1/AR/3258:3260 | No text annotation Not in a motif group | homologous IL_5TBW_126 IL_19389.6 | |
| IL_5TBW_362 | 1/AR/3233:3235, 1/AR/3252:3254 | No text annotation Not in a motif group | homologous IL_5TBW_127 IL_95997.1 | |
| IL_5TBW_363 | 1/AR/3235:3238, 1/AR/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6MWN_005 IL_30621.2 | |
| IL_5TBW_364 | 1/AR/3300:3303, 1/AR/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.2 | |
| IL_5TBW_365 | 1/AR/3318:3320, 1/AR/3387:3388 | Single bulged U Not in a motif group | geometric IL_5TBW_130 IL_83039.13 | |
| IL_5TBW_366 | 1/AR/3324:3325, 1/AR/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_5TBW_367 | 1/AR/3328:3330, 1/AR/3373:3378 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.2 | |
| IL_5TBW_368 | 1/AR/3332:3337, 1/AR/3367:3371 | No text annotation Not in a motif group | homologous IL_5TBW_133 IL_83162.5 | |
| IL_5TBW_369 | 1/AR/3340:3342, 1/AR/3363:3364 | Single bulged U Not in a motif group | geometric IL_5TBW_134 IL_83039.13 | |
| IL_5TBW_370 | 1/AR/3342:3345, 1/AR/3360:3363 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_5TBW_371 | 1/AR/3349:3350, 1/AR/3353:3356 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_136 IL_59677.2 | |
| IL_5TBW_372 | 1/AS/15:16, 1/AS/63:65 | Single bulged A IL_37497.2 | ||
| IL_5TBW_373 | 1/AS/21:27, 1/AS/53:58 | No text annotation IL_10207.2 | ||
| IL_5TBW_374 | 1/AS/28:29, 1/AS/49:52 | Minor groove platform IL_63797.2 | ||
| IL_5TBW_375 | 1/AS/29:30, 1/AS/47:49 | Single stack bend IL_76488.2 | ||
| IL_5TBW_376 | 1/AS/32:36, 1/AS/41:45 | Symmetric double minor groove platform IL_58103.6 | ||
| IL_5TBW_377 | 1/AS/72:80, 1/AS/100:106 | 8x7 Sarcin-Ricin; G-bulge IL_04346.7 | ||
| IL_5TBW_378 | 1/AS/84:87, 1/AS/94:96 | No text annotation IL_95997.1 | ||
| IL_5TBW_379 | 1/AT/44:64, 1/AT/96:100 | No text annotation Not in a motif group | geometric IL_5TBW_144 IL_44998.1 | |
| IL_5TBW_380 | 1/AT/64:66, 1/AT/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_5TBW_381 | 1/AT/68:69, 1/AT/89:91 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 | |
| IL_5TBW_382 | 1/AT/69:73, 1/AT/78:89 | No text annotation Not in a motif group | geometric IL_5TBW_147 IL_39287.1 | |
| IL_5TBW_383 | 1/sR/24:26, 1/sR/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_5TBW_384 | 1/sR/35:37, 1/sR/471:473 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_5TBW_385 | 1/sR/37:41, 1/sR/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_5TBW_386 | 1/sR/42:48, 1/sR/431:433 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_5TBW_387 | 1/sR/50:52, 1/sR/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_5TBW_388 | 1/sR/58:63, 1/sR/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_5TBW_389 | 1/sR/64:69, 1/sR/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_5TBW_390 | 1/sR/109:112, 1/sR/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_5TBW_391 | 1/sR/113:116, 1/sR/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_5TBW_392 | 1/sR/117:122, 1/sR/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_5TBW_393 | 1/sR/143:149, 1/sR/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_5TBW_394 | 1/sR/150:152, 1/sR/162:164 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_5TBW_395 | 1/sR/186:189, 1/sR/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_5TBW_396 | 1/sR/204:206, 1/sR/259:263 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_05564.2 | |
| IL_5TBW_397 | 1/sR/206:208, 1/sR/257:259 | No text annotation Not in a motif group | geometric IL_4V88_398 IL_95997.1 | |
| IL_5TBW_398 | 1/sR/213:243, 1/sR/250:252 | No text annotation Not in a motif group | ||
| IL_5TBW_399 | 1/sR/265:267, 1/sR/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_5TBW_400 | 1/sR/270:273, 1/sR/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_5TBW_401 | 1/sR/275:276, 1/sR/279:281 | Single bulged U Not in a motif group | geometric IL_4V88_401 IL_83039.13 | |
| IL_5TBW_402 | 1/sR/311:316, 1/sR/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_5TBW_403 | 1/sR/318:323, 1/sR/345:346 | No text annotation Not in a motif group | homologous IL_4V88_403 IL_48100.2 | |
| IL_5TBW_404 | 1/sR/363:365, 1/sR/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_5TBW_405 | 1/sR/389:391, 1/sR/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_5TBW_406 | 1/sR/411:413, 1/sR/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_5TBW_407 | 1/sR/439:441, 1/sR/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_5TBW_408 | 1/sR/443:448, 1/sR/458:461 | C-loop with extra cWW pair Not in a motif group | homologous IL_4V88_408 IL_93630.2 | |
| IL_5TBW_409 | 1/sR/481:483, 1/sR/504:507 | Self complementary Not in a motif group | geometric IL_5M0H_001 IL_82068.2 | |
| IL_5TBW_410 | 1/sR/516:520, 1/sR/532:536 | Triple sheared Not in a motif group | geometric IL_5J7L_338 IL_56467.8 | |
| IL_5TBW_411 | 1/sR/550:557, 1/sR/587:588 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_5TBW_412 | 1/sR/557:559, 1/sR/586:587 | Single bulged U Not in a motif group | homologous IL_4V88_414 IL_83039.13 | |
| IL_5TBW_413 | 1/sR/562:568, 1/sR/575:583 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_5TBW_414 | 1/sR/616:622, 1/sR/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_5TBW_415 | 1/sR/624:626, 1/sR/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_5TBW_416 | 1/sR/627:631, 1/sR/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_5TBW_417 | 1/sR/646:648, 1/sR/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_95997.1 | |
| IL_5TBW_418 | 1/sR/649:653, 1/sR/677:685 | No text annotation Not in a motif group | homologous IL_4V88_420 IL_97253.1 | |
| IL_5TBW_419 | 1/sR/703:708, 1/sR/730:735 | No text annotation Not in a motif group | homologous IL_4V88_421 IL_86929.2 | |
| IL_5TBW_420 | 1/sR/709:712, 1/sR/726:729 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4EYA_003 IL_30621.2 | |
| IL_5TBW_421 | 1/sR/746:747, 1/sR/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_5TBW_422 | 1/sR/748:750, 1/sR/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_5TBW_423 | 1/sR/751:759, 1/sR/791:798 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_5TBW_424 | 1/sR/819:822, 1/sR/850:852 | No text annotation Not in a motif group | homologous IL_4V88_426 IL_95997.1 | |
| IL_5TBW_425 | 1/sR/865:866, 1/sR/962:965 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_5TBW_426 | 1/sR/868:870, 1/sR/957:960 | No text annotation Not in a motif group | geometric IL_5UNE_004 IL_95997.1 | |
| IL_5TBW_427 | 1/sR/871:874, 1/sR/953:956 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_430 IL_30621.2 | |
| IL_5TBW_428 | 1/sR/874:878, 1/sR/950:953 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_5TBW_429 | 1/sR/885:888, 1/sR/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_5TBW_430 | 1/sR/893:899, 1/sR/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_5TBW_431 | 1/sR/985:990, 1/sR/1014:1016 | Other IL Not in a motif group | homologous IL_4V88_435 IL_22046.1 | |
| IL_5TBW_432 | 1/sR/990:994, 1/sR/1010:1014 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_436 IL_17136.1 | |
| IL_5TBW_433 | 1/sR/995:997, 1/sR/1007:1009 | No text annotation Not in a motif group | geometric IL_4E48_005 IL_95997.1 | |
| IL_5TBW_434 | 1/sR/1034:1036, 1/sR/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_5TBW_435 | 1/sR/1041:1044, 1/sR/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_5TBW_436 | 1/sR/1051:1053, 1/sR/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_5TBW_437 | 1/sR/1111:1118, 1/sR/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_5TBW_438 | 1/sR/1146:1147, 1/sR/1630:1632 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_5TBW_439 | 1/sR/1149:1151, 1/sR/1627:1628 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_5TBW_440 | 1/sR/1157:1160, 1/sR/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_5TBW_441 | 1/sR/1173:1175, 1/sR/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_5TBW_442 | 1/sR/1178:1179, 1/sR/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_5TBW_443 | 1/sR/1213:1215, 1/sR/1448:1450 | No text annotation Not in a motif group | geometric IL_4V88_446 IL_95997.1 | |
| IL_5TBW_444 | 1/sR/1234:1236, 1/sR/1249:1251 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_5TBW_445 | 1/sR/1268:1270, 1/sR/1440:1441 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_5TBW_446 | 1/sR/1272:1276, 1/sR/1436:1438 | Isolated cWS basepair Not in a motif group | geometric IL_4V88_450 IL_76319.2 | |
| IL_5TBW_447 | 1/sR/1276:1278, 1/sR/1430:1436 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_5TBW_448 | 1/sR/1280:1281, 1/sR/1426:1428 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_5TBW_449 | 1/sR/1290:1292, 1/sR/1323:1325 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_5TBW_450 | 1/sR/1306:1308, 1/sR/1317:1318 | Minor groove platform Not in a motif group | geometric IL_4V88_454 IL_93353.1 | |
| IL_5TBW_451 | 1/sR/1339:1342, 1/sR/1383:1385 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_5TBW_452 | 1/sR/1345:1349, 1/sR/1376:1380 | No text annotation Not in a motif group | ||
| IL_5TBW_453 | 1/sR/1352:1354, 1/sR/1369:1373 | No text annotation Not in a motif group | homologous IL_4V88_457 IL_95997.1 | |
| IL_5TBW_454 | 1/sR/1389:1391, 1/sR/1407:1412 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_458 IL_58032.1 | |
| IL_5TBW_455 | 1/sR/1480:1487, 1/sR/1519:1527 | No text annotation Not in a motif group | homologous IL_4V88_459 IL_10447.1 | |
| IL_5TBW_456 | 1/sR/1488:1494, 1/sR/1513:1518 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_5TBW_457 | 1/sR/1495:1498, 1/sR/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_5TBW_458 | 1/sR/1540:1545, 1/sR/1566:1571 | No text annotation Not in a motif group | homologous IL_4V88_462 IL_19954.2 | |
| IL_5TBW_459 | 1/sR/1636:1638, 1/sR/1764:1767 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_5TBW_460 | 1/sR/1638:1641, 1/sR/1760:1764 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_5TBW_461 | 1/sR/1642:1644, 1/sR/1757:1759 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_5TBW_462 | 1/sR/1644:1647, 1/sR/1753:1757 | Non canonical cWW and near pair Not in a motif group | homologous IL_4V88_466 IL_42334.1 | |
| IL_5TBW_463 | 1/sR/1650:1652, 1/sR/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_5TBW_464 | 1/sR/1653:1656, 1/sR/1744:1747 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_5TBW_465 | 1/sR/1656:1658, 1/sR/1743:1744 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.13 | |
| IL_5TBW_466 | 1/sR/1665:1667, 1/sR/1734:1736 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_5TBW_467 | 1/sR/1669:1672, 1/sR/1729:1732 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_5TBW_468 | 1/sR/1672:1674, 1/sR/1727:1729 | No text annotation Not in a motif group | geometric IL_4V88_472 IL_95997.1 | |
| IL_5TBW_469 | 1/sR/1675:1678, 1/sR/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_473 IL_30621.2 | |
| IL_5TBW_470 | 1/sR/1678:1682, 1/sR/1719:1723 | Triple sheared Not in a motif group | geometric IL_4V88_474 IL_56467.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5TBW_151 | No text annotation | ||
| IL_5TBW_158 | tWH-tWH-tHW-tHW | ||
| IL_5TBW_167 | No text annotation | ||
| IL_5TBW_184 | Major groove minor groove platform with extra cWW | ||
| IL_5TBW_185 | No text annotation | ||
| IL_5TBW_186 | No text annotation | ||
| IL_5TBW_187 | No text annotation | ||
| IL_5TBW_188 | Major groove platform; stack outside cWW | ||
| IL_5TBW_235 | No text annotation | ||
| IL_5TBW_236 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5TBW_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation Not in a motif group | ||
| J3_5TBW_002 | 1/1/369:376, 1/1/403:404, 1/4/19:20 | No text annotation Not in a motif group | ||
| J3_5TBW_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | ||
| J3_5TBW_004 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_5TBW_005 | 1/1/828:831, 1/1/863:867, 1/1/892:897 | No text annotation Not in a motif group | ||
| J3_5TBW_006 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation Not in a motif group | ||
| J3_5TBW_007 | 1/1/1230:1232, 1/1/1256:1262, 1/1/1277:1279 | No text annotation Not in a motif group | homologous J3_8C3A_005 NA | |
| J3_5TBW_008 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation Not in a motif group | homologous J3_8C3A_006 NA | |
| J3_5TBW_009 | 1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation Not in a motif group | homologous J3_8C3A_007 NA | |
| J3_5TBW_010 | 1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613 | No text annotation Not in a motif group | ||
| J3_5TBW_011 | 1/1/1631:1633, 1/1/1640:1645, 1/1/1810:1811 | No text annotation Not in a motif group | ||
| J3_5TBW_012 | 1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597 | No text annotation Not in a motif group | homologous J3_8C3A_008 NA | |
| J3_5TBW_013 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation Not in a motif group | ||
| J3_5TBW_014 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation Not in a motif group | ||
| J3_5TBW_015 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation Not in a motif group | ||
| J3_5TBW_016 | 1/3/9:14, 1/3/66:68, 1/3/110:112 | No text annotation Not in a motif group | ||
| J3_5TBW_017 | 1/A/41:42, 1/A/433:439, 1/A/464:466 | No text annotation Not in a motif group | ||
| J3_5TBW_018 | 1/A/633:635, 1/A/861:865, 1/A/965:966 | No text annotation Not in a motif group | ||
| J3_5TBW_020 | 1/A/881:884, 1/A/928:936, 1/A/943:947 | No text annotation Not in a motif group | ||
| J3_5TBW_021 | 1/A/1037:1039, 1/A/1079:1083, 1/A/1090:1094 | No text annotation Not in a motif group | homologous J3_8C3A_037 NA | |
| J3_5TBW_022 | 1/A/1161:1164, 1/A/1581:1587, 1/A/1609:1616 | No text annotation Not in a motif group | homologous J3_8C3A_038 NA | |
| J3_5TBW_023 | 1/A/1168:1171, 1/A/1468:1470, 1/A/1574:1577 | No text annotation Not in a motif group | homologous J3_8C3A_039 NA | |
| J3_5TBW_024 | 1/A/1180:1187, 1/A/1198:1209, 1/A/1454:1458 | No text annotation Not in a motif group | ||
| J3_5TBW_025 | 1/A/1215:1220, 1/A/1263:1267, 1/A/1442:1448 | No text annotation Not in a motif group | homologous J3_8C3A_041 NA | |
| J3_5TBW_026 | 1/A/1283:1288, 1/A/1327:1332, 1/A/1419:1424 | No text annotation Not in a motif group | ||
| J3_5TBW_027 | 1/A/1293:1294, 1/A/1303:1306, 1/A/1318:1322 | No text annotation Not in a motif group | ||
| J3_5TBW_028 | 1/A/1336:1338, 1/A/1386:1389, 1/A/1412:1415 | No text annotation Not in a motif group | homologous J3_8C3A_043 NA | |
| J3_5TBW_029 | 1/A/1470:1474, 1/A/1533:1540, 1/A/1571:1574 | No text annotation Not in a motif group | ||
| J3_5TBW_030 | 1/AR/113:123, 1/AR/149:158, 1/AR/263:267 | No text annotation Not in a motif group | ||
| J3_5TBW_031 | 1/AR/369:376, 1/AR/403:404, 1/AT/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_5TBW_032 | 1/AR/502:503, 1/AR/588:597, 1/AR/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_5TBW_033 | 1/AR/814:820, 1/AR/905:907, 1/AR/923:926 | No text annotation Not in a motif group | homologous J3_5TBW_004 NA | |
| J3_5TBW_034 | 1/AR/828:831, 1/AR/863:867, 1/AR/892:897 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_5TBW_035 | 1/AR/986:987, 1/AR/1062:1066, 1/AR/1092:1098 | No text annotation Not in a motif group | homologous J3_5TBW_006 NA | |
| J3_5TBW_036 | 1/AR/1230:1233, 1/AR/1255:1262, 1/AR/1277:1279 | No text annotation Not in a motif group | ||
| J3_5TBW_037 | 1/AR/1479:1485, 1/AR/1857:1859, 1/AR/1871:1874 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_5TBW_038 | 1/AR/1488:1491, 1/AR/1837:1843, 1/AR/1852:1854 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_5TBW_039 | 1/AR/1526:1531, 1/AR/1591:1595, 1/AR/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_5TBW_040 | 1/AR/1631:1633, 1/AR/1640:1645, 1/AR/1810:1811 | No text annotation Not in a motif group | homologous J3_5TBW_011 NA | |
| J3_5TBW_041 | 1/AR/2432:2435, 1/AR/2512:2517, 1/AR/2590:2597 | No text annotation Not in a motif group | homologous J3_5TBW_012 NA | |
| J3_5TBW_042 | 1/AR/2664:2666, 1/AR/2690:2692, 1/AR/2701:2706 | No text annotation Not in a motif group | homologous J3_8C3A_010 NA | |
| J3_5TBW_043 | 1/AR/2886:2889, 1/AR/2914:2916, 1/AR/2930:2936 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_5TBW_044 | 1/AR/3298:3300, 1/AR/3314:3318, 1/AR/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_5TBW_045 | 1/AS/9:14, 1/AS/66:67, 1/AS/111:112 | No text annotation Not in a motif group | ||
| J3_5TBW_046 | 1/sR/41:42, 1/sR/433:439, 1/sR/464:466 | No text annotation Not in a motif group | ||
| J3_5TBW_047 | 1/sR/633:635, 1/sR/861:865, 1/sR/965:966 | No text annotation Not in a motif group | ||
| J3_5TBW_048 | 1/sR/760:763, 1/sR/773:775, 1/sR/785:790 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_5TBW_049 | 1/sR/881:884, 1/sR/928:936, 1/sR/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_5TBW_050 | 1/sR/1037:1039, 1/sR/1079:1083, 1/sR/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_5TBW_051 | 1/sR/1161:1164, 1/sR/1581:1587, 1/sR/1609:1616 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_5TBW_052 | 1/sR/1168:1171, 1/sR/1468:1470, 1/sR/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_5TBW_053 | 1/sR/1180:1187, 1/sR/1198:1209, 1/sR/1454:1458 | No text annotation Not in a motif group | ||
| J3_5TBW_054 | 1/sR/1215:1220, 1/sR/1263:1267, 1/sR/1442:1448 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_5TBW_055 | 1/sR/1283:1288, 1/sR/1327:1332, 1/sR/1419:1424 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_5TBW_056 | 1/sR/1293:1294, 1/sR/1303:1306, 1/sR/1318:1322 | No text annotation Not in a motif group | ||
| J3_5TBW_057 | 1/sR/1336:1338, 1/sR/1386:1389, 1/sR/1412:1415 | No text annotation Not in a motif group | homologous J3_4V88_040 NA | |
| J3_5TBW_058 | 1/sR/1470:1474, 1/sR/1533:1540, 1/sR/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5TBW_019 | No text annotation |
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