6R6G Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6R6G_001 | 1/2/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
| HL_6R6G_002 | 1/2/30:40 | No text annotation | homologous HL_5IB8_208 HL_36684.4 | |
| HL_6R6G_003 | 1/2/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5WT1_003 HL_28252.8 | |
| HL_6R6G_004 | 1/3/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
| HL_6R6G_005 | 1/3/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.6 | |
| HL_6R6G_006 | 1/3/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6PMO_005 NA | |
| HL_6R6G_007 | 1/5/37:44 | No text annotation | geometric HL_4V9F_006 HL_30068.2 | |
| HL_6R6G_008 | 1/5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6R6G_009 | 1/5/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_6R6G_010 | 1/5/131:137 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_6R6G_011 | 1/5/198:205 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_005 NA | |
| HL_6R6G_012 | 1/5/216:220 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_6R6G_013 | 1/5/224:232 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_6R6G_014 | 1/5/283:292 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6R6G_015 | 1/5/308:317 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_6R6G_016 | 1/5/362:367 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6R6G_017 | 1/5/387:392 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6R6G_018 | 1/5/636:638 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_6R6G_019 | 1/5/699:707 | No text annotation | ||
| HL_6R6G_020 | 1/5/776:779 | No text annotation | ||
| HL_6R6G_131 | 1/5/877:888 | No text annotation | ||
| HL_6R6G_021 | 1/5/878:887 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_6R6G_022 | 1/5/925:931 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6R6G_123 | 1/5/947:952 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6R6G_124 | 1/5/995:1010 | No text annotation | ||
| HL_6R6G_024 | 1/5/997:1008 | No text annotation | ||
| HL_6R6G_025 | 1/5/1039:1046 | No text annotation | ||
| HL_6R6G_026 | 1/5/1121:1126 | GNRA | homologous HL_8C3A_019 NA | |
| HL_6R6G_027 | 1/5/1153:1162 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_6R6G_028 | 1/5/1187:1195 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6R6G_029 | 1/5/1235:1240 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6R6G_125 | 1/5/1298:1309 | No text annotation | ||
| HL_6R6G_030 | 1/5/1300:1306 | GNRA | homologous HL_5TBW_023 NA | |
| HL_6R6G_031 | 1/5/1353:1360 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_6R6G_032 | 1/5/1401:1407 | GNRA | homologous HL_5TBW_025 NA | |
| HL_6R6G_033 | 1/5/1423:1430 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6R6G_034 | 1/5/1510:1530 | No text annotation | ||
| HL_6R6G_035 | 1/5/1543:1550 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_6R6G_036 | 1/5/1624:1663 | No text annotation | ||
| HL_6R6G_037 | 1/5/1710:1715 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6R6G_038 | 1/5/1769:1777 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6R6G_039 | 1/5/1813:1819 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_6R6G_040 | 1/5/1851:1856 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6R6G_041 | 1/5/1880:1884 | No text annotation | geometric HL_5TBW_044 NA | |
| HL_6R6G_042 | 1/5/1916:1925 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_6R6G_043 | 1/5/1954:1959 | GNRA | geometric HL_4LFB_010 HL_37824.7 | |
| HL_6R6G_044 | 1/5/1971:1976 | GNRA | homologous HL_8C3A_036 NA | |
| HL_6R6G_045 | 1/5/2017:2025 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6R6G_046 | 1/5/2057:2063 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_6R6G_126 | 1/5/2097:2105 | No text annotation | ||
| HL_6R6G_047 | 1/5/2098:2103 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6R6G_048 | 1/5/2131:2135 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6R6G_049 | 1/5/2185:2192 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6R6G_050 | 1/5/2203:2209 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6R6G_051 | 1/5/2265:2270 | UNCG | homologous HL_8C3A_043 NA | |
| HL_6R6G_052 | 1/5/2294:2296 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6R6G_053 | 1/5/2312:2316 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6R6G_054 | 1/5/2337:2347 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6R6G_055 | 1/5/2366:2372 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6R6G_056 | 1/5/2422:2427 | GNRA | homologous HL_8C3A_048 NA | |
| HL_6R6G_057 | 1/5/2455:2465 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_6R6G_058 | 1/5/2494:2502 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_6R6G_059 | 1/5/2571:2580 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_6R6G_132 | 1/5/2645:2648 | No text annotation | ||
| HL_6R6G_060 | 1/5/2763:2771 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_6R6G_133 | 1/5/2780:2792 | No text annotation | homologous HL_8P9A_166 HL_91939.2 | |
| HL_6R6G_062 | 1/5/2820:2828 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6R6G_063 | 1/5/2840:2847 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6R6G_064 | 1/5/2871:2879 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6R6G_065 | 1/5/2891:2896 | GNRA | homologous HL_8C3A_060 NA | |
| HL_6R6G_066 | 1/5/2922:2932 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_6R6G_067 | 1/5/2987:2995 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6R6G_068 | 1/5/3044:3051 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_6R6G_069 | 1/5/3067:3073 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6R6G_070 | 1/5/3110:3115 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6R6G_071 | 1/5/3173:3178 | GNRA | geometric HL_5FJC_003 HL_37824.7 | |
| HL_6R6G_072 | 1/5/3216:3221 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6R6G_073 | 1/5/3258:3272 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6R6G_074 | 1/5/3339:3341 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6R6G_075 | 1/5/3386:3395 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6R6G_076 | 1/5/3455:3463 | No text annotation | geometric HL_5J7L_201 HL_64690.6 | |
| HL_6R6G_077 | 1/5/3501:3503 | Mini UNCG | homologous HL_8C3A_072 NA | |
| HL_6R6G_129 | 1/7/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_6R6G_078 | 1/7/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_6R6G_079 | 1/7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6R6G_080 | 1/8/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_93438.2 | |
| HL_6R6G_081 | 1/8/68:90 | No text annotation | ||
| HL_6R6G_082 | 1/8/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6R6G_083 | 1/8/121:129 | No text annotation | geometric HL_4LX6_002 HL_31585.4 | |
| HL_6R6G_084 | 1/AF/10:17 | GNRA wlth tandem sheared | geometric HL_1E8O_001 HL_81538.2 | |
| HL_6R6G_085 | 1/AF/31:40 | No text annotation | geometric HL_1E8O_002 HL_73255.1 | |
| HL_6R6G_086 | 1/AF/146:151 | GNRA variation | homologous HL_1MFQ_001 HL_37824.7 | |
| HL_6R6G_087 | 1/AF/197:202 | GNRA | homologous HL_1MFQ_002 HL_37824.7 | |
| HL_6R6G_088 | 1/K/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6R6G_089 | 1/K/69:80 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_6R6G_090 | 1/K/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_6R6G_091 | 1/K/197:202 | GNRA | geometric HL_5TBW_059 NA | |
| HL_6R6G_092 | 1/K/288:295 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_6R6G_130 | 1/K/322:329 | No text annotation | geometric HL_8KAL_003 HL_75660.5 | |
| HL_6R6G_094 | 1/K/377:387 | tRNA D-loop | geometric HL_6JXM_001 HL_20811.4 | |
| HL_6R6G_095 | 1/K/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6R6G_096 | 1/K/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6R6G_097 | 1/K/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_6R6G_098 | 1/K/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6R6G_099 | 1/K/539:544 | GNRA | geometric HL_4Y1M_003 HL_37824.7 | |
| HL_6R6G_100 | 1/K/569:581 | No text annotation | homologous HL_4V88_199 NA | |
| HL_6R6G_101 | 1/K/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6R6G_102 | 1/K/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_6R6G_103 | 1/K/833:841 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_6R6G_104 | 1/K/885:901 | Pseudoknot geometry | homologous HL_4V88_205 NA | |
| HL_6R6G_105 | 1/K/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6R6G_106 | 1/K/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_6R6G_107 | 1/K/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6R6G_108 | 1/K/1114:1119 | No text annotation | geometric HL_7A0S_004 HL_93535.1 | |
| HL_6R6G_109 | 1/K/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_6R6G_110 | 1/K/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_6R6G_111 | 1/K/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_6R6G_112 | 1/K/1295:1304 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_6R6G_113 | 1/K/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_6R6G_114 | 1/K/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6R6G_115 | 1/K/1416:1424 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_6R6G_116 | 1/K/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_6R6G_117 | 1/K/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6R6G_118 | 1/K/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6R6G_119 | 1/K/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6R6G_120 | 1/K/1760:1772 | No text annotation | geometric HL_8KAL_003 HL_75660.5 | |
| HL_6R6G_121 | 1/K/1847:1852 | GNRA variation | homologous HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6R6G_122 | No text annotation | ||
| HL_6R6G_023 | GNRA with extra cWW | ||
| HL_6R6G_127 | No text annotation | ||
| HL_6R6G_061 | No text annotation | ||
| HL_6R6G_128 | No text annotation | ||
| HL_6R6G_093 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6R6G_001 | 1/5/6:7, 1/8/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6R6G_002 | 1/5/12:14, 1/8/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6R6G_003 | 1/5/16:18, 1/8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_6R6G_004 | 1/5/26:27, 1/5/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6R6G_274 | 1/5/31:37, 1/5/44:51 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_04346.10 | |
| IL_6R6G_006 | 1/5/81:88, 1/5/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6R6G_007 | 1/5/118:121, 1/5/152:153 | Multiple bulged bases | geometric IL_6CZR_119 NA | |
| IL_6R6G_275 | 1/5/118:122, 1/5/147:153 | No text annotation | ||
| IL_6R6G_008 | 1/5/121:122, 1/5/147:152 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_6R6G_009 | 1/5/125:126, 1/5/142:144 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_6R6G_010 | 1/5/168:173, 1/5/257:261 | No text annotation | ||
| IL_6R6G_011 | 1/5/180:182, 1/5/249:250 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_6R6G_012 | 1/5/182:183, 1/5/246:249 | No text annotation | geometric IL_6AZ4_001 NA | |
| IL_6R6G_013 | 1/5/189:190, 1/5/238:240 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_6R6G_014 | 1/5/193:195, 1/5/208:209 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6R6G_015 | 1/5/333:336, 1/8/32:33 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 IL_95583.2 | |
| IL_6R6G_016 | 1/5/342:344, 1/8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6R6G_017 | 1/5/381:384, 1/5/395:408 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_6R6G_018 | 1/5/409:415, 1/8/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_6R6G_019 | 1/5/437:440, 1/5/861:865 | No text annotation | geometric IL_4PHY_003 IL_99358.1 | |
| IL_6R6G_020 | 1/5/442:444, 1/5/858:859 | No text annotation | ||
| IL_6R6G_021 | 1/5/453:454, 1/5/571:573 | Single bulged C | geometric IL_1S03_002 IL_61258.15 | |
| IL_6R6G_022 | 1/5/456:458, 1/5/567:569 | Isolated non-canonical cWW pair | geometric IL_4J50_002 IL_87907.2 | |
| IL_6R6G_023 | 1/5/460:466, 1/5/558:565 | No text annotation | ||
| IL_6R6G_024 | 1/5/475:477, 1/5/548:549 | Single bulged C | geometric IL_7KGA_004 IL_61258.15 | |
| IL_6R6G_025 | 1/5/477:480, 1/5/547:548 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_6R6G_026 | 1/5/482:483, 1/5/541:545 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_6R6G_027 | 1/5/486:488, 1/5/537:538 | Single bulged U | geometric IL_4WF9_030 IL_89505.4 | |
| IL_6R6G_028 | 1/5/492:494, 1/5/532:533 | Single bulged C | geometric IL_3SNP_003 IL_61258.15 | |
| IL_6R6G_029 | 1/5/500:502, 1/5/525:526 | Single bulged A | geometric IL_6WPI_001 IL_31462.6 | |
| IL_6R6G_030 | 1/5/509:511, 1/5/517:518 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6R6G_277 | 1/5/509:513, 1/5/514:518 | Partly complementary | geometric IL_7VYX_004 IL_49751.4 | |
| IL_6R6G_031 | 1/5/511:513, 1/5/514:517 | No text annotation | geometric IL_4WSM_372 IL_09990.4 | |
| IL_6R6G_032 | 1/5/585:586, 1/5/847:849 | Single bulged G | geometric IL_4LFB_036 IL_00225.13 | |
| IL_6R6G_033 | 1/5/599:600, 1/5/679:682 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_6R6G_034 | 1/5/603:607, 1/5/675:676 | No text annotation | ||
| IL_6R6G_035 | 1/5/608:611, 1/5/664:674 | No text annotation | ||
| IL_6R6G_036 | 1/5/613:616, 1/5/659:662 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_6R6G_278 | 1/5/622:629, 1/5/645:653 | No text annotation | geometric IL_8C3A_022 NA | |
| IL_6R6G_038 | 1/5/718:720, 1/5/834:836 | Isolated non-canonical cWW pair | geometric IL_7A0S_031 IL_87907.2 | |
| IL_6R6G_039 | 1/5/740:741, 1/5/817:819 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6R6G_040 | 1/5/742:747, 1/5/813:816 | No text annotation | ||
| IL_6R6G_041 | 1/5/747:749, 1/5/809:813 | Isolated cWS basepair | geometric IL_4WF9_034 NA | |
| IL_6R6G_042 | 1/5/751:752, 1/5/805:807 | Single bulged C | geometric IL_3SNP_003 IL_61258.15 | |
| IL_6R6G_043 | 1/5/762:763, 1/5/793:795 | Single stack bend | geometric IL_5J7L_249 IL_90729.1 | |
| IL_6R6G_044 | 1/5/765:766, 1/5/789:791 | No text annotation | ||
| IL_6R6G_045 | 1/5/771:773, 1/5/782:784 | Isolated cWH basepair | geometric IL_3W3S_003 IL_10167.6 | |
| IL_6R6G_046 | 1/5/918:921, 1/5/937:940 | No text annotation | ||
| IL_6R6G_282 | 1/5/918:922, 1/5/934:940 | No text annotation | ||
| IL_6R6G_047 | 1/5/921:922, 1/5/934:937 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.4 | |
| IL_6R6G_048 | 1/5/986:990, 1/5/1015:1020 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_6R6G_049 | 1/5/992:995, 1/5/1010:1013 | Double sheared | geometric IL_4WF9_087 IL_09705.15 | |
| IL_6R6G_050 | 1/5/1027:1029, 1/5/1055:1058 | Isolated non-canonical cWW pair | geometric IL_4AOB_005 IL_87907.2 | |
| IL_6R6G_051 | 1/5/1034:1036, 1/5/1049:1050 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_6R6G_052 | 1/5/1080:1082, 1/5/1215:1217 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_6R6G_053 | 1/5/1082:1086, 1/5/1208:1215 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_6R6G_054 | 1/5/1110:1111, 1/5/1136:1138 | Single bulged G | geometric IL_4V9F_026 IL_00225.13 | |
| IL_6R6G_055 | 1/5/1111:1115, 1/5/1132:1136 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_6R6G_056 | 1/5/1146:1149, 1/5/1165:1167 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6R6G_057 | 1/5/1150:1152, 1/5/1163:1164 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6R6G_058 | 1/5/1184:1186, 1/5/1196:1200 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_6R6G_059 | 1/5/1231:1233, 1/5/1242:1244 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6R6G_060 | 1/5/1246:1248, 1/5/1385:1388 | No text annotation | ||
| IL_6R6G_061 | 1/5/1254:1258, 1/5/1378:1379 | No text annotation | ||
| IL_6R6G_062 | 1/5/1260:1262, 1/5/1375:1376 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6R6G_063 | 1/5/1269:1274, 1/5/1329:1334 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_6R6G_284 | 1/5/1269:1275, 1/5/1327:1334 | No text annotation | ||
| IL_6R6G_064 | 1/5/1274:1275, 1/5/1327:1329 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_6R6G_065 | 1/5/1276:1281, 1/5/1323:1326 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_6R6G_066 | 1/5/1283:1286, 1/5/1318:1321 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_6R6G_067 | 1/5/1286:1288, 1/5/1316:1318 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_6R6G_068 | 1/5/1290:1293, 1/5/1313:1314 | Multiple bulged bases | geometric IL_4YAZ_007 IL_82107.4 | |
| IL_6R6G_069 | 1/5/1295:1297, 1/5/1310:1311 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
| IL_6R6G_070 | 1/5/1298:1300, 1/5/1306:1309 | Other IL | geometric IL_5TBW_064 NA | |
| IL_6R6G_071 | 1/5/1351:1353, 1/5/1360:1361 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_6R6G_072 | 1/5/1395:1397, 1/5/1411:1413 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_6R6G_074 | 1/5/1442:1446, 1/5/1604:1608 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_6R6G_075 | 1/5/1448:1455, 1/5/1601:1602 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_6R6G_076 | 1/5/1455:1457, 1/5/1600:1601 | No text annotation | ||
| IL_6R6G_077 | 1/5/1457:1459, 1/5/1599:1600 | No text annotation | ||
| IL_6R6G_078 | 1/5/1463:1470, 1/5/1590:1595 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_6R6G_079 | 1/5/1470:1481, 1/5/1575:1590 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6R6G_080 | 1/5/1483:1485, 1/5/1572:1573 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_6R6G_081 | 1/5/1494:1502, 1/5/1559:1563 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_6R6G_082 | 1/5/1538:1542, 1/5/1551:1553 | Major groove platform with extra cWW | homologous IL_8C3A_059 NA | |
| IL_6R6G_083 | 1/5/1620:1622, 1/5/1665:1666 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
| IL_6R6G_084 | 1/5/1683:1685, 1/5/1735:1738 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6R6G_085 | 1/5/1692:1694, 1/5/1727:1728 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6R6G_086 | 1/5/1695:1702, 1/5/1722:1726 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_6R6G_087 | 1/5/1705:1707, 1/5/1718:1719 | Single bulged A | geometric IL_5WWT_001 IL_31462.6 | |
| IL_6R6G_088 | 1/5/1751:1757, 1/5/2556:2561 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_6R6G_089 | 1/5/1808:1812, 1/5/1820:1822 | C-loop | geometric IL_7A0S_047 IL_83150.2 | |
| IL_6R6G_090 | 1/5/1839:1843, 1/5/1902:1907 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6R6G_285 | 1/5/1847:1849, 1/5/1858:1864 | No text annotation | ||
| IL_6R6G_286 | 1/5/1869:1872, 1/5/1892:1894 | No text annotation | geometric IL_4V9F_053 IL_09990.4 | |
| IL_6R6G_091 | 1/5/1870:1872, 1/5/1892:1893 | Not an internal loop | geometric IL_4UYK_002 NA | |
| IL_6R6G_092 | 1/5/1935:1940, 1/5/2165:2167 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_6R6G_093 | 1/5/1942:1943, 1/5/2161:2163 | Single bulged U | geometric IL_2R8S_004 IL_89505.4 | |
| IL_6R6G_094 | 1/5/1982:1986, 1/5/2145:2149 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_6R6G_095 | 1/5/2006:2007, 1/5/2117:2119 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_6R6G_096 | 1/5/2007:2008, 1/5/2115:2117 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_6R6G_097 | 1/5/2039:2041, 1/5/2078:2081 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_6R6G_098 | 1/5/2044:2046, 1/5/2074:2075 | Single bulged G | geometric IL_2IZN_001 IL_00225.13 | |
| IL_6R6G_099 | 1/5/2049:2055, 1/5/2065:2071 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6R6G_100 | 1/5/2097:2098, 1/5/2103:2105 | No text annotation | ||
| IL_6R6G_101 | 1/5/2225:2231, 1/5/2548:2551 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_6R6G_102 | 1/5/2237:2239, 1/5/2540:2542 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6R6G_103 | 1/5/2240:2243, 1/5/2538:2539 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_6R6G_287 | 1/5/2240:2248, 1/5/2535:2539 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6R6G_104 | 1/5/2243:2248, 1/5/2535:2538 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_6R6G_105 | 1/5/2260:2265, 1/5/2270:2276 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_6R6G_106 | 1/5/2282:2284, 1/5/2308:2310 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6R6G_107 | 1/5/2289:2290, 1/5/2300:2303 | No text annotation | homologous IL_5TBW_080 NA | |
| IL_6R6G_108 | 1/5/2330:2331, 1/5/2525:2527 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_6R6G_109 | 1/5/2358:2363, 1/5/2375:2382 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_6R6G_110 | 1/5/2398:2401, 1/5/2447:2448 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6R6G_111 | 1/5/2402:2403, 1/5/2443:2446 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6R6G_112 | 1/5/2406:2408, 1/5/2439:2440 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_6R6G_113 | 1/5/2408:2412, 1/5/2437:2439 | No text annotation | homologous IL_8C3A_092 NA | |
| IL_6R6G_114 | 1/5/2413:2419, 1/5/2430:2436 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_6R6G_115 | 1/5/2478:2479, 1/5/2509:2512 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_6R6G_116 | 1/5/2479:2490, 1/5/2506:2509 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_6R6G_117 | 1/5/2593:2596, 1/5/3133:3135 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_6R6G_118 | 1/5/2598:2600, 1/5/3128:3131 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6R6G_119 | 1/5/2611:2613, 1/5/2958:2959 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6R6G_120 | 1/5/2614:2615, 1/5/2954:2957 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6R6G_121 | 1/5/2625:2627, 1/5/2751:2754 | Isolated tHS basepair with bulges | homologous IL_5TBW_095 NA | |
| IL_6R6G_122 | 1/5/2664:2670, 1/5/2731:2734 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_6R6G_123 | 1/5/2676:2682, 1/5/2685:2691 | No text annotation | ||
| IL_6R6G_124 | 1/5/2761:2762, 1/5/2772:2774 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6R6G_125 | 1/5/2813:2815, 1/5/2833:2837 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_6R6G_126 | 1/5/2861:2863, 1/5/2887:2888 | Single bulged A | geometric IL_5WWT_001 IL_31462.6 | |
| IL_6R6G_127 | 1/5/2865:2868, 1/5/2882:2885 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_6R6G_128 | 1/5/2917:2920, 1/5/2934:2935 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6R6G_129 | 1/5/2970:2971, 1/5/3012:3014 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_6R6G_288 | 1/5/2970:2973, 1/5/3010:3014 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_6R6G_130 | 1/5/2971:2973, 1/5/3010:3012 | Isolated non-canonical cWW pair | homologous IL_5TBW_103 NA | |
| IL_6R6G_131 | 1/5/2973:2975, 1/5/3009:3010 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_6R6G_306 | 1/5/2975:2977, 1/5/3005:3009 | No text annotation | homologous IL_8CRE_113 IL_51387.2 | |
| IL_6R6G_133 | 1/5/2982:2986, 1/5/2996:3000 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6R6G_134 | 1/5/3023:3024, 1/5/3096:3098 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6R6G_135 | 1/5/3026:3028, 1/5/3090:3094 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_6R6G_136 | 1/5/3028:3029, 1/5/3087:3090 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_6R6G_137 | 1/5/3036:3038, 1/5/3059:3061 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_6R6G_289 | 1/5/3036:3040, 1/5/3055:3061 | No text annotation | ||
| IL_6R6G_138 | 1/5/3038:3040, 1/5/3055:3059 | No text annotation | ||
| IL_6R6G_139 | 1/5/3065:3067, 1/5/3073:3075 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_6R6G_140 | 1/5/3107:3108, 1/5/3117:3119 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_6R6G_141 | 1/5/3148:3149, 1/5/3293:3295 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_6R6G_142 | 1/5/3149:3152, 1/5/3291:3293 | No text annotation | ||
| IL_6R6G_291 | 1/5/3150:3155, 1/5/3287:3293 | No text annotation | ||
| IL_6R6G_143 | 1/5/3152:3155, 1/5/3287:3291 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_6R6G_144 | 1/5/3160:3162, 1/5/3188:3190 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6R6G_145 | 1/5/3166:3173, 1/5/3178:3184 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_6R6G_146 | 1/5/3194:3199, 1/5/3239:3243 | No text annotation | ||
| IL_6R6G_147 | 1/5/3202:3207, 1/5/3232:3236 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_6R6G_148 | 1/5/3208:3210, 1/5/3229:3231 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10167.6 | |
| IL_6R6G_149 | 1/5/3211:3212, 1/5/3225:3228 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6R6G_150 | 1/5/3250:3255, 1/5/3275:3280 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_6R6G_151 | 1/5/3304:3310, 1/5/3433:3440 | No text annotation | ||
| IL_6R6G_307 | 1/5/3319:3329, 1/5/3350:3359 | No text annotation | homologous IL_8P9A_352 IL_42231.1 | |
| IL_6R6G_153 | 1/5/3332:3336, 1/5/3344:3347 | No text annotation | geometric IL_2O3Y_003 IL_51479.1 | |
| IL_6R6G_154 | 1/5/3367:3370, 1/5/3411:3414 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_85033.2 | |
| IL_6R6G_155 | 1/5/3372:3378, 1/5/3404:3409 | No text annotation | ||
| IL_6R6G_292 | 1/5/3372:3382, 1/5/3399:3409 | No text annotation | ||
| IL_6R6G_156 | 1/5/3379:3382, 1/5/3399:3403 | No text annotation | ||
| IL_6R6G_157 | 1/5/3452:3455, 1/5/3463:3466 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_6R6G_158 | 1/5/3472:3474, 1/5/3532:3534 | Isolated non-canonical cWW pair | geometric IL_3DIL_006 IL_87907.2 | |
| IL_6R6G_159 | 1/5/3476:3477, 1/5/3528:3530 | Single bulged C | geometric IL_1KUQ_002 IL_61258.15 | |
| IL_6R6G_308 | 1/5/3480:3482, 1/5/3520:3525 | No text annotation | homologous IL_8CRE_138 IL_43622.1 | |
| IL_6R6G_161 | 1/5/3483:3489, 1/5/3514:3519 | No text annotation | ||
| IL_6R6G_162 | 1/5/3492:3494, 1/5/3510:3511 | Single bulged C | geometric IL_1S03_006 IL_61258.15 | |
| IL_6R6G_163 | 1/5/3494:3497, 1/5/3507:3510 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_6R6G_164 | 1/7/15:16, 1/7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6R6G_165 | 1/7/21:27, 1/7/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6R6G_166 | 1/7/28:29, 1/7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_6R6G_167 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_6R6G_168 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6R6G_169 | 1/7/79:81, 1/7/95:97 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_07785.1 | |
| IL_6R6G_170 | 1/7/82:85, 1/7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6R6G_171 | 1/8/64:66, 1/8/92:95 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_6R6G_172 | 1/AF/52:54, 1/AF/292:294 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_87907.2 | |
| IL_6R6G_173 | 1/AF/55:57, 1/AF/290:291 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6R6G_293 | 1/AF/55:60, 1/AF/287:291 | No text annotation | ||
| IL_6R6G_174 | 1/AF/57:60, 1/AF/287:290 | No text annotation | ||
| IL_6R6G_294 | 1/AF/64:114, 1/AF/237:283 | No text annotation | ||
| IL_6R6G_175 | 1/AF/116:123, 1/AF/227:235 | No text annotation | ||
| IL_6R6G_176 | 1/AF/132:134, 1/AF/163:165 | Isolated non-canonical cWW pair | homologous IL_1MFQ_003 IL_87907.2 | |
| IL_6R6G_177 | 1/AF/138:141, 1/AF/156:159 | Tandem non-canonical cWW pairs | homologous IL_1MFQ_004 IL_85033.2 | |
| IL_6R6G_178 | 1/AF/175:177, 1/AF/220:221 | Single bulged A | geometric IL_4P3U_011 IL_31462.6 | |
| IL_6R6G_179 | 1/AF/181:187, 1/AF/212:216 | No text annotation | ||
| IL_6R6G_180 | 1/AF/190:195, 1/AF/204:209 | tSH-tHW-tHS-cWW | homologous IL_1MFQ_007 IL_76308.6 | |
| IL_6R6G_181 | 1/K/23:25, 1/K/649:651 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_6R6G_182 | 1/K/34:36, 1/K/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6R6G_183 | 1/K/37:40, 1/K/514:518 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
| IL_6R6G_184 | 1/K/41:47, 1/K/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_6R6G_185 | 1/K/49:51, 1/K/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6R6G_186 | 1/K/57:62, 1/K/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_6R6G_187 | 1/K/63:68, 1/K/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_6R6G_188 | 1/K/108:110, 1/K/351:353 | Isolated non-canonical cWW pair | geometric IL_1ZX7_004 NA | |
| IL_6R6G_189 | 1/K/110:112, 1/K/349:351 | Isolated non-canonical cWW pair | geometric IL_4M4O_001 IL_87907.2 | |
| IL_6R6G_295 | 1/K/110:115, 1/K/348:351 | No text annotation | ||
| IL_6R6G_190 | 1/K/112:115, 1/K/348:349 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_6R6G_191 | 1/K/116:121, 1/K/343:347 | No text annotation | homologous IL_4V88_393 NA | |
| IL_6R6G_192 | 1/K/130:144, 1/K/175:182 | No text annotation | ||
| IL_6R6G_193 | 1/K/145:151, 1/K/167:174 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_6R6G_194 | 1/K/152:155, 1/K/163:166 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_6R6G_195 | 1/K/188:192, 1/K/207:211 | Triple sheared | geometric IL_5J7L_338 IL_17948.2 | |
| IL_6R6G_196 | 1/K/215:219, 1/K/302:310 | No text annotation | ||
| IL_6R6G_197 | 1/K/223:288, 1/K/295:298 | No text annotation | ||
| IL_6R6G_198 | 1/K/312:314, 1/K/336:337 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_6R6G_199 | 1/K/317:320, 1/K/331:333 | No text annotation | homologous IL_4V88_400 NA | |
| IL_6R6G_200 | 1/K/359:364, 1/K/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6R6G_201 | 1/K/366:371, 1/K/393:394 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_6R6G_202 | 1/K/411:413, 1/K/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6R6G_203 | 1/K/437:439, 1/K/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6R6G_204 | 1/K/459:461, 1/K/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_6R6G_205 | 1/K/487:489, 1/K/511:512 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
| IL_6R6G_206 | 1/K/491:495, 1/K/508:509 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_6R6G_296 | 1/K/491:496, 1/K/506:509 | C-loop with extra cWW pair | geometric IL_4V88_408 NA | |
| IL_6R6G_207 | 1/K/495:496, 1/K/506:508 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_6R6G_208 | 1/K/529:530, 1/K/554:556 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_6R6G_209 | 1/K/535:537, 1/K/546:549 | No text annotation | ||
| IL_6R6G_210 | 1/K/563:565, 1/K/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_6R6G_211 | 1/K/566:569, 1/K/581:584 | tSH-tHW | geometric IL_5UNE_005 IL_85033.2 | |
| IL_6R6G_212 | 1/K/599:608, 1/K/635:637 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_6R6G_213 | 1/K/611:617, 1/K/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6R6G_214 | 1/K/663:665, 1/K/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_6R6G_215 | 1/K/665:671, 1/K/1161:1162 | No text annotation | homologous IL_4V88_416 NA | |
| IL_6R6G_216 | 1/K/673:675, 1/K/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6R6G_217 | 1/K/676:680, 1/K/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6R6G_218 | 1/K/692:694, 1/K/732:734 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_87907.2 | |
| IL_6R6G_219 | 1/K/745:749, 1/K/794:796 | Not an internal loop | geometric IL_5VCI_005 NA | |
| IL_6R6G_220 | 1/K/752:754, 1/K/790:791 | No text annotation | ||
| IL_6R6G_221 | 1/K/802:803, 1/K/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_6R6G_222 | 1/K/805:807, 1/K/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6R6G_223 | 1/K/807:815, 1/K/849:856 | No text annotation | geometric IL_4V88_425 NA | |
| IL_6R6G_224 | 1/K/874:876, 1/K/910:912 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_87907.2 | |
| IL_6R6G_225 | 1/K/877:879, 1/K/907:909 | Isolated non-canonical cWW pair | geometric IL_4LFB_059 IL_87907.2 | |
| IL_6R6G_226 | 1/K/922:923, 1/K/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_6R6G_309 | 1/K/925:926, 1/K/1015:1017 | Single bulged U | geometric IL_7KVT_002 IL_89505.4 | |
| IL_6R6G_228 | 1/K/928:931, 1/K/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_4V88_430 NA | |
| IL_6R6G_229 | 1/K/931:935, 1/K/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_6R6G_230 | 1/K/943:945, 1/K/981:983 | Isolated non-canonical cWW pair | geometric IL_4V88_472 NA | |
| IL_6R6G_299 | 1/K/943:947, 1/K/979:983 | Triple non-canonical cWW pairs | geometric IL_4LFB_065 IL_49751.4 | |
| IL_6R6G_231 | 1/K/952:956, 1/K/967:974 | Kink-turn | geometric IL_7A0S_004 IL_94910.1 | |
| IL_6R6G_232 | 1/K/1042:1047, 1/K/1071:1073 | Other IL | geometric IL_4V88_435 NA | |
| IL_6R6G_233 | 1/K/1047:1051, 1/K/1067:1071 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_6R6G_234 | 1/K/1091:1093, 1/K/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6R6G_235 | 1/K/1098:1101, 1/K/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_6R6G_236 | 1/K/1101:1103, 1/K/1129:1131 | No text annotation | geometric IL_4KR9_001 NA | |
| IL_6R6G_237 | 1/K/1108:1110, 1/K/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_6R6G_238 | 1/K/1168:1175, 1/K/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_6R6G_239 | 1/K/1203:1204, 1/K/1694:1696 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_6R6G_240 | 1/K/1206:1208, 1/K/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6R6G_241 | 1/K/1214:1217, 1/K/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_6R6G_242 | 1/K/1230:1232, 1/K/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_6R6G_243 | 1/K/1235:1236, 1/K/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6R6G_244 | 1/K/1270:1272, 1/K/1510:1512 | Isolated non-canonical cWW pair | geometric IL_4E48_005 IL_87907.2 | |
| IL_6R6G_245 | 1/K/1281:1287, 1/K/1314:1316 | No text annotation | ||
| IL_6R6G_310 | 1/K/1281:1290, 1/K/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_6R6G_246 | 1/K/1287:1290, 1/K/1309:1314 | No text annotation | ||
| IL_6R6G_247 | 1/K/1291:1294, 1/K/1305:1308 | Tandem non-canonical cWW pairs | geometric IL_6DTD_001 IL_25872.4 | |
| IL_6R6G_248 | 1/K/1325:1327, 1/K/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6R6G_249 | 1/K/1329:1333, 1/K/1498:1500 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_6R6G_304 | 1/K/1329:1335, 1/K/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_6R6G_250 | 1/K/1333:1335, 1/K/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_6R6G_251 | 1/K/1337:1338, 1/K/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6R6G_252 | 1/K/1347:1349, 1/K/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6R6G_253 | 1/K/1363:1365, 1/K/1374:1375 | Minor groove platform | geometric IL_5ML7_009 IL_51454.3 | |
| IL_6R6G_254 | 1/K/1395:1399, 1/K/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_3CUL_002 NA | |
| IL_6R6G_255 | 1/K/1402:1405, 1/K/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_6R6G_256 | 1/K/1412:1413, 1/K/1427:1429 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_6R6G_257 | 1/K/1537:1539, 1/K/1594:1596 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_87907.2 | |
| IL_6R6G_305 | 1/K/1541:1550, 1/K/1582:1592 | No text annotation | ||
| IL_6R6G_258 | 1/K/1550:1558, 1/K/1577:1582 | 180 degree turn | geometric IL_5J7L_055 IL_11344.2 | |
| IL_6R6G_259 | 1/K/1560:1562, 1/K/1573:1575 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_6R6G_260 | 1/K/1604:1610, 1/K/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_6R6G_261 | 1/K/1700:1702, 1/K/1833:1836 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6R6G_262 | 1/K/1702:1705, 1/K/1829:1833 | No text annotation | homologous IL_4V88_464 NA | |
| IL_6R6G_263 | 1/K/1706:1708, 1/K/1826:1828 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_6R6G_264 | 1/K/1708:1711, 1/K/1822:1826 | No text annotation | geometric IL_1CSL_001 IL_25872.4 | |
| IL_6R6G_265 | 1/K/1714:1716, 1/K/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_6R6G_266 | 1/K/1717:1720, 1/K/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
| IL_6R6G_267 | 1/K/1720:1722, 1/K/1812:1813 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_6R6G_268 | 1/K/1729:1731, 1/K/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6R6G_269 | 1/K/1733:1736, 1/K/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_6R6G_270 | 1/K/1739:1741, 1/K/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_87907.2 | |
| IL_6R6G_271 | 1/K/1742:1746, 1/K/1788:1792 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_6R6G_272 | 1/K/1750:1751, 1/K/1782:1784 | No text annotation | ||
| IL_6R6G_273 | 1/K/1751:1752, 1/K/1780:1782 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6R6G_005 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_6R6G_276 | No text annotation | ||
| IL_6R6G_037 | No text annotation | ||
| IL_6R6G_279 | Tandem non-canonical cWW pairs | ||
| IL_6R6G_280 | No text annotation | ||
| IL_6R6G_281 | No text annotation | ||
| IL_6R6G_283 | No text annotation | ||
| IL_6R6G_073 | No text annotation | ||
| IL_6R6G_132 | No text annotation | ||
| IL_6R6G_290 | Isolated non-canonical cWW pair | ||
| IL_6R6G_152 | No text annotation | ||
| IL_6R6G_160 | No text annotation | ||
| IL_6R6G_297 | No text annotation | ||
| IL_6R6G_227 | Isolated cWH basepair | ||
| IL_6R6G_298 | Triple non-canonical cWW pairs | ||
| IL_6R6G_300 | No text annotation | ||
| IL_6R6G_301 | No text annotation | ||
| IL_6R6G_302 | No text annotation | ||
| IL_6R6G_303 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6R6G_001 | 1/5/112:116, 1/5/155:160, 1/5/269:272 | No text annotation | ||
| J3_6R6G_002 | 1/5/373:381, 1/5/408:409, 1/8/19:21 | No text annotation | ||
| J3_6R6G_035 | 1/5/445:449, 1/5/577:581, 1/5/853:857 | No text annotation | ||
| J3_6R6G_003 | 1/5/720:722, 1/5/735:740, 1/5/819:834 | No text annotation | ||
| J3_6R6G_004 | 1/5/1091:1097, 1/5/1182:1184, 1/5/1200:1203 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6R6G_005 | 1/5/1105:1108, 1/5/1140:1144, 1/5/1169:1174 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_6R6G_006 | 1/5/1263:1264, 1/5/1339:1343, 1/5/1369:1374 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_6R6G_007 | 1/5/1506:1509, 1/5/1531:1538, 1/5/1553:1555 | No text annotation | ||
| J3_6R6G_008 | 1/5/1786:1792, 1/5/2198:2200, 1/5/2212:2215 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6R6G_009 | 1/5/1795:1798, 1/5/2178:2184, 1/5/2193:2195 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6R6G_010 | 1/5/1833:1838, 1/5/1908:1912, 1/5/1929:1930 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6R6G_036 | 1/5/1844:1847, 1/5/1864:1869, 1/5/1894:1901 | No text annotation | ||
| J3_6R6G_037 | 1/5/1844:1849, 1/5/1858:1869, 1/5/1894:1901 | No text annotation | ||
| J3_6R6G_011 | 1/5/1944:1948, 1/5/1965:1968, 1/5/2150:2160 | No text annotation | ||
| J3_6R6G_012 | 1/5/1968:1969, 1/5/1978:1982, 1/5/2149:2150 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6R6G_039 | 1/5/1991:1995, 1/5/2130:2131, 1/5/2135:2140 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_6R6G_013 | 1/5/2635:2637, 1/5/2656:2660, 1/5/2738:2743 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_6R6G_014 | 1/5/2673:2676, 1/5/2691:2706, 1/5/2725:2728 | No text annotation | homologous J3_8P9A_060 J3_28639.1 | |
| J3_6R6G_040 | 1/5/2798:2800, 1/5/2901:2912, 1/5/2940:2945 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6R6G_015 | 1/5/2811:2813, 1/5/2837:2839, 1/5/2848:2853 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_6R6G_016 | 1/5/3033:3036, 1/5/3061:3063, 1/5/3077:3083 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_6R6G_041 | 1/5/3312:3317, 1/5/3361:3365, 1/5/3416:3431 | No text annotation | ||
| J3_6R6G_017 | 1/5/3450:3452, 1/5/3466:3471, 1/5/3535:3538 | No text annotation | ||
| J3_6R6G_018 | 1/7/9:14, 1/7/65:66, 1/7/109:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_6R6G_019 | 1/8/44:45, 1/8/58:64, 1/8/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_6R6G_020 | 1/AF/3:4, 1/AF/23:28, 1/AF/43:44 | No text annotation | geometric J3_1E8O_001 J3_11375.2 | |
| J3_6R6G_021 | 1/AF/128:129, 1/AF/168:175, 1/AF/221:222 | No text annotation | geometric J3_1MFQ_002 J3_70599.1 | |
| J3_6R6G_022 | 1/K/40:41, 1/K/481:487, 1/K/512:514 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_6R6G_042 | 1/K/40:47, 1/K/479:487, 1/K/512:514 | No text annotation | homologous J3_8C3A_083 NA | |
| J3_6R6G_043 | 1/K/682:684, 1/K/918:922, 1/K/1022:1023 | No text annotation | geometric J3_4V88_080 NA | |
| J3_6R6G_044 | 1/K/682:684, 1/K/918:923, 1/K/1019:1023 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_6R6G_024 | 1/K/816:819, 1/K/829:831, 1/K/843:848 | No text annotation | homologous J3_4V88_032 NA | |
| J3_6R6G_025 | 1/K/938:941, 1/K/985:993, 1/K/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6R6G_026 | 1/K/1094:1096, 1/K/1136:1140, 1/K/1147:1151 | No text annotation | ||
| J3_6R6G_027 | 1/K/1218:1221, 1/K/1645:1651, 1/K/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
| J3_6R6G_028 | 1/K/1225:1228, 1/K/1530:1532, 1/K/1638:1641 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_6R6G_029 | 1/K/1237:1244, 1/K/1255:1266, 1/K/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6R6G_030 | 1/K/1272:1277, 1/K/1320:1324, 1/K/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_6R6G_031 | 1/K/1340:1345, 1/K/1384:1389, 1/K/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_99563.1 | |
| J3_6R6G_032 | 1/K/1350:1351, 1/K/1360:1363, 1/K/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_6R6G_033 | 1/K/1391:1395, 1/K/1450:1456, 1/K/1470:1479 | No text annotation | ||
| J3_6R6G_034 | 1/K/1532:1536, 1/K/1597:1604, 1/K/1635:1638 | No text annotation | homologous J3_4V88_041 NA | |
| J4_6R6G_017 | 1/2/7:10, 1/2/25:27, 1/2/43:52, 1/2/62:66 | No text annotation | ||
| J4_6R6G_002 | 1/3/7:10, 1/3/25:27, 1/3/43:49, 1/3/65:66 | tRNA junction | homologous J4_5AXM_001 J4_70449.28 | |
| J4_6R6G_003 | 1/5/111:112, 1/5/272:277, 1/5/298:304, 1/5/321:324 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_6R6G_004 | 1/5/190:193, 1/5/209:216, 1/5/220:222, 1/5/234:238 | No text annotation | ||
| J4_6R6G_005 | 1/5/345:361, 1/5/368:381, 1/5/408:409, 1/8/19:24 | No text annotation | ||
| J4_6R6G_006 | 1/5/345:361, 1/5/368:384, 1/5/395:409, 1/8/19:24 | No text annotation | ||
| J4_6R6G_007 | 1/5/588:589, 1/5/692:698, 1/5/708:720, 1/5/834:845 | No text annotation | ||
| J4_6R6G_008 | 1/5/1758:1764, 1/5/1782:1784, 1/5/2217:2222, 1/5/2554:2555 | No text annotation | ||
| J4_6R6G_009 | 1/5/1799:1803, 1/5/1827:1832, 1/5/1931:1932, 1/5/2170:2177 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_6R6G_010 | 1/5/2011:2012, 1/5/2030:2035, 1/5/2085:2091, 1/5/2111:2112 | No text annotation | ||
| J4_6R6G_011 | 1/5/2332:2336, 1/5/2348:2352, 1/5/2388:2392, 1/5/2519:2524 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_6R6G_012 | 1/5/2394:2396, 1/5/2450:2451, 1/5/2469:2478, 1/5/2512:2517 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_6R6G_013 | 1/5/2801:2805, 1/5/2859:2861, 1/5/2888:2889, 1/5/2898:2900 | No text annotation | ||
| J4_6R6G_014 | 1/5/3157:3160, 1/5/3190:3191, 1/5/3246:3248, 1/5/3282:3285 | No text annotation | ||
| J4_6R6G_015 | 1/K/98:106, 1/K/355:357, 1/K/405:409, 1/K/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_6R6G_016 | 1/K/671:673, 1/K/1032:1037, 1/K/1078:1089, 1/K/1160:1161 | No text annotation | homologous J4_8C3A_022 NA | |
| J5_6R6G_001 | 1/5/20:21, 1/8/35:42, 1/8/101:106, 1/8/113:114, 1/8/136:137 | No text annotation | ||
| J5_6R6G_002 | 1/5/896:901, 1/5/1076:1079, 1/5/1218:1221, 1/5/1681:1683, 1/5/1738:1744 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_6R6G_003 | 1/5/2248:2256, 1/5/2280:2281, 1/5/2311:2312, 1/5/2316:2324, 1/5/2533:2535 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_6R6G_011 | 1/5/2601:2608, 1/5/2962:2970, 1/5/3014:3023, 1/5/3098:3104, 1/5/3122:3127 | No text annotation | ||
| J5_6R6G_005 | 1/5/2618:2621, 1/5/2758:2761, 1/5/2774:2775, 1/5/2797:2798, 1/5/2945:2951 | No text annotation | homologous J5_8C3A_006 NA | |
| J5_6R6G_006 | 1/K/30:34, 1/K/521:527, 1/K/558:563, 1/K/592:595, 1/K/641:644 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_6R6G_007 | 1/K/30:34, 1/K/521:527, 1/K/558:565, 1/K/585:595, 1/K/641:644 | No text annotation | ||
| J5_6R6G_008 | 1/K/53:56, 1/K/89:96, 1/K/434:436, 1/K/457:459, 1/K/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_6R6G_009 | 1/K/123:129, 1/K/183:185, 1/K/214:219, 1/K/302:312, 1/K/337:341 | No text annotation | ||
| J5_6R6G_010 | 1/K/685:690, 1/K/736:744, 1/K/797:800, 1/K/865:874, 1/K/912:917 | No text annotation | ||
| J6_6R6G_001 | 1/5/21:26, 1/5/57:67, 1/5/74:78, 1/5/105:109, 1/5/326:333, 1/8/33:35 | No text annotation | ||
| J6_6R6G_002 | 1/5/913:916, 1/5/942:946, 1/5/953:957, 1/5/979:982, 1/5/1024:1026, 1/5/1059:1064 | No text annotation | ||
| J6_6R6G_003 | 1/5/2618:2621, 1/5/2758:2761, 1/5/2774:2775, 1/5/2797:2800, 1/5/2901:2912, 1/5/2940:2951 | No text annotation | ||
| J7_6R6G_001 | 1/5/1226:1231, 1/5/1244:1245, 1/5/1389:1392, 1/5/1416:1421, 1/5/1432:1436, 1/5/1614:1615, 1/5/1671:1676 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6R6G_038 | No text annotation | ||
| J3_6R6G_023 | No text annotation | ||
| J4_6R6G_001 | No text annotation | ||
| J5_6R6G_004 | No text annotation |
Coloring options: