5T2A Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5T2A_006 | 1/2/265:272 | No text annotation Not in a motif group | geometric HL_5J7L_024 HL_71554.2 | |
| HL_5T2A_038 | 1/A/36:43 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.2 | |
| HL_5T2A_039 | 1/A/67:72 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_5T2A_040 | 1/A/89:95 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_5T2A_041 | 1/A/129:136 | No text annotation Not in a motif group | ||
| HL_5T2A_042 | 1/A/204:212 | No text annotation Not in a motif group | geometric HL_4OOG_001 HL_28980.1 | |
| HL_5T2A_043 | 1/A/221:232 | No text annotation Not in a motif group | geometric HL_3SUX_001 HL_85445.1 | |
| HL_5T2A_044 | 1/A/245:249 | No text annotation Not in a motif group | homologous HL_8C3A_006 HL_98984.2 | |
| HL_5T2A_045 | 1/A/253:261 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.9 | |
| HL_5T2A_046 | 1/A/315:324 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_5T2A_047 | 1/A/341:350 | No text annotation Not in a motif group | homologous HL_5TBW_009 HL_12078.2 | |
| HL_5T2A_048 | 1/A/397:402 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.2 | |
| HL_5T2A_049 | 1/A/423:428 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.2 | |
| HL_5T2A_050 | 1/A/520:531 | No text annotation Not in a motif group | ||
| HL_5T2A_051 | 1/A/671:682 | No text annotation Not in a motif group | geometric HL_4V7M_040 HL_22031.1 | |
| HL_5T2A_052 | 1/A/717:733 | No text annotation Not in a motif group | ||
| HL_5T2A_053 | 1/A/745:750 | GNRA Not in a motif group | homologous HL_5TBW_016 HL_42097.2 | |
| HL_5T2A_054 | 1/A/758:764 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_91104.1 | |
| HL_5T2A_057 | 1/A/895:900 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.2 | |
| HL_5T2A_058 | 1/A/927:936 | No text annotation Not in a motif group | ||
| HL_5T2A_059 | 1/A/961:969 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_5T2A_060 | 1/A/1009:1014 | No text annotation Not in a motif group | homologous HL_5TBW_022 HL_94803.2 | |
| HL_5T2A_062 | 1/A/1130:1136 | No text annotation Not in a motif group | ||
| HL_5T2A_063 | 1/A/1183:1189 | GNRA Not in a motif group | homologous HL_5TBW_025 HL_42097.2 | |
| HL_5T2A_064 | 1/A/1205:1212 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_5T2A_067 | 1/A/1494:1499 | GNRA Not in a motif group | homologous HL_5TBW_030 HL_42097.2 | |
| HL_5T2A_069 | 1/A/1613:1619 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_5T2A_070 | 1/A/1651:1658 | T-loop with 1 bulged base Not in a motif group | geometric HL_5TBW_005 HL_89380.2 | |
| HL_5T2A_072 | 1/A/1751:1761 | No text annotation Not in a motif group | homologous HL_8C3A_035 HL_69023.2 | |
| HL_5T2A_073 | 1/B/26:33 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.2 | |
| HL_5T2A_074 | 1/B/44:50 | No text annotation Not in a motif group | homologous HL_8C3A_042 HL_42097.2 | |
| HL_5T2A_075 | 1/B/106:111 | UNCG Not in a motif group | geometric HL_4LFB_031 HL_03562.2 | |
| HL_5T2A_076 | 1/B/318:328 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.5 | |
| HL_5T2A_077 | 1/B/347:353 | No text annotation Not in a motif group | geometric HL_2ZNI_001 HL_75407.1 | |
| HL_5T2A_078 | 1/B/402:409 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_24068.2 | |
| HL_5T2A_079 | 1/B/436:446 | No text annotation Not in a motif group | homologous HL_8C3A_049 HL_71924.2 | |
| HL_5T2A_080 | 1/B/475:483 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.1 | |
| HL_5T2A_081 | 1/B/552:561 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.6 | |
| HL_5T2A_082 | 1/B/979:987 | No text annotation Not in a motif group | homologous HL_5TBW_054 HL_53171.2 | |
| HL_5T2A_083 | 1/B/996:1008 | No text annotation Not in a motif group | homologous HL_8C3A_056 HL_19870.6 | |
| HL_5T2A_084 | 1/B/1036:1044 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_5T2A_085 | 1/B/1056:1063 | No text annotation Not in a motif group | homologous HL_8C3A_058 HL_12078.2 | |
| HL_5T2A_086 | 1/B/1088:1096 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_5T2A_087 | 1/B/1108:1113 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.2 | |
| HL_5T2A_088 | 1/B/1150:1158 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.1 | |
| HL_5T2A_089 | 1/B/1214:1222 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_5T2A_090 | 1/B/1271:1278 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_91104.1 | |
| HL_5T2A_091 | 1/B/1294:1300 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_5T2A_092 | 1/B/1337:1342 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.2 | |
| HL_5T2A_093 | 1/B/1395:1401 | No text annotation Not in a motif group | geometric HL_7A0S_061 HL_43656.2 | |
| HL_5T2A_095 | 1/B/1442:1457 | No text annotation Not in a motif group | ||
| HL_5T2A_096 | 1/C/138:147 | No text annotation Not in a motif group | geometric HL_7RQB_001 HL_99167.1 | |
| HL_5T2A_098 | 1/C/198:204 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_5T2A_100 | 1/D/37:42 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_87939.1 | |
| HL_5T2A_101 | 1/D/87:92 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.2 | |
| HL_5T2A_102 | 1/E/5:10 | GNRA Not in a motif group | geometric HL_5TBW_030 HL_42097.2 | |
| HL_5T2A_103 | 1/E/53:61 | No text annotation Not in a motif group | geometric HL_5TBW_037 HL_60812.1 | |
| HL_5T2A_104 | 1/E/115:123 | No text annotation Not in a motif group | geometric HL_6UFM_001 HL_09136.1 | |
| HL_5T2A_106 | 1/F/30:33 | No text annotation Not in a motif group | geometric HL_4L8H_001 HL_53837.1 | |
| HL_5T2A_107 | 1/F/38:41 | No text annotation Not in a motif group | geometric HL_6MSF_001 HL_38927.2 | |
| HL_5T2A_108 | 1/G/7:17 | No text annotation Not in a motif group | geometric HL_3IGI_005 HL_96598.1 | |
| HL_5T2A_109 | 1/G/53:58 | GNRA Not in a motif group | geometric HL_4V9F_066 HL_42097.2 | |
| HL_5T2A_110 | 1/G/96:101 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_5T2A_111 | 1/G/138:152 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_5T2A_112 | 1/H/9:17 | No text annotation Not in a motif group | geometric HL_5TBW_070 HL_27930.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5T2A_001 | No text annotation | ||
| HL_5T2A_002 | No text annotation | ||
| HL_5T2A_003 | No text annotation | ||
| HL_5T2A_004 | GNRA | ||
| HL_5T2A_005 | No text annotation | ||
| HL_5T2A_007 | T-loop with 1 bulged base | ||
| HL_5T2A_008 | No text annotation | ||
| HL_5T2A_009 | No text annotation | ||
| HL_5T2A_010 | No text annotation | ||
| HL_5T2A_011 | No text annotation | ||
| HL_5T2A_012 | UNCG | ||
| HL_5T2A_013 | No text annotation | ||
| HL_5T2A_014 | No text annotation | ||
| HL_5T2A_015 | No text annotation | ||
| HL_5T2A_016 | Other HL | ||
| HL_5T2A_017 | No text annotation | ||
| HL_5T2A_018 | No text annotation | ||
| HL_5T2A_019 | No text annotation | ||
| HL_5T2A_020 | No text annotation | ||
| HL_5T2A_021 | No text annotation | ||
| HL_5T2A_022 | No text annotation | ||
| HL_5T2A_023 | Other HL | ||
| HL_5T2A_024 | No text annotation | ||
| HL_5T2A_025 | No text annotation | ||
| HL_5T2A_026 | Other HL | ||
| HL_5T2A_027 | GNRA | ||
| HL_5T2A_028 | No text annotation | ||
| HL_5T2A_029 | No text annotation | ||
| HL_5T2A_030 | GNRA | ||
| HL_5T2A_031 | No text annotation | ||
| HL_5T2A_032 | No text annotation | ||
| HL_5T2A_033 | No text annotation | ||
| HL_5T2A_034 | No text annotation | ||
| HL_5T2A_035 | No text annotation | ||
| HL_5T2A_036 | No text annotation | ||
| HL_5T2A_037 | Other HL | ||
| HL_5T2A_055 | No text annotation | ||
| HL_5T2A_056 | No text annotation | ||
| HL_5T2A_061 | No text annotation | ||
| HL_5T2A_065 | No text annotation | ||
| HL_5T2A_066 | No text annotation | ||
| HL_5T2A_068 | No text annotation | ||
| HL_5T2A_071 | No text annotation | ||
| HL_5T2A_094 | No text annotation | ||
| HL_5T2A_097 | No text annotation | ||
| HL_5T2A_099 | No text annotation | ||
| HL_5T2A_105 | No text annotation | ||
| HL_5T2A_113 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5T2A_013 | 1/2/198:199, 1/2/226:228 | Single bulged U Not in a motif group | geometric IL_6JDV_003 IL_83039.14 | |
| IL_5T2A_069 | 1/A/29:36, 1/A/43:51 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
| IL_5T2A_070 | 1/A/80:88, 1/A/96:102 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_5T2A_071 | 1/A/119:122, 1/A/148:149 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5J7L_306 IL_50694.2 | |
| IL_5T2A_072 | 1/A/122:123, 1/A/143:148 | No text annotation Not in a motif group | homologous IL_5TBW_007 IL_19724.2 | |
| IL_5T2A_073 | 1/A/124:125, 1/A/140:142 | No text annotation Not in a motif group | ||
| IL_5T2A_074 | 1/A/417:420, 1/A/431:444 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_5T2A_075 | 1/A/468:472, 1/A/661:665 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_5T2A_076 | 1/A/476:478, 1/A/656:657 | Major groove platform Not in a motif group | geometric IL_4V9F_082 IL_27635.2 | |
| IL_5T2A_077 | 1/A/483:486, 1/A/647:651 | No text annotation Not in a motif group | ||
| IL_5T2A_078 | 1/A/487:489, 1/A/645:646 | Single bulged G Not in a motif group | geometric IL_4V88_442 IL_00225.3 | |
| IL_5T2A_079 | 1/A/497:498, 1/A/562:565 | Multiple bulged bases Not in a motif group | geometric IL_5WLH_001 IL_44546.1 | |
| IL_5T2A_080 | 1/A/501:506, 1/A/549:559 | No text annotation Not in a motif group | ||
| IL_5T2A_081 | 1/A/508:509, 1/A/545:547 | Single bulged G Not in a motif group | geometric IL_4WF9_023 IL_00225.3 | |
| IL_5T2A_082 | 1/A/510:513, 1/A/538:544 | No text annotation Not in a motif group | ||
| IL_5T2A_083 | 1/A/701:703, 1/A/842:844 | No text annotation Not in a motif group | homologous IL_5TBW_021 IL_95997.1 | |
| IL_5T2A_084 | 1/A/776:780, 1/A/801:806 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_5T2A_085 | 1/A/781:783, 1/A/798:800 | No text annotation Not in a motif group | geometric IL_4V88_470 IL_51629.2 | |
| IL_5T2A_086 | 1/A/812:816, 1/A/828:833 | Other IL Not in a motif group | geometric IL_4WF9_084 IL_05145.2 | |
| IL_5T2A_087 | 1/A/854:856, 1/A/989:991 | No text annotation Not in a motif group | homologous IL_5TBW_027 IL_95997.1 | |
| IL_5T2A_088 | 1/A/856:860, 1/A/982:989 | No text annotation Not in a motif group | geometric IL_5TBW_028 IL_17470.6 | |
| IL_5T2A_089 | 1/A/879:880, 1/A/946:948 | No text annotation Not in a motif group | homologous IL_8C3A_031 IL_37497.3 | |
| IL_5T2A_090 | 1/A/884:885, 1/A/910:912 | No text annotation Not in a motif group | homologous IL_8C3A_032 IL_00225.3 | |
| IL_5T2A_091 | 1/A/885:889, 1/A/906:910 | Triple sheared Not in a motif group | geometric IL_4V9F_027 IL_56467.8 | |
| IL_5T2A_092 | 1/A/891:893, 1/A/902:904 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_5T2A_093 | 1/A/920:923, 1/A/939:941 | Major groove platform with extra cWW Not in a motif group | homologous IL_5TBW_031 IL_05564.2 | |
| IL_5T2A_094 | 1/A/924:926, 1/A/937:938 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.14 | |
| IL_5T2A_095 | 1/A/958:960, 1/A/970:974 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
| IL_5T2A_096 | 1/A/995:996, 1/A/1465:1467 | Single bulged G Not in a motif group | geometric IL_4WF9_023 IL_00225.3 | |
| IL_5T2A_097 | 1/A/1005:1007, 1/A/1016:1018 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_95997.1 | |
| IL_5T2A_098 | 1/A/1020:1021, 1/A/1168:1170 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_5T2A_099 | 1/A/1027:1033, 1/A/1158:1162 | No text annotation Not in a motif group | ||
| IL_5T2A_100 | 1/A/1034:1036, 1/A/1156:1157 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.3 | |
| IL_5T2A_101 | 1/A/1043:1048, 1/A/1103:1108 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_5T2A_102 | 1/A/1048:1049, 1/A/1101:1103 | No text annotation Not in a motif group | homologous IL_8C3A_042 IL_42622.2 | |
| IL_5T2A_103 | 1/A/1050:1055, 1/A/1097:1100 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_02509.1 | |
| IL_5T2A_104 | 1/A/1057:1060, 1/A/1092:1095 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_041 IL_30621.3 | |
| IL_5T2A_105 | 1/A/1060:1062, 1/A/1090:1092 | No text annotation Not in a motif group | geometric IL_5TBW_127 IL_95997.1 | |
| IL_5T2A_106 | 1/A/1121:1123, 1/A/1142:1143 | Single bulged U Not in a motif group | geometric IL_3TZR_002 IL_83039.14 | |
| IL_5T2A_107 | 1/A/1125:1129, 1/A/1137:1140 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.3 | |
| IL_5T2A_108 | 1/A/1177:1179, 1/A/1193:1195 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_5T2A_109 | 1/A/1180:1182, 1/A/1190:1192 | No text annotation Not in a motif group | homologous IL_8C3A_050 IL_52767.2 | |
| IL_5T2A_110 | 1/A/1224:1228, 1/A/1398:1402 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.2 | |
| IL_5T2A_111 | 1/A/1230:1237, 1/A/1387:1396 | No text annotation Not in a motif group | homologous IL_8C3A_052 IL_15861.7 | |
| IL_5T2A_112 | 1/A/1237:1240, 1/A/1386:1387 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
| IL_5T2A_113 | 1/A/1240:1243, 1/A/1384:1386 | Isolated cWH basepair Not in a motif group | geometric IL_4E5C_001 IL_51629.2 | |
| IL_5T2A_114 | 1/A/1246:1255, 1/A/1376:1381 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
| IL_5T2A_115 | 1/A/1255:1267, 1/A/1361:1376 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_5T2A_116 | 1/A/1269:1271, 1/A/1358:1359 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.14 | |
| IL_5T2A_117 | 1/A/1412:1414, 1/A/1452:1453 | No text annotation Not in a motif group | ||
| IL_5T2A_118 | 1/A/1418:1419, 1/A/1442:1448 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_5T2A_119 | 1/A/1468:1470, 1/A/1520:1523 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_5T2A_120 | 1/A/1477:1479, 1/A/1511:1513 | Isolated near basepair Not in a motif group | geometric IL_3NJ7_003 IL_52767.2 | |
| IL_5T2A_121 | 1/A/1479:1486, 1/A/1507:1511 | Kink-turn Not in a motif group | geometric IL_7RQB_047 IL_70923.2 | |
| IL_5T2A_122 | 1/A/1486:1487, 1/A/1505:1507 | Single bulged A Not in a motif group | geometric IL_5TBW_024 IL_37497.3 | |
| IL_5T2A_123 | 1/A/1489:1492, 1/A/1501:1503 | No text annotation Not in a motif group | homologous IL_8C3A_064 IL_95997.1 | |
| IL_5T2A_124 | 1/A/1536:1542, 1/B/537:542 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_5T2A_125 | 1/A/1607:1612, 1/A/1620:1623 | No text annotation Not in a motif group | homologous IL_8C3A_066 IL_93630.2 | |
| IL_5T2A_126 | 1/A/1640:1644, 1/A/1737:1742 | UAA/GAN Not in a motif group | homologous IL_5TBW_063 IL_89002.2 | |
| IL_5T2A_127 | 1/A/1645:1647, 1/A/1734:1736 | No text annotation Not in a motif group | geometric IL_5UNE_004 IL_95997.1 | |
| IL_5T2A_128 | 1/A/1674:1678, 1/A/1726:1730 | Triple sheared Not in a motif group | geometric IL_7A0S_087 IL_56467.8 | |
| IL_5T2A_129 | 1/A/1748:1750, 1/A/1762:1768 | No text annotation Not in a motif group | ||
| IL_5T2A_130 | 1/A/1775:1780, 1/B/3:8 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.1 | |
| IL_5T2A_131 | 1/B/64:70, 1/B/530:533 | No text annotation Not in a motif group | ||
| IL_5T2A_132 | 1/B/73:75, 1/B/526:527 | No text annotation Not in a motif group | ||
| IL_5T2A_133 | 1/B/78:80, 1/B/521:523 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_5T2A_134 | 1/B/81:84, 1/B/519:520 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5TBW_076 IL_50694.2 | |
| IL_5T2A_135 | 1/B/84:89, 1/B/516:519 | No text annotation Not in a motif group | homologous IL_8C3A_083 IL_82842.2 | |
| IL_5T2A_136 | 1/B/101:106, 1/B/111:117 | No text annotation Not in a motif group | homologous IL_8C3A_084 IL_65969.2 | |
| IL_5T2A_137 | 1/B/123:125, 1/B/291:293 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_5T2A_138 | 1/B/130:132, 1/B/282:286 | No text annotation Not in a motif group | ||
| IL_5T2A_139 | 1/B/311:312, 1/B/506:508 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.3 | |
| IL_5T2A_140 | 1/B/339:344, 1/B/356:363 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_5T2A_141 | 1/B/345:347, 1/B/353:355 | Isolated cWS basepair Not in a motif group | geometric IL_5TBW_047 IL_52767.2 | |
| IL_5T2A_142 | 1/B/379:382, 1/B/428:429 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_5T2A_143 | 1/B/383:384, 1/B/424:427 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_5T2A_144 | 1/B/387:393, 1/B/418:421 | No text annotation Not in a motif group | ||
| IL_5T2A_145 | 1/B/394:399, 1/B/412:417 | No text annotation Not in a motif group | ||
| IL_5T2A_146 | 1/B/459:460, 1/B/490:493 | No text annotation Not in a motif group | homologous IL_8C3A_094 IL_59677.2 | |
| IL_5T2A_147 | 1/B/460:471, 1/B/487:490 | No text annotation Not in a motif group | homologous IL_5TBW_090 IL_81589.2 | |
| IL_5T2A_148 | 1/B/574:577, 1/B/1360:1362 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_5T2A_149 | 1/B/579:581, 1/B/1355:1358 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_54678.5 | |
| IL_5T2A_150 | 1/B/592:594, 1/B/1185:1186 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.14 | |
| IL_5T2A_151 | 1/B/595:596, 1/B/1181:1184 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_5T2A_152 | 1/B/606:608, 1/B/967:970 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_5T2A_153 | 1/B/620:622, 1/B/691:693 | No text annotation Not in a motif group | geometric IL_5TBW_008 IL_95997.1 | |
| IL_5T2A_154 | 1/B/703:709, 1/B/945:949 | No text annotation Not in a motif group | homologous IL_8C3A_106 IL_74114.1 | |
| IL_5T2A_156 | 1/B/1029:1031, 1/B/1049:1053 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5TBW_099 IL_38958.7 | |
| IL_5T2A_157 | 1/B/1077:1079, 1/B/1104:1105 | Single bulged A Not in a motif group | geometric IL_5WWT_001 IL_37497.3 | |
| IL_5T2A_158 | 1/B/1080:1084, 1/B/1100:1103 | No text annotation Not in a motif group | ||
| IL_5T2A_159 | 1/B/1132:1134, 1/B/1162:1163 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_5T2A_160 | 1/B/1134:1147, 1/B/1161:1162 | No text annotation Not in a motif group | ||
| IL_5T2A_161 | 1/B/1197:1198, 1/B/1239:1241 | Major groove platform Not in a motif group | homologous IL_5TBW_102 IL_27635.2 | |
| IL_5T2A_162 | 1/B/1198:1200, 1/B/1237:1239 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_5T2A_163 | 1/B/1200:1202, 1/B/1236:1237 | Major groove platform Not in a motif group | homologous IL_5TBW_104 IL_76223.2 | |
| IL_5T2A_164 | 1/B/1202:1204, 1/B/1232:1236 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_92788.2 | |
| IL_5T2A_165 | 1/B/1209:1213, 1/B/1223:1227 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_5T2A_166 | 1/B/1250:1251, 1/B/1323:1325 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.2 | |
| IL_5T2A_167 | 1/B/1253:1255, 1/B/1317:1321 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_108 IL_90933.2 | |
| IL_5T2A_168 | 1/B/1255:1256, 1/B/1314:1317 | No text annotation Not in a motif group | homologous IL_8C3A_117 IL_71530.2 | |
| IL_5T2A_169 | 1/B/1265:1266, 1/B/1283:1286 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_111 IL_95601.3 | |
| IL_5T2A_170 | 1/B/1269:1271, 1/B/1278:1280 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_5T2A_171 | 1/B/1292:1294, 1/B/1300:1302 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_5T2A_172 | 1/B/1334:1335, 1/B/1344:1346 | No text annotation Not in a motif group | homologous IL_8C3A_122 IL_37497.3 | |
| IL_5T2A_173 | 1/B/1410:1411, 1/B/1426:1428 | Single stack bend Not in a motif group | geometric IL_4WF9_007 IL_76488.2 | |
| IL_5T2A_174 | 1/C/155:156, 1/C/184:186 | No text annotation Not in a motif group | ||
| IL_5T2A_175 | 1/C/212:217, 1/C/228:233 | No text annotation Not in a motif group | ||
| IL_5T2A_176 | 1/D/8:10, 1/D/111:113 | No text annotation Not in a motif group | geometric IL_1Z7F_002 IL_95997.1 | |
| IL_5T2A_177 | 1/D/16:17, 1/D/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.3 | |
| IL_5T2A_178 | 1/D/22:28, 1/D/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_5T2A_179 | 1/D/29:30, 1/D/49:52 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.6 | |
| IL_5T2A_180 | 1/D/33:37, 1/D/42:46 | Symmetric double minor groove platform Not in a motif group | geometric IL_5TBW_376 IL_58103.6 | |
| IL_5T2A_181 | 1/D/72:79, 1/D/99:105 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_5T2A_182 | 1/D/83:86, 1/D/93:95 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_5T2A_183 | 1/E/20:23, 1/E/208:209 | Minor groove platform Not in a motif group | geometric IL_4LFB_045 IL_93353.1 | |
| IL_5T2A_184 | 1/E/37:41, 1/E/182:186 | UAA/GAN variation Not in a motif group | geometric IL_2R8S_006 IL_17136.1 | |
| IL_5T2A_185 | 1/E/43:44, 1/E/178:180 | Single bulged U Not in a motif group | geometric IL_2R8S_004 IL_83039.14 | |
| IL_5T2A_188 | 1/F/10:11, 1/F/46:70 | No text annotation Not in a motif group | ||
| IL_5T2A_189 | 1/G/30:31, 1/G/173:175 | Single bulged A Not in a motif group | geometric IL_2VPL_002 IL_37497.3 | |
| IL_5T2A_190 | 1/G/31:35, 1/G/167:173 | No text annotation Not in a motif group | ||
| IL_5T2A_191 | 1/G/46:53, 1/G/58:64 | No text annotation Not in a motif group | homologous IL_8C3A_125 IL_04346.7 | |
| IL_5T2A_192 | 1/G/75:79, 1/G/119:122 | C-loop Not in a motif group | geometric IL_7RQB_104 IL_63596.6 | |
| IL_5T2A_193 | 1/G/79:81, 1/G/117:119 | No text annotation Not in a motif group | geometric IL_6IA2_005 IL_95997.1 | |
| IL_5T2A_194 | 1/G/82:87, 1/G/112:116 | No text annotation Not in a motif group | homologous IL_8C3A_127 IL_17136.1 | |
| IL_5T2A_195 | 1/G/91:92, 1/G/105:108 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_5T2A_196 | 1/G/130:136, 1/G/154:160 | No text annotation Not in a motif group | ||
| IL_5T2A_197 | 1/H/29:30, 1/H/106:115 | Major groove platform outside cWW Not in a motif group | geometric IL_4KZD_006 IL_16396.2 | |
| IL_5T2A_198 | 1/H/32:34, 1/H/98:104 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4PKD_001 IL_90933.2 | |
| IL_5T2A_199 | 1/H/35:41, 1/H/92:97 | No text annotation Not in a motif group | ||
| IL_5T2A_201 | 1/H/67:70, 1/H/85:88 | Double sheared Not in a motif group | geometric IL_4V9F_100 IL_09705.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5T2A_001 | Single bulged C | ||
| IL_5T2A_002 | No text annotation | ||
| IL_5T2A_003 | No text annotation | ||
| IL_5T2A_004 | Minor groove platform | ||
| IL_5T2A_005 | No text annotation | ||
| IL_5T2A_006 | No text annotation | ||
| IL_5T2A_007 | Tandem non-canonical cWW pairs | ||
| IL_5T2A_008 | Multiple bulged bases | ||
| IL_5T2A_009 | No text annotation | ||
| IL_5T2A_010 | No text annotation | ||
| IL_5T2A_011 | tWH-tWH-tHW-tHW | ||
| IL_5T2A_012 | No text annotation | ||
| IL_5T2A_014 | Multiple bulged bases | ||
| IL_5T2A_015 | Kink-turn with non-sequential stacking | ||
| IL_5T2A_016 | No text annotation | ||
| IL_5T2A_017 | No text annotation | ||
| IL_5T2A_018 | No text annotation | ||
| IL_5T2A_019 | Isolated cWH basepair | ||
| IL_5T2A_020 | Single bulged U | ||
| IL_5T2A_021 | C-loop | ||
| IL_5T2A_022 | Single bulged G | ||
| IL_5T2A_023 | Self complementary | ||
| IL_5T2A_024 | No text annotation | ||
| IL_5T2A_025 | Single bulged U | ||
| IL_5T2A_026 | No text annotation | ||
| IL_5T2A_027 | No text annotation | ||
| IL_5T2A_028 | tSH-tHW-tHS | ||
| IL_5T2A_029 | No text annotation | ||
| IL_5T2A_030 | No text annotation | ||
| IL_5T2A_031 | Multiple bulged bases | ||
| IL_5T2A_032 | Major groove minor groove platform; mini C-loop | ||
| IL_5T2A_033 | No text annotation | ||
| IL_5T2A_034 | No text annotation | ||
| IL_5T2A_035 | No text annotation | ||
| IL_5T2A_036 | No text annotation | ||
| IL_5T2A_037 | No text annotation | ||
| IL_5T2A_038 | Tandem non-canonical cWW pairs | ||
| IL_5T2A_039 | Tandem non-canonical cWW pairs | ||
| IL_5T2A_040 | No text annotation | ||
| IL_5T2A_041 | Tandem non-canonical cWW pairs | ||
| IL_5T2A_042 | Kink-turn | ||
| IL_5T2A_043 | Other IL | ||
| IL_5T2A_044 | tSH-tHW-tHS | ||
| IL_5T2A_045 | No text annotation | ||
| IL_5T2A_046 | No text annotation | ||
| IL_5T2A_047 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_5T2A_048 | Single bulged A | ||
| IL_5T2A_049 | Single bulged G | ||
| IL_5T2A_050 | C-loop with extra cWW pair | ||
| IL_5T2A_051 | No text annotation | ||
| IL_5T2A_052 | No text annotation | ||
| IL_5T2A_053 | Single bulged A | ||
| IL_5T2A_054 | No text annotation | ||
| IL_5T2A_055 | No text annotation | ||
| IL_5T2A_056 | No text annotation | ||
| IL_5T2A_057 | No text annotation | ||
| IL_5T2A_058 | No text annotation | ||
| IL_5T2A_059 | No text annotation | ||
| IL_5T2A_060 | Isolated non-canonical cWW with bulges | ||
| IL_5T2A_061 | Double sheared | ||
| IL_5T2A_062 | Tandem non-canonical cWW pairs | ||
| IL_5T2A_063 | CC cWW | ||
| IL_5T2A_064 | No text annotation | ||
| IL_5T2A_065 | No text annotation | ||
| IL_5T2A_066 | No text annotation | ||
| IL_5T2A_067 | Triple sheared | ||
| IL_5T2A_068 | No text annotation | ||
| IL_5T2A_155 | No text annotation | ||
| IL_5T2A_186 | No text annotation | ||
| IL_5T2A_187 | No text annotation | ||
| IL_5T2A_200 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5T2A_012 | 1/A/864:871, 1/A/956:958, 1/A/974:978 | No text annotation Not in a motif group | ||
| J3_5T2A_013 | 1/A/880:882, 1/A/914:918, 1/A/943:946 | No text annotation Not in a motif group | homologous J3_8C3A_004 NA | |
| J3_5T2A_014 | 1/A/1586:1592, 1/B/39:41, 1/B/53:56 | No text annotation Not in a motif group | homologous J3_8C3A_006 NA | |
| J3_5T2A_015 | 1/A/1595:1598, 1/B/19:25, 1/B/34:36 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_5T2A_016 | 1/B/614:618, 1/B/695:699, 1/B/953:961 | No text annotation Not in a motif group | ||
| J3_5T2A_017 | 1/B/1027:1029, 1/B/1053:1055, 1/B/1064:1069 | No text annotation Not in a motif group | homologous J3_8C3A_010 NA | |
| J3_5T2A_018 | 1/B/1260:1263, 1/B/1288:1290, 1/B/1304:1310 | No text annotation Not in a motif group | homologous J3_5TBW_014 NA | |
| J3_5T2A_019 | 1/C/134:136, 1/C/149:155, 1/C/186:191 | No text annotation Not in a motif group | ||
| J3_5T2A_020 | 1/D/10:15, 1/D/66:68, 1/D/109:111 | No text annotation Not in a motif group | ||
| J3_5T2A_021 | 1/H/5:8, 1/H/18:25, 1/H/119:123 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5T2A_001 | No text annotation | ||
| J3_5T2A_002 | No text annotation | ||
| J3_5T2A_003 | No text annotation | ||
| J3_5T2A_004 | No text annotation | ||
| J3_5T2A_005 | No text annotation | ||
| J3_5T2A_006 | No text annotation | ||
| J3_5T2A_007 | No text annotation | ||
| J3_5T2A_008 | No text annotation | ||
| J3_5T2A_009 | No text annotation | ||
| J3_5T2A_010 | No text annotation | ||
| J3_5T2A_011 | No text annotation |
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