6ZVK Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6ZVK_001 | 1/E1/6295:6324 | No text annotation | ||
| HL_6ZVK_002 | 1/E1/6370:6386 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6ZVK_003 | 1/K3/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6ZVK_004 | 1/K3/69:80 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
| HL_6ZVK_005 | 1/K3/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_6ZVK_125 | 1/K3/197:202 | GNRA | geometric HL_5J7L_190 HL_37824.7 | |
| HL_6ZVK_131 | 1/K3/255:264 | No text annotation | ||
| HL_6ZVK_007 | 1/K3/257:262 | No text annotation | ||
| HL_6ZVK_008 | 1/K3/288:295 | No text annotation | ||
| HL_6ZVK_009 | 1/K3/322:329 | No text annotation | ||
| HL_6ZVK_010 | 1/K3/377:387 | No text annotation | ||
| HL_6ZVK_011 | 1/K3/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6ZVK_012 | 1/K3/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6ZVK_013 | 1/K3/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_6ZVK_014 | 1/K3/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6ZVK_015 | 1/K3/535:549 | No text annotation | ||
| HL_6ZVK_016 | 1/K3/566:584 | No text annotation | ||
| HL_6ZVK_017 | 1/K3/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6ZVK_127 | 1/K3/711:716 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_6ZVK_019 | 1/K3/768:775 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6ZVK_020 | 1/K3/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_6ZVK_021 | 1/K3/833:841 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_6ZVK_022 | 1/K3/884:902 | No text annotation | ||
| HL_6ZVK_023 | 1/K3/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6ZVK_024 | 1/K3/993:1000 | GNRA with extra cWW | geometric HL_7A0S_056 HL_04259.3 | |
| HL_6ZVK_025 | 1/K3/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6ZVK_026 | 1/K3/1113:1120 | No text annotation | ||
| HL_6ZVK_027 | 1/K3/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_6ZVK_028 | 1/K3/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_6ZVK_029 | 1/K3/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_6ZVK_030 | 1/K3/1295:1304 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_6ZVK_031 | 1/K3/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_6ZVK_032 | 1/K3/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6ZVK_033 | 1/K3/1420:1427 | No text annotation | ||
| HL_6ZVK_034 | 1/K3/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_6ZVK_035 | 1/K3/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6ZVK_036 | 1/K3/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6ZVK_037 | 1/K3/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6ZVK_038 | 1/K3/1763:1769 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6ZVK_039 | 1/K3/1847:1852 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_6ZVK_040 | 1/d2/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_6ZVK_041 | 1/d2/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6ZVK_042 | 1/e2/37:44 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_6ZVK_043 | 1/e2/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6ZVK_044 | 1/e2/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_6ZVK_045 | 1/e2/131:137 | No text annotation | geometric HL_6D12_001 HL_48417.5 | |
| HL_6ZVK_046 | 1/e2/204:211 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_005 NA | |
| HL_6ZVK_047 | 1/e2/222:226 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6ZVK_048 | 1/e2/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_6ZVK_049 | 1/e2/289:298 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_6ZVK_050 | 1/e2/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_6ZVK_051 | 1/e2/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6ZVK_052 | 1/e2/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6ZVK_053 | 1/e2/1003:1042 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6ZVK_054 | 1/e2/1054:1061 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_6ZVK_055 | 1/e2/1112:1161 | No text annotation | ||
| HL_6ZVK_056 | 1/e2/1178:1183 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_6ZVK_057 | 1/e2/1252:1258 | No text annotation | geometric HL_4V88_198 NA | |
| HL_6ZVK_058 | 1/e2/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_6ZVK_059 | 1/e2/1364:1373 | No text annotation | ||
| HL_6ZVK_060 | 1/e2/1389:1394 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_6ZVK_061 | 1/e2/1406:1411 | No text annotation | ||
| HL_6ZVK_062 | 1/e2/1436:1448 | No text annotation | ||
| HL_6ZVK_063 | 1/e2/1479:1486 | No text annotation | ||
| HL_6ZVK_064 | 1/e2/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_6ZVK_065 | 1/e2/1593:1602 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_6ZVK_066 | 1/e2/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6ZVK_067 | 1/e2/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6ZVK_068 | 1/e2/1708:1717 | No text annotation | ||
| HL_6ZVK_069 | 1/e2/1760:1772 | No text annotation | geometric HL_4O26_001 HL_35941.1 | |
| HL_6ZVK_070 | 1/e2/1814:1823 | No text annotation | ||
| HL_6ZVK_071 | 1/e2/1863:1869 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6ZVK_072 | 1/e2/1885:1892 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6ZVK_073 | 1/e2/1976:1988 | No text annotation | ||
| HL_6ZVK_074 | 1/e2/2005:2012 | No text annotation | geometric HL_4PQV_003 HL_97917.2 | |
| HL_6ZVK_075 | 1/e2/2129:2247 | No text annotation | ||
| HL_6ZVK_076 | 1/e2/2258:2262 | No text annotation | ||
| HL_6ZVK_077 | 1/e2/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6ZVK_078 | 1/e2/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6ZVK_079 | 1/e2/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_6ZVK_080 | 1/e2/2458:2463 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6ZVK_081 | 1/e2/2487:2491 | No text annotation | ||
| HL_6ZVK_082 | 1/e2/2523:2532 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_6ZVK_083 | 1/e2/2561:2566 | GNRA | geometric HL_5F9F_003 HL_37824.7 | |
| HL_6ZVK_084 | 1/e2/2578:2583 | GNRA | homologous HL_8C3A_036 NA | |
| HL_6ZVK_130 | 1/e2/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6ZVK_086 | 1/e2/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_6ZVK_087 | 1/e2/2705:2710 | No text annotation | geometric HL_4V9F_003 HL_75660.5 | |
| HL_6ZVK_088 | 1/e2/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6ZVK_089 | 1/e2/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6ZVK_090 | 1/e2/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6ZVK_091 | 1/e2/2872:2877 | UNCG | geometric HL_4LFB_011 HL_34617.5 | |
| HL_6ZVK_092 | 1/e2/2910:3584 | No text annotation | ||
| HL_6ZVK_093 | 1/e2/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6ZVK_094 | 1/e2/3639:3649 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6ZVK_095 | 1/e2/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6ZVK_096 | 1/e2/3724:3729 | GNRA | homologous HL_8C3A_048 NA | |
| HL_6ZVK_097 | 1/e2/3757:3767 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_6ZVK_132 | 1/e2/3796:3804 | No text annotation | homologous HL_8CRE_048 HL_20167.2 | |
| HL_6ZVK_099 | 1/e2/3873:3882 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_6ZVK_100 | 1/e2/3998:4004 | No text annotation | ||
| HL_6ZVK_101 | 1/e2/4102:4107 | UNCG | geometric HL_4LGT_001 HL_34617.5 | |
| HL_6ZVK_102 | 1/e2/4139:4145 | No text annotation | geometric HL_6DTD_001 HL_48417.5 | |
| HL_6ZVK_103 | 1/e2/4193:4201 | No text annotation | ||
| HL_6ZVK_104 | 1/e2/4210:4222 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_6ZVK_105 | 1/e2/4250:4258 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_6ZVK_106 | 1/e2/4270:4277 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_6ZVK_107 | 1/e2/4301:4309 | No text annotation | geometric HL_4LX6_002 HL_31585.3 | |
| HL_6ZVK_108 | 1/e2/4321:4326 | GNRA | homologous HL_5TBW_059 NA | |
| HL_6ZVK_109 | 1/e2/4352:4362 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_6ZVK_110 | 1/e2/4417:4425 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_6ZVK_111 | 1/e2/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6ZVK_112 | 1/e2/4497:4503 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6ZVK_113 | 1/e2/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6ZVK_114 | 1/e2/4603:4608 | GNRA related | geometric HL_3OXE_002 HL_04783.2 | |
| HL_6ZVK_115 | 1/e2/4646:4651 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_6ZVK_116 | 1/e2/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6ZVK_117 | 1/e2/4790:4845 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6ZVK_118 | 1/e2/4907:4914 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6ZVK_119 | 1/e2/4975:4983 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_6ZVK_120 | 1/e2/5021:5028 | No text annotation | geometric HL_7KI3_001 HL_75660.5 | |
| HL_6ZVK_121 | 1/h2/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_93438.2 | |
| HL_6ZVK_122 | 1/h2/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_6ZVK_123 | 1/h2/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6ZVK_124 | 1/h2/121:129 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6ZVK_006 | GNRA with extra cWW | ||
| HL_6ZVK_126 | No text annotation | ||
| HL_6ZVK_018 | No text annotation | ||
| HL_6ZVK_128 | tRNA anticodon loop | ||
| HL_6ZVK_129 | No text annotation | ||
| HL_6ZVK_085 | No text annotation | ||
| HL_6ZVK_098 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6ZVK_256 | 1/E1/6282:6294, 1/E1/6325:6335 | No text annotation | ||
| IL_6ZVK_001 | 1/K3/23:25, 1/K3/649:651 | Isolated non-canonical cWW pair | geometric IL_5Y85_006 IL_87907.2 | |
| IL_6ZVK_002 | 1/K3/37:40, 1/K3/514:518 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
| IL_6ZVK_003 | 1/K3/41:47, 1/K3/479:481 | No text annotation | geometric IL_4V88_387 NA | |
| IL_6ZVK_004 | 1/K3/49:51, 1/K3/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6ZVK_005 | 1/K3/63:68, 1/K3/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_6ZVK_006 | 1/K3/108:110, 1/K3/351:353 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_87907.2 | |
| IL_6ZVK_007 | 1/K3/110:115, 1/K3/348:351 | No text annotation | ||
| IL_6ZVK_258 | 1/K3/116:121, 1/K3/343:347 | No text annotation | homologous IL_8C3A_401 NA | |
| IL_6ZVK_009 | 1/K3/122:123, 1/K3/340:342 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_6ZVK_010 | 1/K3/145:151, 1/K3/167:174 | tWH-tWH-tHW-tHW | homologous IL_4V88_394 NA | |
| IL_6ZVK_011 | 1/K3/152:154, 1/K3/164:166 | Isolated non-canonical cWW contact | homologous IL_4V88_395 NA | |
| IL_6ZVK_012 | 1/K3/188:192, 1/K3/207:211 | Triple sheared | geometric IL_5J7L_274 IL_17948.2 | |
| IL_6ZVK_013 | 1/K3/240:241, 1/K3/278:281 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_6ZVK_014 | 1/K3/241:246, 1/K3/274:278 | No text annotation | ||
| IL_6ZVK_015 | 1/K3/248:249, 1/K3/270:272 | No text annotation | ||
| IL_6ZVK_016 | 1/K3/317:321, 1/K3/330:333 | No text annotation | ||
| IL_6ZVK_017 | 1/K3/359:366, 1/K3/394:403 | No text annotation | ||
| IL_6ZVK_018 | 1/K3/366:371, 1/K3/393:394 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_6ZVK_019 | 1/K3/411:413, 1/K3/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6ZVK_020 | 1/K3/437:439, 1/K3/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6ZVK_021 | 1/K3/487:489, 1/K3/511:512 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
| IL_6ZVK_259 | 1/K3/487:491, 1/K3/510:512 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_6ZVK_260 | 1/K3/491:497, 1/K3/505:510 | No text annotation | ||
| IL_6ZVK_023 | 1/K3/528:530, 1/K3/554:557 | Isolated non-canonical cWW contact | geometric IL_5UNE_009 IL_44465.1 | |
| IL_6ZVK_024 | 1/K3/599:608, 1/K3/635:637 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_6ZVK_025 | 1/K3/611:617, 1/K3/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6ZVK_026 | 1/K3/663:665, 1/K3/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_6ZVK_027 | 1/K3/665:671, 1/K3/1161:1162 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
| IL_6ZVK_028 | 1/K3/673:675, 1/K3/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6ZVK_029 | 1/K3/676:680, 1/K3/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6ZVK_030 | 1/K3/692:695, 1/K3/737:739 | Isolated cWH basepair | geometric IL_3R1C_031 NA | |
| IL_6ZVK_031 | 1/K3/698:699, 1/K3/731:734 | Multiple bulged bases | geometric IL_4WF9_103 IL_42626.2 | |
| IL_6ZVK_032 | 1/K3/706:708, 1/K3/719:724 | No text annotation | ||
| IL_6ZVK_033 | 1/K3/752:755, 1/K3/789:791 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_6ZVK_034 | 1/K3/757:762, 1/K3/781:787 | No text annotation | ||
| IL_6ZVK_035 | 1/K3/802:803, 1/K3/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_6ZVK_036 | 1/K3/805:807, 1/K3/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6ZVK_037 | 1/K3/807:815, 1/K3/849:856 | No text annotation | geometric IL_4V88_425 NA | |
| IL_6ZVK_038 | 1/K3/874:879, 1/K3/907:911 | No text annotation | homologous IL_8P9A_416 NA | |
| IL_6ZVK_039 | 1/K3/922:923, 1/K3/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_6ZVK_289 | 1/K3/925:926, 1/K3/1015:1017 | Single bulged U | geometric IL_8C3A_424 NA | |
| IL_6ZVK_041 | 1/K3/927:931, 1/K3/1010:1014 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6ZVK_042 | 1/K3/931:935, 1/K3/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_6ZVK_043 | 1/K3/942:945, 1/K3/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6ZVK_044 | 1/K3/952:956, 1/K3/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_6ZVK_045 | 1/K3/1041:1047, 1/K3/1071:1074 | No text annotation | ||
| IL_6ZVK_046 | 1/K3/1047:1051, 1/K3/1067:1071 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_6ZVK_290 | 1/K3/1091:1093, 1/K3/1152:1158 | No text annotation | homologous IL_8CRE_439 IL_82706.1 | |
| IL_6ZVK_048 | 1/K3/1098:1104, 1/K3/1128:1134 | No text annotation | ||
| IL_6ZVK_049 | 1/K3/1108:1110, 1/K3/1123:1124 | Minor groove platform | geometric IL_4LFB_004 IL_51454.2 | |
| IL_6ZVK_050 | 1/K3/1168:1175, 1/K3/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_6ZVK_051 | 1/K3/1203:1204, 1/K3/1694:1696 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_6ZVK_052 | 1/K3/1206:1208, 1/K3/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_6ZVK_291 | 1/K3/1230:1232, 1/K3/1526:1528 | No text annotation | homologous IL_8CRE_446 IL_87907.2 | |
| IL_6ZVK_054 | 1/K3/1235:1236, 1/K3/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6ZVK_055 | 1/K3/1267:1268, 1/K3/1514:1516 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6ZVK_056 | 1/K3/1270:1273, 1/K3/1510:1512 | No text annotation | geometric IL_4WSM_372 IL_09990.4 | |
| IL_6ZVK_265 | 1/K3/1281:1294, 1/K3/1305:1316 | No text annotation | ||
| IL_6ZVK_057 | 1/K3/1325:1327, 1/K3/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6ZVK_292 | 1/K3/1329:1335, 1/K3/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_6ZVK_059 | 1/K3/1337:1338, 1/K3/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6ZVK_293 | 1/K3/1347:1349, 1/K3/1380:1382 | No text annotation | homologous IL_8CRE_456 IL_87907.2 | |
| IL_6ZVK_061 | 1/K3/1363:1365, 1/K3/1374:1375 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_6ZVK_062 | 1/K3/1402:1405, 1/K3/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_6ZVK_294 | 1/K3/1407:1413, 1/K3/1433:1439 | No text annotation | ||
| IL_6ZVK_064 | 1/K3/1414:1417, 1/K3/1428:1432 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_6ZVK_267 | 1/K3/1414:1419, 1/K3/1428:1432 | No text annotation | ||
| IL_6ZVK_065 | 1/K3/1417:1420, 1/K3/1427:1428 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_6ZVK_066 | 1/K3/1453:1456, 1/K3/1470:1475 | No text annotation | ||
| IL_6ZVK_067 | 1/K3/1537:1539, 1/K3/1594:1596 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_87907.2 | |
| IL_6ZVK_269 | 1/K3/1541:1558, 1/K3/1577:1592 | No text annotation | ||
| IL_6ZVK_068 | 1/K3/1559:1563, 1/K3/1572:1576 | No text annotation | ||
| IL_6ZVK_069 | 1/K3/1604:1610, 1/K3/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_6ZVK_070 | 1/K3/1700:1702, 1/K3/1833:1836 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6ZVK_071 | 1/K3/1702:1705, 1/K3/1829:1833 | No text annotation | homologous IL_4V88_464 NA | |
| IL_6ZVK_072 | 1/K3/1706:1708, 1/K3/1826:1828 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_6ZVK_270 | 1/K3/1706:1711, 1/K3/1822:1828 | No text annotation | ||
| IL_6ZVK_073 | 1/K3/1708:1711, 1/K3/1822:1826 | No text annotation | ||
| IL_6ZVK_074 | 1/K3/1714:1716, 1/K3/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_6ZVK_075 | 1/K3/1717:1720, 1/K3/1813:1816 | Double sheared | geometric IL_4V88_468 NA | |
| IL_6ZVK_076 | 1/K3/1720:1722, 1/K3/1812:1813 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_6ZVK_077 | 1/K3/1729:1731, 1/K3/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6ZVK_078 | 1/K3/1733:1736, 1/K3/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_6ZVK_079 | 1/K3/1739:1741, 1/K3/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_87907.2 | |
| IL_6ZVK_080 | 1/K3/1742:1746, 1/K3/1788:1792 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_6ZVK_081 | 1/K3/1750:1751, 1/K3/1782:1784 | Multiple bulged bases | geometric IL_8C3A_142 NA | |
| IL_6ZVK_082 | 1/K3/1751:1753, 1/K3/1779:1782 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_6ZVK_083 | 1/d2/15:16, 1/d2/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6ZVK_084 | 1/d2/21:27, 1/d2/52:57 | No text annotation | ||
| IL_6ZVK_085 | 1/d2/28:29, 1/d2/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_6ZVK_086 | 1/d2/32:36, 1/d2/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_6ZVK_087 | 1/d2/71:78, 1/d2/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6ZVK_088 | 1/d2/79:81, 1/d2/95:97 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_07785.1 | |
| IL_6ZVK_089 | 1/d2/82:85, 1/d2/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6ZVK_090 | 1/e2/6:7, 1/h2/149:151 | Single bulged C | geometric IL_7A0S_032 IL_61258.15 | |
| IL_6ZVK_091 | 1/e2/12:14, 1/h2/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6ZVK_092 | 1/e2/16:18, 1/h2/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_6ZVK_093 | 1/e2/26:27, 1/e2/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6ZVK_094 | 1/e2/30:37, 1/e2/44:52 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_6ZVK_095 | 1/e2/81:88, 1/e2/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6ZVK_096 | 1/e2/118:121, 1/e2/152:153 | Multiple bulged bases | geometric IL_5XWP_001 IL_82107.4 | |
| IL_6ZVK_271 | 1/e2/118:122, 1/e2/147:153 | No text annotation | ||
| IL_6ZVK_097 | 1/e2/121:122, 1/e2/147:152 | No text annotation | homologous IL_5TBW_007 NA | |
| IL_6ZVK_098 | 1/e2/125:126, 1/e2/142:144 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_6ZVK_099 | 1/e2/168:173, 1/e2/263:267 | No text annotation | ||
| IL_6ZVK_100 | 1/e2/180:182, 1/e2/255:256 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_6ZVK_101 | 1/e2/184:189, 1/e2/252:253 | Multiple bulged bases | geometric IL_1KXK_003 IL_42626.2 | |
| IL_6ZVK_102 | 1/e2/195:196, 1/e2/244:246 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_6ZVK_103 | 1/e2/199:201, 1/e2/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6ZVK_104 | 1/e2/339:342, 1/h2/32:33 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 IL_95583.2 | |
| IL_6ZVK_105 | 1/e2/348:350, 1/h2/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6ZVK_106 | 1/e2/387:390, 1/e2/401:414 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_6ZVK_107 | 1/e2/415:421, 1/h2/13:19 | Triple sheared with non-canonical cWW | geometric IL_7A0S_001 IL_04021.2 | |
| IL_6ZVK_108 | 1/e2/443:446, 1/e2/1300:1304 | No text annotation | ||
| IL_6ZVK_109 | 1/e2/459:460, 1/e2/695:697 | No text annotation | ||
| IL_6ZVK_110 | 1/e2/462:464, 1/e2/691:693 | Isolated non-canonical cWW pair | geometric IL_5TBW_068 NA | |
| IL_6ZVK_111 | 1/e2/466:472, 1/e2/682:689 | No text annotation | ||
| IL_6ZVK_295 | 1/e2/482:486, 1/e2/670:672 | Isolated non-canonical cWW pair | geometric IL_5T3K_001 IL_57744.1 | |
| IL_6ZVK_113 | 1/e2/488:494, 1/e2/660:668 | No text annotation | ||
| IL_6ZVK_114 | 1/e2/497:499, 1/e2/655:657 | No text annotation | ||
| IL_6ZVK_115 | 1/e2/500:505, 1/e2/653:654 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_6ZVK_116 | 1/e2/508:510, 1/e2/649:650 | Single bulged A | geometric IL_6WPI_001 IL_31462.5 | |
| IL_6ZVK_117 | 1/e2/511:515, 1/e2/646:648 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_57744.1 | |
| IL_6ZVK_118 | 1/e2/520:521, 1/e2/638:641 | Minor groove platform | geometric IL_5J7L_004 IL_51454.2 | |
| IL_6ZVK_119 | 1/e2/708:709, 1/e2/1287:1289 | Single bulged G | geometric IL_4LFB_036 IL_00225.13 | |
| IL_6ZVK_120 | 1/e2/722:724, 1/e2/942:946 | No text annotation | ||
| IL_6ZVK_121 | 1/e2/726:731, 1/e2/938:940 | No text annotation | ||
| IL_6ZVK_122 | 1/e2/731:737, 1/e2/927:938 | No text annotation | ||
| IL_6ZVK_123 | 1/e2/740:742, 1/e2/922:924 | Isolated cWH basepair | geometric IL_4J50_003 IL_10167.5 | |
| IL_6ZVK_272 | 1/e2/745:751, 1/e2/911:919 | No text annotation | ||
| IL_6ZVK_273 | 1/e2/751:755, 1/e2/908:911 | No text annotation | geometric IL_4DB2_001 IL_68909.1 | |
| IL_6ZVK_274 | 1/e2/757:766, 1/e2/889:906 | No text annotation | ||
| IL_6ZVK_125 | 1/e2/996:1001, 1/e2/1044:1047 | No text annotation | ||
| IL_6ZVK_126 | 1/e2/1073:1074, 1/e2/1236:1239 | Single stack bend | geometric IL_5J7L_269 IL_26793.1 | |
| IL_6ZVK_127 | 1/e2/1074:1077, 1/e2/1233:1236 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_6ZVK_128 | 1/e2/1077:1079, 1/e2/1221:1233 | No text annotation | ||
| IL_6ZVK_129 | 1/e2/1081:1082, 1/e2/1217:1219 | No text annotation | ||
| IL_6ZVK_130 | 1/e2/1082:1084, 1/e2/1213:1217 | Decoding loop related | geometric IL_5Z1I_003 NA | |
| IL_6ZVK_131 | 1/e2/1086:1087, 1/e2/1209:1211 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_6ZVK_132 | 1/e2/1097:1098, 1/e2/1197:1199 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_6ZVK_133 | 1/e2/1173:1175, 1/e2/1186:1188 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 IL_87907.2 | |
| IL_6ZVK_134 | 1/e2/1357:1360, 1/e2/1378:1382 | No text annotation | ||
| IL_6ZVK_135 | 1/e2/1360:1361, 1/e2/1376:1378 | No text annotation | ||
| IL_6ZVK_136 | 1/e2/1425:1429, 1/e2/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_6ZVK_137 | 1/e2/1431:1434, 1/e2/1450:1453 | Double sheared | geometric IL_4LFB_060 IL_09705.15 | |
| IL_6ZVK_138 | 1/e2/1467:1468, 1/e2/1496:1498 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_6ZVK_139 | 1/e2/1474:1476, 1/e2/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_6ZVK_140 | 1/e2/1520:1522, 1/e2/1655:1657 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_87907.2 | |
| IL_6ZVK_141 | 1/e2/1522:1526, 1/e2/1648:1655 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_6ZVK_142 | 1/e2/1550:1551, 1/e2/1576:1578 | Single bulged G | geometric IL_4V9F_026 IL_00225.13 | |
| IL_6ZVK_143 | 1/e2/1551:1555, 1/e2/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_6ZVK_144 | 1/e2/1586:1589, 1/e2/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6ZVK_145 | 1/e2/1590:1592, 1/e2/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6ZVK_146 | 1/e2/1624:1626, 1/e2/1636:1640 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_6ZVK_147 | 1/e2/1671:1673, 1/e2/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6ZVK_148 | 1/e2/1686:1688, 1/e2/1847:1850 | No text annotation | ||
| IL_6ZVK_276 | 1/e2/1694:1725, 1/e2/1837:1841 | No text annotation | ||
| IL_6ZVK_149 | 1/e2/1732:1737, 1/e2/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_6ZVK_150 | 1/e2/1737:1738, 1/e2/1790:1792 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_6ZVK_151 | 1/e2/1739:1744, 1/e2/1786:1789 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_6ZVK_152 | 1/e2/1746:1749, 1/e2/1781:1784 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_6ZVK_153 | 1/e2/1749:1751, 1/e2/1779:1781 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_6ZVK_154 | 1/e2/1753:1758, 1/e2/1773:1777 | No text annotation | ||
| IL_6ZVK_155 | 1/e2/1758:1760, 1/e2/1772:1773 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_6ZVK_156 | 1/e2/1857:1859, 1/e2/1873:1875 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_6ZVK_158 | 1/e2/1904:1908, 1/e2/2066:2070 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_6ZVK_159 | 1/e2/1910:1917, 1/e2/2063:2064 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_6ZVK_160 | 1/e2/1917:1919, 1/e2/2062:2063 | No text annotation | ||
| IL_6ZVK_161 | 1/e2/1919:1921, 1/e2/2061:2062 | No text annotation | ||
| IL_6ZVK_162 | 1/e2/1925:1932, 1/e2/2052:2057 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_6ZVK_163 | 1/e2/1932:1943, 1/e2/2037:2052 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6ZVK_164 | 1/e2/1945:1947, 1/e2/2034:2035 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6ZVK_165 | 1/e2/1956:1964, 1/e2/2021:2025 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_6ZVK_166 | 1/e2/1964:1967, 1/e2/2017:2021 | No text annotation | ||
| IL_6ZVK_167 | 1/e2/1972:1976, 1/e2/1988:1992 | No text annotation | ||
| IL_6ZVK_168 | 1/e2/2000:2004, 1/e2/2013:2015 | No text annotation | homologous IL_8P9A_284 IL_51387.2 | |
| IL_6ZVK_169 | 1/e2/2082:2084, 1/e2/2272:2273 | Single bulged C | geometric IL_3DIL_001 IL_61258.15 | |
| IL_6ZVK_277 | 1/e2/2086:2129, 1/e2/2247:2270 | No text annotation | ||
| IL_6ZVK_170 | 1/e2/2290:2292, 1/e2/2342:2345 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_6ZVK_171 | 1/e2/2299:2301, 1/e2/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6ZVK_172 | 1/e2/2302:2309, 1/e2/2329:2333 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_6ZVK_173 | 1/e2/2312:2314, 1/e2/2325:2326 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_6ZVK_174 | 1/e2/2358:2364, 1/e2/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5TBW_061 NA | |
| IL_6ZVK_175 | 1/e2/2415:2419, 1/e2/2427:2429 | C-loop | geometric IL_7A0S_047 IL_83150.2 | |
| IL_6ZVK_176 | 1/e2/2446:2450, 1/e2/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6ZVK_177 | 1/e2/2477:2479, 1/e2/2499:2500 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_6ZVK_178 | 1/e2/2542:2547, 1/e2/2772:2774 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_6ZVK_279 | 1/e2/2556:2557, 1/e2/2570:2572 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_6ZVK_179 | 1/e2/2589:2593, 1/e2/2752:2756 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_6ZVK_180 | 1/e2/2613:2614, 1/e2/2724:2726 | Single bulged A | geometric IL_7RQB_069 NA | |
| IL_6ZVK_181 | 1/e2/2614:2615, 1/e2/2722:2724 | Single stack bend | homologous IL_5TBW_070 NA | |
| IL_6ZVK_182 | 1/e2/2622:2623, 1/e2/2632:2634 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_6ZVK_183 | 1/e2/2646:2648, 1/e2/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_85599.2 | |
| IL_6ZVK_184 | 1/e2/2651:2653, 1/e2/2681:2682 | Single bulged G | geometric IL_7D7W_002 IL_00225.13 | |
| IL_6ZVK_185 | 1/e2/2656:2662, 1/e2/2672:2678 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6ZVK_186 | 1/e2/2704:2705, 1/e2/2710:2712 | No text annotation | ||
| IL_6ZVK_187 | 1/e2/2832:2838, 1/e2/3850:3853 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_6ZVK_280 | 1/e2/2844:2846, 1/e2/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6ZVK_189 | 1/e2/2847:2850, 1/e2/3840:3841 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_6ZVK_281 | 1/e2/2847:2855, 1/e2/3837:3841 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6ZVK_190 | 1/e2/2850:2855, 1/e2/3837:3840 | Intercalated tWH | geometric IL_4WF9_065 IL_76758.2 | |
| IL_6ZVK_191 | 1/e2/2867:2872, 1/e2/2877:2883 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_6ZVK_192 | 1/e2/2889:2891, 1/e2/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6ZVK_193 | 1/e2/2896:2897, 1/e2/3602:3605 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6ZVK_194 | 1/e2/2901:2905, 1/e2/3589:3598 | No text annotation | ||
| IL_6ZVK_195 | 1/e2/3632:3633, 1/e2/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6ZVK_196 | 1/e2/3660:3665, 1/e2/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6ZVK_197 | 1/e2/3700:3703, 1/e2/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_6ZVK_198 | 1/e2/3704:3706, 1/e2/3744:3748 | Single bulged G, near cWW | geometric IL_6CZR_128 NA | |
| IL_6ZVK_199 | 1/e2/3708:3710, 1/e2/3741:3742 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_6ZVK_282 | 1/e2/3708:3714, 1/e2/3739:3742 | No text annotation | ||
| IL_6ZVK_200 | 1/e2/3710:3714, 1/e2/3739:3741 | No text annotation | homologous IL_8C3A_092 NA | |
| IL_6ZVK_201 | 1/e2/3715:3721, 1/e2/3732:3738 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_6ZVK_202 | 1/e2/3780:3781, 1/e2/3811:3814 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_6ZVK_203 | 1/e2/3781:3792, 1/e2/3808:3811 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_6ZVK_204 | 1/e2/3895:3898, 1/e2/4563:4565 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_6ZVK_205 | 1/e2/3900:3902, 1/e2/4558:4561 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_6ZVK_206 | 1/e2/3913:3915, 1/e2/4388:4389 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_6ZVK_207 | 1/e2/3916:3917, 1/e2/4384:4387 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6ZVK_208 | 1/e2/3927:3929, 1/e2/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6ZVK_296 | 1/e2/3948:3979, 1/e2/4026:4065 | No text annotation | ||
| IL_6ZVK_209 | 1/e2/3983:3985, 1/e2/4018:4022 | No text annotation | ||
| IL_6ZVK_210 | 1/e2/3986:3987, 1/e2/4014:4017 | No text annotation | geometric IL_8C3A_145 NA | |
| IL_6ZVK_211 | 1/e2/3992:3994, 1/e2/4008:4009 | Single bulged U | geometric IL_5TBW_146 NA | |
| IL_6ZVK_212 | 1/e2/4082:4088, 1/e2/4161:4164 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_6ZVK_213 | 1/e2/4191:4192, 1/e2/4202:4204 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6ZVK_214 | 1/e2/4243:4245, 1/e2/4263:4267 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_6ZVK_215 | 1/e2/4291:4293, 1/e2/4317:4318 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_6ZVK_216 | 1/e2/4295:4298, 1/e2/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_6ZVK_217 | 1/e2/4347:4350, 1/e2/4364:4365 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_6ZVK_218 | 1/e2/4400:4401, 1/e2/4442:4444 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_6ZVK_219 | 1/e2/4401:4403, 1/e2/4440:4442 | Isolated non-canonical cWW pair | homologous IL_5TBW_103 NA | |
| IL_6ZVK_220 | 1/e2/4403:4405, 1/e2/4439:4440 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_6ZVK_297 | 1/e2/4405:4407, 1/e2/4435:4439 | No text annotation | homologous IL_8CRE_113 IL_51387.2 | |
| IL_6ZVK_222 | 1/e2/4412:4416, 1/e2/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6ZVK_223 | 1/e2/4453:4454, 1/e2/4526:4528 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6ZVK_224 | 1/e2/4456:4458, 1/e2/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_6ZVK_225 | 1/e2/4458:4459, 1/e2/4517:4520 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_6ZVK_226 | 1/e2/4466:4468, 1/e2/4489:4491 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_6ZVK_285 | 1/e2/4466:4470, 1/e2/4485:4491 | No text annotation | ||
| IL_6ZVK_227 | 1/e2/4468:4470, 1/e2/4485:4489 | No text annotation | ||
| IL_6ZVK_228 | 1/e2/4495:4497, 1/e2/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_6ZVK_229 | 1/e2/4537:4538, 1/e2/4547:4549 | Single bulged A | homologous IL_8C3A_122 NA | |
| IL_6ZVK_230 | 1/e2/4580:4585, 1/e2/4717:4723 | No text annotation | ||
| IL_6ZVK_231 | 1/e2/4590:4592, 1/e2/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6ZVK_232 | 1/e2/4596:4603, 1/e2/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_116 NA | |
| IL_6ZVK_233 | 1/e2/4624:4629, 1/e2/4669:4673 | No text annotation | geometric IL_5TBW_062 NA | |
| IL_6ZVK_234 | 1/e2/4632:4637, 1/e2/4662:4666 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_6ZVK_235 | 1/e2/4638:4640, 1/e2/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10167.5 | |
| IL_6ZVK_236 | 1/e2/4641:4642, 1/e2/4655:4658 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6ZVK_237 | 1/e2/4681:4685, 1/e2/4705:4709 | UAA/GAN | homologous IL_5TBW_120 NA | |
| IL_6ZVK_238 | 1/e2/4739:4746, 1/e2/4954:4960 | No text annotation | ||
| IL_6ZVK_239 | 1/e2/4755:4766, 1/e2/4868:4878 | No text annotation | ||
| IL_6ZVK_240 | 1/e2/4768:4772, 1/e2/4863:4866 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_77658.1 | |
| IL_6ZVK_241 | 1/e2/4772:4774, 1/e2/4862:4863 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_6ZVK_242 | 1/e2/4775:4780, 1/e2/4858:4861 | No text annotation | ||
| IL_6ZVK_243 | 1/e2/4784:4786, 1/e2/4850:4854 | No text annotation | ||
| IL_6ZVK_244 | 1/e2/4787:4788, 1/e2/4847:4849 | No text annotation | ||
| IL_6ZVK_245 | 1/e2/4885:4888, 1/e2/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_6ZVK_246 | 1/e2/4891:4896, 1/e2/4924:4928 | No text annotation | ||
| IL_6ZVK_247 | 1/e2/4899:4901, 1/e2/4920:4921 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_6ZVK_248 | 1/e2/4972:4975, 1/e2/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_6ZVK_249 | 1/e2/4992:4994, 1/e2/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_87907.2 | |
| IL_6ZVK_250 | 1/e2/4996:4997, 1/e2/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_61258.15 | |
| IL_6ZVK_251 | 1/e2/5000:5002, 1/e2/5045:5050 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_6ZVK_252 | 1/e2/5003:5009, 1/e2/5039:5044 | No text annotation | ||
| IL_6ZVK_253 | 1/e2/5012:5014, 1/e2/5035:5036 | Single bulged U | homologous IL_5TBW_134 NA | |
| IL_6ZVK_254 | 1/e2/5014:5017, 1/e2/5032:5035 | Double sheared; A in syn | geometric IL_5TBW_135 NA | |
| IL_6ZVK_255 | 1/h2/64:66, 1/h2/92:95 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6ZVK_257 | Tandem non-canonical cWW pairs | ||
| IL_6ZVK_008 | No text annotation | ||
| IL_6ZVK_022 | No text annotation | ||
| IL_6ZVK_261 | No text annotation | ||
| IL_6ZVK_040 | Tandem non-canonical cWW pairs | ||
| IL_6ZVK_262 | No text annotation | ||
| IL_6ZVK_047 | No text annotation | ||
| IL_6ZVK_263 | No text annotation | ||
| IL_6ZVK_264 | No text annotation | ||
| IL_6ZVK_053 | Tandem non-canonical cWW pairs | ||
| IL_6ZVK_058 | No text annotation | ||
| IL_6ZVK_060 | Tandem non-canonical cWW pairs | ||
| IL_6ZVK_266 | Isolated non-canonical cWW pair | ||
| IL_6ZVK_063 | No text annotation | ||
| IL_6ZVK_268 | Tandem non-canonical cWW pairs | ||
| IL_6ZVK_112 | Tandem non-canonical cWW pairs | ||
| IL_6ZVK_124 | No text annotation | ||
| IL_6ZVK_275 | No text annotation | ||
| IL_6ZVK_157 | Isolated cWS basepair | ||
| IL_6ZVK_278 | No text annotation | ||
| IL_6ZVK_188 | No text annotation | ||
| IL_6ZVK_283 | No text annotation | ||
| IL_6ZVK_284 | No text annotation | ||
| IL_6ZVK_221 | No text annotation | ||
| IL_6ZVK_286 | No text annotation | ||
| IL_6ZVK_287 | No text annotation | ||
| IL_6ZVK_288 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6ZVK_001 | 1/K3/40:41, 1/K3/481:487, 1/K3/512:514 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_6ZVK_033 | 1/K3/40:47, 1/K3/479:487, 1/K3/512:514 | No text annotation | homologous J3_8C3A_083 NA | |
| J3_6ZVK_034 | 1/K3/223:239, 1/K3/282:288, 1/K3/295:298 | No text annotation | ||
| J3_6ZVK_002 | 1/K3/682:684, 1/K3/918:922, 1/K3/1022:1023 | No text annotation | ||
| J3_6ZVK_053 | 1/K3/682:685, 1/K3/917:922, 1/K3/1022:1023 | No text annotation | ||
| J3_6ZVK_054 | 1/K3/682:685, 1/K3/917:923, 1/K3/1019:1023 | No text annotation | ||
| J3_6ZVK_003 | 1/K3/816:819, 1/K3/829:831, 1/K3/843:848 | No text annotation | homologous J3_4V88_032 NA | |
| J3_6ZVK_004 | 1/K3/938:941, 1/K3/985:993, 1/K3/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6ZVK_005 | 1/K3/1094:1096, 1/K3/1136:1140, 1/K3/1147:1151 | No text annotation | ||
| J3_6ZVK_055 | 1/K3/1214:1221, 1/K3/1645:1651, 1/K3/1673:1685 | No text annotation | ||
| J3_6ZVK_006 | 1/K3/1225:1228, 1/K3/1530:1532, 1/K3/1638:1641 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_6ZVK_007 | 1/K3/1237:1245, 1/K3/1254:1267, 1/K3/1516:1520 | No text annotation | ||
| J3_6ZVK_039 | 1/K3/1270:1277, 1/K3/1320:1324, 1/K3/1504:1512 | No text annotation | ||
| J3_6ZVK_008 | 1/K3/1273:1277, 1/K3/1320:1324, 1/K3/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_6ZVK_009 | 1/K3/1340:1345, 1/K3/1384:1389, 1/K3/1481:1486 | No text annotation | homologous J3_4V88_039 NA | |
| J3_6ZVK_010 | 1/K3/1350:1351, 1/K3/1360:1363, 1/K3/1375:1379 | No text annotation | geometric J3_8C3A_085 NA | |
| J3_6ZVK_011 | 1/K3/1391:1399, 1/K3/1447:1453, 1/K3/1475:1479 | No text annotation | ||
| J3_6ZVK_041 | 1/K3/1391:1399, 1/K3/1447:1456, 1/K3/1470:1479 | No text annotation | ||
| J3_6ZVK_012 | 1/K3/1532:1536, 1/K3/1597:1604, 1/K3/1635:1638 | No text annotation | homologous J3_4V88_041 NA | |
| J3_6ZVK_013 | 1/d2/9:14, 1/d2/65:66, 1/d2/109:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_6ZVK_014 | 1/e2/112:116, 1/e2/155:160, 1/e2/275:278 | No text annotation | ||
| J3_6ZVK_043 | 1/e2/351:367, 1/e2/374:379, 1/h2/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_6ZVK_015 | 1/e2/380:387, 1/e2/414:415, 1/h2/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6ZVK_044 | 1/e2/380:390, 1/e2/401:415, 1/h2/19:20 | No text annotation | homologous J3_8P9A_047 J3_92134.2 | |
| J3_6ZVK_016 | 1/e2/448:455, 1/e2/701:704, 1/e2/1293:1298 | No text annotation | ||
| J3_6ZVK_017 | 1/e2/711:713, 1/e2/955:976, 1/e2/1278:1285 | No text annotation | ||
| J3_6ZVK_018 | 1/e2/989:992, 1/e2/1051:1053, 1/e2/1062:1064 | No text annotation | ||
| J3_6ZVK_019 | 1/e2/1099:1108, 1/e2/1165:1169, 1/e2/1192:1196 | No text annotation | ||
| J3_6ZVK_020 | 1/e2/1531:1537, 1/e2/1622:1624, 1/e2/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6ZVK_021 | 1/e2/1545:1548, 1/e2/1580:1584, 1/e2/1609:1614 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_6ZVK_022 | 1/e2/1694:1708, 1/e2/1717:1725, 1/e2/1837:1841 | No text annotation | ||
| J3_6ZVK_056 | 1/e2/1726:1727, 1/e2/1802:1806, 1/e2/1832:1836 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_6ZVK_046 | 1/e2/1956:1970, 1/e2/1994:2000, 1/e2/2015:2025 | No text annotation | ||
| J3_6ZVK_023 | 1/e2/1967:1970, 1/e2/1994:2000, 1/e2/2015:2017 | No text annotation | ||
| J3_6ZVK_024 | 1/e2/2393:2399, 1/e2/2805:2807, 1/e2/2819:2822 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_6ZVK_025 | 1/e2/2402:2405, 1/e2/2785:2791, 1/e2/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6ZVK_026 | 1/e2/2440:2445, 1/e2/2515:2519, 1/e2/2536:2537 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6ZVK_047 | 1/e2/2451:2456, 1/e2/2465:2476, 1/e2/2501:2508 | No text annotation | ||
| J3_6ZVK_048 | 1/e2/2549:2556, 1/e2/2572:2575, 1/e2/2757:2770 | No text annotation | ||
| J3_6ZVK_027 | 1/e2/2575:2576, 1/e2/2585:2589, 1/e2/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6ZVK_049 | 1/e2/2598:2602, 1/e2/2737:2738, 1/e2/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_6ZVK_028 | 1/e2/3937:3939, 1/e2/4074:4078, 1/e2/4168:4173 | Kink-turn in J3 | geometric J3_5J7L_044 J3_89368.5 | |
| J3_6ZVK_050 | 1/e2/4091:4097, 1/e2/4112:4129, 1/e2/4155:4158 | No text annotation | ||
| J3_6ZVK_051 | 1/e2/4228:4230, 1/e2/4331:4342, 1/e2/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6ZVK_029 | 1/e2/4241:4243, 1/e2/4267:4269, 1/e2/4278:4283 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_6ZVK_030 | 1/e2/4463:4466, 1/e2/4491:4493, 1/e2/4507:4513 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_6ZVK_052 | 1/e2/4748:4754, 1/e2/4879:4884, 1/e2/4935:4952 | No text annotation | ||
| J3_6ZVK_031 | 1/e2/4970:4972, 1/e2/4986:4992, 1/e2/5059:5063 | No text annotation | ||
| J3_6ZVK_032 | 1/h2/44:45, 1/h2/58:64, 1/h2/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_6ZVK_001 | 1/K3/98:106, 1/K3/355:357, 1/K3/405:409, 1/K3/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_6ZVK_002 | 1/K3/671:673, 1/K3/1032:1037, 1/K3/1078:1089, 1/K3/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J4_6ZVK_003 | 1/e2/111:112, 1/e2/278:283, 1/e2/304:310, 1/e2/327:330 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_6ZVK_004 | 1/e2/196:199, 1/e2/215:222, 1/e2/226:228, 1/e2/240:244 | No text annotation | ||
| J4_6ZVK_005 | 1/e2/979:983, 1/e2/1070:1073, 1/e2/1239:1245, 1/e2/1265:1275 | No text annotation | ||
| J4_6ZVK_006 | 1/e2/2365:2371, 1/e2/2389:2391, 1/e2/2824:2829, 1/e2/3856:3857 | No text annotation | ||
| J4_6ZVK_007 | 1/e2/2406:2410, 1/e2/2434:2439, 1/e2/2538:2539, 1/e2/2777:2784 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_6ZVK_013 | 1/e2/2618:2619, 1/e2/2637:2642, 1/e2/2692:2698, 1/e2/2718:2719 | No text annotation | ||
| J4_6ZVK_009 | 1/e2/3634:3638, 1/e2/3650:3654, 1/e2/3690:3694, 1/e2/3821:3826 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_6ZVK_010 | 1/e2/3696:3698, 1/e2/3752:3754, 1/e2/3770:3780, 1/e2/3814:3819 | No text annotation | ||
| J4_6ZVK_011 | 1/e2/4231:4235, 1/e2/4289:4291, 1/e2/4318:4319, 1/e2/4328:4330 | No text annotation | ||
| J4_6ZVK_012 | 1/e2/4587:4590, 1/e2/4620:4621, 1/e2/4676:4678, 1/e2/4712:4715 | No text annotation | ||
| J5_6ZVK_001 | 1/K3/30:36, 1/K3/519:527, 1/K3/558:565, 1/K3/585:595, 1/K3/641:644 | No text annotation | ||
| J5_6ZVK_002 | 1/K3/53:62, 1/K3/86:96, 1/K3/434:436, 1/K3/457:461, 1/K3/468:474 | No text annotation | ||
| J5_6ZVK_010 | 1/K3/125:144, 1/K3/175:185, 1/K3/214:219, 1/K3/302:315, 1/K3/335:338 | No text annotation | ||
| J5_6ZVK_011 | 1/K3/685:690, 1/K3/741:749, 1/K3/794:800, 1/K3/865:873, 1/K3/912:917 | No text annotation | ||
| J5_6ZVK_005 | 1/e2/20:21, 1/h2/35:42, 1/h2/101:106, 1/h2/113:114, 1/h2/136:137 | No text annotation | ||
| J5_6ZVK_006 | 1/e2/1335:1340, 1/e2/1516:1519, 1/e2/1658:1661, 1/e2/2288:2290, 1/e2/2345:2351 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_6ZVK_007 | 1/e2/2855:2863, 1/e2/2887:2888, 1/e2/3613:3614, 1/e2/3618:3626, 1/e2/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_6ZVK_008 | 1/e2/3903:3910, 1/e2/4392:4400, 1/e2/4444:4453, 1/e2/4528:4534, 1/e2/4552:4557 | No text annotation | ||
| J5_6ZVK_009 | 1/e2/3920:3923, 1/e2/4188:4191, 1/e2/4204:4205, 1/e2/4227:4228, 1/e2/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
| J6_6ZVK_001 | 1/e2/21:26, 1/e2/57:67, 1/e2/74:78, 1/e2/105:109, 1/e2/332:339, 1/h2/33:35 | No text annotation | ||
| J6_6ZVK_002 | 1/e2/1352:1355, 1/e2/1384:1388, 1/e2/1395:1399, 1/e2/1418:1421, 1/e2/1464:1466, 1/e2/1499:1504 | No text annotation | ||
| J6_6ZVK_003 | 1/e2/3920:3923, 1/e2/4188:4191, 1/e2/4204:4205, 1/e2/4227:4230, 1/e2/4331:4342, 1/e2/4370:4381 | No text annotation | ||
| J7_6ZVK_002 | 1/e2/1666:1671, 1/e2/1684:1685, 1/e2/1851:1854, 1/e2/1878:1883, 1/e2/1894:1898, 1/e2/2076:2077, 1/e2/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6ZVK_035 | No text annotation | ||
| J3_6ZVK_036 | No text annotation | ||
| J3_6ZVK_037 | No text annotation | ||
| J3_6ZVK_038 | No text annotation | ||
| J3_6ZVK_040 | No text annotation | ||
| J3_6ZVK_042 | No text annotation | ||
| J3_6ZVK_045 | No text annotation | ||
| J4_6ZVK_008 | No text annotation | ||
| J5_6ZVK_003 | No text annotation | ||
| J5_6ZVK_004 | No text annotation | ||
| J7_6ZVK_001 | No text annotation |
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