7ZJW Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7ZJW_001 | 1/F/16:23 | No text annotation Not in a motif group | ||
| HL_7ZJW_002 | 1/F/33:41 | tRNA anticodon loop Not in a motif group | geometric HL_4YCO_002 HL_53597.2 | |
| HL_7ZJW_003 | 1/F/52:57 | GNRA Not in a motif group | geometric HL_5J7L_010 HL_42097.1 | |
| HL_7ZJW_004 | 1/F/66:74 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_4X4V_001 HL_22280.1 | |
| HL_7ZJW_005 | 1/I/110:115 | No text annotation Not in a motif group | ||
| HL_7ZJW_007 | 1/I/185:192 | No text annotation Not in a motif group | ||
| HL_7ZJW_008 | 1/L5/37:44 | No text annotation Not in a motif group | homologous HL_8C3A_001 HL_06192.2 | |
| HL_7ZJW_009 | 1/L5/68:73 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_7ZJW_010 | 1/L5/89:95 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_7ZJW_011 | 1/L5/131:137 | No text annotation Not in a motif group | ||
| HL_7ZJW_012 | 1/L5/204:211 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_7ZJW_013 | 1/L5/222:226 | No text annotation Not in a motif group | homologous HL_8C3A_006 HL_98984.2 | |
| HL_7ZJW_014 | 1/L5/230:238 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_7ZJW_015 | 1/L5/289:298 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_7ZJW_016 | 1/L5/314:323 | No text annotation Not in a motif group | homologous HL_8C3A_009 HL_12078.2 | |
| HL_7ZJW_017 | 1/L5/368:373 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_7ZJW_018 | 1/L5/392:399 | No text annotation Not in a motif group | geometric HL_4WF9_041 HL_49288.1 | |
| HL_7ZJW_021 | 1/L5/862:870 | No text annotation Not in a motif group | geometric HL_4FEN_001 HL_20743.3 | |
| HL_7ZJW_023 | 1/L5/1069:1074 | No text annotation Not in a motif group | ||
| HL_7ZJW_025 | 1/L5/1259:1272 | No text annotation Not in a motif group | geometric HL_4V9F_011 HL_75407.1 | |
| HL_7ZJW_026 | 1/L5/1307:1318 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_7ZJW_027 | 1/L5/1333:1338 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_7ZJW_029 | 1/L5/1392:1403 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_7ZJW_030 | 1/L5/1435:1439 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_53837.1 | |
| HL_7ZJW_031 | 1/L5/1516:1521 | No text annotation Not in a motif group | homologous HL_8C3A_019 HL_42097.1 | |
| HL_7ZJW_032 | 1/L5/1548:1557 | No text annotation Not in a motif group | homologous HL_8C3A_020 HL_39334.6 | |
| HL_7ZJW_033 | 1/L5/1582:1590 | No text annotation Not in a motif group | homologous HL_8C3A_021 HL_33817.1 | |
| HL_7ZJW_034 | 1/L5/1630:1635 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_7ZJW_035 | 1/L5/1702:1708 | No text annotation Not in a motif group | ||
| HL_7ZJW_036 | 1/L5/1755:1762 | No text annotation Not in a motif group | geometric HL_5TBW_024 HL_71554.2 | |
| HL_7ZJW_037 | 1/L5/1803:1809 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_42097.1 | |
| HL_7ZJW_038 | 1/L5/1825:1832 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_7ZJW_039 | 1/L5/1917:1927 | No text annotation Not in a motif group | homologous HL_8C3A_027 HL_07145.1 | |
| HL_7ZJW_040 | 1/L5/1945:1952 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_7ZJW_041 | 1/L5/2100:2104 | No text annotation Not in a motif group | geometric HL_5TBW_071 HL_53837.1 | |
| HL_7ZJW_042 | 1/L5/2160:2165 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_7ZJW_043 | 1/L5/2219:2227 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_89380.2 | |
| HL_7ZJW_044 | 1/L5/2263:2269 | No text annotation Not in a motif group | homologous HL_8C3A_032 HL_46680.1 | |
| HL_7ZJW_045 | 1/L5/2301:2306 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_7ZJW_046 | 1/L5/2312:2314 | No text annotation Not in a motif group | ||
| HL_7ZJW_047 | 1/L5/2330:2334 | No text annotation Not in a motif group | ||
| HL_7ZJW_048 | 1/L5/2366:2375 | No text annotation Not in a motif group | homologous HL_8C3A_035 HL_69023.2 | |
| HL_7ZJW_049 | 1/L5/2404:2409 | GNRA Not in a motif group | geometric HL_5F9F_003 HL_42097.1 | |
| HL_7ZJW_050 | 1/L5/2421:2426 | No text annotation Not in a motif group | homologous HL_8C3A_036 HL_42097.1 | |
| HL_7ZJW_051 | 1/L5/2466:2476 | No text annotation Not in a motif group | ||
| HL_7ZJW_052 | 1/L5/2507:2513 | No text annotation Not in a motif group | homologous HL_8C3A_038 HL_86373.2 | |
| HL_7ZJW_053 | 1/L5/2548:2553 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_7ZJW_054 | 1/L5/2581:2585 | No text annotation Not in a motif group | ||
| HL_7ZJW_055 | 1/L5/2635:2642 | No text annotation Not in a motif group | homologous HL_8C3A_041 HL_64430.2 | |
| HL_7ZJW_056 | 1/L5/2653:2659 | No text annotation Not in a motif group | homologous HL_8C3A_042 HL_42097.1 | |
| HL_7ZJW_057 | 1/L5/2715:2720 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_7ZJW_059 | 1/L5/3346:3350 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_7ZJW_060 | 1/L5/3370:3382 | No text annotation Not in a motif group | geometric HL_7A0S_045 HL_43667.1 | |
| HL_7ZJW_061 | 1/L5/3400:3406 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_7ZJW_062 | 1/L5/3454:3463 | No text annotation Not in a motif group | ||
| HL_7ZJW_063 | 1/L5/3489:3499 | No text annotation Not in a motif group | homologous HL_8C3A_049 HL_71924.2 | |
| HL_7ZJW_064 | 1/L5/3528:3536 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.1 | |
| HL_7ZJW_065 | 1/L5/3605:3614 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_7ZJW_067 | 1/L5/3830:3835 | No text annotation Not in a motif group | ||
| HL_7ZJW_069 | 1/L5/3939:3947 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_7ZJW_070 | 1/L5/3956:3968 | No text annotation Not in a motif group | ||
| HL_7ZJW_071 | 1/L5/3996:4004 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_7ZJW_072 | 1/L5/4016:4023 | No text annotation Not in a motif group | homologous HL_8C3A_058 HL_12078.2 | |
| HL_7ZJW_073 | 1/L5/4047:4055 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_7ZJW_074 | 1/L5/4067:4072 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.1 | |
| HL_7ZJW_075 | 1/L5/4098:4108 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.1 | |
| HL_7ZJW_076 | 1/L5/4163:4171 | No text annotation Not in a motif group | homologous HL_8C3A_062 HL_06192.2 | |
| HL_7ZJW_077 | 1/L5/4220:4227 | No text annotation Not in a motif group | homologous HL_8C3A_063 HL_88526.2 | |
| HL_7ZJW_078 | 1/L5/4243:4249 | No text annotation Not in a motif group | homologous HL_8C3A_064 HL_43656.2 | |
| HL_7ZJW_079 | 1/L5/4286:4291 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_42097.1 | |
| HL_7ZJW_080 | 1/L5/4349:4354 | No text annotation Not in a motif group | homologous HL_8C3A_066 HL_42097.1 | |
| HL_7ZJW_081 | 1/L5/4392:4397 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_7ZJW_082 | 1/L5/4434:4448 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_7ZJW_084 | 1/L5/4645:4655 | No text annotation Not in a motif group | ||
| HL_7ZJW_085 | 1/L5/4714:4722 | No text annotation Not in a motif group | homologous HL_8C3A_071 HL_27930.1 | |
| HL_7ZJW_086 | 1/L5/4760:4767 | No text annotation Not in a motif group | homologous HL_8C3A_072 HL_53837.1 | |
| HL_7ZJW_087 | 1/L7/36:41 | No text annotation Not in a motif group | homologous HL_5TBW_185 HL_87939.1 | |
| HL_7ZJW_088 | 1/L7/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_7ZJW_089 | 1/L8/47:56 | No text annotation Not in a motif group | geometric HL_4V9F_001 HL_99167.1 | |
| HL_7ZJW_090 | 1/L8/68:90 | No text annotation Not in a motif group | ||
| HL_7ZJW_091 | 1/L8/107:112 | No text annotation Not in a motif group | geometric HL_4LFB_004 HL_10278.1 | |
| HL_7ZJW_092 | 1/L8/122:128 | No text annotation Not in a motif group | geometric HL_6DB9_001 HL_79921.2 | |
| HL_7ZJW_093 | 1/S/1132:1139 | No text annotation Not in a motif group | ||
| HL_7ZJW_094 | 1/S2/7:17 | No text annotation Not in a motif group | geometric HL_4V88_186 HL_89881.2 | |
| HL_7ZJW_095 | 1/S2/69:80 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_7ZJW_096 | 1/S2/156:162 | Other HL Not in a motif group | geometric HL_4V88_188 HL_76539.2 | |
| HL_7ZJW_097 | 1/S2/188:211 | No text annotation Not in a motif group | ||
| HL_7ZJW_099 | 1/S2/289:296 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V88_191 HL_27930.1 | |
| HL_7ZJW_100 | 1/S2/323:330 | No text annotation Not in a motif group | ||
| HL_7ZJW_101 | 1/S2/378:388 | No text annotation Not in a motif group | ||
| HL_7ZJW_102 | 1/S2/417:422 | No text annotation Not in a motif group | geometric HL_4V88_194 HL_50142.2 | |
| HL_7ZJW_103 | 1/S2/442:453 | No text annotation Not in a motif group | geometric HL_4V88_195 HL_84288.1 | |
| HL_7ZJW_104 | 1/S2/460:471 | No text annotation Not in a motif group | ||
| HL_7ZJW_105 | 1/S2/499:505 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_7ZJW_106 | 1/S2/539:546 | No text annotation Not in a motif group | ||
| HL_7ZJW_107 | 1/S2/570:582 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_7ZJW_108 | 1/S2/619:624 | Other HL Not in a motif group | geometric HL_4V88_200 HL_53845.1 | |
| HL_7ZJW_110 | 1/S2/821:829 | No text annotation Not in a motif group | geometric HL_4V88_203 HL_46766.2 | |
| HL_7ZJW_111 | 1/S2/835:839 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_7ZJW_112 | 1/S2/886:902 | No text annotation Not in a motif group | homologous HL_8C3A_210 HL_07579.3 | |
| HL_7ZJW_113 | 1/S2/957:968 | No text annotation Not in a motif group | ||
| HL_7ZJW_114 | 1/S2/995:1000 | Other HL Not in a motif group | geometric HL_4V88_207 HL_87030.2 | |
| HL_7ZJW_115 | 1/S2/1055:1065 | No text annotation Not in a motif group | geometric HL_5J7L_017 HL_12326.1 | |
| HL_7ZJW_116 | 1/S2/1115:1120 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_94803.1 | |
| HL_7ZJW_117 | 1/S2/1142:1147 | Other HL Not in a motif group | geometric HL_4V88_210 HL_42097.1 | |
| HL_7ZJW_118 | 1/S2/1179:1184 | GNRA Not in a motif group | geometric HL_4LFB_020 HL_42097.1 | |
| HL_7ZJW_119 | 1/S2/1246:1255 | No text annotation Not in a motif group | geometric HL_4V88_212 HL_73530.2 | |
| HL_7ZJW_120 | 1/S2/1295:1306 | No text annotation Not in a motif group | ||
| HL_7ZJW_121 | 1/S2/1354:1359 | GNRA Not in a motif group | geometric HL_4V9F_065 HL_42097.1 | |
| HL_7ZJW_122 | 1/S2/1367:1374 | No text annotation Not in a motif group | geometric HL_4LFB_025 HL_71554.2 | |
| HL_7ZJW_123 | 1/S2/1418:1423 | No text annotation Not in a motif group | geometric HL_5SWD_005 HL_49678.1 | |
| HL_7ZJW_124 | 1/S2/1461:1467 | No text annotation Not in a motif group | geometric HL_4V88_217 HL_42097.1 | |
| HL_7ZJW_125 | 1/S2/1566:1571 | GNRA Not in a motif group | geometric HL_3E5C_002 HL_42097.1 | |
| HL_7ZJW_126 | 1/S2/1614:1627 | No text annotation Not in a motif group | ||
| HL_7ZJW_127 | 1/S2/1659:1667 | No text annotation Not in a motif group | geometric HL_4V88_220 HL_60812.1 | |
| HL_7ZJW_128 | 1/S2/1764:1770 | No text annotation Not in a motif group | ||
| HL_7ZJW_129 | 1/S2/1848:1853 | Other HL Not in a motif group | geometric HL_4V88_222 HL_16173.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7ZJW_006 | No text annotation | ||
| HL_7ZJW_019 | No text annotation | ||
| HL_7ZJW_020 | UNCG | ||
| HL_7ZJW_022 | No text annotation | ||
| HL_7ZJW_024 | No text annotation | ||
| HL_7ZJW_028 | No text annotation | ||
| HL_7ZJW_058 | No text annotation | ||
| HL_7ZJW_066 | No text annotation | ||
| HL_7ZJW_068 | No text annotation | ||
| HL_7ZJW_083 | No text annotation | ||
| HL_7ZJW_098 | No text annotation | ||
| HL_7ZJW_109 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7ZJW_001 | 1/F/1:3, 1/F/84:86 | No text annotation Not in a motif group | geometric IL_4ZC7_001 IL_95997.1 | |
| IL_7ZJW_002 | 1/F/7:9, 1/F/78:80 | No text annotation Not in a motif group | geometric IL_4KZD_003 IL_95997.1 | |
| IL_7ZJW_003 | 1/F/13:14, 1/F/25:27 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_7ZJW_004 | 1/I/175:179, 1/I/197:201 | No text annotation Not in a motif group | ||
| IL_7ZJW_005 | 1/I/180:183, 1/I/194:196 | No text annotation Not in a motif group | ||
| IL_7ZJW_006 | 1/L5/6:7, 1/L8/149:151 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_7ZJW_007 | 1/L5/12:14, 1/L8/143:144 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_7ZJW_008 | 1/L5/16:18, 1/L8/139:141 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_7ZJW_009 | 1/L5/26:27, 1/L5/55:57 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_7ZJW_010 | 1/L5/30:37, 1/L5/44:52 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_35728.2 | |
| IL_7ZJW_011 | 1/L5/81:88, 1/L5/96:102 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_7ZJW_012 | 1/L5/118:121, 1/L5/152:153 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
| IL_7ZJW_013 | 1/L5/121:122, 1/L5/147:152 | No text annotation Not in a motif group | homologous IL_8C3A_007 IL_19724.2 | |
| IL_7ZJW_014 | 1/L5/125:126, 1/L5/142:144 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_7ZJW_015 | 1/L5/168:173, 1/L5/263:267 | No text annotation Not in a motif group | ||
| IL_7ZJW_016 | 1/L5/180:182, 1/L5/255:256 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_7ZJW_017 | 1/L5/183:189, 1/L5/252:254 | No text annotation Not in a motif group | ||
| IL_7ZJW_018 | 1/L5/195:196, 1/L5/244:246 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_7ZJW_019 | 1/L5/199:201, 1/L5/214:215 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_7ZJW_021 | 1/L5/348:350, 1/L8/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.2 | |
| IL_7ZJW_022 | 1/L5/387:390, 1/L5/401:414 | No text annotation Not in a motif group | geometric IL_5TBW_014 IL_60992.6 | |
| IL_7ZJW_023 | 1/L5/390:392, 1/L5/399:401 | No text annotation Not in a motif group | geometric IL_1N33_070 IL_95997.1 | |
| IL_7ZJW_024 | 1/L5/415:421, 1/L8/13:19 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5TBW_015 IL_66414.6 | |
| IL_7ZJW_025 | 1/L5/443:446, 1/L5/1244:1248 | No text annotation Not in a motif group | ||
| IL_7ZJW_026 | 1/L5/448:450, 1/L5/1241:1242 | Single bulged C Not in a motif group | geometric IL_4C7O_003 IL_61258.12 | |
| IL_7ZJW_027 | 1/L5/459:460, 1/L5/689:691 | Single bulged C Not in a motif group | geometric IL_4WF9_035 IL_61258.12 | |
| IL_7ZJW_028 | 1/L5/462:464, 1/L5/685:687 | No text annotation Not in a motif group | geometric IL_5TBW_378 IL_95997.1 | |
| IL_7ZJW_029 | 1/L5/466:472, 1/L5/676:683 | No text annotation Not in a motif group | ||
| IL_7ZJW_030 | 1/L5/481:483, 1/L5/666:667 | Single bulged U Not in a motif group | geometric IL_2R8S_004 IL_83039.13 | |
| IL_7ZJW_031 | 1/L5/483:486, 1/L5/665:666 | Multiple bulged bases Not in a motif group | geometric IL_6JXM_001 IL_69996.1 | |
| IL_7ZJW_032 | 1/L5/488:489, 1/L5/659:663 | Multiple bulged bases Not in a motif group | geometric IL_1R3E_002 IL_59677.2 | |
| IL_7ZJW_033 | 1/L5/492:494, 1/L5/655:656 | Single bulged U Not in a motif group | geometric IL_3WBM_001 IL_83039.13 | |
| IL_7ZJW_034 | 1/L5/498:500, 1/L5/650:651 | No text annotation Not in a motif group | ||
| IL_7ZJW_035 | 1/L5/501:506, 1/L5/648:649 | Multiple bulged bases Not in a motif group | geometric IL_1R3E_001 IL_16396.2 | |
| IL_7ZJW_036 | 1/L5/510:512, 1/L5/643:644 | Single bulged A Not in a motif group | geometric IL_6WPI_001 IL_37497.2 | |
| IL_7ZJW_037 | 1/L5/514:517, 1/L5/640:641 | Multiple bulged bases Not in a motif group | geometric IL_4YAZ_008 IL_76389.1 | |
| IL_7ZJW_038 | 1/L5/521:523, 1/L5/632:636 | Isolated near basepair Not in a motif group | geometric IL_3NJ7_004 IL_52767.2 | |
| IL_7ZJW_039 | 1/L5/703:704, 1/L5/1230:1232 | Single bulged G Not in a motif group | geometric IL_4LFB_036 IL_00225.2 | |
| IL_7ZJW_040 | 1/L5/717:718, 1/L5/842:845 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
| IL_7ZJW_041 | 1/L5/721:725, 1/L5/838:839 | No text annotation Not in a motif group | ||
| IL_7ZJW_042 | 1/L5/726:729, 1/L5/827:837 | No text annotation Not in a motif group | ||
| IL_7ZJW_043 | 1/L5/731:735, 1/L5/821:825 | No text annotation Not in a motif group | ||
| IL_7ZJW_044 | 1/L5/740:747, 1/L5/808:816 | No text annotation Not in a motif group | ||
| IL_7ZJW_045 | 1/L5/756:765, 1/L5/786:799 | No text annotation Not in a motif group | ||
| IL_7ZJW_046 | 1/L5/988:989, 1/L5/1123:1125 | Single bulged A Not in a motif group | geometric IL_2VPL_002 IL_37497.2 | |
| IL_7ZJW_047 | 1/L5/992:995, 1/L5/1110:1120 | No text annotation Not in a motif group | ||
| IL_7ZJW_048 | 1/L5/997:999, 1/L5/1104:1108 | Isolated cWS basepair Not in a motif group | geometric IL_4TS2_003 IL_52767.2 | |
| IL_7ZJW_049 | 1/L5/1001:1002, 1/L5/1100:1102 | Single bulged C Not in a motif group | geometric IL_3W3S_001 IL_61258.12 | |
| IL_7ZJW_050 | 1/L5/1005:1010, 1/L5/1092:1097 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
| IL_7ZJW_051 | 1/L5/1011:1012, 1/L5/1089:1091 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 | |
| IL_7ZJW_053 | 1/L5/1061:1064, 1/L5/1079:1083 | No text annotation Not in a motif group | ||
| IL_7ZJW_054 | 1/L5/1064:1066, 1/L5/1077:1079 | Isolated cWH basepair Not in a motif group | geometric IL_3W3S_003 IL_51629.2 | |
| IL_7ZJW_055 | 1/L5/1301:1304, 1/L5/1323:1326 | No text annotation Not in a motif group | ||
| IL_7ZJW_056 | 1/L5/1304:1305, 1/L5/1320:1323 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_003 IL_69996.1 | |
| IL_7ZJW_057 | 1/L5/1380:1384, 1/L5/1410:1415 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_7ZJW_058 | 1/L5/1386:1389, 1/L5/1405:1408 | Double sheared Not in a motif group | geometric IL_4LFB_060 IL_09705.9 | |
| IL_7ZJW_059 | 1/L5/1390:1392, 1/L5/1403:1404 | Single bulged C Not in a motif group | geometric IL_6ZDP_001 IL_61258.12 | |
| IL_7ZJW_060 | 1/L5/1422:1423, 1/L5/1451:1453 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.2 | |
| IL_7ZJW_061 | 1/L5/1429:1431, 1/L5/1444:1445 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_76488.2 | |
| IL_7ZJW_062 | 1/L5/1434:1435, 1/L5/1439:1441 | No text annotation Not in a motif group | ||
| IL_7ZJW_063 | 1/L5/1475:1481, 1/L5/1603:1612 | No text annotation Not in a motif group | ||
| IL_7ZJW_064 | 1/L5/1500:1501, 1/L5/1567:1569 | No text annotation Not in a motif group | homologous IL_8C3A_031 IL_37497.2 | |
| IL_7ZJW_065 | 1/L5/1505:1506, 1/L5/1531:1533 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
| IL_7ZJW_066 | 1/L5/1506:1510, 1/L5/1527:1531 | No text annotation Not in a motif group | homologous IL_8C3A_033 IL_56467.8 | |
| IL_7ZJW_067 | 1/L5/1541:1544, 1/L5/1560:1562 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_7ZJW_068 | 1/L5/1545:1547, 1/L5/1558:1559 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_7ZJW_069 | 1/L5/1579:1581, 1/L5/1591:1595 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_7ZJW_070 | 1/L5/1626:1628, 1/L5/1637:1639 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_7ZJW_071 | 1/L5/1641:1643, 1/L5/1787:1790 | No text annotation Not in a motif group | ||
| IL_7ZJW_072 | 1/L5/1649:1660, 1/L5/1780:1781 | No text annotation Not in a motif group | ||
| IL_7ZJW_073 | 1/L5/1662:1664, 1/L5/1777:1778 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_7ZJW_074 | 1/L5/1671:1677, 1/L5/1729:1736 | No text annotation Not in a motif group | ||
| IL_7ZJW_075 | 1/L5/1678:1684, 1/L5/1724:1728 | No text annotation Not in a motif group | geometric IL_4V9F_035 IL_21121.1 | |
| IL_7ZJW_076 | 1/L5/1685:1691, 1/L5/1717:1723 | No text annotation Not in a motif group | ||
| IL_7ZJW_077 | 1/L5/1692:1695, 1/L5/1715:1716 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_4LFB_025 IL_09061.6 | |
| IL_7ZJW_078 | 1/L5/1699:1702, 1/L5/1708:1711 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_003 IL_30621.2 | |
| IL_7ZJW_079 | 1/L5/1753:1755, 1/L5/1762:1763 | No text annotation Not in a motif group | homologous IL_8C3A_048 IL_00225.2 | |
| IL_7ZJW_080 | 1/L5/1797:1800, 1/L5/1812:1815 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1JID_002 IL_30621.2 | |
| IL_7ZJW_081 | 1/L5/1844:1848, 1/L5/2006:2010 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_7ZJW_082 | 1/L5/1850:1857, 1/L5/2003:2004 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.7 | |
| IL_7ZJW_083 | 1/L5/1857:1859, 1/L5/2002:2003 | No text annotation Not in a motif group | ||
| IL_7ZJW_084 | 1/L5/1859:1861, 1/L5/2001:2002 | No text annotation Not in a motif group | ||
| IL_7ZJW_085 | 1/L5/1865:1872, 1/L5/1992:1997 | No text annotation Not in a motif group | homologous IL_8C3A_054 IL_27086.1 | |
| IL_7ZJW_086 | 1/L5/1872:1883, 1/L5/1977:1992 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_7ZJW_087 | 1/L5/1885:1887, 1/L5/1974:1975 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.13 | |
| IL_7ZJW_088 | 1/L5/1896:1904, 1/L5/1961:1965 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.4 | |
| IL_7ZJW_089 | 1/L5/1912:1916, 1/L5/1928:1932 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_7ZJW_090 | 1/L5/2022:2024, 1/L5/2115:2116 | Single bulged U Not in a motif group | geometric IL_6CZR_156 IL_83039.13 | |
| IL_7ZJW_091 | 1/L5/2133:2135, 1/L5/2185:2188 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_7ZJW_092 | 1/L5/2142:2144, 1/L5/2177:2178 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_7ZJW_093 | 1/L5/2145:2152, 1/L5/2172:2176 | No text annotation Not in a motif group | homologous IL_8C3A_063 IL_70923.2 | |
| IL_7ZJW_094 | 1/L5/2155:2157, 1/L5/2168:2169 | Single bulged A Not in a motif group | geometric IL_5WWT_001 IL_37497.2 | |
| IL_7ZJW_095 | 1/L5/2249:2252, 1/L5/2626:2627 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V9F_050 IL_50694.2 | |
| IL_7ZJW_096 | 1/L5/2257:2262, 1/L5/2270:2273 | No text annotation Not in a motif group | homologous IL_8C3A_066 IL_93630.2 | |
| IL_7ZJW_097 | 1/L5/2289:2293, 1/L5/2352:2357 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_7ZJW_098 | 1/L5/2320:2322, 1/L5/2342:2343 | Single stack bend Not in a motif group | geometric IL_7RQB_058 IL_76488.2 | |
| IL_7ZJW_099 | 1/L5/2385:2390, 1/L5/2615:2617 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_009 IL_82068.2 | |
| IL_7ZJW_100 | 1/L5/2392:2393, 1/L5/2611:2613 | Single bulged U Not in a motif group | geometric IL_2R8S_004 IL_83039.13 | |
| IL_7ZJW_101 | 1/L5/2432:2436, 1/L5/2595:2599 | No text annotation Not in a motif group | homologous IL_8C3A_073 IL_56467.8 | |
| IL_7ZJW_102 | 1/L5/2456:2457, 1/L5/2567:2569 | No text annotation Not in a motif group | homologous IL_8C3A_075 IL_61258.12 | |
| IL_7ZJW_103 | 1/L5/2457:2458, 1/L5/2565:2567 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_7ZJW_104 | 1/L5/2489:2491, 1/L5/2528:2531 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_076 IL_38958.7 | |
| IL_7ZJW_105 | 1/L5/2494:2496, 1/L5/2524:2525 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_00225.2 | |
| IL_7ZJW_106 | 1/L5/2499:2505, 1/L5/2515:2521 | No text annotation Not in a motif group | homologous IL_8C3A_079 IL_60192.2 | |
| IL_7ZJW_107 | 1/L5/2547:2548, 1/L5/2553:2555 | No text annotation Not in a motif group | ||
| IL_7ZJW_108 | 1/L5/2674:2681, 1/L5/3582:3586 | No text annotation Not in a motif group | ||
| IL_7ZJW_109 | 1/L5/2686:2689, 1/L5/3574:3577 | No text annotation Not in a motif group | ||
| IL_7ZJW_110 | 1/L5/2689:2693, 1/L5/3572:3574 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_7ZJW_111 | 1/L5/2693:2698, 1/L5/3569:3572 | No text annotation Not in a motif group | homologous IL_8C3A_083 IL_82842.2 | |
| IL_7ZJW_112 | 1/L5/2710:2715, 1/L5/2720:2726 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_7ZJW_113 | 1/L5/2732:2734, 1/L5/3342:3344 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_7ZJW_114 | 1/L5/2739:2740, 1/L5/3334:3337 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_7ZJW_115 | 1/L5/3358:3360, 1/L5/3565:3567 | No text annotation Not in a motif group | geometric IL_5C5W_002 IL_95997.1 | |
| IL_7ZJW_116 | 1/L5/3362:3364, 1/L5/3561:3563 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_7ZJW_117 | 1/L5/3364:3365, 1/L5/3559:3561 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_7ZJW_118 | 1/L5/3392:3397, 1/L5/3409:3416 | No text annotation Not in a motif group | homologous IL_8C3A_088 IL_64509.1 | |
| IL_7ZJW_119 | 1/L5/3426:3428, 1/L5/3551:3553 | Stack and bulge Not in a motif group | geometric IL_2ET8_001 IL_82842.2 | |
| IL_7ZJW_120 | 1/L5/3432:3435, 1/L5/3481:3482 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_7ZJW_121 | 1/L5/3436:3437, 1/L5/3477:3480 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_7ZJW_122 | 1/L5/3437:3439, 1/L5/3475:3477 | No text annotation Not in a motif group | geometric IL_2ZNI_001 IL_51629.2 | |
| IL_7ZJW_123 | 1/L5/3440:3442, 1/L5/3473:3474 | No text annotation Not in a motif group | homologous IL_8C3A_091 IL_76488.2 | |
| IL_7ZJW_124 | 1/L5/3442:3446, 1/L5/3471:3473 | No text annotation Not in a motif group | ||
| IL_7ZJW_125 | 1/L5/3446:3453, 1/L5/3464:3471 | No text annotation Not in a motif group | ||
| IL_7ZJW_126 | 1/L5/3485:3487, 1/L5/3501:3503 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_7ZJW_127 | 1/L5/3487:3489, 1/L5/3499:3501 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_7ZJW_128 | 1/L5/3512:3513, 1/L5/3543:3546 | No text annotation Not in a motif group | homologous IL_8C3A_094 IL_59677.2 | |
| IL_7ZJW_129 | 1/L5/3513:3525, 1/L5/3539:3543 | No text annotation Not in a motif group | homologous IL_8C3A_095 IL_81589.2 | |
| IL_7ZJW_130 | 1/L5/3602:3604, 1/L5/3615:3617 | Stack and bulge Not in a motif group | geometric IL_2ET8_001 IL_82842.2 | |
| IL_7ZJW_131 | 1/L5/3627:3630, 1/L5/4309:4311 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.2 | |
| IL_7ZJW_132 | 1/L5/3630:3632, 1/L5/4307:4309 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_7ZJW_133 | 1/L5/3632:3634, 1/L5/4304:4307 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_7ZJW_134 | 1/L5/3645:3647, 1/L5/4134:4135 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.13 | |
| IL_7ZJW_135 | 1/L5/3648:3649, 1/L5/4130:4133 | No text annotation Not in a motif group | homologous IL_8C3A_099 IL_42622.2 | |
| IL_7ZJW_136 | 1/L5/3656:3658, 1/L5/3931:3933 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_7ZJW_137 | 1/L5/3659:3661, 1/L5/3927:3930 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_7ZJW_138 | 1/L5/3673:3678, 1/L5/3794:3800 | No text annotation Not in a motif group | ||
| IL_7ZJW_139 | 1/L5/3678:3681, 1/L5/3791:3794 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.2 | |
| IL_7ZJW_140 | 1/L5/3687:3699, 1/L5/3782:3785 | No text annotation Not in a motif group | ||
| IL_7ZJW_141 | 1/L5/3810:3816, 1/L5/3907:3910 | No text annotation Not in a motif group | homologous IL_8C3A_106 IL_74114.1 | |
| IL_7ZJW_142 | 1/L5/3818:3820, 1/L5/3904:3905 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_7ZJW_143 | 1/L5/3861:3863, 1/L5/3895:3897 | Isolated cWH basepair Not in a motif group | geometric IL_3R1D_002 IL_51629.2 | |
| IL_7ZJW_144 | 1/L5/3865:3873, 1/L5/3885:3893 | No text annotation Not in a motif group | ||
| IL_7ZJW_145 | 1/L5/3873:3875, 1/L5/3882:3885 | No text annotation Not in a motif group | geometric IL_4WSM_372 IL_33061.1 | |
| IL_7ZJW_146 | 1/L5/3937:3938, 1/L5/3948:3950 | No text annotation Not in a motif group | homologous IL_8C3A_107 IL_69996.1 | |
| IL_7ZJW_147 | 1/L5/3989:3991, 1/L5/4009:4013 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5TBW_099 IL_38958.7 | |
| IL_7ZJW_148 | 1/L5/4037:4040, 1/L5/4062:4064 | Decoding loop related Not in a motif group | geometric IL_2O3X_003 IL_82842.2 | |
| IL_7ZJW_149 | 1/L5/4041:4046, 1/L5/4056:4061 | No text annotation Not in a motif group | ||
| IL_7ZJW_150 | 1/L5/4093:4096, 1/L5/4110:4111 | Single stack bend Not in a motif group | geometric IL_7RQB_058 IL_76488.2 | |
| IL_7ZJW_151 | 1/L5/4146:4151, 1/L5/4185:4190 | No text annotation Not in a motif group | ||
| IL_7ZJW_152 | 1/L5/4151:4153, 1/L5/4181:4185 | No text annotation Not in a motif group | homologous IL_8C3A_113 IL_92788.2 | |
| IL_7ZJW_153 | 1/L5/4156:4158, 1/L5/4176:4178 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_7ZJW_154 | 1/L5/4158:4162, 1/L5/4172:4176 | Triple sheared Not in a motif group | geometric IL_7A0S_087 IL_56467.8 | |
| IL_7ZJW_155 | 1/L5/4199:4200, 1/L5/4272:4274 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_7ZJW_156 | 1/L5/4201:4204, 1/L5/4266:4271 | No text annotation Not in a motif group | ||
| IL_7ZJW_157 | 1/L5/4204:4205, 1/L5/4263:4266 | No text annotation Not in a motif group | homologous IL_8C3A_117 IL_71530.2 | |
| IL_7ZJW_158 | 1/L5/4212:4214, 1/L5/4235:4237 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_7ZJW_159 | 1/L5/4214:4216, 1/L5/4231:4235 | No text annotation Not in a motif group | ||
| IL_7ZJW_160 | 1/L5/4216:4218, 1/L5/4229:4231 | Isolated cWH basepair Not in a motif group | geometric IL_2W2H_002 IL_19557.3 | |
| IL_7ZJW_161 | 1/L5/4239:4241, 1/L5/4251:4253 | No text annotation Not in a motif group | geometric IL_4V88_444 IL_95997.1 | |
| IL_7ZJW_162 | 1/L5/4241:4243, 1/L5/4249:4251 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_7ZJW_163 | 1/L5/4281:4283, 1/L5/4295:4297 | No text annotation Not in a motif group | homologous IL_8C3A_121 IL_95997.1 | |
| IL_7ZJW_164 | 1/L5/4283:4284, 1/L5/4293:4295 | Single bulged A Not in a motif group | geometric IL_7RQB_101 IL_37497.2 | |
| IL_7ZJW_165 | 1/L5/4321:4323, 1/L5/4472:4474 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_7ZJW_166 | 1/L5/4324:4326, 1/L5/4469:4471 | Stack and bulge Not in a motif group | geometric IL_2ET8_001 IL_82842.2 | |
| IL_7ZJW_167 | 1/L5/4326:4328, 1/L5/4467:4469 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_51629.2 | |
| IL_7ZJW_168 | 1/L5/4328:4331, 1/L5/4463:4467 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.9 | |
| IL_7ZJW_169 | 1/L5/4342:4349, 1/L5/4354:4360 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_7ZJW_170 | 1/L5/4368:4375, 1/L5/4415:4421 | No text annotation Not in a motif group | ||
| IL_7ZJW_171 | 1/L5/4378:4384, 1/L5/4407:4412 | Triple sheared related Not in a motif group | geometric IL_5J7L_063 IL_64879.2 | |
| IL_7ZJW_172 | 1/L5/4384:4386, 1/L5/4405:4407 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_012 IL_51629.2 | |
| IL_7ZJW_173 | 1/L5/4387:4388, 1/L5/4401:4404 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.2 | |
| IL_7ZJW_174 | 1/L5/4426:4431, 1/L5/4451:4456 | UAA/GAN with extra cWW Not in a motif group | geometric IL_5J7L_350 IL_49767.5 | |
| IL_7ZJW_175 | 1/L5/4486:4489, 1/L5/4697:4698 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
| IL_7ZJW_176 | 1/L5/4490:4493, 1/L5/4693:4696 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.2 | |
| IL_7ZJW_177 | 1/L5/4496:4498, 1/L5/4687:4690 | No text annotation Not in a motif group | ||
| IL_7ZJW_178 | 1/L5/4503:4513, 1/L5/4607:4616 | No text annotation Not in a motif group | ||
| IL_7ZJW_179 | 1/L5/4516:4519, 1/L5/4602:4604 | Major groove platform with extra cWW Not in a motif group | geometric IL_3PDR_004 IL_18471.2 | |
| IL_7ZJW_180 | 1/L5/4624:4627, 1/L5/4670:4673 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_003 IL_30621.2 | |
| IL_7ZJW_181 | 1/L5/4630:4635, 1/L5/4663:4667 | No text annotation Not in a motif group | ||
| IL_7ZJW_182 | 1/L5/4638:4640, 1/L5/4659:4660 | Single bulged C Not in a motif group | geometric IL_5TBW_002 IL_61258.12 | |
| IL_7ZJW_183 | 1/L5/4643:4645, 1/L5/4655:4656 | Single stack bend Not in a motif group | geometric IL_7RQB_005 IL_76488.2 | |
| IL_7ZJW_184 | 1/L5/4731:4733, 1/L5/4796:4798 | No text annotation Not in a motif group | geometric IL_3IVK_002 IL_95997.1 | |
| IL_7ZJW_185 | 1/L5/4735:4736, 1/L5/4792:4794 | Single bulged C Not in a motif group | geometric IL_1KUQ_002 IL_61258.12 | |
| IL_7ZJW_186 | 1/L5/4739:4741, 1/L5/4784:4789 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_7ZJW_187 | 1/L5/4742:4748, 1/L5/4778:4783 | No text annotation Not in a motif group | ||
| IL_7ZJW_188 | 1/L5/4748:4750, 1/L5/4776:4778 | Stack and bulge Not in a motif group | geometric IL_2ET8_001 IL_82842.2 | |
| IL_7ZJW_189 | 1/L5/4751:4753, 1/L5/4774:4775 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_7ZJW_190 | 1/L5/4753:4756, 1/L5/4771:4774 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_7ZJW_191 | 1/L7/15:16, 1/L7/62:64 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_7ZJW_192 | 1/L7/21:27, 1/L7/52:57 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_7ZJW_193 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_7ZJW_194 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_7ZJW_195 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_7ZJW_196 | 1/L7/79:81, 1/L7/95:97 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_95997.1 | |
| IL_7ZJW_197 | 1/L7/82:85, 1/L7/92:94 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_7ZJW_198 | 1/L8/64:67, 1/L8/91:95 | No text annotation Not in a motif group | ||
| IL_7ZJW_199 | 1/S/1117:1119, 1/S/1149:1151 | No text annotation Not in a motif group | ||
| IL_7ZJW_200 | 1/S/1119:1130, 1/S/1141:1149 | No text annotation Not in a motif group | ||
| IL_7ZJW_201 | 1/S2/22:26, 1/S2/649:653 | No text annotation Not in a motif group | ||
| IL_7ZJW_202 | 1/S2/26:28, 1/S2/647:649 | UU cWW Not in a motif group | geometric IL_3SZX_003 IL_95997.1 | |
| IL_7ZJW_203 | 1/S2/37:40, 1/S2/515:519 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.9 | |
| IL_7ZJW_204 | 1/S2/41:47, 1/S2/480:482 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_7ZJW_205 | 1/S2/49:51, 1/S2/477:478 | Minor groove platform Not in a motif group | geometric IL_4LFB_004 IL_93353.1 | |
| IL_7ZJW_206 | 1/S2/57:62, 1/S2/86:88 | No text annotation Not in a motif group | geometric IL_4V88_389 IL_95004.1 | |
| IL_7ZJW_207 | 1/S2/63:68, 1/S2/81:85 | No text annotation Not in a motif group | geometric IL_4V88_390 IL_77691.1 | |
| IL_7ZJW_208 | 1/S2/106:108, 1/S2/354:356 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_405 IL_51629.2 | |
| IL_7ZJW_209 | 1/S2/108:110, 1/S2/352:354 | Stack and bulge Not in a motif group | geometric IL_2O3X_001 IL_82842.2 | |
| IL_7ZJW_210 | 1/S2/110:112, 1/S2/350:352 | No text annotation Not in a motif group | geometric IL_4KR9_001 IL_51629.2 | |
| IL_7ZJW_211 | 1/S2/112:115, 1/S2/349:350 | Multiple bulged bases Not in a motif group | geometric IL_5WLH_001 IL_44546.1 | |
| IL_7ZJW_212 | 1/S2/115:122, 1/S2/343:349 | No text annotation Not in a motif group | ||
| IL_7ZJW_213 | 1/S2/123:124, 1/S2/340:342 | Minor groove platform Not in a motif group | geometric IL_4UYK_001 IL_93353.1 | |
| IL_7ZJW_215 | 1/S2/144:151, 1/S2/167:175 | No text annotation Not in a motif group | ||
| IL_7ZJW_216 | 1/S2/151:154, 1/S2/164:167 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1L9A_002 IL_30621.2 | |
| IL_7ZJW_217 | 1/S2/216:219, 1/S2/303:310 | No text annotation Not in a motif group | ||
| IL_7ZJW_218 | 1/S2/313:315, 1/S2/337:338 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_37497.2 | |
| IL_7ZJW_219 | 1/S2/318:320, 1/S2/333:334 | Single stack bend Not in a motif group | geometric IL_5TBW_009 IL_76488.2 | |
| IL_7ZJW_220 | 1/S2/360:365, 1/S2/397:404 | Kink-turn with non-sequential stacking Not in a motif group | geometric IL_4V88_402 IL_45067.2 | |
| IL_7ZJW_221 | 1/S2/367:372, 1/S2/394:395 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_7ZJW_222 | 1/S2/412:414, 1/S2/425:430 | No text annotation Not in a motif group | geometric IL_4V88_404 IL_11347.1 | |
| IL_7ZJW_223 | 1/S2/438:440, 1/S2/455:457 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_405 IL_51629.2 | |
| IL_7ZJW_224 | 1/S2/491:497, 1/S2/507:511 | No text annotation Not in a motif group | geometric IL_4LFB_048 IL_85222.1 | |
| IL_7ZJW_225 | 1/S2/530:531, 1/S2/555:557 | Single bulged A Not in a motif group | geometric IL_6WPI_001 IL_37497.2 | |
| IL_7ZJW_226 | 1/S2/536:538, 1/S2/547:550 | No text annotation Not in a motif group | ||
| IL_7ZJW_227 | 1/S2/564:566, 1/S2/586:593 | No text annotation Not in a motif group | ||
| IL_7ZJW_228 | 1/S2/566:570, 1/S2/582:586 | No text annotation Not in a motif group | ||
| IL_7ZJW_229 | 1/S2/600:607, 1/S2/637:638 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_7ZJW_230 | 1/S2/607:609, 1/S2/636:637 | Single bulged U Not in a motif group | geometric IL_4V88_414 IL_83039.13 | |
| IL_7ZJW_231 | 1/S2/609:611, 1/S2/634:636 | Not an internal loop Not in a motif group | geometric IL_5VCI_005 IL_82842.2 | |
| IL_7ZJW_232 | 1/S2/612:618, 1/S2/625:633 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_7ZJW_233 | 1/S2/664:666, 1/S2/1163:1165 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_7ZJW_234 | 1/S2/666:672, 1/S2/1162:1163 | No text annotation Not in a motif group | geometric IL_4LFB_022 IL_69996.1 | |
| IL_7ZJW_235 | 1/S2/674:676, 1/S2/1031:1033 | No text annotation Not in a motif group | geometric IL_4V88_417 IL_95997.1 | |
| IL_7ZJW_236 | 1/S2/677:681, 1/S2/1026:1030 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_418 IL_17136.1 | |
| IL_7ZJW_237 | 1/S2/681:683, 1/S2/1024:1026 | Stack and bulge Not in a motif group | geometric IL_2O3X_001 IL_82842.2 | |
| IL_7ZJW_238 | 1/S2/746:750, 1/S2/795:797 | No text annotation Not in a motif group | ||
| IL_7ZJW_239 | 1/S2/752:755, 1/S2/791:793 | No text annotation Not in a motif group | ||
| IL_7ZJW_240 | 1/S2/756:757, 1/S2/788:790 | Single stack bend Not in a motif group | geometric IL_7RQB_024 IL_92001.1 | |
| IL_7ZJW_241 | 1/S2/801:804, 1/S2/861:866 | No text annotation Not in a motif group | ||
| IL_7ZJW_242 | 1/S2/806:808, 1/S2/857:859 | No text annotation Not in a motif group | geometric IL_5TBW_115 IL_95997.1 | |
| IL_7ZJW_243 | 1/S2/808:817, 1/S2/849:857 | No text annotation Not in a motif group | ||
| IL_7ZJW_244 | 1/S2/834:835, 1/S2/839:842 | No text annotation Not in a motif group | ||
| IL_7ZJW_245 | 1/S2/875:877, 1/S2/911:913 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_7ZJW_246 | 1/S2/878:880, 1/S2/908:910 | No text annotation Not in a motif group | geometric IL_4LFB_006 IL_95997.1 | |
| IL_7ZJW_247 | 1/S2/923:924, 1/S2/1020:1023 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.2 | |
| IL_7ZJW_248 | 1/S2/925:928, 1/S2/1015:1019 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_429 IL_30621.2 | |
| IL_7ZJW_249 | 1/S2/929:932, 1/S2/1011:1014 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_7ZJW_250 | 1/S2/932:936, 1/S2/1008:1011 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_7ZJW_251 | 1/S2/943:946, 1/S2/982:985 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_432 IL_30621.2 | |
| IL_7ZJW_252 | 1/S2/953:957, 1/S2/968:975 | Kink-turn Not in a motif group | geometric IL_4V88_434 IL_45067.2 | |
| IL_7ZJW_253 | 1/S2/1043:1048, 1/S2/1072:1074 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_7ZJW_254 | 1/S2/1048:1052, 1/S2/1068:1072 | tSH-tHW-tHS Not in a motif group | geometric IL_5J7L_037 IL_17136.1 | |
| IL_7ZJW_255 | 1/S2/1092:1094, 1/S2/1153:1159 | No text annotation Not in a motif group | geometric IL_4V88_437 IL_19557.3 | |
| IL_7ZJW_256 | 1/S2/1099:1102, 1/S2/1132:1135 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.2 | |
| IL_7ZJW_257 | 1/S2/1102:1104, 1/S2/1130:1132 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_7ZJW_258 | 1/S2/1109:1111, 1/S2/1124:1125 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_7ZJW_259 | 1/S2/1169:1176, 1/S2/1187:1192 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | geometric IL_4V88_440 IL_24606.2 | |
| IL_7ZJW_260 | 1/S2/1177:1179, 1/S2/1184:1186 | Stack and bulge Not in a motif group | geometric IL_2O3X_001 IL_82842.2 | |
| IL_7ZJW_261 | 1/S2/1204:1205, 1/S2/1695:1697 | Single bulged A Not in a motif group | geometric IL_4LFB_035 IL_37497.2 | |
| IL_7ZJW_262 | 1/S2/1206:1209, 1/S2/1692:1694 | Intercalated cWW Not in a motif group | geometric IL_7A0S_044 IL_82842.2 | |
| IL_7ZJW_263 | 1/S2/1215:1218, 1/S2/1682:1686 | C-loop Not in a motif group | geometric IL_4V88_443 IL_63596.6 | |
| IL_7ZJW_264 | 1/S2/1223:1225, 1/S2/1643:1645 | No text annotation Not in a motif group | geometric IL_5UNE_004 IL_95997.1 | |
| IL_7ZJW_265 | 1/S2/1231:1234, 1/S2/1526:1529 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.2 | |
| IL_7ZJW_266 | 1/S2/1236:1237, 1/S2/1522:1524 | Minor groove platform Not in a motif group | geometric IL_4V88_445 IL_42622.2 | |
| IL_7ZJW_267 | 1/S2/1271:1273, 1/S2/1511:1513 | No text annotation Not in a motif group | geometric IL_5MWI_003 IL_95997.1 | |
| IL_7ZJW_268 | 1/S2/1281:1288, 1/S2/1315:1318 | No text annotation Not in a motif group | ||
| IL_7ZJW_269 | 1/S2/1288:1292, 1/S2/1309:1315 | No text annotation Not in a motif group | ||
| IL_7ZJW_270 | 1/S2/1292:1294, 1/S2/1307:1309 | No text annotation Not in a motif group | geometric IL_4V88_448 IL_10023.1 | |
| IL_7ZJW_271 | 1/S2/1328:1330, 1/S2/1501:1503 | No text annotation Not in a motif group | geometric IL_4V9F_105 IL_95997.1 | |
| IL_7ZJW_272 | 1/S2/1330:1334, 1/S2/1499:1501 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_7ZJW_273 | 1/S2/1334:1336, 1/S2/1493:1499 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_451 IL_92788.2 | |
| IL_7ZJW_274 | 1/S2/1337:1339, 1/S2/1489:1492 | No text annotation Not in a motif group | ||
| IL_7ZJW_275 | 1/S2/1346:1350, 1/S2/1381:1385 | No text annotation Not in a motif group | ||
| IL_7ZJW_276 | 1/S2/1364:1366, 1/S2/1375:1376 | Minor groove platform Not in a motif group | geometric IL_4V88_454 IL_93353.1 | |
| IL_7ZJW_277 | 1/S2/1396:1401, 1/S2/1447:1451 | Other IL Not in a motif group | geometric IL_4WF9_084 IL_05145.2 | |
| IL_7ZJW_278 | 1/S2/1401:1403, 1/S2/1445:1447 | No text annotation Not in a motif group | geometric IL_6CZR_118 IL_95997.1 | |
| IL_7ZJW_279 | 1/S2/1403:1406, 1/S2/1442:1445 | Minor groove platform Not in a motif group | geometric IL_4V88_456 IL_76458.1 | |
| IL_7ZJW_280 | 1/S2/1409:1410, 1/S2/1433:1439 | Multiple bulged bases Not in a motif group | geometric IL_1R3E_002 IL_59677.2 | |
| IL_7ZJW_281 | 1/S2/1413:1414, 1/S2/1428:1430 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_7ZJW_282 | 1/S2/1417:1418, 1/S2/1423:1425 | No text annotation Not in a motif group | ||
| IL_7ZJW_283 | 1/S2/1538:1540, 1/S2/1595:1597 | No text annotation Not in a motif group | geometric IL_4KYY_001 IL_95997.1 | |
| IL_7ZJW_284 | 1/S2/1551:1559, 1/S2/1578:1583 | No text annotation Not in a motif group | geometric IL_4LFB_052 IL_84205.1 | |
| IL_7ZJW_285 | 1/S2/1561:1563, 1/S2/1574:1576 | No text annotation Not in a motif group | geometric IL_5TBW_016 IL_51629.2 | |
| IL_7ZJW_286 | 1/S2/1605:1611, 1/S2/1630:1636 | No text annotation Not in a motif group | homologous IL_8C3A_469 IL_10092.1 | |
| IL_7ZJW_287 | 1/S2/1701:1703, 1/S2/1834:1837 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_7ZJW_288 | 1/S2/1703:1706, 1/S2/1830:1834 | No text annotation Not in a motif group | ||
| IL_7ZJW_289 | 1/S2/1707:1709, 1/S2/1827:1829 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_7ZJW_290 | 1/S2/1709:1712, 1/S2/1823:1827 | No text annotation Not in a motif group | ||
| IL_7ZJW_291 | 1/S2/1715:1717, 1/S2/1818:1820 | No text annotation Not in a motif group | geometric IL_4J50_002 IL_95997.1 | |
| IL_7ZJW_292 | 1/S2/1718:1721, 1/S2/1814:1817 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_7ZJW_293 | 1/S2/1721:1723, 1/S2/1813:1814 | Single bulged U Not in a motif group | geometric IL_4V88_469 IL_83039.13 | |
| IL_7ZJW_294 | 1/S2/1730:1732, 1/S2/1804:1806 | No text annotation Not in a motif group | geometric IL_5TBW_016 IL_51629.2 | |
| IL_7ZJW_295 | 1/S2/1734:1737, 1/S2/1799:1802 | Double sheared Not in a motif group | geometric IL_4V88_471 IL_09705.9 | |
| IL_7ZJW_296 | 1/S2/1740:1742, 1/S2/1794:1796 | No text annotation Not in a motif group | geometric IL_5TBW_016 IL_51629.2 | |
| IL_7ZJW_297 | 1/S2/1743:1750, 1/S2/1786:1793 | No text annotation Not in a motif group | ||
| IL_7ZJW_298 | 1/S2/1750:1752, 1/S2/1783:1786 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 | |
| IL_7ZJW_299 | 1/S2/1752:1753, 1/S2/1781:1783 | Single stack bend Not in a motif group | geometric IL_5J7L_032 IL_76488.2 | |
| IL_7ZJW_300 | 1/S2/1842:1844, 1/S2/1857:1859 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7ZJW_020 | Minor groove platform | ||
| IL_7ZJW_052 | No text annotation | ||
| IL_7ZJW_214 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7ZJW_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation Not in a motif group | ||
| J3_7ZJW_002 | 1/L5/380:387, 1/L5/414:415, 1/L8/19:20 | No text annotation Not in a motif group | ||
| J3_7ZJW_003 | 1/L5/1486:1492, 1/L5/1577:1579, 1/L5/1595:1598 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_7ZJW_004 | 1/L5/1501:1503, 1/L5/1535:1539, 1/L5/1564:1567 | No text annotation Not in a motif group | homologous J3_8C3A_004 NA | |
| J3_7ZJW_005 | 1/L5/1908:1910, 1/L5/1934:1944, 1/L5/1953:1957 | No text annotation Not in a motif group | ||
| J3_7ZJW_006 | 1/L5/2236:2242, 1/L5/2648:2650, 1/L5/2662:2665 | No text annotation Not in a motif group | homologous J3_8C3A_006 NA | |
| J3_7ZJW_007 | 1/L5/2245:2248, 1/L5/2628:2634, 1/L5/2643:2645 | No text annotation Not in a motif group | homologous J3_8C3A_007 NA | |
| J3_7ZJW_008 | 1/L5/2283:2288, 1/L5/2358:2362, 1/L5/2379:2380 | No text annotation Not in a motif group | ||
| J3_7ZJW_009 | 1/L5/2394:2398, 1/L5/2415:2418, 1/L5/2600:2610 | No text annotation Not in a motif group | ||
| J3_7ZJW_010 | 1/L5/2418:2419, 1/L5/2428:2432, 1/L5/2599:2600 | No text annotation Not in a motif group | ||
| J3_7ZJW_011 | 1/L5/3669:3671, 1/L5/3802:3806, 1/L5/3914:3919 | No text annotation Not in a motif group | ||
| J3_7ZJW_012 | 1/L5/3987:3989, 1/L5/4013:4015, 1/L5/4024:4029 | No text annotation Not in a motif group | homologous J3_8C3A_010 NA | |
| J3_7ZJW_013 | 1/L5/4209:4212, 1/L5/4237:4239, 1/L5/4253:4259 | No text annotation Not in a motif group | homologous J3_8C3A_011 NA | |
| J3_7ZJW_014 | 1/L5/4709:4714, 1/L5/4722:4730, 1/L5/4799:4802 | No text annotation Not in a motif group | ||
| J3_7ZJW_015 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_7ZJW_016 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation Not in a motif group | ||
| J3_7ZJW_017 | 1/S2/40:41, 1/S2/482:490, 1/S2/512:515 | No text annotation Not in a motif group | ||
| J3_7ZJW_018 | 1/S2/683:686, 1/S2/918:923, 1/S2/1023:1024 | No text annotation Not in a motif group | ||
| J3_7ZJW_019 | 1/S2/817:820, 1/S2/830:832, 1/S2/844:849 | No text annotation Not in a motif group | ||
| J3_7ZJW_020 | 1/S2/938:942, 1/S2/986:994, 1/S2/1001:1006 | No text annotation Not in a motif group | ||
| J3_7ZJW_021 | 1/S2/1095:1097, 1/S2/1137:1141, 1/S2/1148:1152 | No text annotation Not in a motif group | ||
| J3_7ZJW_022 | 1/S2/1219:1222, 1/S2/1646:1652, 1/S2/1674:1681 | No text annotation Not in a motif group | homologous J3_8C3A_038 NA | |
| J3_7ZJW_023 | 1/S2/1226:1229, 1/S2/1531:1533, 1/S2/1639:1642 | No text annotation Not in a motif group | homologous J3_8C3A_039 NA | |
| J3_7ZJW_024 | 1/S2/1238:1246, 1/S2/1255:1267, 1/S2/1517:1521 | No text annotation Not in a motif group | ||
| J3_7ZJW_025 | 1/S2/1273:1278, 1/S2/1321:1325, 1/S2/1505:1511 | No text annotation Not in a motif group | homologous J3_8C3A_041 NA | |
| J3_7ZJW_026 | 1/S2/1341:1346, 1/S2/1385:1390, 1/S2/1482:1487 | No text annotation Not in a motif group | ||
| J3_7ZJW_027 | 1/S2/1351:1352, 1/S2/1361:1364, 1/S2/1376:1380 | No text annotation Not in a motif group | ||
| J3_7ZJW_028 | 1/S2/1391:1396, 1/S2/1451:1457, 1/S2/1471:1481 | No text annotation Not in a motif group | ||
| J3_7ZJW_029 | 1/S2/1533:1537, 1/S2/1598:1605, 1/S2/1636:1639 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: