7OSM Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7OSM_001 | 1/18S/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_7OSM_003 | 1/18S/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_7OSM_005 | 1/18S/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_7OSM_006 | 1/18S/275:281 | No text annotation Not in a motif group | ||
| HL_7OSM_007 | 1/18S/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_7OSM_008 | 1/18S/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_7OSM_009 | 1/18S/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_7OSM_010 | 1/18S/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_7OSM_011 | 1/18S/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_7OSM_012 | 1/18S/486:501 | No text annotation Not in a motif group | ||
| HL_7OSM_013 | 1/18S/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_7OSM_014 | 1/18S/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_7OSM_016 | 1/18S/700:738 | No text annotation Not in a motif group | ||
| HL_7OSM_017 | 1/18S/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_7OSM_018 | 1/18S/777:783 | No text annotation Not in a motif group | ||
| HL_7OSM_020 | 1/18S/899:910 | No text annotation Not in a motif group | ||
| HL_7OSM_021 | 1/18S/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_7OSM_022 | 1/18S/997:1007 | No text annotation Not in a motif group | geometric HL_4LFB_017 HL_12326.1 | |
| HL_7OSM_023 | 1/18S/1054:1065 | No text annotation Not in a motif group | ||
| HL_7OSM_024 | 1/18S/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_7OSM_025 | 1/18S/1121:1126 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_7OSM_026 | 1/18S/1187:1198 | No text annotation Not in a motif group | geometric HL_6UFM_001 HL_09136.1 | |
| HL_7OSM_027 | 1/18S/1238:1247 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_7OSM_028 | 1/18S/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_7OSM_029 | 1/18S/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_7OSM_030 | 1/18S/1359:1364 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_7OSM_031 | 1/18S/1396:1402 | No text annotation Not in a motif group | geometric HL_3OXE_002 HL_42097.1 | |
| HL_7OSM_032 | 1/18S/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_7OSM_033 | 1/18S/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_7OSM_034 | 1/18S/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_7OSM_035 | 1/18S/1687:1714 | No text annotation Not in a motif group | ||
| HL_7OSM_036 | 1/18S/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 | |
| HL_7OSM_037 | 1/25S/38:45 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.2 | |
| HL_7OSM_038 | 1/25S/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
| HL_7OSM_039 | 1/25S/90:96 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_7OSM_040 | 1/25S/132:136 | No text annotation Not in a motif group | homologous HL_8C3A_004 HL_98426.1 | |
| HL_7OSM_041 | 1/25S/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_7OSM_042 | 1/25S/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_7OSM_043 | 1/25S/216:224 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_7OSM_044 | 1/25S/278:287 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_7OSM_045 | 1/25S/303:312 | No text annotation Not in a motif group | geometric HL_4QLM_002 HL_12078.2 | |
| HL_7OSM_046 | 1/25S/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.1 | |
| HL_7OSM_047 | 1/25S/382:387 | No text annotation Not in a motif group | homologous HL_8C3A_011 HL_42097.1 | |
| HL_7OSM_048 | 1/25S/543:548 | No text annotation Not in a motif group | homologous HL_5TBW_012 HL_86373.2 | |
| HL_7OSM_049 | 1/25S/598:605 | No text annotation Not in a motif group | geometric HL_7A0S_056 HL_84085.2 | |
| HL_7OSM_050 | 1/25S/640:649 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_014 HL_89380.2 | |
| HL_7OSM_051 | 1/25S/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_7OSM_052 | 1/25S/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_7OSM_053 | 1/25S/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_7OSM_054 | 1/25S/763:768 | No text annotation Not in a motif group | homologous HL_5TBW_018 HL_34168.2 | |
| HL_7OSM_055 | 1/25S/844:849 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.1 | |
| HL_7OSM_056 | 1/25S/876:885 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.6 | |
| HL_7OSM_057 | 1/25S/910:918 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_7OSM_058 | 1/25S/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_7OSM_060 | 1/25S/1076:1083 | No text annotation Not in a motif group | homologous HL_8C3A_024 HL_71554.2 | |
| HL_7OSM_061 | 1/25S/1126:1132 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_42097.1 | |
| HL_7OSM_062 | 1/25S/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_7OSM_063 | 1/25S/1239:1249 | No text annotation Not in a motif group | homologous HL_8C3A_027 HL_07145.1 | |
| HL_7OSM_064 | 1/25S/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_7OSM_065 | 1/25S/1347:1357 | No text annotation Not in a motif group | ||
| HL_7OSM_066 | 1/25S/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_7OSM_067 | 1/25S/1462:1470 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_89380.2 | |
| HL_7OSM_068 | 1/25S/1506:1512 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_7OSM_069 | 1/25S/1544:1549 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_76539.2 | |
| HL_7OSM_071 | 1/25S/1599:1608 | No text annotation Not in a motif group | homologous HL_8C3A_035 HL_69023.2 | |
| HL_7OSM_072 | 1/25S/1634:1639 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_42097.1 | |
| HL_7OSM_073 | 1/25S/1680:1688 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_60812.1 | |
| HL_7OSM_074 | 1/25S/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.2 | |
| HL_7OSM_075 | 1/25S/1760:1765 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_75407.1 | |
| HL_7OSM_076 | 1/25S/1792:1796 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_38927.2 | |
| HL_7OSM_077 | 1/25S/1844:1851 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.2 | |
| HL_7OSM_078 | 1/25S/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_7OSM_079 | 1/25S/1923:1928 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_7OSM_081 | 1/25S/2110:2114 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_7OSM_082 | 1/25S/2135:2145 | No text annotation Not in a motif group | homologous HL_8C3A_046 HL_43613.5 | |
| HL_7OSM_083 | 1/25S/2164:2170 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_7OSM_084 | 1/25S/2220:2225 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_42097.1 | |
| HL_7OSM_085 | 1/25S/2253:2263 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_7OSM_086 | 1/25S/2292:2300 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_51824.1 | |
| HL_7OSM_087 | 1/25S/2369:2378 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_7OSM_089 | 1/25S/2534:2545 | No text annotation Not in a motif group | ||
| HL_7OSM_090 | 1/25S/2568:2573 | No text annotation Not in a motif group | ||
| HL_7OSM_091 | 1/25S/2616:2624 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_7OSM_092 | 1/25S/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_7OSM_093 | 1/25S/2673:2681 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_7OSM_094 | 1/25S/2693:2700 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.2 | |
| HL_7OSM_095 | 1/25S/2724:2732 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_7OSM_096 | 1/25S/2744:2749 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.1 | |
| HL_7OSM_097 | 1/25S/2776:2784 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.1 | |
| HL_7OSM_098 | 1/25S/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_7OSM_099 | 1/25S/2897:2904 | No text annotation Not in a motif group | homologous HL_8C3A_063 HL_88526.2 | |
| HL_7OSM_100 | 1/25S/2920:2926 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_7OSM_101 | 1/25S/2963:2968 | No text annotation Not in a motif group | homologous HL_8C3A_065 HL_42097.1 | |
| HL_7OSM_102 | 1/25S/3025:3030 | No text annotation Not in a motif group | homologous HL_8C3A_066 HL_42097.1 | |
| HL_7OSM_103 | 1/25S/3068:3073 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_7OSM_104 | 1/25S/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_7OSM_105 | 1/25S/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
| HL_7OSM_106 | 1/25S/3240:3247 | No text annotation Not in a motif group | homologous HL_5TBW_069 HL_14449.2 | |
| HL_7OSM_107 | 1/25S/3303:3311 | No text annotation Not in a motif group | homologous HL_8C3A_071 HL_27930.1 | |
| HL_7OSM_108 | 1/25S/3350:3353 | No text annotation Not in a motif group | homologous HL_5TBW_071 HL_53837.1 | |
| HL_7OSM_109 | 1/58S/47:56 | No text annotation Not in a motif group | geometric HL_7A0S_001 HL_99167.1 | |
| HL_7OSM_110 | 1/58S/73:78 | Other HL Not in a motif group | geometric HL_5TBW_074 HL_50142.2 | |
| HL_7OSM_111 | 1/58S/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_7OSM_112 | 1/58S/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 | |
| HL_7OSM_113 | 1/AB/36:41 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_7OSM_114 | 1/AB/88:93 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_7OSM_115 | 1/ASIT/13:22 | No text annotation HL_47100.1 | ||
| HL_7OSM_116 | 1/ASIT/31:39 | No text annotation Not in a motif group | ||
| HL_7OSM_117 | 1/ASIT/53:62 | No text annotation HL_51824.1 | ||
| HL_7OSM_118 | 1/PSIT/13:23 | No text annotation Not in a motif group | homologous HL_1YFG_001 NA | |
| HL_7OSM_119 | 1/PSIT/32:40 | tRNA anticodon loop Not in a motif group | homologous HL_4TUE_034 HL_53597.2 | |
| HL_7OSM_120 | 1/PSIT/53:63 | No text annotation Not in a motif group | homologous HL_4V7M_040 HL_22031.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7OSM_002 | No text annotation | ||
| HL_7OSM_004 | No text annotation | ||
| HL_7OSM_015 | No text annotation | ||
| HL_7OSM_019 | No text annotation | ||
| HL_7OSM_059 | No text annotation | ||
| HL_7OSM_070 | No text annotation | ||
| HL_7OSM_080 | No text annotation | ||
| HL_7OSM_088 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7OSM_001 | 1/18S/24:26, 1/18S/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_7OSM_002 | 1/18S/35:37, 1/18S/471:473 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_7OSM_003 | 1/18S/37:41, 1/18S/466:471 | No text annotation Not in a motif group | homologous IL_4V88_386 IL_41507.1 | |
| IL_7OSM_004 | 1/18S/42:48, 1/18S/431:433 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_7OSM_005 | 1/18S/50:52, 1/18S/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_7OSM_006 | 1/18S/58:63, 1/18S/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_7OSM_007 | 1/18S/64:69, 1/18S/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_7OSM_008 | 1/18S/109:112, 1/18S/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_7OSM_009 | 1/18S/113:116, 1/18S/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_7OSM_010 | 1/18S/117:122, 1/18S/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_7OSM_011 | 1/18S/142:149, 1/18S/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_7OSM_012 | 1/18S/150:152, 1/18S/162:164 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_7OSM_013 | 1/18S/204:208, 1/18S/257:263 | No text annotation Not in a motif group | ||
| IL_7OSM_015 | 1/18S/265:267, 1/18S/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_7OSM_016 | 1/18S/270:273, 1/18S/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_7OSM_017 | 1/18S/311:316, 1/18S/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_7OSM_018 | 1/18S/318:323, 1/18S/345:346 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_7OSM_019 | 1/18S/363:365, 1/18S/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_7OSM_020 | 1/18S/389:391, 1/18S/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_7OSM_021 | 1/18S/411:413, 1/18S/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_7OSM_022 | 1/18S/439:441, 1/18S/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_7OSM_023 | 1/18S/443:447, 1/18S/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_7OSM_024 | 1/18S/447:448, 1/18S/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_7OSM_025 | 1/18S/481:484, 1/18S/503:507 | No text annotation Not in a motif group | ||
| IL_7OSM_026 | 1/18S/516:518, 1/18S/533:536 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_411 IL_46796.1 | |
| IL_7OSM_027 | 1/18S/518:520, 1/18S/532:533 | Minor groove platform Not in a motif group | homologous IL_4V88_412 IL_93353.1 | |
| IL_7OSM_028 | 1/18S/550:557, 1/18S/587:588 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_7OSM_029 | 1/18S/557:559, 1/18S/586:587 | Single bulged U Not in a motif group | homologous IL_4V88_414 IL_83039.13 | |
| IL_7OSM_030 | 1/18S/562:568, 1/18S/575:583 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_7OSM_031 | 1/18S/616:622, 1/18S/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_7OSM_032 | 1/18S/624:626, 1/18S/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_7OSM_033 | 1/18S/627:631, 1/18S/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_7OSM_034 | 1/18S/646:648, 1/18S/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_95997.1 | |
| IL_7OSM_035 | 1/18S/746:747, 1/18S/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_7OSM_036 | 1/18S/748:750, 1/18S/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_7OSM_037 | 1/18S/751:753, 1/18S/794:798 | Minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_006 IL_65006.1 | |
| IL_7OSM_038 | 1/18S/753:759, 1/18S/791:794 | No text annotation Not in a motif group | homologous IL_8C3A_433 IL_25960.1 | |
| IL_7OSM_039 | 1/18S/817:823, 1/18S/849:854 | Tandem non-canonical cWW pairs with near WC pairs Not in a motif group | geometric IL_4EYA_005 IL_04668.1 | |
| IL_7OSM_040 | 1/18S/865:866, 1/18S/962:965 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_7OSM_041 | 1/18S/867:870, 1/18S/957:961 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.2 | |
| IL_7OSM_042 | 1/18S/871:874, 1/18S/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_7OSM_043 | 1/18S/874:878, 1/18S/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_7OSM_044 | 1/18S/885:888, 1/18S/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_7OSM_045 | 1/18S/893:899, 1/18S/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_7OSM_046 | 1/18S/985:990, 1/18S/1014:1016 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_7OSM_047 | 1/18S/990:994, 1/18S/1010:1014 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_436 IL_17136.1 | |
| IL_7OSM_048 | 1/18S/995:997, 1/18S/1007:1009 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_7OSM_049 | 1/18S/1034:1036, 1/18S/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_7OSM_050 | 1/18S/1041:1044, 1/18S/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_7OSM_051 | 1/18S/1051:1053, 1/18S/1066:1067 | No text annotation Not in a motif group | ||
| IL_7OSM_052 | 1/18S/1111:1118, 1/18S/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_7OSM_053 | 1/18S/1146:1147, 1/18S/1630:1632 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_7OSM_054 | 1/18S/1149:1151, 1/18S/1627:1628 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_7OSM_055 | 1/18S/1157:1160, 1/18S/1617:1621 | C-loop Not in a motif group | geometric IL_1KOG_007 IL_75255.1 | |
| IL_7OSM_056 | 1/18S/1173:1175, 1/18S/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_7OSM_057 | 1/18S/1177:1179, 1/18S/1459:1462 | No text annotation Not in a motif group | geometric IL_4V88_470 IL_51629.2 | |
| IL_7OSM_058 | 1/18S/1213:1215, 1/18S/1448:1450 | No text annotation Not in a motif group | homologous IL_4V88_446 IL_95997.1 | |
| IL_7OSM_059 | 1/18S/1234:1237, 1/18S/1248:1251 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6DTD_001 IL_30621.2 | |
| IL_7OSM_060 | 1/18S/1268:1271, 1/18S/1439:1441 | No text annotation Not in a motif group | geometric IL_5UNE_009 IL_53251.2 | |
| IL_7OSM_061 | 1/18S/1272:1279, 1/18S/1429:1438 | No text annotation Not in a motif group | ||
| IL_7OSM_062 | 1/18S/1279:1281, 1/18S/1426:1429 | No text annotation Not in a motif group | geometric IL_5TBW_079 IL_95997.1 | |
| IL_7OSM_063 | 1/18S/1290:1292, 1/18S/1323:1325 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_7OSM_064 | 1/18S/1306:1308, 1/18S/1317:1318 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_93353.1 | |
| IL_7OSM_065 | 1/18S/1339:1342, 1/18S/1383:1385 | No text annotation Not in a motif group | geometric IL_1XJR_003 IL_10023.1 | |
| IL_7OSM_066 | 1/18S/1342:1349, 1/18S/1376:1383 | No text annotation Not in a motif group | ||
| IL_7OSM_067 | 1/18S/1350:1354, 1/18S/1369:1375 | No text annotation Not in a motif group | ||
| IL_7OSM_068 | 1/18S/1389:1391, 1/18S/1407:1412 | No text annotation Not in a motif group | homologous IL_8C3A_465 IL_58032.1 | |
| IL_7OSM_069 | 1/18S/1488:1494, 1/18S/1513:1518 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_7OSM_070 | 1/18S/1495:1498, 1/18S/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_7OSM_071 | 1/18S/1540:1546, 1/18S/1565:1571 | No text annotation Not in a motif group | homologous IL_8C3A_469 IL_10092.1 | |
| IL_7OSM_072 | 1/18S/1636:1638, 1/18S/1764:1767 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_7OSM_073 | 1/18S/1638:1641, 1/18S/1760:1764 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_7OSM_074 | 1/18S/1642:1644, 1/18S/1757:1759 | No text annotation Not in a motif group | homologous IL_4V88_465 IL_95997.1 | |
| IL_7OSM_075 | 1/18S/1644:1647, 1/18S/1753:1757 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.2 | |
| IL_7OSM_076 | 1/18S/1650:1652, 1/18S/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_7OSM_077 | 1/18S/1653:1656, 1/18S/1744:1747 | Double sheared Not in a motif group | homologous IL_4V88_468 IL_09705.9 | |
| IL_7OSM_078 | 1/18S/1656:1658, 1/18S/1743:1744 | Single bulged U Not in a motif group | geometric IL_4V88_469 IL_83039.13 | |
| IL_7OSM_079 | 1/18S/1665:1667, 1/18S/1734:1736 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_7OSM_080 | 1/18S/1669:1672, 1/18S/1729:1732 | Double sheared Not in a motif group | geometric IL_4V88_471 IL_09705.9 | |
| IL_7OSM_081 | 1/18S/1672:1674, 1/18S/1727:1729 | No text annotation Not in a motif group | homologous IL_4V88_472 IL_95997.1 | |
| IL_7OSM_082 | 1/18S/1675:1678, 1/18S/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_7OSM_083 | 1/18S/1678:1682, 1/18S/1719:1723 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_7OSM_084 | 1/25S/7:8, 1/58S/150:152 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_7OSM_085 | 1/25S/13:15, 1/58S/144:145 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_7OSM_086 | 1/25S/27:28, 1/25S/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_7OSM_087 | 1/25S/31:38, 1/25S/45:53 | tSH-tHW-tHH-tHS Not in a motif group | geometric IL_5TBW_005 IL_35728.2 | |
| IL_7OSM_088 | 1/25S/82:89, 1/25S/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_7OSM_089 | 1/25S/123:124, 1/25S/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_7OSM_090 | 1/25S/125:127, 1/25S/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_7OSM_091 | 1/25S/163:166, 1/25S/256:258 | No text annotation Not in a motif group | ||
| IL_7OSM_092 | 1/25S/169:171, 1/25S/247:253 | No text annotation Not in a motif group | ||
| IL_7OSM_093 | 1/25S/176:178, 1/25S/238:242 | No text annotation Not in a motif group | ||
| IL_7OSM_094 | 1/25S/183:185, 1/25S/232:233 | Single stack bend Not in a motif group | geometric IL_4LFB_041 IL_76488.2 | |
| IL_7OSM_095 | 1/25S/337:339, 1/58S/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.2 | |
| IL_7OSM_096 | 1/25S/376:379, 1/25S/390:403 | No text annotation Not in a motif group | homologous IL_8C3A_015 IL_60992.6 | |
| IL_7OSM_097 | 1/25S/404:410, 1/58S/13:19 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5TBW_015 IL_66414.6 | |
| IL_7OSM_098 | 1/25S/429:431, 1/25S/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_7OSM_100 | 1/25S/512:513, 1/25S/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.2 | |
| IL_7OSM_101 | 1/25S/517:525, 1/25S/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_7OSM_102 | 1/25S/529:538, 1/25S/553:563 | No text annotation Not in a motif group | ||
| IL_7OSM_103 | 1/25S/668:670, 1/25S/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_7OSM_104 | 1/25S/680:684, 1/25S/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_7OSM_105 | 1/25S/725:728, 1/25S/741:745 | UAA/GAN Not in a motif group | homologous IL_5TBW_023 IL_07235.1 | |
| IL_7OSM_106 | 1/25S/752:753, 1/25S/779:781 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.2 | |
| IL_7OSM_107 | 1/25S/755:756, 1/25S/775:777 | Single bulged U Not in a motif group | homologous IL_5TBW_025 IL_83039.13 | |
| IL_7OSM_108 | 1/25S/758:763, 1/25S/768:773 | No text annotation Not in a motif group | homologous IL_8C3A_028 IL_19954.2 | |
| IL_7OSM_109 | 1/25S/803:805, 1/25S/938:940 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_95997.1 | |
| IL_7OSM_110 | 1/25S/805:809, 1/25S/931:938 | No text annotation Not in a motif group | homologous IL_8C3A_030 IL_17470.6 | |
| IL_7OSM_111 | 1/25S/828:829, 1/25S/895:897 | Single bulged A Not in a motif group | geometric IL_4V9F_025 IL_37497.2 | |
| IL_7OSM_112 | 1/25S/833:834, 1/25S/859:861 | Single bulged G Not in a motif group | geometric IL_5TBW_029 IL_00225.2 | |
| IL_7OSM_113 | 1/25S/834:838, 1/25S/855:859 | No text annotation Not in a motif group | homologous IL_8C3A_033 IL_56467.8 | |
| IL_7OSM_114 | 1/25S/869:872, 1/25S/888:890 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_7OSM_115 | 1/25S/873:875, 1/25S/886:887 | Single bulged U Not in a motif group | homologous IL_5TBW_032 IL_83039.13 | |
| IL_7OSM_116 | 1/25S/907:909, 1/25S/919:923 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.6 | |
| IL_7OSM_117 | 1/25S/969:970, 1/25S/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_7OSM_118 | 1/25S/977:982, 1/25S/1101:1104 | No text annotation Not in a motif group | ||
| IL_7OSM_119 | 1/25S/983:985, 1/25S/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_7OSM_120 | 1/25S/991:997, 1/25S/1052:1058 | No text annotation Not in a motif group | homologous IL_8C3A_041 IL_93830.3 | |
| IL_7OSM_121 | 1/25S/997:998, 1/25S/1050:1052 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_42622.2 | |
| IL_7OSM_122 | 1/25S/999:1004, 1/25S/1046:1049 | No text annotation Not in a motif group | homologous IL_8C3A_043 IL_02509.1 | |
| IL_7OSM_123 | 1/25S/1006:1009, 1/25S/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_30621.2 | |
| IL_7OSM_124 | 1/25S/1009:1011, 1/25S/1039:1041 | No text annotation Not in a motif group | homologous IL_8C3A_045 IL_95997.1 | |
| IL_7OSM_125 | 1/25S/1013:1020, 1/25S/1032:1037 | No text annotation Not in a motif group | ||
| IL_7OSM_126 | 1/25S/1069:1072, 1/25S/1086:1089 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_003 IL_30621.2 | |
| IL_7OSM_127 | 1/25S/1074:1076, 1/25S/1083:1084 | No text annotation Not in a motif group | homologous IL_8C3A_048 IL_00225.2 | |
| IL_7OSM_128 | 1/25S/1120:1122, 1/25S/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_7OSM_129 | 1/25S/1167:1171, 1/25S/1328:1332 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.2 | |
| IL_7OSM_130 | 1/25S/1173:1180, 1/25S/1325:1326 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5TBW_049 IL_15861.7 | |
| IL_7OSM_131 | 1/25S/1180:1182, 1/25S/1324:1325 | Single bulged U Not in a motif group | homologous IL_5TBW_050 IL_83039.13 | |
| IL_7OSM_132 | 1/25S/1187:1194, 1/25S/1314:1319 | No text annotation Not in a motif group | geometric IL_5TBW_051 IL_27086.1 | |
| IL_7OSM_133 | 1/25S/1194:1205, 1/25S/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_7OSM_134 | 1/25S/1207:1209, 1/25S/1296:1297 | No text annotation Not in a motif group | homologous IL_8C3A_056 IL_83039.13 | |
| IL_7OSM_135 | 1/25S/1218:1226, 1/25S/1283:1287 | Kink-turn Not in a motif group | homologous IL_5TBW_054 IL_90538.4 | |
| IL_7OSM_136 | 1/25S/1234:1238, 1/25S/1250:1254 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_7OSM_137 | 1/25S/1262:1266, 1/25S/1275:1277 | No text annotation Not in a motif group | homologous IL_8C3A_059 IL_05564.2 | |
| IL_7OSM_138 | 1/25S/1376:1378, 1/25S/1428:1431 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_7OSM_139 | 1/25S/1385:1387, 1/25S/1420:1421 | Single bulged A Not in a motif group | homologous IL_5TBW_058 IL_37497.2 | |
| IL_7OSM_140 | 1/25S/1388:1395, 1/25S/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_7OSM_141 | 1/25S/1398:1400, 1/25S/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_7OSM_142 | 1/25S/1444:1450, 1/25S/2354:2359 | No text annotation Not in a motif group | homologous IL_8C3A_065 IL_76042.2 | |
| IL_7OSM_143 | 1/25S/1500:1505, 1/25S/1513:1516 | No text annotation Not in a motif group | homologous IL_5TBW_062 IL_93630.2 | |
| IL_7OSM_144 | 1/25S/1532:1536, 1/25S/1585:1590 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_7OSM_145 | 1/25S/1618:1622, 1/25S/1823:1826 | No text annotation Not in a motif group | geometric IL_1J2B_001 IL_58686.2 | |
| IL_7OSM_146 | 1/25S/1623:1624, 1/25S/1819:1822 | No text annotation Not in a motif group | ||
| IL_7OSM_147 | 1/25S/1626:1631, 1/25S/1811:1817 | No text annotation Not in a motif group | ||
| IL_7OSM_148 | 1/25S/1645:1649, 1/25S/1806:1810 | No text annotation Not in a motif group | homologous IL_8C3A_073 IL_56467.8 | |
| IL_7OSM_149 | 1/25S/1661:1663, 1/25S/1786:1788 | No text annotation Not in a motif group | homologous IL_8C3A_074 IL_95997.1 | |
| IL_7OSM_150 | 1/25S/1669:1670, 1/25S/1778:1780 | No text annotation Not in a motif group | homologous IL_8C3A_075 IL_61258.12 | |
| IL_7OSM_151 | 1/25S/1670:1671, 1/25S/1776:1778 | Single stack bend Not in a motif group | homologous IL_5TBW_070 IL_76488.2 | |
| IL_7OSM_152 | 1/25S/1694:1698, 1/25S/1747:1752 | No text annotation Not in a motif group | homologous IL_8C3A_077 IL_69313.1 | |
| IL_7OSM_153 | 1/25S/1702:1707, 1/25S/1737:1743 | No text annotation Not in a motif group | homologous IL_5TBW_072 IL_39753.1 | |
| IL_7OSM_154 | 1/25S/1711:1717, 1/25S/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_7OSM_155 | 1/25S/1883:1889, 1/25S/2346:2349 | No text annotation Not in a motif group | homologous IL_8C3A_080 IL_49460.2 | |
| IL_7OSM_156 | 1/25S/1895:1897, 1/25S/2338:2340 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_7OSM_157 | 1/25S/1898:1901, 1/25S/2336:2337 | No text annotation Not in a motif group | homologous IL_8C3A_082 IL_50694.2 | |
| IL_7OSM_158 | 1/25S/1901:1906, 1/25S/2333:2336 | Intercalated tWH Not in a motif group | geometric IL_5TBW_077 IL_82842.2 | |
| IL_7OSM_159 | 1/25S/1918:1923, 1/25S/1928:1934 | No text annotation Not in a motif group | homologous IL_8C3A_084 IL_65969.2 | |
| IL_7OSM_160 | 1/25S/1940:1942, 1/25S/2106:2108 | No text annotation Not in a motif group | homologous IL_5TBW_079 IL_95997.1 | |
| IL_7OSM_161 | 1/25S/1947:1948, 1/25S/2098:2101 | No text annotation Not in a motif group | homologous IL_5TBW_080 IL_74125.1 | |
| IL_7OSM_162 | 1/25S/2128:2129, 1/25S/2323:2325 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_37497.2 | |
| IL_7OSM_163 | 1/25S/2156:2161, 1/25S/2173:2180 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_7OSM_164 | 1/25S/2196:2199, 1/25S/2245:2246 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_7OSM_165 | 1/25S/2200:2201, 1/25S/2241:2244 | No text annotation Not in a motif group | homologous IL_8C3A_090 IL_16396.2 | |
| IL_7OSM_166 | 1/25S/2204:2206, 1/25S/2237:2238 | Single bulged U Not in a motif group | geometric IL_3TZR_002 IL_83039.13 | |
| IL_7OSM_167 | 1/25S/2206:2210, 1/25S/2235:2237 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_087 IL_63450.2 | |
| IL_7OSM_168 | 1/25S/2211:2217, 1/25S/2228:2234 | No text annotation Not in a motif group | homologous IL_5TBW_088 IL_36973.6 | |
| IL_7OSM_169 | 1/25S/2276:2277, 1/25S/2307:2310 | No text annotation Not in a motif group | homologous IL_8C3A_094 IL_59677.2 | |
| IL_7OSM_170 | 1/25S/2277:2288, 1/25S/2304:2307 | No text annotation Not in a motif group | homologous IL_8C3A_095 IL_81589.2 | |
| IL_7OSM_171 | 1/25S/2391:2394, 1/25S/2986:2988 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_7OSM_172 | 1/25S/2396:2398, 1/25S/2981:2984 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_7OSM_173 | 1/25S/2409:2411, 1/25S/2811:2812 | Single bulged U Not in a motif group | homologous IL_5TBW_093 IL_83039.13 | |
| IL_7OSM_174 | 1/25S/2412:2413, 1/25S/2807:2810 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_7OSM_175 | 1/25S/2423:2425, 1/25S/2604:2607 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_7OSM_176 | 1/25S/2520:2526, 1/25S/2584:2587 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_7OSM_177 | 1/25S/2614:2615, 1/25S/2625:2627 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.2 | |
| IL_7OSM_178 | 1/25S/2666:2668, 1/25S/2686:2690 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5TBW_099 IL_38958.7 | |
| IL_7OSM_179 | 1/25S/2718:2721, 1/25S/2735:2738 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.2 | |
| IL_7OSM_180 | 1/25S/2770:2773, 1/25S/2787:2788 | No text annotation Not in a motif group | homologous IL_8C3A_110 IL_76488.2 | |
| IL_7OSM_181 | 1/25S/2823:2824, 1/25S/2865:2867 | Major groove platform Not in a motif group | homologous IL_5TBW_102 IL_27635.1 | |
| IL_7OSM_182 | 1/25S/2824:2826, 1/25S/2863:2865 | No text annotation Not in a motif group | geometric IL_5TBW_103 IL_95997.1 | |
| IL_7OSM_183 | 1/25S/2826:2828, 1/25S/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_7OSM_184 | 1/25S/2828:2830, 1/25S/2858:2862 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_92788.2 | |
| IL_7OSM_185 | 1/25S/2835:2839, 1/25S/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_7OSM_186 | 1/25S/2876:2877, 1/25S/2949:2951 | No text annotation Not in a motif group | homologous IL_8C3A_115 IL_76223.2 | |
| IL_7OSM_187 | 1/25S/2879:2881, 1/25S/2943:2947 | No text annotation Not in a motif group | homologous IL_8C3A_116 IL_90933.2 | |
| IL_7OSM_188 | 1/25S/2881:2882, 1/25S/2940:2943 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_7OSM_189 | 1/25S/2889:2891, 1/25S/2912:2914 | No text annotation Not in a motif group | homologous IL_8C3A_118 IL_51629.2 | |
| IL_7OSM_190 | 1/25S/2891:2892, 1/25S/2909:2912 | Minor groove platform with intercalation Not in a motif group | geometric IL_5TBW_111 IL_95601.3 | |
| IL_7OSM_191 | 1/25S/2918:2920, 1/25S/2926:2928 | No text annotation Not in a motif group | geometric IL_5TBW_112 IL_95997.1 | |
| IL_7OSM_192 | 1/25S/2960:2961, 1/25S/2970:2972 | Single bulged A Not in a motif group | homologous IL_5TBW_113 IL_37497.2 | |
| IL_7OSM_193 | 1/25S/3004:3007, 1/25S/3139:3144 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.9 | |
| IL_7OSM_194 | 1/25S/3012:3014, 1/25S/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_7OSM_195 | 1/25S/3018:3025, 1/25S/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_7OSM_196 | 1/25S/3047:3051, 1/25S/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_7OSM_197 | 1/25S/3054:3059, 1/25S/3084:3088 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_7OSM_198 | 1/25S/3063:3064, 1/25S/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.2 | |
| IL_7OSM_199 | 1/25S/3103:3107, 1/25S/3127:3131 | No text annotation Not in a motif group | homologous IL_8C3A_129 IL_89002.2 | |
| IL_7OSM_200 | 1/25S/3164:3166, 1/25S/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_7OSM_201 | 1/25S/3168:3170, 1/25S/3280:3282 | No text annotation Not in a motif group | homologous IL_5TBW_122 IL_95997.1 | |
| IL_7OSM_202 | 1/25S/3177:3179, 1/25S/3210:3211 | Single bulged A Not in a motif group | homologous IL_5TBW_123 IL_37497.2 | |
| IL_7OSM_203 | 1/25S/3179:3188, 1/25S/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_7OSM_204 | 1/25S/3193:3194, 1/25S/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_7OSM_205 | 1/25S/3223:3230, 1/25S/3257:3262 | No text annotation Not in a motif group | ||
| IL_7OSM_206 | 1/25S/3233:3235, 1/25S/3252:3254 | No text annotation Not in a motif group | homologous IL_5TBW_127 IL_95997.1 | |
| IL_7OSM_207 | 1/25S/3235:3238, 1/25S/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3R2D_002 IL_30621.2 | |
| IL_7OSM_208 | 1/25S/3318:3320, 1/25S/3387:3388 | Single bulged U Not in a motif group | geometric IL_5J7L_298 IL_83039.13 | |
| IL_7OSM_209 | 1/25S/3324:3325, 1/25S/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_7OSM_210 | 1/25S/3328:3330, 1/25S/3373:3378 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.2 | |
| IL_7OSM_211 | 1/25S/3332:3337, 1/25S/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.5 | |
| IL_7OSM_212 | 1/25S/3340:3342, 1/25S/3363:3364 | Single bulged U Not in a motif group | homologous IL_5TBW_134 IL_83039.13 | |
| IL_7OSM_213 | 1/25S/3342:3345, 1/25S/3360:3363 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_7OSM_214 | 1/58S/64:67, 1/58S/92:96 | No text annotation Not in a motif group | ||
| IL_7OSM_215 | 1/58S/68:69, 1/58S/89:91 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.13 | |
| IL_7OSM_216 | 1/58S/69:73, 1/58S/78:89 | No text annotation Not in a motif group | homologous IL_5TBW_147 IL_39287.1 | |
| IL_7OSM_217 | 1/AB/15:16, 1/AB/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_7OSM_218 | 1/AB/21:27, 1/AB/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_7OSM_219 | 1/AB/28:29, 1/AB/49:52 | Minor groove platform Not in a motif group | geometric IL_5TBW_374 IL_63797.2 | |
| IL_7OSM_220 | 1/AB/29:30, 1/AB/47:49 | Single stack bend Not in a motif group | homologous IL_5TBW_375 IL_76488.2 | |
| IL_7OSM_221 | 1/AB/32:36, 1/AB/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
| IL_7OSM_222 | 1/AB/72:80, 1/AB/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_7OSM_223 | 1/AB/84:87, 1/AB/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7OSM_014 | Isolated tHS basepair with bulges | ||
| IL_7OSM_099 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7OSM_001 | 1/18S/41:42, 1/18S/433:439, 1/18S/464:466 | No text annotation Not in a motif group | ||
| J3_7OSM_002 | 1/18S/633:635, 1/18S/861:865, 1/18S/965:966 | No text annotation Not in a motif group | ||
| J3_7OSM_003 | 1/18S/760:763, 1/18S/773:775, 1/18S/785:790 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_7OSM_004 | 1/18S/881:884, 1/18S/928:936, 1/18S/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_7OSM_005 | 1/18S/1037:1039, 1/18S/1079:1083, 1/18S/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_7OSM_006 | 1/18S/1161:1164, 1/18S/1581:1587, 1/18S/1609:1616 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_7OSM_007 | 1/18S/1168:1172, 1/18S/1467:1470, 1/18S/1574:1577 | No text annotation Not in a motif group | ||
| J3_7OSM_008 | 1/18S/1179:1187, 1/18S/1198:1209, 1/18S/1454:1459 | No text annotation Not in a motif group | ||
| J3_7OSM_009 | 1/18S/1215:1222, 1/18S/1261:1267, 1/18S/1442:1448 | No text annotation Not in a motif group | ||
| J3_7OSM_010 | 1/18S/1283:1288, 1/18S/1327:1332, 1/18S/1419:1424 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_7OSM_011 | 1/18S/1293:1294, 1/18S/1303:1306, 1/18S/1318:1322 | No text annotation Not in a motif group | ||
| J3_7OSM_012 | 1/18S/1336:1338, 1/18S/1386:1389, 1/18S/1412:1415 | No text annotation Not in a motif group | homologous J3_4V88_040 NA | |
| J3_7OSM_013 | 1/18S/1470:1474, 1/18S/1533:1540, 1/18S/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA | |
| J3_7OSM_014 | 1/25S/113:123, 1/25S/149:158, 1/25S/263:267 | No text annotation Not in a motif group | ||
| J3_7OSM_015 | 1/25S/369:376, 1/25S/403:404, 1/58S/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_7OSM_016 | 1/25S/502:503, 1/25S/588:597, 1/25S/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_7OSM_017 | 1/25S/814:820, 1/25S/905:907, 1/25S/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_7OSM_018 | 1/25S/829:831, 1/25S/863:867, 1/25S/892:895 | No text annotation Not in a motif group | homologous J3_8C3A_004 NA | |
| J3_7OSM_019 | 1/25S/986:987, 1/25S/1062:1066, 1/25S/1092:1098 | No text annotation Not in a motif group | ||
| J3_7OSM_020 | 1/25S/1230:1232, 1/25S/1256:1262, 1/25S/1277:1279 | No text annotation Not in a motif group | homologous J3_8C3A_005 NA | |
| J3_7OSM_021 | 1/25S/1479:1485, 1/25S/1857:1859, 1/25S/1871:1874 | No text annotation Not in a motif group | homologous J3_8C3A_006 NA | |
| J3_7OSM_022 | 1/25S/1488:1491, 1/25S/1837:1843, 1/25S/1852:1854 | No text annotation Not in a motif group | homologous J3_5TBW_009 NA | |
| J3_7OSM_023 | 1/25S/1526:1531, 1/25S/1591:1595, 1/25S/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_7OSM_024 | 1/25S/1631:1632, 1/25S/1641:1645, 1/25S/1810:1811 | No text annotation Not in a motif group | ||
| J3_7OSM_025 | 1/25S/2432:2435, 1/25S/2512:2517, 1/25S/2590:2597 | No text annotation Not in a motif group | homologous J3_8C3A_008 NA | |
| J3_7OSM_026 | 1/25S/2664:2666, 1/25S/2690:2692, 1/25S/2701:2706 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_7OSM_027 | 1/25S/2886:2889, 1/25S/2914:2916, 1/25S/2930:2936 | No text annotation Not in a motif group | homologous J3_5TBW_014 NA | |
| J3_7OSM_028 | 1/25S/3298:3303, 1/25S/3311:3318, 1/25S/3388:3390 | No text annotation Not in a motif group | ||
| J3_7OSM_029 | 1/58S/44:45, 1/58S/58:64, 1/58S/96:100 | No text annotation Not in a motif group | ||
| J3_7OSM_030 | 1/AB/9:14, 1/AB/66:67, 1/AB/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA |
Problematic loops
No problematic loops
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