Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8BHF_0011/21/13:22No text annotation
Not in a motif group
homologous
HL_4LCK_001
NA
HL_8BHF_0021/21/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_4TUE_034
HL_53597.2
HL_8BHF_0031/21/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_6PMO_005
HL_22280.1
HL_8BHF_0041/A2/37:44No text annotation
Not in a motif group
HL_8BHF_0051/A2/68:73No text annotation
Not in a motif group
homologous
HL_8C3A_002
HL_02862.2
HL_8BHF_0061/A2/89:95No text annotation
Not in a motif group
homologous
HL_5TBW_003
HL_67216.7
HL_8BHF_0071/A2/131:137No text annotation
Not in a motif group
HL_8BHF_0081/A2/204:211No text annotation
Not in a motif group
homologous
HL_8C3A_005
HL_89380.2
HL_8BHF_0091/A2/222:226No text annotation
Not in a motif group
homologous
HL_8C3A_006
HL_98984.2
HL_8BHF_0101/A2/230:238No text annotation
Not in a motif group
homologous
HL_5TBW_007
HL_08002.8
HL_8BHF_0111/A2/289:298No text annotation
Not in a motif group
homologous
HL_8C3A_008
HL_71554.2
HL_8BHF_0121/A2/314:323No text annotation
Not in a motif group
homologous
HL_8C3A_009
HL_12078.2
HL_8BHF_0131/A2/368:373No text annotation
Not in a motif group
homologous
HL_8C3A_010
HL_42097.1
HL_8BHF_0141/A2/393:398No text annotation
Not in a motif group
homologous
HL_8C3A_011
HL_42097.1
HL_8BHF_0151/A2/882:902No text annotation
Not in a motif group
HL_8BHF_0161/A2/963:971No text annotation
Not in a motif group
HL_8BHF_0171/A2/1175:1182No text annotation
Not in a motif group
HL_8BHF_0181/A2/1315:1324No text annotation
Not in a motif group
homologous
HL_8C3A_014
HL_89380.2
HL_8BHF_0191/A2/1361:1372No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_23083.1
HL_8BHF_0201/A2/1387:1392No text annotation
Not in a motif group
homologous
HL_8C3A_016
HL_42097.1
HL_8BHF_0211/A2/1406:1409No text annotation
Not in a motif group
HL_8BHF_0221/A2/1436:1448No text annotation
Not in a motif group
geometric
HL_1ZCI_002
HL_12078.2
HL_8BHF_0231/A2/1479:1486Other HL
Not in a motif group
geometric
HL_5J7L_200
HL_34168.2
HL_8BHF_0241/A2/1561:1566No text annotation
Not in a motif group
homologous
HL_8C3A_019
HL_42097.1
HL_8BHF_0251/A2/1593:1602No text annotation
Not in a motif group
homologous
HL_5TBW_020
HL_39334.6
HL_8BHF_0261/A2/1627:1635No text annotation
Not in a motif group
homologous
HL_8C3A_021
HL_33817.1
HL_8BHF_0271/A2/1675:1680No text annotation
Not in a motif group
homologous
HL_8C3A_022
HL_96598.1
HL_8BHF_0281/A2/1761:1771No text annotation
Not in a motif group
HL_8BHF_0291/A2/1816:1823No text annotation
Not in a motif group
homologous
HL_5TBW_024
HL_71554.2
HL_8BHF_0301/A2/1864:1870No text annotation
Not in a motif group
homologous
HL_8C3A_025
HL_42097.1
HL_8BHF_0311/A2/1886:1893No text annotation
Not in a motif group
homologous
HL_5TBW_026
HL_64430.2
HL_8BHF_0321/A2/1973:1993No text annotation
Not in a motif group
HL_8BHF_0331/A2/2006:2013No text annotation
Not in a motif group
homologous
HL_8C3A_028
HL_84085.2
HL_8BHF_0341/A2/2087:2273No text annotation
Not in a motif group
HL_8BHF_0351/A2/2320:2325No text annotation
Not in a motif group
homologous
HL_8C3A_030
HL_42097.1
HL_8BHF_0361/A2/2379:2387No text annotation
Not in a motif group
homologous
HL_8C3A_031
HL_89380.2
HL_8BHF_0371/A2/2423:2429No text annotation
Not in a motif group
homologous
HL_5TBW_032
HL_46680.1
HL_8BHF_0381/A2/2461:2466No text annotation
Not in a motif group
homologous
HL_8C3A_033
HL_76539.2
HL_8BHF_0391/A2/2490:2494No text annotation
Not in a motif group
HL_8BHF_0401/A2/2526:2535No text annotation
Not in a motif group
homologous
HL_8C3A_035
HL_69023.2
HL_8BHF_0411/A2/2564:2569GNRA
Not in a motif group
geometric
HL_2ZZM_003
HL_42097.1
HL_8BHF_0421/A2/2581:2586GNRA
Not in a motif group
homologous
HL_5TBW_036
HL_42097.1
HL_8BHF_0431/A2/2627:2635No text annotation
Not in a motif group
homologous
HL_8C3A_037
HL_60812.1
HL_8BHF_0441/A2/2667:2673No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_8BHF_0451/A2/2708:2713No text annotation
Not in a motif group
geometric
HL_4V9F_003
HL_52841.1
HL_8BHF_0461/A2/2741:2745No text annotation
Not in a motif group
homologous
HL_8C3A_040
HL_49678.1
HL_8BHF_0471/A2/2795:2802No text annotation
Not in a motif group
homologous
HL_5TBW_041
HL_64430.2
HL_8BHF_0481/A2/2813:2819GNRA with one bulged base
Not in a motif group
homologous
HL_5TBW_042
HL_42097.1
HL_8BHF_0491/A2/2875:2880UNCG
Not in a motif group
geometric
HL_4PMI_004
HL_03562.2
HL_8BHF_0501/A2/2904:3593No text annotation
Not in a motif group
HL_8BHF_0511/A2/3609:3613No text annotation
Not in a motif group
homologous
HL_8C3A_045
HL_20062.1
HL_8BHF_0521/A2/3634:3644No text annotation
Not in a motif group
homologous
HL_5TBW_046
HL_43613.5
HL_8BHF_0531/A2/3663:3669No text annotation
Not in a motif group
homologous
HL_8C3A_047
HL_42097.1
HL_8BHF_0541/A2/3719:3724No text annotation
Not in a motif group
homologous
HL_8C3A_048
HL_42097.1
HL_8BHF_0551/A2/3752:3762No text annotation
Not in a motif group
homologous
HL_8C3A_049
HL_71924.2
HL_8BHF_0561/A2/3791:3799No text annotation
Not in a motif group
homologous
HL_8C3A_050
HL_51824.1
HL_8BHF_0571/A2/3868:3877No text annotation
Not in a motif group
homologous
HL_8C3A_051
HL_90642.6
HL_8BHF_0581/A2/3971:4029No text annotation
Not in a motif group
HL_8BHF_0591/A2/4094:4101No text annotation
Not in a motif group
HL_8BHF_0601/A2/4179:4187No text annotation
Not in a motif group
homologous
HL_8C3A_055
HL_53171.2
HL_8BHF_0611/A2/4196:4208No text annotation
Not in a motif group
homologous
HL_8C3A_056
HL_19870.6
HL_8BHF_0621/A2/4236:4244No text annotation
Not in a motif group
homologous
HL_8C3A_057
HL_76406.4
HL_8BHF_0631/A2/4256:4263No text annotation
Not in a motif group
homologous
HL_5TBW_057
HL_12078.2
HL_8BHF_0641/A2/4287:4295No text annotation
Not in a motif group
homologous
HL_8C3A_059
HL_92229.2
HL_8BHF_0651/A2/4307:4312GNRA
Not in a motif group
homologous
HL_5TBW_059
HL_42097.1
HL_8BHF_0661/A2/4338:4348No text annotation
Not in a motif group
geometric
HL_4V83_139
HL_53597.2
HL_8BHF_0671/A2/4403:4411No text annotation
Not in a motif group
homologous
HL_5TBW_061
HL_06192.2
HL_8BHF_0681/A2/4460:4467No text annotation
Not in a motif group
homologous
HL_8C3A_063
HL_88526.2
HL_8BHF_0691/A2/4483:4489No text annotation
Not in a motif group
geometric
HL_5TBW_063
HL_43656.2
HL_8BHF_0701/A2/4526:4531No text annotation
Not in a motif group
homologous
HL_8C3A_065
HL_42097.1
HL_8BHF_0711/A2/4589:4594GNRA
Not in a motif group
geometric
HL_4V9F_066
HL_42097.1
HL_8BHF_0721/A2/4632:4637No text annotation
Not in a motif group
homologous
HL_8C3A_067
HL_46680.1
HL_8BHF_0731/A2/4674:4688No text annotation
Not in a motif group
homologous
HL_8C3A_068
HL_56677.7
HL_8BHF_0741/A2/4762:4841No text annotation
Not in a motif group
HL_8BHF_0751/A2/4888:4897No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2
HL_8BHF_0761/A2/4957:4965No text annotation
Not in a motif group
homologous
HL_8C3A_071
HL_27930.1
HL_8BHF_0771/A2/5003:5010No text annotation
Not in a motif group
homologous
HL_8C3A_072
HL_53837.1
HL_8BHF_0781/A3/7:17No text annotation
Not in a motif group
homologous
HL_4V88_186
HL_89881.2
HL_8BHF_0791/A3/69:80No text annotation
Not in a motif group
geometric
HL_361D_002
HL_90617.2
HL_8BHF_0801/A3/156:162Other HL
Not in a motif group
homologous
HL_4V88_188
HL_76539.2
HL_8BHF_0811/A3/197:202GNRA
Not in a motif group
geometric
HL_5J7L_007
HL_42097.1
HL_8BHF_0821/A3/288:295T-loop with 1 bulged base
Not in a motif group
geometric
HL_4V88_191
HL_27930.1
HL_8BHF_0831/A3/322:329No text annotation
Not in a motif group
HL_8BHF_0841/A3/377:387No text annotation
Not in a motif group
HL_8BHF_0851/A3/416:421No text annotation
Not in a motif group
homologous
HL_4V88_194
HL_50142.2
HL_8BHF_0861/A3/441:452No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_8BHF_0871/A3/462:467UNCG
Not in a motif group
homologous
HL_4V88_196
HL_03562.2
HL_8BHF_0881/A3/498:504No text annotation
Not in a motif group
homologous
HL_4V88_197
HL_09136.1
HL_8BHF_0891/A3/539:544Other HL
Not in a motif group
geometric
HL_5J7L_190
HL_87030.2
HL_8BHF_0901/A3/569:581No text annotation
Not in a motif group
geometric
HL_4V88_199
HL_06285.2
HL_8BHF_0911/A3/618:623Other HL
Not in a motif group
homologous
HL_4V88_200
HL_53845.1
HL_8BHF_0921/A3/751:792No text annotation
Not in a motif group
HL_8BHF_0931/A3/820:828No text annotation
Not in a motif group
homologous
HL_4V88_203
HL_46766.2
HL_8BHF_0941/A3/833:841No text annotation
Not in a motif group
HL_8BHF_0951/A3/884:902No text annotation
Not in a motif group
HL_8BHF_0961/A3/957:966No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_12326.1
HL_8BHF_0971/A3/994:999Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_8BHF_0981/A3/1054:1064No text annotation
Not in a motif group
homologous
HL_4V88_208
HL_12326.1
HL_8BHF_0991/A3/1114:1119No text annotation
Not in a motif group
geometric
HL_5TBW_044
HL_09829.1
HL_8BHF_1001/A3/1141:1146Other HL
Not in a motif group
homologous
HL_4V88_210
HL_42097.1
HL_8BHF_1011/A3/1178:1183GNRA
Not in a motif group
homologous
HL_4V88_211
HL_42097.1
HL_8BHF_1021/A3/1245:1254No text annotation
Not in a motif group
homologous
HL_4V88_212
HL_73530.2
HL_8BHF_1031/A3/1295:1304No text annotation
Not in a motif group
homologous
HL_4V88_213
HL_53597.2
HL_8BHF_1041/A3/1353:1358GNRA
Not in a motif group
homologous
HL_4V88_214
HL_42097.1
HL_8BHF_1051/A3/1366:1373No text annotation
Not in a motif group
homologous
HL_4V88_215
HL_71554.2
HL_8BHF_1061/A3/1416:1424No text annotation
Not in a motif group
HL_8BHF_1071/A3/1460:1466No text annotation
Not in a motif group
homologous
HL_4V88_217
HL_42097.1
HL_8BHF_1081/A3/1565:1570GNRA
Not in a motif group
homologous
HL_4V88_218
HL_42097.1
HL_8BHF_1091/A3/1614:1625No text annotation
Not in a motif group
homologous
HL_4V88_219
HL_22554.1
HL_8BHF_1101/A3/1658:1666No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_60812.1
HL_8BHF_1111/A3/1759:1773No text annotation
Not in a motif group
HL_8BHF_1121/A3/1847:1852Other HL
Not in a motif group
homologous
HL_4V88_222
HL_16173.1
HL_8BHF_1131/B2/36:41No text annotation
Not in a motif group
geometric
HL_5TBW_185
HL_87939.1
HL_8BHF_1141/B2/86:91GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_42097.1
HL_8BHF_1151/C2/47:56No text annotation
Not in a motif group
geometric
HL_4V9F_001
HL_99167.1
HL_8BHF_1161/C2/68:90No text annotation
Not in a motif group
HL_8BHF_1171/C2/107:112No text annotation
Not in a motif group
homologous
HL_5TBW_075
HL_87939.1
HL_8BHF_1181/C2/121:129No text annotation
Not in a motif group

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8BHF_0011/21/5:7,
1/21/66:68
No text annotation
Not in a motif group
homologous
IL_4WSM_380
NA
IL_8BHF_0021/21/49:52,
1/21/62:65
No text annotation
Not in a motif group
homologous
IL_3AMU_001
NA
IL_8BHF_0031/A2/6:7,
1/C2/149:151
No text annotation
Not in a motif group
homologous
IL_8C3A_002
IL_61258.12
IL_8BHF_0041/A2/12:14,
1/C2/143:144
No text annotation
Not in a motif group
homologous
IL_8C3A_003
IL_83039.13
IL_8BHF_0051/A2/16:18,
1/C2/139:141
No text annotation
Not in a motif group
geometric
IL_1Y27_001
IL_51629.2
IL_8BHF_0061/A2/26:27,
1/A2/55:57
No text annotation
Not in a motif group
homologous
IL_8C3A_004
IL_76488.2
IL_8BHF_0071/A2/30:37,
1/A2/44:52
9x8 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4WF9_008
IL_35728.2
IL_8BHF_0081/A2/81:88,
1/A2/96:102
No text annotation
Not in a motif group
homologous
IL_8C3A_006
IL_88613.1
IL_8BHF_0091/A2/118:121,
1/A2/152:153
Stack outside cWW
Not in a motif group
geometric
IL_5J7L_268
IL_37629.1
IL_8BHF_0101/A2/121:122,
1/A2/147:152
No text annotation
Not in a motif group
geometric
IL_5TBW_007
IL_19724.2
IL_8BHF_0111/A2/125:126,
1/A2/142:144
Single bulged C
Not in a motif group
geometric
IL_1DQF_001
IL_61258.12
IL_8BHF_0121/A2/168:173,
1/A2/263:267
No text annotation
Not in a motif group
IL_8BHF_0131/A2/180:182,
1/A2/255:256
Single stack bend
Not in a motif group
geometric
IL_5TBW_035
IL_76488.2
IL_8BHF_0141/A2/182:189,
1/A2/252:255
No text annotation
Not in a motif group
geometric
IL_6AZ4_001
IL_69145.1
IL_8BHF_0151/A2/195:196,
1/A2/244:246
Single bulged C
Not in a motif group
geometric
IL_1DQF_001
IL_61258.12
IL_8BHF_0161/A2/199:201,
1/A2/214:215
No text annotation
Not in a motif group
homologous
IL_8C3A_013
IL_83039.13
IL_8BHF_0181/A2/348:350,
1/C2/25:26
No text annotation
Not in a motif group
homologous
IL_8C3A_014
IL_37497.2
IL_8BHF_0191/A2/387:390,
1/A2/401:414
No text annotation
Not in a motif group
homologous
IL_5TBW_014
IL_60992.6
IL_8BHF_0201/A2/415:421,
1/C2/13:19
No text annotation
Not in a motif group
homologous
IL_8C3A_016
IL_66414.6
IL_8BHF_0211/A2/443:446,
1/A2/1298:1302
No text annotation
Not in a motif group
geometric
IL_4PHY_003
IL_23164.1
IL_8BHF_0221/A2/448:450,
1/A2/1295:1296
No text annotation
Not in a motif group
IL_8BHF_0231/A2/459:460,
1/A2/696:698
Single bulged C
Not in a motif group
geometric
IL_1S03_002
IL_61258.12
IL_8BHF_0241/A2/462:464,
1/A2/692:694
No text annotation
Not in a motif group
geometric
IL_3DIL_006
IL_95997.1
IL_8BHF_0251/A2/466:472,
1/A2/683:690
No text annotation
Not in a motif group
IL_8BHF_0261/A2/480:483,
1/A2/673:675
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.1
IL_8BHF_0271/A2/483:486,
1/A2/672:673
Multiple bulged bases
Not in a motif group
geometric
IL_7V9E_001
IL_59677.2
IL_8BHF_0281/A2/488:489,
1/A2/666:670
Multiple bulged bases
Not in a motif group
geometric
IL_1R3E_002
IL_59677.2
IL_8BHF_0291/A2/492:494,
1/A2/662:663
Single bulged U
Not in a motif group
geometric
IL_4WF9_030
IL_83039.13
IL_8BHF_0301/A2/498:500,
1/A2/657:658
No text annotation
Not in a motif group
IL_8BHF_0311/A2/509:511,
1/A2/650:651
Single bulged A
Not in a motif group
geometric
IL_6WPI_001
IL_37497.2
IL_8BHF_0321/A2/552:555,
1/A2/639:642
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4WF9_109
IL_30621.2
IL_8BHF_0331/A2/710:711,
1/A2/1284:1286
Single bulged G
Not in a motif group
geometric
IL_4LFB_036
IL_00225.2
IL_8BHF_0341/A2/724:725,
1/A2/943:946
Multiple bulged bases
Not in a motif group
geometric
IL_7V9E_001
IL_59677.2
IL_8BHF_0351/A2/728:732,
1/A2/939:940
No text annotation
Not in a motif group
IL_8BHF_0361/A2/733:736,
1/A2/928:938
No text annotation
Not in a motif group
IL_8BHF_0371/A2/738:741,
1/A2/923:926
No text annotation
Not in a motif group
IL_8BHF_0381/A2/741:742,
1/A2/920:923
No text annotation
Not in a motif group
IL_8BHF_0391/A2/742:745,
1/A2/919:920
No text annotation
Not in a motif group
geometric
IL_6AZ4_001
IL_69145.1
IL_8BHF_0401/A2/747:875,
1/A2/909:917
No text annotation
Not in a motif group
geometric
IL_5TBW_020
IL_07703.1
IL_8BHF_0411/A2/878:880,
1/A2/905:906
Single stack bend
Not in a motif group
geometric
IL_7KGA_003
IL_76488.2
IL_8BHF_0421/A2/880:881,
1/A2/903:905
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_8BHF_0431/A2/980:982,
1/A2/1273:1276
No text annotation
Not in a motif group
IL_8BHF_0441/A2/982:984,
1/A2/1271:1273
UU cWW
Not in a motif group
geometric
IL_3SZX_003
IL_95997.1
IL_8BHF_0451/A2/1072:1074,
1/A2/1232:1234
No text annotation
Not in a motif group
geometric
IL_3IVK_002
IL_95997.1
IL_8BHF_0461/A2/1075:1078,
1/A2/1217:1231
No text annotation
Not in a motif group
IL_8BHF_0471/A2/1080:1082,
1/A2/1211:1215
Isolated cWS basepair
Not in a motif group
geometric
IL_4TS2_003
IL_52767.2
IL_8BHF_0481/A2/1084:1085,
1/A2/1207:1209
Single bulged C
Not in a motif group
geometric
IL_3SN2_001
IL_61258.12
IL_8BHF_0491/A2/1095:1096,
1/A2/1195:1197
Single stack bend
Not in a motif group
geometric
IL_7A0S_054
IL_76488.2
IL_8BHF_0501/A2/1096:1166,
1/A2/1191:1195
No text annotation
Not in a motif group
IL_8BHF_0511/A2/1171:1173,
1/A2/1184:1186
Isolated cWH basepair
Not in a motif group
geometric
IL_3W3S_003
IL_51629.2
IL_8BHF_0521/A2/1355:1358,
1/A2/1377:1380
No text annotation
Not in a motif group
IL_8BHF_0531/A2/1358:1359,
1/A2/1374:1377
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
geometric
IL_1NBS_009
IL_69996.1
IL_8BHF_0551/A2/1425:1429,
1/A2/1455:1460
Triple sheared related
Not in a motif group
geometric
IL_4V9F_018
IL_64879.2
IL_8BHF_0561/A2/1431:1434,
1/A2/1450:1453
Double sheared
Not in a motif group
geometric
IL_4LFB_060
IL_09705.9
IL_8BHF_0571/A2/1467:1468,
1/A2/1496:1498
No text annotation
Not in a motif group
homologous
IL_8C3A_026
IL_37497.2
IL_8BHF_0581/A2/1474:1476,
1/A2/1489:1490
Single stack bend
Not in a motif group
geometric
IL_7A0S_005
IL_76488.2
IL_8BHF_0591/A2/1520:1522,
1/A2/1655:1657
No text annotation
Not in a motif group
homologous
IL_8C3A_029
IL_95997.1
IL_8BHF_0601/A2/1522:1526,
1/A2/1648:1655
No text annotation
Not in a motif group
geometric
IL_5TBW_028
IL_17470.6
IL_8BHF_0611/A2/1550:1551,
1/A2/1576:1578
No text annotation
Not in a motif group
homologous
IL_8C3A_032
IL_00225.2
IL_8BHF_0621/A2/1551:1555,
1/A2/1572:1576
Triple sheared
Not in a motif group
geometric
IL_4V9F_027
IL_56467.8
IL_8BHF_0631/A2/1586:1589,
1/A2/1605:1607
No text annotation
Not in a motif group
homologous
IL_8C3A_034
IL_05564.2
IL_8BHF_0641/A2/1590:1592,
1/A2/1603:1604
No text annotation
Not in a motif group
homologous
IL_8C3A_035
IL_83039.13
IL_8BHF_0651/A2/1624:1626,
1/A2/1636:1640
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_033
IL_90991.6
IL_8BHF_0661/A2/1671:1673,
1/A2/1682:1684
No text annotation
Not in a motif group
homologous
IL_8C3A_037
IL_95997.1
IL_8BHF_0671/A2/1686:1688,
1/A2/1848:1851
No text annotation
Not in a motif group
IL_8BHF_0681/A2/1694:1721,
1/A2/1841:1842
No text annotation
Not in a motif group
IL_8BHF_0691/A2/1723:1725,
1/A2/1838:1839
No text annotation
Not in a motif group
homologous
IL_8C3A_040
IL_00225.2
IL_8BHF_0701/A2/1732:1737,
1/A2/1792:1797
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7A0S_027
IL_81631.1
IL_8BHF_0711/A2/1737:1738,
1/A2/1790:1792
Minor groove platform
Not in a motif group
geometric
IL_6DLR_003
IL_42622.2
IL_8BHF_0721/A2/1739:1744,
1/A2/1786:1789
No text annotation
Not in a motif group
homologous
IL_8C3A_043
IL_02509.1
IL_8BHF_0731/A2/1745:1749,
1/A2/1781:1785
No text annotation
Not in a motif group
homologous
IL_8C3A_044
IL_05145.2
IL_8BHF_0741/A2/1749:1751,
1/A2/1779:1781
No text annotation
Not in a motif group
geometric
IL_4LFB_006
IL_95997.1
IL_8BHF_0751/A2/1753:1756,
1/A2/1776:1777
Major groove platform
Not in a motif group
geometric
IL_7A0S_073
IL_27635.1
IL_8BHF_0761/A2/1758:1760,
1/A2/1772:1774
No text annotation
Not in a motif group
geometric
IL_4M4O_002
IL_95997.1
IL_8BHF_0771/A2/1814:1816,
1/A2/1823:1824
Single bulged G
Not in a motif group
geometric
IL_4V88_442
IL_00225.2
IL_8BHF_0781/A2/1858:1860,
1/A2/1874:1876
No text annotation
Not in a motif group
homologous
IL_5TBW_046
IL_95997.1
IL_8BHF_0791/A2/1861:1863,
1/A2/1871:1873
No text annotation
Not in a motif group
homologous
IL_8C3A_050
IL_52767.2
IL_8BHF_0801/A2/1905:1909,
1/A2/2067:2071
No text annotation
Not in a motif group
homologous
IL_8C3A_051
IL_89002.2
IL_8BHF_0811/A2/1911:1918,
1/A2/2064:2065
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_7RQB_037
IL_15861.7
IL_8BHF_0821/A2/1918:1920,
1/A2/2063:2064
No text annotation
Not in a motif group
IL_8BHF_0831/A2/1920:1922,
1/A2/2062:2063
No text annotation
Not in a motif group
IL_8BHF_0841/A2/1926:1933,
1/A2/2053:2058
No text annotation
Not in a motif group
geometric
IL_5TBW_051
IL_27086.1
IL_8BHF_0851/A2/1933:1944,
1/A2/2038:2053
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_53762.1
IL_8BHF_0861/A2/1946:1948,
1/A2/2035:2036
Single bulged U
Not in a motif group
homologous
IL_5TBW_053
IL_83039.13
IL_8BHF_0871/A2/1957:1965,
1/A2/2022:2026
No text annotation
Not in a motif group
homologous
IL_8C3A_057
IL_90538.4
IL_8BHF_0891/A2/2001:2005,
1/A2/2014:2016
Major groove platform with extra cWW
Not in a motif group
geometric
IL_5D8H_003
IL_05564.2
IL_8BHF_0901/A2/2083:2085,
1/A2/2275:2276
Single bulged U
Not in a motif group
geometric
IL_4LFB_046
IL_83039.13
IL_8BHF_0911/A2/2293:2295,
1/A2/2345:2348
Isolated cWS basepair
Not in a motif group
homologous
IL_5TBW_057
IL_52767.2
IL_8BHF_0921/A2/2302:2304,
1/A2/2337:2338
No text annotation
Not in a motif group
homologous
IL_8C3A_062
IL_37497.2
IL_8BHF_0931/A2/2305:2312,
1/A2/2332:2336
No text annotation
Not in a motif group
homologous
IL_8C3A_063
IL_70923.2
IL_8BHF_0941/A2/2315:2317,
1/A2/2328:2329
Single bulged A
Not in a motif group
homologous
IL_5TBW_060
IL_37497.2
IL_8BHF_0951/A2/2361:2367,
1/A2/3853:3858
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5TBW_061
IL_76042.2
IL_8BHF_0961/A2/2418:2422,
1/A2/2430:2432
C-loop
Not in a motif group
geometric
IL_7A0S_047
IL_37712.2
IL_8BHF_0971/A2/2449:2453,
1/A2/2512:2517
No text annotation
Not in a motif group
homologous
IL_8C3A_067
IL_89002.2
IL_8BHF_0981/A2/2480:2482,
1/A2/2502:2503
Not an internal loop
Not in a motif group
geometric
IL_4UYK_002
IL_76488.2
IL_8BHF_0991/A2/2485:2487,
1/A2/2497:2499
UG cWW
Not in a motif group
geometric
IL_4LFB_061
IL_95997.1
IL_8BHF_1001/A2/2545:2550,
1/A2/2775:2777
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_1U6B_001
IL_82068.2
IL_8BHF_1011/A2/2552:2553,
1/A2/2771:2773
Single bulged U
Not in a motif group
geometric
IL_2A64_002
IL_83039.13
IL_8BHF_1021/A2/2592:2596,
1/A2/2755:2759
Triple sheared
Not in a motif group
homologous
IL_5TBW_067
IL_56467.8
IL_8BHF_1031/A2/2616:2617,
1/A2/2727:2729
Single bulged C
Not in a motif group
homologous
IL_5TBW_069
IL_61258.12
IL_8BHF_1041/A2/2617:2618,
1/A2/2725:2727
Single stack bend
Not in a motif group
geometric
IL_5TBW_070
IL_76488.2
IL_8BHF_1051/A2/2649:2651,
1/A2/2688:2691
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_4V9F_076
IL_38958.7
IL_8BHF_1061/A2/2654:2656,
1/A2/2684:2685
Single bulged G
Not in a motif group
geometric
IL_3NDB_004
IL_00225.2
IL_8BHF_1071/A2/2659:2665,
1/A2/2675:2681
Kink-turn
Not in a motif group
homologous
IL_5TBW_073
IL_60192.2
IL_8BHF_1081/A2/2707:2708,
1/A2/2713:2715
No text annotation
Not in a motif group
IL_8BHF_1091/A2/2835:2841,
1/A2/3845:3848
No text annotation
Not in a motif group
homologous
IL_5TBW_074
IL_49460.2
IL_8BHF_1101/A2/2847:2849,
1/A2/3837:3839
No text annotation
Not in a motif group
homologous
IL_8C3A_081
IL_54997.7
IL_8BHF_1111/A2/2850:2853,
1/A2/3835:3836
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5TBW_076
IL_50694.2
IL_8BHF_1121/A2/2853:2858,
1/A2/3832:3835
Intercalated tWH
Not in a motif group
geometric
IL_5TBW_077
IL_82842.2
IL_8BHF_1131/A2/2870:2875,
1/A2/2880:2886
No text annotation
Not in a motif group
homologous
IL_8C3A_084
IL_65969.2
IL_8BHF_1141/A2/2892:2894,
1/A2/3605:3607
No text annotation
Not in a motif group
homologous
IL_8C3A_085
IL_95997.1
IL_8BHF_1151/A2/2899:2900,
1/A2/3597:3600
No text annotation
Not in a motif group
homologous
IL_8C3A_086
IL_74125.1
IL_8BHF_1161/A2/3627:3628,
1/A2/3822:3824
No text annotation
Not in a motif group
homologous
IL_8C3A_087
IL_37497.2
IL_8BHF_1171/A2/3655:3660,
1/A2/3672:3679
No text annotation
Not in a motif group
homologous
IL_8C3A_088
IL_64509.1
IL_8BHF_1181/A2/3695:3698,
1/A2/3744:3745
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5TBW_084
IL_88739.1
IL_8BHF_1191/A2/3699:3700,
1/A2/3740:3743
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5TBW_085
IL_16396.2
IL_8BHF_1201/A2/3703:3705,
1/A2/3736:3737
No text annotation
Not in a motif group
homologous
IL_8C3A_091
IL_76488.2
IL_8BHF_1211/A2/3705:3709,
1/A2/3734:3736
No text annotation
Not in a motif group
homologous
IL_8C3A_092
IL_65006.1
IL_8BHF_1221/A2/3710:3716,
1/A2/3727:3733
No text annotation
Not in a motif group
homologous
IL_8C3A_093
IL_36973.6
IL_8BHF_1231/A2/3775:3776,
1/A2/3806:3809
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_089
IL_59677.2
IL_8BHF_1241/A2/3776:3787,
1/A2/3803:3806
No text annotation
Not in a motif group
homologous
IL_5TBW_090
IL_81589.2
IL_8BHF_1251/A2/3890:3893,
1/A2/4549:4551
No text annotation
Not in a motif group
homologous
IL_8C3A_096
IL_63450.2
IL_8BHF_1261/A2/3895:3897,
1/A2/4544:4547
No text annotation
Not in a motif group
homologous
IL_8C3A_097
IL_54678.5
IL_8BHF_1271/A2/3908:3910,
1/A2/4374:4375
Single bulged U
Not in a motif group
homologous
IL_5TBW_093
IL_83039.13
IL_8BHF_1281/A2/3911:3912,
1/A2/4370:4373
Minor groove platform
Not in a motif group
homologous
IL_5TBW_094
IL_42622.2
IL_8BHF_1291/A2/3922:3924,
1/A2/4167:4170
No text annotation
Not in a motif group
homologous
IL_8C3A_100
IL_38958.7
IL_8BHF_1301/A2/3942:3947,
1/A2/4054:4060
No text annotation
Not in a motif group
IL_8BHF_1321/A2/3950:3963,
1/A2/4047:4051
No text annotation
Not in a motif group
IL_8BHF_1341/A2/3965:3971,
1/A2/4029:4045
No text annotation
Not in a motif group
IL_8BHF_1351/A2/4076:4082,
1/A2/4147:4150
No text annotation
Not in a motif group
homologous
IL_8C3A_106
IL_74114.1
IL_8BHF_1361/A2/4089:4094,
1/A2/4101:4106
No text annotation
Not in a motif group
geometric
IL_6O5F_001
IL_04668.1
IL_8BHF_1381/A2/4177:4178,
1/A2/4188:4190
No text annotation
Not in a motif group
homologous
IL_8C3A_107
IL_69996.1
IL_8BHF_1391/A2/4229:4231,
1/A2/4249:4253
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_5TBW_099
IL_38958.7
IL_8BHF_1401/A2/4277:4279,
1/A2/4303:4304
Single bulged A
Not in a motif group
geometric
IL_5WWT_001
IL_37497.2
IL_8BHF_1411/A2/4281:4284,
1/A2/4298:4301
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5TBW_100
IL_30621.2
IL_8BHF_1421/A2/4333:4336,
1/A2/4350:4351
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_8BHF_1431/A2/4386:4387,
1/A2/4428:4430
Major groove platform
Not in a motif group
geometric
IL_5TBW_102
IL_27635.1
IL_8BHF_1441/A2/4387:4389,
1/A2/4426:4428
No text annotation
Not in a motif group
homologous
IL_5TBW_103
IL_95997.1
IL_8BHF_1451/A2/4389:4391,
1/A2/4425:4426
Major groove platform
Not in a motif group
geometric
IL_5TBW_104
IL_76223.2
IL_8BHF_1461/A2/4391:4393,
1/A2/4421:4425
No text annotation
Not in a motif group
homologous
IL_5TBW_105
IL_92788.2
IL_8BHF_1471/A2/4398:4402,
1/A2/4412:4416
No text annotation
Not in a motif group
homologous
IL_8C3A_114
NA
IL_8BHF_1481/A2/4439:4440,
1/A2/4512:4514
No text annotation
Not in a motif group
homologous
IL_8C3A_115
IL_76223.2
IL_8BHF_1491/A2/4442:4444,
1/A2/4506:4510
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5TBW_108
IL_90933.2
IL_8BHF_1501/A2/4444:4445,
1/A2/4503:4506
No text annotation
Not in a motif group
homologous
IL_8C3A_117
IL_71530.2
IL_8BHF_1511/A2/4452:4454,
1/A2/4475:4477
No text annotation
Not in a motif group
homologous
IL_8C3A_118
IL_51629.2
IL_8BHF_1521/A2/4454:4456,
1/A2/4471:4475
No text annotation
Not in a motif group
IL_8BHF_1531/A2/4481:4483,
1/A2/4489:4491
No text annotation
Not in a motif group
homologous
IL_8C3A_120
IL_95997.1
IL_8BHF_1541/A2/4523:4524,
1/A2/4533:4535
Single bulged A
Not in a motif group
geometric
IL_7RQB_101
IL_37497.2
IL_8BHF_1551/A2/4566:4568,
1/A2/4707:4709
No text annotation
Not in a motif group
geometric
IL_3ICQ_003
IL_51629.2
IL_8BHF_1561/A2/4568:4571,
1/A2/4703:4707
Double sheared
Not in a motif group
geometric
IL_5J7L_256
IL_09705.9
IL_8BHF_1571/A2/4576:4578,
1/A2/4604:4606
No text annotation
Not in a motif group
homologous
IL_8C3A_124
IL_95997.1
IL_8BHF_1581/A2/4582:4589,
1/A2/4594:4600
No text annotation
Not in a motif group
homologous
IL_8C3A_125
IL_04346.7
IL_8BHF_1591/A2/4610:4615,
1/A2/4655:4659
No text annotation
Not in a motif group
IL_8BHF_1601/A2/4618:4623,
1/A2/4648:4652
UAA/GAN related
Not in a motif group
homologous
IL_5TBW_118
IL_17136.1
IL_8BHF_1611/A2/4624:4626,
1/A2/4645:4647
Isolated cWH basepair
Not in a motif group
geometric
IL_3R1C_012
IL_51629.2
IL_8BHF_1621/A2/4627:4628,
1/A2/4641:4644
Multiple bulged bases
Not in a motif group
homologous
IL_5TBW_119
IL_71530.2
IL_8BHF_1631/A2/4666:4671,
1/A2/4691:4696
UAA/GAN with extra cWW
Not in a motif group
geometric
IL_5J7L_350
IL_49767.5
IL_8BHF_1641/A2/4725:4729,
1/A2/4939:4942
No text annotation
Not in a motif group
IL_8BHF_1651/A2/4729:4732,
1/A2/4936:4939
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_100
IL_30621.2
IL_8BHF_1661/A2/4742:4752,
1/A2/4850:4859
No text annotation
Not in a motif group
IL_8BHF_1671/A2/4755:4759,
1/A2/4844:4847
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_7A0S_040
IL_30621.2
IL_8BHF_1681/A2/4867:4870,
1/A2/4913:4916
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4K27_002
IL_30621.2
IL_8BHF_1691/A2/4872:4878,
1/A2/4906:4911
No text annotation
Not in a motif group
IL_8BHF_1701/A2/4880:4884,
1/A2/4901:4904
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.1
IL_8BHF_1711/A2/4954:4957,
1/A2/4965:4968
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_129
IL_30621.2
IL_8BHF_1721/A2/4974:4976,
1/A2/5039:5041
No text annotation
Not in a motif group
geometric
IL_3IVK_002
IL_95997.1
IL_8BHF_1731/A2/4978:4979,
1/A2/5035:5037
Single bulged C
Not in a motif group
geometric
IL_1KUQ_002
IL_61258.12
IL_8BHF_1741/A2/4982:4984,
1/A2/5027:5032
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5TBW_132
IL_90933.2
IL_8BHF_1751/A2/4985:4991,
1/A2/5021:5026
No text annotation
Not in a motif group
IL_8BHF_1761/A2/4994:4996,
1/A2/5017:5018
Single bulged C
Not in a motif group
geometric
IL_6ZDP_001
IL_61258.12
IL_8BHF_1771/A2/4996:4999,
1/A2/5014:5017
No text annotation
Not in a motif group
homologous
IL_8C3A_141
IL_09705.9
IL_8BHF_1781/A3/23:25,
1/A3/649:651
No text annotation
Not in a motif group
geometric
IL_4M4O_001
IL_95997.1
IL_8BHF_1791/A3/34:36,
1/A3/519:521
UC cWW
Not in a motif group
homologous
IL_4V88_385
IL_51629.2
IL_8BHF_1801/A3/37:40,
1/A3/514:518
Double sheared
Not in a motif group
geometric
IL_4WF9_016
IL_09705.9
IL_8BHF_1811/A3/41:47,
1/A3/479:481
No text annotation
Not in a motif group
homologous
IL_4V88_387
IL_33912.1
IL_8BHF_1821/A3/49:51,
1/A3/476:477
Minor groove platform
Not in a motif group
homologous
IL_4V88_388
IL_93353.1
IL_8BHF_1831/A3/57:62,
1/A3/86:88
No text annotation
Not in a motif group
homologous
IL_4V88_389
IL_95004.1
IL_8BHF_1841/A3/62:68,
1/A3/81:86
No text annotation
Not in a motif group
IL_8BHF_1851/A3/108:110,
1/A3/351:353
No text annotation
Not in a motif group
geometric
IL_1T0E_002
IL_95997.1
IL_8BHF_1861/A3/110:112,
1/A3/349:351
No text annotation
Not in a motif group
geometric
IL_4WF9_042
IL_95997.1
IL_8BHF_1871/A3/112:115,
1/A3/348:349
Multiple bulged bases
Not in a motif group
geometric
IL_4V88_392
IL_44546.1
IL_8BHF_1881/A3/116:121,
1/A3/343:347
No text annotation
Not in a motif group
homologous
IL_4V88_393
IL_64181.2
IL_8BHF_1891/A3/130:144,
1/A3/175:182
No text annotation
Not in a motif group
IL_8BHF_1901/A3/145:151,
1/A3/167:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4V88_394
IL_80604.2
IL_8BHF_1911/A3/152:154,
1/A3/164:166
Isolated cWH basepair
Not in a motif group
geometric
IL_4KQ0_004
IL_51629.2
IL_8BHF_1921/A3/188:192,
1/A3/207:211
Triple sheared
Not in a motif group
geometric
IL_4WFL_001
IL_56467.8
IL_8BHF_1941/A3/216:219,
1/A3/302:309
No text annotation
Not in a motif group