6SGC Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6SGC_001 | 1/23/13:22 | No text annotation Not in a motif group | homologous HL_6PMO_003 NA | |
| HL_6SGC_002 | 1/23/30:40 | No text annotation Not in a motif group | homologous HL_1FIR_002 NA | |
| HL_6SGC_003 | 1/23/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
| HL_6SGC_004 | 1/33/13:22 | No text annotation Not in a motif group | homologous HL_6PMO_003 NA | |
| HL_6SGC_005 | 1/33/30:40 | No text annotation Not in a motif group | homologous HL_1FIR_002 NA | |
| HL_6SGC_006 | 1/33/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
| HL_6SGC_007 | 1/54/37:44 | No text annotation Not in a motif group | homologous HL_5TBW_001 HL_06192.2 | |
| HL_6SGC_008 | 1/54/68:73 | No text annotation Not in a motif group | homologous HL_8C3A_002 HL_02862.2 | |
| HL_6SGC_009 | 1/54/89:95 | No text annotation Not in a motif group | homologous HL_8C3A_003 HL_67216.7 | |
| HL_6SGC_010 | 1/54/131:137 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_6SGC_011 | 1/54/204:211 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_6SGC_012 | 1/54/222:226 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_6SGC_013 | 1/54/230:238 | No text annotation Not in a motif group | homologous HL_5TBW_007 HL_08002.8 | |
| HL_6SGC_014 | 1/54/289:298 | No text annotation Not in a motif group | homologous HL_5TBW_008 HL_71554.2 | |
| HL_6SGC_015 | 1/54/314:323 | No text annotation Not in a motif group | homologous HL_8C3A_009 HL_12078.2 | |
| HL_6SGC_016 | 1/54/368:373 | No text annotation Not in a motif group | homologous HL_8C3A_010 HL_42097.1 | |
| HL_6SGC_017 | 1/54/393:398 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.1 | |
| HL_6SGC_018 | 1/54/759:904 | No text annotation Not in a motif group | ||
| HL_6SGC_019 | 1/54/962:970 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_6SGC_020 | 1/54/1177:1184 | No text annotation Not in a motif group | ||
| HL_6SGC_021 | 1/54/1317:1326 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_6SGC_022 | 1/54/1363:1374 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_6SGC_023 | 1/54/1389:1394 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_6SGC_024 | 1/54/1436:1448 | No text annotation Not in a motif group | geometric HL_1ZCI_002 HL_12078.2 | |
| HL_6SGC_025 | 1/54/1479:1486 | Other HL Not in a motif group | geometric HL_5J7L_200 HL_34168.2 | |
| HL_6SGC_026 | 1/54/1561:1566 | GNRA Not in a motif group | homologous HL_5TBW_019 HL_42097.1 | |
| HL_6SGC_027 | 1/54/1593:1602 | No text annotation Not in a motif group | homologous HL_5TBW_020 HL_39334.6 | |
| HL_6SGC_028 | 1/54/1627:1635 | No text annotation Not in a motif group | homologous HL_5TBW_021 HL_33817.1 | |
| HL_6SGC_029 | 1/54/1675:1680 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_6SGC_030 | 1/54/1761:1771 | No text annotation Not in a motif group | ||
| HL_6SGC_031 | 1/54/1816:1823 | No text annotation Not in a motif group | geometric HL_3R4F_001 HL_71554.2 | |
| HL_6SGC_032 | 1/54/1864:1870 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_42097.1 | |
| HL_6SGC_033 | 1/54/1886:1893 | No text annotation Not in a motif group | homologous HL_5TBW_026 HL_64430.2 | |
| HL_6SGC_034 | 1/54/1973:1993 | No text annotation Not in a motif group | ||
| HL_6SGC_035 | 1/54/2006:2013 | No text annotation Not in a motif group | geometric HL_6PRV_002 HL_84085.2 | |
| HL_6SGC_036 | 1/54/2087:2270 | No text annotation Not in a motif group | ||
| HL_6SGC_037 | 1/54/2317:2322 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_6SGC_038 | 1/54/2376:2384 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5TBW_031 HL_89380.2 | |
| HL_6SGC_039 | 1/54/2420:2426 | No text annotation Not in a motif group | homologous HL_5TBW_032 HL_46680.1 | |
| HL_6SGC_040 | 1/54/2458:2463 | Other HL Not in a motif group | homologous HL_5TBW_033 HL_76539.2 | |
| HL_6SGC_041 | 1/54/2487:2491 | No text annotation Not in a motif group | ||
| HL_6SGC_042 | 1/54/2523:2532 | No text annotation Not in a motif group | homologous HL_5TBW_035 HL_69023.2 | |
| HL_6SGC_043 | 1/54/2561:2566 | GNRA Not in a motif group | geometric HL_5J7L_152 HL_42097.1 | |
| HL_6SGC_044 | 1/54/2578:2583 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_42097.1 | |
| HL_6SGC_045 | 1/54/2624:2632 | No text annotation Not in a motif group | homologous HL_8C3A_037 HL_60812.1 | |
| HL_6SGC_046 | 1/54/2664:2670 | Other HL Not in a motif group | geometric HL_4V9F_039 HL_27930.1 | |
| HL_6SGC_047 | 1/54/2705:2710 | No text annotation Not in a motif group | geometric HL_4V9F_003 HL_52841.1 | |
| HL_6SGC_048 | 1/54/2738:2742 | No text annotation Not in a motif group | homologous HL_8C3A_040 HL_49678.1 | |
| HL_6SGC_049 | 1/54/2792:2799 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.2 | |
| HL_6SGC_050 | 1/54/2810:2816 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_6SGC_051 | 1/54/2872:2877 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_6SGC_052 | 1/54/2901:3598 | No text annotation Not in a motif group | ||
| HL_6SGC_053 | 1/54/3614:3618 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_6SGC_054 | 1/54/3639:3649 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.5 | |
| HL_6SGC_055 | 1/54/3668:3674 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_6SGC_056 | 1/54/3724:3729 | Other HL Not in a motif group | homologous HL_5TBW_048 HL_42097.1 | |
| HL_6SGC_057 | 1/54/3757:3767 | No text annotation Not in a motif group | homologous HL_5TBW_049 HL_71924.2 | |
| HL_6SGC_058 | 1/54/3796:3804 | No text annotation Not in a motif group | homologous HL_8C3A_050 HL_51824.1 | |
| HL_6SGC_059 | 1/54/3873:3882 | No text annotation Not in a motif group | homologous HL_5TBW_051 HL_90642.6 | |
| HL_6SGC_060 | 1/54/3976:4035 | No text annotation Not in a motif group | ||
| HL_6SGC_061 | 1/54/4095:4113 | No text annotation Not in a motif group | ||
| HL_6SGC_062 | 1/54/4137:4147 | No text annotation Not in a motif group | ||
| HL_6SGC_063 | 1/54/4193:4201 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_6SGC_064 | 1/54/4210:4222 | No text annotation Not in a motif group | homologous HL_8C3A_056 HL_19870.6 | |
| HL_6SGC_065 | 1/54/4250:4258 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_6SGC_066 | 1/54/4270:4277 | No text annotation Not in a motif group | homologous HL_5TBW_057 HL_12078.2 | |
| HL_6SGC_067 | 1/54/4301:4309 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_6SGC_068 | 1/54/4321:4326 | GNRA Not in a motif group | homologous HL_5TBW_059 HL_42097.1 | |
| HL_6SGC_069 | 1/54/4352:4362 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_6SGC_070 | 1/54/4417:4425 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_6SGC_071 | 1/54/4474:4481 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_6SGC_072 | 1/54/4497:4503 | No text annotation Not in a motif group | geometric HL_5TBW_063 HL_43656.2 | |
| HL_6SGC_073 | 1/54/4540:4545 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.1 | |
| HL_6SGC_074 | 1/54/4603:4608 | GNRA Not in a motif group | homologous HL_5TBW_065 HL_42097.1 | |
| HL_6SGC_075 | 1/54/4646:4651 | No text annotation Not in a motif group | homologous HL_8C3A_067 HL_46680.1 | |
| HL_6SGC_076 | 1/54/4688:4702 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_6SGC_077 | 1/54/4775:4860 | No text annotation Not in a motif group | ||
| HL_6SGC_078 | 1/54/4906:4915 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_6SGC_079 | 1/54/4975:4983 | No text annotation Not in a motif group | geometric HL_5J7L_201 HL_27930.1 | |
| HL_6SGC_080 | 1/54/5021:5028 | No text annotation Not in a motif group | homologous HL_8C3A_072 HL_53837.1 | |
| HL_6SGC_081 | 1/74/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_6SGC_082 | 1/74/86:91 | GNRA Not in a motif group | homologous HL_5TBW_186 HL_42097.1 | |
| HL_6SGC_083 | 1/84/47:56 | No text annotation Not in a motif group | geometric HL_7RQB_001 HL_99167.1 | |
| HL_6SGC_085 | 1/84/107:112 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_6SGC_086 | 1/84/121:129 | No text annotation Not in a motif group | ||
| HL_6SGC_087 | 1/A1/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6SGC_088 | 1/A1/69:80 | No text annotation Not in a motif group | geometric HL_3SKL_006 HL_47100.1 | |
| HL_6SGC_089 | 1/A1/156:162 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_6SGC_090 | 1/A1/196:203 | No text annotation Not in a motif group | geometric HL_5D8H_002 HL_84085.2 | |
| HL_6SGC_091 | 1/A1/288:295 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_6SGC_093 | 1/A1/377:387 | No text annotation Not in a motif group | ||
| HL_6SGC_094 | 1/A1/416:421 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6SGC_095 | 1/A1/441:452 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6SGC_096 | 1/A1/462:467 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_6SGC_097 | 1/A1/498:504 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6SGC_098 | 1/A1/539:544 | Other HL Not in a motif group | geometric HL_5J7L_190 HL_87030.2 | |
| HL_6SGC_099 | 1/A1/569:581 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 | |
| HL_6SGC_100 | 1/A1/618:623 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_6SGC_102 | 1/A1/820:828 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_6SGC_104 | 1/A1/884:902 | No text annotation Not in a motif group | ||
| HL_6SGC_105 | 1/A1/957:966 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_6SGC_106 | 1/A1/994:999 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6SGC_107 | 1/A1/1054:1064 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_6SGC_108 | 1/A1/1114:1119 | No text annotation Not in a motif group | geometric HL_5TBW_044 HL_09829.1 | |
| HL_6SGC_109 | 1/A1/1141:1146 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_6SGC_110 | 1/A1/1178:1183 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_6SGC_111 | 1/A1/1245:1254 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_6SGC_112 | 1/A1/1295:1304 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_6SGC_113 | 1/A1/1353:1358 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_6SGC_114 | 1/A1/1366:1373 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_6SGC_116 | 1/A1/1460:1466 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_6SGC_117 | 1/A1/1565:1570 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_6SGC_118 | 1/A1/1614:1625 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_6SGC_119 | 1/A1/1658:1666 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_6SGC_121 | 1/A1/1847:1852 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6SGC_084 | No text annotation | ||
| HL_6SGC_092 | No text annotation | ||
| HL_6SGC_101 | No text annotation | ||
| HL_6SGC_103 | No text annotation | ||
| HL_6SGC_115 | No text annotation | ||
| HL_6SGC_120 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6SGC_001 | 1/23/5:7, 1/23/66:68 | No text annotation Not in a motif group | homologous IL_4WSM_380 NA | |
| IL_6SGC_002 | 1/33/5:7, 1/33/66:68 | No text annotation Not in a motif group | homologous IL_4WSM_380 NA | |
| IL_6SGC_003 | 1/54/6:7, 1/84/149:151 | No text annotation Not in a motif group | homologous IL_8C3A_002 IL_61258.12 | |
| IL_6SGC_004 | 1/54/12:14, 1/84/143:144 | No text annotation Not in a motif group | homologous IL_8C3A_003 IL_83039.13 | |
| IL_6SGC_005 | 1/54/16:18, 1/84/139:141 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_6SGC_006 | 1/54/26:27, 1/54/55:57 | Single stack bend Not in a motif group | homologous IL_5TBW_004 IL_76488.2 | |
| IL_6SGC_007 | 1/54/30:37, 1/54/44:52 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_35728.2 | |
| IL_6SGC_008 | 1/54/81:88, 1/54/96:102 | No text annotation Not in a motif group | homologous IL_8C3A_006 IL_88613.1 | |
| IL_6SGC_009 | 1/54/118:121, 1/54/152:153 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_003 IL_69996.1 | |
| IL_6SGC_010 | 1/54/121:122, 1/54/147:152 | No text annotation Not in a motif group | homologous IL_5TBW_007 IL_19724.2 | |
| IL_6SGC_011 | 1/54/125:126, 1/54/142:144 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_6SGC_012 | 1/54/168:173, 1/54/263:267 | No text annotation Not in a motif group | ||
| IL_6SGC_013 | 1/54/180:189, 1/54/252:256 | No text annotation Not in a motif group | ||
| IL_6SGC_014 | 1/54/195:196, 1/54/244:246 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_6SGC_015 | 1/54/199:201, 1/54/214:215 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_6SGC_017 | 1/54/348:350, 1/84/25:26 | No text annotation Not in a motif group | homologous IL_8C3A_014 IL_37497.2 | |
| IL_6SGC_018 | 1/54/387:390, 1/54/401:414 | No text annotation Not in a motif group | homologous IL_5TBW_014 IL_60992.6 | |
| IL_6SGC_019 | 1/54/415:421, 1/84/13:19 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_5TBW_015 IL_66414.6 | |
| IL_6SGC_020 | 1/54/443:446, 1/54/1300:1304 | No text annotation Not in a motif group | geometric IL_4PHY_003 IL_23164.1 | |
| IL_6SGC_021 | 1/54/448:450, 1/54/1297:1298 | No text annotation Not in a motif group | ||
| IL_6SGC_022 | 1/54/459:460, 1/54/695:697 | Single bulged C Not in a motif group | geometric IL_1DQF_001 IL_61258.12 | |
| IL_6SGC_023 | 1/54/462:464, 1/54/691:693 | No text annotation Not in a motif group | geometric IL_3DIL_006 IL_95997.1 | |
| IL_6SGC_024 | 1/54/466:472, 1/54/682:689 | No text annotation Not in a motif group | ||
| IL_6SGC_025 | 1/54/481:482, 1/54/672:673 | Single bulged C Not in a motif group | geometric IL_3HHN_003 IL_61258.12 | |
| IL_6SGC_026 | 1/54/482:485, 1/54/671:672 | Multiple bulged bases Not in a motif group | geometric IL_6JXM_001 IL_69996.1 | |
| IL_6SGC_027 | 1/54/487:488, 1/54/665:669 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_003 IL_69996.1 | |
| IL_6SGC_028 | 1/54/491:493, 1/54/661:662 | No text annotation Not in a motif group | ||
| IL_6SGC_029 | 1/54/497:499, 1/54/656:657 | No text annotation Not in a motif group | ||
| IL_6SGC_030 | 1/54/508:510, 1/54/649:650 | Single bulged A Not in a motif group | geometric IL_6WPI_001 IL_37497.2 | |
| IL_6SGC_031 | 1/54/520:523, 1/54/638:641 | No text annotation Not in a motif group | ||
| IL_6SGC_032 | 1/54/709:710, 1/54/1286:1288 | Single bulged G Not in a motif group | geometric IL_4LFB_036 IL_00225.2 | |
| IL_6SGC_033 | 1/54/723:724, 1/54/942:945 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
| IL_6SGC_034 | 1/54/727:731, 1/54/938:939 | No text annotation Not in a motif group | ||
| IL_6SGC_035 | 1/54/732:735, 1/54/928:937 | No text annotation Not in a motif group | ||
| IL_6SGC_036 | 1/54/737:739, 1/54/923:926 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_6SGC_037 | 1/54/745:752, 1/54/911:919 | No text annotation Not in a motif group | geometric IL_5TBW_020 IL_07703.1 | |
| IL_6SGC_038 | 1/54/980:982, 1/54/1273:1275 | No text annotation Not in a motif group | geometric IL_2ZNI_001 IL_51629.2 | |
| IL_6SGC_039 | 1/54/1074:1076, 1/54/1234:1236 | No text annotation Not in a motif group | geometric IL_3D0U_006 IL_95997.1 | |
| IL_6SGC_040 | 1/54/1077:1080, 1/54/1219:1233 | No text annotation Not in a motif group | ||
| IL_6SGC_041 | 1/54/1082:1084, 1/54/1213:1217 | Isolated near basepair Not in a motif group | geometric IL_7A0S_030 IL_52767.2 | |
| IL_6SGC_042 | 1/54/1086:1087, 1/54/1209:1211 | Single bulged C Not in a motif group | geometric IL_3W3S_001 IL_61258.12 | |
| IL_6SGC_043 | 1/54/1097:1098, 1/54/1197:1199 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_76488.2 | |
| IL_6SGC_044 | 1/54/1099:1168, 1/54/1193:1196 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_6SGC_045 | 1/54/1173:1175, 1/54/1186:1188 | Isolated cWH basepair Not in a motif group | geometric IL_3W3S_003 IL_51629.2 | |
| IL_6SGC_046 | 1/54/1357:1360, 1/54/1379:1382 | No text annotation Not in a motif group | ||
| IL_6SGC_047 | 1/54/1360:1361, 1/54/1376:1379 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1NBS_009 IL_69996.1 | |
| IL_6SGC_048 | 1/54/1425:1429, 1/54/1455:1460 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_6SGC_049 | 1/54/1431:1434, 1/54/1450:1453 | Double sheared Not in a motif group | geometric IL_4KZD_002 IL_09705.9 | |
| IL_6SGC_050 | 1/54/1467:1468, 1/54/1496:1498 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.2 | |
| IL_6SGC_051 | 1/54/1474:1476, 1/54/1489:1490 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_76488.2 | |
| IL_6SGC_052 | 1/54/1520:1522, 1/54/1655:1657 | No text annotation Not in a motif group | geometric IL_5TBW_027 IL_95997.1 | |
| IL_6SGC_053 | 1/54/1522:1526, 1/54/1648:1655 | No text annotation Not in a motif group | homologous IL_5TBW_028 IL_17470.6 | |
| IL_6SGC_054 | 1/54/1550:1551, 1/54/1576:1578 | Single bulged G Not in a motif group | geometric IL_4V9F_026 IL_00225.2 | |
| IL_6SGC_055 | 1/54/1551:1555, 1/54/1572:1576 | No text annotation Not in a motif group | homologous IL_8C3A_033 IL_56467.8 | |
| IL_6SGC_056 | 1/54/1586:1589, 1/54/1605:1607 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_6SGC_057 | 1/54/1590:1592, 1/54/1603:1604 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_6SGC_058 | 1/54/1624:1626, 1/54/1636:1640 | No text annotation Not in a motif group | homologous IL_8C3A_036 IL_90991.6 | |
| IL_6SGC_059 | 1/54/1671:1673, 1/54/1682:1684 | No text annotation Not in a motif group | homologous IL_5TBW_034 IL_95997.1 | |
| IL_6SGC_060 | 1/54/1686:1688, 1/54/1848:1851 | No text annotation Not in a motif group | ||
| IL_6SGC_061 | 1/54/1694:1721, 1/54/1841:1842 | No text annotation Not in a motif group | ||
| IL_6SGC_062 | 1/54/1723:1725, 1/54/1838:1839 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_6SGC_063 | 1/54/1732:1737, 1/54/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_6SGC_064 | 1/54/1737:1738, 1/54/1790:1792 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_42622.2 | |
| IL_6SGC_065 | 1/54/1739:1744, 1/54/1786:1789 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_02509.1 | |
| IL_6SGC_066 | 1/54/1746:1749, 1/54/1781:1784 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_041 IL_30621.2 | |
| IL_6SGC_067 | 1/54/1749:1751, 1/54/1779:1781 | No text annotation Not in a motif group | geometric IL_5TBW_127 IL_95997.1 | |
| IL_6SGC_068 | 1/54/1753:1756, 1/54/1776:1777 | No text annotation Not in a motif group | ||
| IL_6SGC_069 | 1/54/1814:1816, 1/54/1823:1824 | Single bulged A Not in a motif group | homologous IL_5TBW_045 IL_37497.2 | |
| IL_6SGC_070 | 1/54/1858:1860, 1/54/1874:1876 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_6SGC_071 | 1/54/1861:1863, 1/54/1871:1873 | No text annotation Not in a motif group | homologous IL_8C3A_050 IL_52767.2 | |
| IL_6SGC_072 | 1/54/1905:1909, 1/54/2067:2071 | UAA/GAN Not in a motif group | homologous IL_5TBW_048 IL_89002.2 | |
| IL_6SGC_073 | 1/54/1911:1918, 1/54/2064:2065 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 IL_15861.7 | |
| IL_6SGC_074 | 1/54/1918:1920, 1/54/2063:2064 | No text annotation Not in a motif group | ||
| IL_6SGC_075 | 1/54/1920:1922, 1/54/2062:2063 | No text annotation Not in a motif group | ||
| IL_6SGC_076 | 1/54/1926:1933, 1/54/2053:2058 | No text annotation Not in a motif group | homologous IL_5TBW_051 IL_27086.1 | |
| IL_6SGC_077 | 1/54/1933:1944, 1/54/2038:2053 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_6SGC_078 | 1/54/1946:1948, 1/54/2035:2036 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.13 | |
| IL_6SGC_079 | 1/54/1957:1965, 1/54/2022:2026 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.4 | |
| IL_6SGC_080 | 1/54/2001:2006, 1/54/2013:2016 | No text annotation Not in a motif group | ||
| IL_6SGC_081 | 1/54/2083:2085, 1/54/2272:2273 | Single bulged U Not in a motif group | geometric IL_6CZR_156 IL_83039.13 | |
| IL_6SGC_082 | 1/54/2290:2292, 1/54/2342:2345 | Isolated cWS basepair Not in a motif group | homologous IL_5TBW_057 IL_52767.2 | |
| IL_6SGC_083 | 1/54/2299:2301, 1/54/2334:2335 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_6SGC_084 | 1/54/2302:2309, 1/54/2329:2333 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_6SGC_085 | 1/54/2312:2314, 1/54/2325:2326 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_6SGC_086 | 1/54/2358:2364, 1/54/3858:3863 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_061 IL_76042.2 | |
| IL_6SGC_087 | 1/54/2415:2419, 1/54/2427:2429 | C-loop Not in a motif group | geometric IL_7A0S_047 IL_37712.2 | |
| IL_6SGC_088 | 1/54/2446:2450, 1/54/2509:2514 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_6SGC_089 | 1/54/2477:2479, 1/54/2499:2500 | Single stack bend Not in a motif group | geometric IL_4V83_236 IL_76488.2 | |
| IL_6SGC_090 | 1/54/2542:2547, 1/54/2772:2774 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4WF9_041 IL_82068.2 | |
| IL_6SGC_091 | 1/54/2549:2550, 1/54/2768:2770 | Single bulged U Not in a motif group | geometric IL_2A64_002 IL_83039.13 | |
| IL_6SGC_092 | 1/54/2589:2593, 1/54/2752:2756 | Triple sheared Not in a motif group | homologous IL_5TBW_067 IL_56467.8 | |
| IL_6SGC_093 | 1/54/2613:2614, 1/54/2724:2726 | Single bulged C Not in a motif group | homologous IL_5TBW_069 IL_61258.12 | |
| IL_6SGC_094 | 1/54/2614:2615, 1/54/2722:2724 | Single stack bend Not in a motif group | geometric IL_5TBW_070 IL_76488.2 | |
| IL_6SGC_095 | 1/54/2646:2648, 1/54/2685:2688 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4V9F_076 IL_38958.7 | |
| IL_6SGC_096 | 1/54/2651:2653, 1/54/2681:2682 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_00225.2 | |
| IL_6SGC_097 | 1/54/2656:2662, 1/54/2672:2678 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_6SGC_098 | 1/54/2704:2705, 1/54/2710:2712 | No text annotation Not in a motif group | ||
| IL_6SGC_099 | 1/54/2832:2838, 1/54/3850:3853 | No text annotation Not in a motif group | homologous IL_5TBW_074 IL_49460.2 | |
| IL_6SGC_100 | 1/54/2844:2846, 1/54/3842:3844 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_6SGC_101 | 1/54/2847:2850, 1/54/3840:3841 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5TBW_076 IL_50694.2 | |
| IL_6SGC_102 | 1/54/2850:2855, 1/54/3837:3840 | Intercalated tWH Not in a motif group | geometric IL_4V9F_062 IL_82842.2 | |
| IL_6SGC_103 | 1/54/2867:2872, 1/54/2877:2883 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_4V9F_063 IL_65969.2 | |
| IL_6SGC_104 | 1/54/2889:2891, 1/54/3610:3612 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_6SGC_105 | 1/54/2896:2897, 1/54/3602:3605 | No text annotation Not in a motif group | homologous IL_8C3A_086 IL_74125.1 | |
| IL_6SGC_106 | 1/54/3632:3633, 1/54/3827:3829 | Single bulged A Not in a motif group | homologous IL_5TBW_082 IL_37497.2 | |
| IL_6SGC_107 | 1/54/3660:3665, 1/54/3677:3684 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_6SGC_108 | 1/54/3700:3703, 1/54/3749:3750 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_6SGC_109 | 1/54/3704:3705, 1/54/3745:3748 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_085 IL_16396.2 | |
| IL_6SGC_110 | 1/54/3708:3710, 1/54/3741:3742 | No text annotation Not in a motif group | homologous IL_8C3A_091 IL_76488.2 | |
| IL_6SGC_111 | 1/54/3710:3714, 1/54/3739:3741 | No text annotation Not in a motif group | homologous IL_8C3A_092 IL_65006.1 | |
| IL_6SGC_112 | 1/54/3715:3721, 1/54/3732:3738 | No text annotation Not in a motif group | homologous IL_8C3A_093 IL_36973.6 | |
| IL_6SGC_113 | 1/54/3780:3781, 1/54/3811:3814 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_089 IL_59677.2 | |
| IL_6SGC_114 | 1/54/3781:3792, 1/54/3808:3811 | No text annotation Not in a motif group | homologous IL_5TBW_090 IL_81589.2 | |
| IL_6SGC_115 | 1/54/3895:3898, 1/54/4563:4565 | Major groove platform with extra pair Not in a motif group | homologous IL_5TBW_091 IL_63450.2 | |
| IL_6SGC_116 | 1/54/3900:3902, 1/54/4558:4561 | No text annotation Not in a motif group | homologous IL_8C3A_097 IL_54678.5 | |
| IL_6SGC_117 | 1/54/3913:3915, 1/54/4388:4389 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.13 | |
| IL_6SGC_118 | 1/54/3916:3917, 1/54/4384:4387 | Minor groove platform Not in a motif group | homologous IL_5TBW_094 IL_42622.2 | |
| IL_6SGC_119 | 1/54/3927:3929, 1/54/4181:4184 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_6SGC_120 | 1/54/3947:3952, 1/54/4060:4066 | No text annotation Not in a motif group | ||
| IL_6SGC_121 | 1/54/3955:3970, 1/54/4051:4057 | No text annotation Not in a motif group | ||
| IL_6SGC_122 | 1/54/3970:3974, 1/54/4037:4051 | No text annotation Not in a motif group | ||
| IL_6SGC_123 | 1/54/4082:4088, 1/54/4161:4164 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_6SGC_124 | 1/54/4191:4192, 1/54/4202:4204 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.2 | |
| IL_6SGC_125 | 1/54/4243:4245, 1/54/4263:4267 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_5TBW_099 IL_38958.7 | |
| IL_6SGC_126 | 1/54/4291:4293, 1/54/4317:4318 | Single bulged A Not in a motif group | geometric IL_5WWT_001 IL_37497.2 | |
| IL_6SGC_127 | 1/54/4295:4298, 1/54/4312:4315 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5TBW_100 IL_30621.2 | |
| IL_6SGC_128 | 1/54/4347:4350, 1/54/4364:4365 | Single stack bend Not in a motif group | geometric IL_4V9F_081 IL_76488.2 | |
| IL_6SGC_129 | 1/54/4400:4401, 1/54/4442:4444 | Major groove platform Not in a motif group | geometric IL_5TBW_102 IL_27635.1 | |
| IL_6SGC_130 | 1/54/4401:4403, 1/54/4440:4442 | No text annotation Not in a motif group | homologous IL_5TBW_103 IL_95997.1 | |
| IL_6SGC_131 | 1/54/4403:4405, 1/54/4439:4440 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_6SGC_132 | 1/54/4405:4407, 1/54/4435:4439 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_92788.2 | |
| IL_6SGC_133 | 1/54/4412:4416, 1/54/4426:4430 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_6SGC_134 | 1/54/4453:4454, 1/54/4526:4528 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.2 | |
| IL_6SGC_135 | 1/54/4456:4458, 1/54/4520:4524 | No text annotation Not in a motif group | homologous IL_8C3A_116 IL_90933.2 | |
| IL_6SGC_136 | 1/54/4458:4459, 1/54/4517:4520 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_109 IL_71530.2 | |
| IL_6SGC_137 | 1/54/4466:4468, 1/54/4489:4491 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_6SGC_138 | 1/54/4468:4470, 1/54/4485:4489 | No text annotation Not in a motif group | ||
| IL_6SGC_139 | 1/54/4495:4497, 1/54/4503:4505 | No text annotation Not in a motif group | homologous IL_5TBW_112 IL_95997.1 | |
| IL_6SGC_140 | 1/54/4537:4538, 1/54/4547:4549 | Single bulged A Not in a motif group | geometric IL_7RQB_101 IL_37497.2 | |
| IL_6SGC_141 | 1/54/4580:4582, 1/54/4721:4723 | No text annotation Not in a motif group | geometric IL_3ICQ_003 IL_51629.2 | |
| IL_6SGC_142 | 1/54/4582:4585, 1/54/4717:4721 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.9 | |
| IL_6SGC_143 | 1/54/4590:4592, 1/54/4618:4620 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_6SGC_144 | 1/54/4596:4603, 1/54/4608:4614 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5TBW_116 IL_04346.7 | |
| IL_6SGC_145 | 1/54/4624:4629, 1/54/4669:4673 | No text annotation Not in a motif group | ||
| IL_6SGC_146 | 1/54/4632:4637, 1/54/4662:4666 | UAA/GAN related Not in a motif group | homologous IL_5TBW_118 IL_17136.1 | |
| IL_6SGC_147 | 1/54/4638:4640, 1/54/4659:4661 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_018 IL_51629.2 | |
| IL_6SGC_148 | 1/54/4641:4642, 1/54/4655:4658 | Multiple bulged bases Not in a motif group | homologous IL_5TBW_119 IL_71530.2 | |
| IL_6SGC_149 | 1/54/4680:4685, 1/54/4705:4710 | UAA/GAN with extra cWW Not in a motif group | geometric IL_5J7L_350 IL_49767.5 | |
| IL_6SGC_150 | 1/54/4739:4743, 1/54/4957:4960 | No text annotation Not in a motif group | ||
| IL_6SGC_151 | 1/54/4743:4746, 1/54/4954:4957 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5J7L_283 IL_30621.2 | |
| IL_6SGC_152 | 1/54/4756:4766, 1/54/4868:4877 | No text annotation Not in a motif group | ||
| IL_6SGC_153 | 1/54/4769:4773, 1/54/4862:4865 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_7A0S_040 IL_30621.2 | |
| IL_6SGC_154 | 1/54/4885:4888, 1/54/4931:4934 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_003 IL_30621.2 | |
| IL_6SGC_155 | 1/54/4890:4896, 1/54/4924:4929 | No text annotation Not in a motif group | ||
| IL_6SGC_156 | 1/54/4898:4902, 1/54/4919:4922 | No text annotation Not in a motif group | ||
| IL_6SGC_157 | 1/54/4972:4975, 1/54/4983:4986 | No text annotation Not in a motif group | homologous IL_8C3A_135 IL_30621.2 | |
| IL_6SGC_158 | 1/54/4992:4994, 1/54/5057:5059 | No text annotation Not in a motif group | geometric IL_3D0U_006 IL_95997.1 | |
| IL_6SGC_159 | 1/54/4996:4997, 1/54/5053:5055 | Single bulged C Not in a motif group | geometric IL_1KUQ_002 IL_61258.12 | |
| IL_6SGC_160 | 1/54/5000:5002, 1/54/5045:5050 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_132 IL_90933.2 | |
| IL_6SGC_161 | 1/54/5003:5009, 1/54/5039:5044 | No text annotation Not in a motif group | ||
| IL_6SGC_162 | 1/54/5012:5014, 1/54/5035:5036 | Single bulged C Not in a motif group | geometric IL_6ZDP_001 IL_61258.12 | |
| IL_6SGC_163 | 1/54/5014:5017, 1/54/5032:5035 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_6SGC_164 | 1/74/15:16, 1/74/62:64 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_6SGC_165 | 1/74/21:27, 1/74/52:57 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_6SGC_166 | 1/74/28:29, 1/74/48:51 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_6SGC_167 | 1/74/32:36, 1/74/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 IL_58103.6 | |
| IL_6SGC_168 | 1/74/71:78, 1/74/98:104 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7A0S_007 IL_04346.7 | |
| IL_6SGC_169 | 1/74/79:81, 1/74/95:97 | No text annotation Not in a motif group | geometric IL_5J7L_257 IL_95997.1 | |
| IL_6SGC_170 | 1/74/82:85, 1/74/92:94 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_6SGC_171 | 1/84/64:66, 1/84/92:95 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5TBW_145 IL_82068.2 | |
| IL_6SGC_172 | 1/A1/23:25, 1/A1/649:651 | No text annotation Not in a motif group | geometric IL_3MEI_002 IL_95997.1 | |
| IL_6SGC_173 | 1/A1/34:36, 1/A1/519:521 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_6SGC_174 | 1/A1/37:40, 1/A1/514:518 | Double sheared Not in a motif group | geometric IL_4WF9_016 IL_09705.9 | |
| IL_6SGC_175 | 1/A1/41:47, 1/A1/479:481 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_6SGC_176 | 1/A1/49:51, 1/A1/476:477 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6SGC_177 | 1/A1/57:62, 1/A1/86:88 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6SGC_178 | 1/A1/63:68, 1/A1/81:85 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_6SGC_179 | 1/A1/108:110, 1/A1/351:353 | UU cWW Not in a motif group | geometric IL_4TS2_004 IL_95997.1 | |
| IL_6SGC_180 | 1/A1/110:112, 1/A1/349:351 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_6SGC_181 | 1/A1/112:115, 1/A1/348:349 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_6SGC_182 | 1/A1/116:121, 1/A1/343:347 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6SGC_184 | 1/A1/145:151, 1/A1/167:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_6SGC_185 | 1/A1/152:154, 1/A1/164:166 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_6SGC_186 | 1/A1/188:192, 1/A1/207:211 | Triple sheared Not in a motif group | geometric IL_4WFL_001 IL_56467.8 | |
| IL_6SGC_187 | 1/A1/216:219, 1/A1/302:309 | No text annotation Not in a motif group | ||
| IL_6SGC_189 | 1/A1/312:314, 1/A1/336:337 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6SGC_190 | 1/A1/317:320, 1/A1/331:333 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_6SGC_191 | 1/A1/359:364, 1/A1/396:403 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6SGC_192 | 1/A1/366:371, 1/A1/393:394 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6SGC_193 | 1/A1/411:413, 1/A1/424:429 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6SGC_194 | 1/A1/437:439, 1/A1/454:456 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6SGC_195 | 1/A1/459:461, 1/A1/468:470 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_6SGC_196 | 1/A1/487:489, 1/A1/511:512 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_6SGC_197 | 1/A1/491:496, 1/A1/506:509 | C-loop with extra cWW pair Not in a motif group | homologous IL_4V88_408 IL_93630.2 | |
| IL_6SGC_198 | 1/A1/529:530, 1/A1/554:556 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.2 | |
| IL_6SGC_199 | 1/A1/535:537, 1/A1/546:549 | No text annotation Not in a motif group | ||
| IL_6SGC_200 | 1/A1/563:565, 1/A1/585:592 | No text annotation Not in a motif group | homologous IL_8C3A_420 IL_55023.1 | |
| IL_6SGC_201 | 1/A1/566:569, 1/A1/581:584 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_001 IL_30621.2 | |
| IL_6SGC_202 | 1/A1/599:608, 1/A1/635:637 | No text annotation Not in a motif group | ||
| IL_6SGC_203 | 1/A1/611:617, 1/A1/624:632 | No text annotation Not in a motif group | homologous IL_8C3A_425 IL_55871.1 | |
| IL_6SGC_204 | 1/A1/663:665, 1/A1/1162:1164 | No text annotation Not in a motif group | geometric IL_1Y27_001 IL_51629.2 | |
| IL_6SGC_205 | 1/A1/665:671, 1/A1/1161:1162 | No text annotation Not in a motif group | geometric IL_4LFB_022 IL_69996.1 | |
| IL_6SGC_206 | 1/A1/673:675, 1/A1/1030:1032 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6SGC_207 | 1/A1/676:680, 1/A1/1025:1029 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_6SGC_208 | 1/A1/692:695, 1/A1/731:734 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1L9A_005 IL_30621.2 | |
| IL_6SGC_209 | 1/A1/802:803, 1/A1/860:863 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_6SGC_210 | 1/A1/805:807, 1/A1/856:858 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_6SGC_211 | 1/A1/807:815, 1/A1/849:856 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_6SGC_212 | 1/A1/874:876, 1/A1/910:912 | No text annotation Not in a motif group | geometric IL_5Y85_006 IL_95997.1 | |
| IL_6SGC_213 | 1/A1/877:879, 1/A1/907:909 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_427 IL_51629.2 | |
| IL_6SGC_214 | 1/A1/922:923, 1/A1/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_6SGC_215 | 1/A1/924:927, 1/A1/1014:1018 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_30621.2 | |
| IL_6SGC_216 | 1/A1/928:931, 1/A1/1010:1013 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_6SGC_217 | 1/A1/931:935, 1/A1/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_6SGC_218 | 1/A1/942:945, 1/A1/981:984 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_6SGC_219 | 1/A1/952:956, 1/A1/967:974 | Kink-turn Not in a motif group | homologous IL_4V88_434 IL_45067.2 | |
| IL_6SGC_220 | 1/A1/1042:1047, 1/A1/1071:1073 | Other IL Not in a motif group | homologous IL_4V88_435 IL_22046.1 | |
| IL_6SGC_221 | 1/A1/1047:1051, 1/A1/1067:1071 | tSH-tHW-tHS Not in a motif group | geometric IL_5J7L_037 IL_17136.1 | |
| IL_6SGC_222 | 1/A1/1091:1093, 1/A1/1152:1158 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6SGC_223 | 1/A1/1098:1101, 1/A1/1131:1134 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.2 | |
| IL_6SGC_224 | 1/A1/1101:1103, 1/A1/1129:1131 | No text annotation Not in a motif group | geometric IL_4WF9_083 IL_95997.1 | |
| IL_6SGC_225 | 1/A1/1108:1110, 1/A1/1123:1124 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_6SGC_226 | 1/A1/1168:1175, 1/A1/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_6SGC_227 | 1/A1/1203:1204, 1/A1/1694:1696 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_6SGC_228 | 1/A1/1206:1208, 1/A1/1691:1692 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_6SGC_229 | 1/A1/1214:1217, 1/A1/1681:1685 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6SGC_230 | 1/A1/1230:1232, 1/A1/1526:1528 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_6SGC_231 | 1/A1/1235:1236, 1/A1/1521:1523 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6SGC_232 | 1/A1/1270:1272, 1/A1/1510:1512 | No text annotation Not in a motif group | geometric IL_6IA2_002 IL_95997.1 | |
| IL_6SGC_233 | 1/A1/1281:1287, 1/A1/1314:1316 | No text annotation Not in a motif group | ||
| IL_6SGC_234 | 1/A1/1287:1290, 1/A1/1309:1314 | No text annotation Not in a motif group | ||
| IL_6SGC_235 | 1/A1/1291:1294, 1/A1/1305:1308 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_422D_001 IL_90802.1 | |
| IL_6SGC_236 | 1/A1/1325:1327, 1/A1/1502:1503 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_6SGC_237 | 1/A1/1329:1333, 1/A1/1498:1500 | Isolated cWS basepair Not in a motif group | homologous IL_4V88_450 IL_76319.2 | |
| IL_6SGC_238 | 1/A1/1333:1335, 1/A1/1492:1498 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4V88_451 IL_92788.2 | |
| IL_6SGC_239 | 1/A1/1337:1338, 1/A1/1488:1490 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_6SGC_240 | 1/A1/1347:1349, 1/A1/1380:1382 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_6SGC_241 | 1/A1/1363:1365, 1/A1/1374:1375 | Minor groove platform Not in a motif group | geometric IL_5T83_003 IL_42622.2 | |
| IL_6SGC_242 | 1/A1/1395:1399, 1/A1/1447:1450 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.2 | |
| IL_6SGC_243 | 1/A1/1402:1405, 1/A1/1441:1444 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_6SGC_244 | 1/A1/1412:1413, 1/A1/1427:1429 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6SGC_245 | 1/A1/1537:1539, 1/A1/1594:1596 | No text annotation Not in a motif group | geometric IL_4P3T_001 IL_95997.1 | |
| IL_6SGC_246 | 1/A1/1550:1558, 1/A1/1577:1582 | No text annotation Not in a motif group | geometric IL_5J7L_055 IL_75461.4 | |
| IL_6SGC_247 | 1/A1/1560:1562, 1/A1/1573:1575 | No text annotation Not in a motif group | geometric IL_1YZ9_002 IL_95997.1 | |
| IL_6SGC_248 | 1/A1/1604:1610, 1/A1/1629:1635 | No text annotation Not in a motif group | homologous IL_8C3A_469 IL_10092.1 | |
| IL_6SGC_249 | 1/A1/1700:1702, 1/A1/1833:1836 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_6SGC_250 | 1/A1/1702:1705, 1/A1/1829:1833 | No text annotation Not in a motif group | homologous IL_4V88_464 IL_99670.1 | |
| IL_6SGC_251 | 1/A1/1706:1708, 1/A1/1826:1828 | No text annotation Not in a motif group | homologous IL_4V88_465 IL_95997.1 | |
| IL_6SGC_252 | 1/A1/1708:1711, 1/A1/1822:1826 | No text annotation Not in a motif group | geometric IL_1DUQ_001 IL_67743.1 | |
| IL_6SGC_253 | 1/A1/1714:1716, 1/A1/1817:1819 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6SGC_254 | 1/A1/1717:1720, 1/A1/1813:1816 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_6SGC_255 | 1/A1/1720:1722, 1/A1/1812:1813 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.13 | |
| IL_6SGC_256 | 1/A1/1729:1731, 1/A1/1803:1805 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_6SGC_257 | 1/A1/1733:1736, 1/A1/1798:1801 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_6SGC_258 | 1/A1/1739:1741, 1/A1/1793:1795 | No text annotation Not in a motif group | geometric IL_4E48_004 IL_95997.1 | |
| IL_6SGC_259 | 1/A1/1742:1746, 1/A1/1788:1792 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_6SGC_260 | 1/A1/1750:1751, 1/A1/1782:1784 | No text annotation Not in a motif group | ||
| IL_6SGC_261 | 1/A1/1751:1752, 1/A1/1780:1782 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6SGC_016 | Minor groove platform | ||
| IL_6SGC_183 | No text annotation | ||
| IL_6SGC_188 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6SGC_001 | 1/54/112:116, 1/54/155:160, 1/54/275:278 | No text annotation Not in a motif group | ||
| J3_6SGC_002 | 1/54/380:387, 1/54/414:415, 1/84/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_6SGC_003 | 1/54/982:984, 1/54/1070:1074, 1/54/1236:1273 | No text annotation Not in a motif group | ||
| J3_6SGC_004 | 1/54/1531:1537, 1/54/1622:1624, 1/54/1640:1643 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_6SGC_005 | 1/54/1545:1548, 1/54/1580:1584, 1/54/1609:1614 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_6SGC_006 | 1/54/1726:1727, 1/54/1802:1806, 1/54/1832:1837 | No text annotation Not in a motif group | ||
| J3_6SGC_007 | 1/54/1969:1972, 1/54/1994:2001, 1/54/2016:2018 | No text annotation Not in a motif group | ||
| J3_6SGC_008 | 1/54/2393:2399, 1/54/2805:2807, 1/54/2819:2822 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_6SGC_009 | 1/54/2402:2405, 1/54/2785:2791, 1/54/2800:2802 | No text annotation Not in a motif group | homologous J3_8C3A_007 NA | |
| J3_6SGC_010 | 1/54/2440:2445, 1/54/2515:2519, 1/54/2536:2537 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_6SGC_011 | 1/54/2551:2555, 1/54/2572:2575, 1/54/2757:2767 | No text annotation Not in a motif group | ||
| J3_6SGC_012 | 1/54/2575:2576, 1/54/2585:2589, 1/54/2756:2757 | No text annotation Not in a motif group | ||
| J3_6SGC_013 | 1/54/3937:3939, 1/54/4074:4078, 1/54/4168:4173 | No text annotation Not in a motif group | ||
| J3_6SGC_014 | 1/54/4091:4094, 1/54/4114:4129, 1/54/4155:4158 | No text annotation Not in a motif group | ||
| J3_6SGC_015 | 1/54/4241:4243, 1/54/4267:4269, 1/54/4278:4283 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_6SGC_016 | 1/54/4463:4466, 1/54/4491:4493, 1/54/4507:4513 | No text annotation Not in a motif group | ||
| J3_6SGC_017 | 1/54/4970:4972, 1/54/4986:4991, 1/54/5060:5063 | No text annotation Not in a motif group | ||
| J3_6SGC_018 | 1/74/9:14, 1/74/65:66, 1/74/109:110 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_6SGC_019 | 1/84/44:45, 1/84/58:64, 1/84/95:99 | No text annotation Not in a motif group | ||
| J3_6SGC_020 | 1/A1/40:41, 1/A1/481:487, 1/A1/512:514 | No text annotation Not in a motif group | ||
| J3_6SGC_021 | 1/A1/682:685, 1/A1/917:922, 1/A1/1022:1023 | No text annotation Not in a motif group | ||
| J3_6SGC_022 | 1/A1/816:819, 1/A1/829:831, 1/A1/843:848 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_6SGC_023 | 1/A1/938:941, 1/A1/985:993, 1/A1/1000:1004 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6SGC_024 | 1/A1/1094:1096, 1/A1/1136:1140, 1/A1/1147:1151 | No text annotation Not in a motif group | ||
| J3_6SGC_025 | 1/A1/1218:1221, 1/A1/1645:1651, 1/A1/1673:1680 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_6SGC_026 | 1/A1/1225:1228, 1/A1/1530:1532, 1/A1/1638:1641 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_6SGC_027 | 1/A1/1237:1244, 1/A1/1255:1266, 1/A1/1516:1520 | No text annotation Not in a motif group | ||
| J3_6SGC_028 | 1/A1/1272:1277, 1/A1/1320:1324, 1/A1/1504:1510 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_6SGC_029 | 1/A1/1340:1345, 1/A1/1384:1389, 1/A1/1481:1486 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_6SGC_030 | 1/A1/1350:1351, 1/A1/1360:1363, 1/A1/1375:1379 | No text annotation Not in a motif group | ||
| J3_6SGC_031 | 1/A1/1391:1395, 1/A1/1450:1456, 1/A1/1470:1479 | No text annotation Not in a motif group | ||
| J3_6SGC_032 | 1/A1/1532:1536, 1/A1/1597:1604, 1/A1/1635:1638 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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